RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5250
(1102 letters)
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 279 bits (715), Expect = 9e-80
Identities = 94/316 (29%), Positives = 128/316 (40%), Gaps = 103/316 (32%)
Query: 481 SMTHEDNYTVWITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPI 540
+ E + +SN P+ +G F+ +
Sbjct: 161 KIRREPRHLA--------------ISNM----------PLVKSVTVAEGLIEDHFDVTVK 196
Query: 541 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 600
MSTYLVA ++ +F+ V + + GV V VY K Q +AL A +L FY+D
Sbjct: 197 MSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYED------ 250
Query: 601 PLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFACHGELGP 660
Y+ + YP +P D ++ P
Sbjct: 251 ----------------YFSIPYP---------------LPKQDLAAI------------P 267
Query: 661 SHLSGSVSSGRLSEHIGYHPTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAIT 720
SG+ MENWGL TYRE LL D++ +SA +
Sbjct: 268 DFQSGA-----------------------------MENWGLTTYRESALLFDAEKSSASS 298
Query: 721 RQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTD 780
+ I + V HELAHQWFGNLVTMEWW LWLNEG+A F+EF+ V PE + F
Sbjct: 299 KLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGK 358
Query: 781 NLVRALELDALKSSHP 796
A+E+DAL SSHP
Sbjct: 359 CF-DAMEVDALNSSHP 373
Score = 268 bits (686), Expect = 8e-76
Identities = 88/285 (30%), Positives = 118/285 (41%), Gaps = 60/285 (21%)
Query: 11 FKIVSETKELKLHVIDLDFKKVQLELADGKVLTPETKISTED---ETITLTFSETLPVG- 66
T + LH L + L G+ L+ E E E I L E L VG
Sbjct: 39 ITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGL 98
Query: 67 EVKLLFEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAK 126
++ Y G L++ GF Y+S ++
Sbjct: 99 PYTVVIHYAGNLSETFHGF----YKSTYRTKE---------------------------- 126
Query: 127 FAISLSVPSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISL 186
E R +A TQFE T AR FPC+DEPA KA FSI +
Sbjct: 127 ------------------------GELRILASTQFEPTAARMAFPCFDEPAFKASFSIKI 162
Query: 187 SVPNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLV 246
+A+SNMP+ +G F+ + MSTYLVA ++ +F+ V + + GV V
Sbjct: 163 RREPRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKV 222
Query: 247 RVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIP 291
VY K Q +AL A +L FY+DYF+I YPLPK DL AIP
Sbjct: 223 SVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIP 267
Score = 171 bits (436), Expect = 6e-44
Identities = 59/285 (20%), Positives = 107/285 (37%), Gaps = 59/285 (20%)
Query: 288 VAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD------------------------ 323
V+ PV +P+++ E+FDD+SY+KGA I+ ML++Y+
Sbjct: 374 VSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDL 433
Query: 324 ------------------GKYPILLRPSFQIPVGHPSEVEEIFDD---------ISYNKG 356
S +V+ + + I+
Sbjct: 434 WDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVR 493
Query: 357 ASIIRMLQK--YIGDGVNSSSDSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSP 414
+ M Q+ G + LW+VPL+F T + F + T+ + +P+
Sbjct: 494 GRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRF--LLKTKTDVLILPE--E 549
Query: 415 GHWIKLNPGTVGYYRVKYPRETLAQFIPSVED--KSIPPLDRLSLLDDLFALAQVGEVSL 472
WIK N G GYY V Y + ++ ++ DR SL+++ F L +G++S+
Sbjct: 550 VEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSI 609
Query: 473 VEVLKMIQSMTHEDNYTVWITICNCLQKIDLLLSNTEYHHLFYQF 517
+ L + + HE N L + L+ + + + QF
Sbjct: 610 EKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQF 654
Score = 135 bits (342), Expect = 2e-32
Identities = 48/236 (20%), Positives = 96/236 (40%), Gaps = 12/236 (5%)
Query: 878 RELAWEFLKNNYATFTERYKGGLLGRLVKHTTENFASESHAQEVTEFFTKNPTSWIERTV 937
+ L++ T +G + R+++ A + Q + W E
Sbjct: 655 KAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNG 714
Query: 938 QQSVET-IRLNSECLKRDGEA-------LYQNSDMQEEKDRISRSFSALKDPELLRKVLD 989
S+ + L + YQ S EK +I + ++ E L+ +LD
Sbjct: 715 NLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLD 774
Query: 990 FSM-SDLVRAQDSVFVIISAAQTKTGRELAWDFLKNNYATFTERYKGG--LLGRLVKHTT 1046
S D ++ Q+ ++ + G LAW FL+ N+ ++++ G + +V TT
Sbjct: 775 ESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTT 834
Query: 1047 ENFASESHAQEVTEFFTKNPT-SWIERTVQQSVETIRLNSECLKRDGEAVKQFLST 1101
F++ + +EV FF+ R VQQ++ETI N + ++ + ++ +L +
Sbjct: 835 NQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQS 890
Score = 129 bits (327), Expect = 9e-31
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 819 IELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTG 877
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G
Sbjct: 741 YSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVG 800
Query: 878 RELAWEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPT-SWIE 934
LAW+FL+ N+ ++++ G + +V TT F++ + +EV FF+
Sbjct: 801 YPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL 860
Query: 935 RTVQQSVETIRLNSECLKRDGEALYQ 960
R VQQ++ETI N + ++ + +
Sbjct: 861 RCVQQTIETIEENIGWMDKNFDKIRV 886
Score = 54.4 bits (131), Expect = 2e-07
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 610 LNPGTVGYYRVKYPRETLAQFIPSVED--KSIPPLDRLSLLDDLFA 653
N G GYY V Y + ++ ++ DR SL+++ F
Sbjct: 555 FNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQ 600
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 267 bits (685), Expect = 2e-76
Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 108/316 (34%)
Query: 481 SMTHEDNYTVWITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPI 540
++ + +Y +SN P K ++++F+ +P
Sbjct: 124 TVVIDKDYDA--------------ISNM----------PPKRIEV--SERKVVEFQDTPR 157
Query: 541 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 600
MSTYL+ V +G+F Y E D + + K + ++ L +A K + FY++
Sbjct: 158 MSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFYEN------ 208
Query: 601 PLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFACHGELGP 660
Y+ + Y +P + +S+ P
Sbjct: 209 ----------------YFGIPYA---------------LPKMHLISV------------P 225
Query: 661 SHLSGSVSSGRLSEHIGYHPTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAIT 720
+G+ MENWG +T+RE+ + + +N++
Sbjct: 226 EFGAGA-----------------------------MENWGAITFREIYMDIA-ENSAVTV 255
Query: 721 RQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTD 780
++N A V+ HE+AHQWFG+LVTM+WW LWLNE +A+F+ + + LFPE+ W F
Sbjct: 256 KRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVS 315
Query: 781 NLVRALELDALKSSHP 796
AL D+LK++HP
Sbjct: 316 RTSGALRSDSLKNTHP 331
Score = 222 bits (568), Expect = 6e-61
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 152 EDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHR 211
+ M T FE TDARR FPC D PA KA F+I++ + + A+SNMP K +
Sbjct: 91 RENGMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIE--VSERK 148
Query: 212 LLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPF 271
+++F+ +P MSTYL+ V +G+F Y E D + + K + ++ L +A K + F
Sbjct: 149 VVEFQDTPRMSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEF 205
Query: 272 YKDYFNIAYPLPKIDLVAIP 291
Y++YF I Y LPK+ L+++P
Sbjct: 206 YENYFGIPYALPKMHLISVP 225
Score = 169 bits (429), Expect = 2e-43
Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 47/276 (17%)
Query: 288 VAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDG-------------KY----PILL 330
+ + V P E+ +IFD+ISY KGASI+RM++ Y G K+ L
Sbjct: 332 IEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDL 391
Query: 331 RPSFQIPVGHPSEVEEIFDD---------ISYNKGASIIRMLQK-YIGDGVNSSSDSLWY 380
+ + G P V+ + + I + I M Q ++ +G + W
Sbjct: 392 WTAIEDVSGKP--VKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNG---EEEGRWP 446
Query: 381 VPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRVKYPRETLAQF 440
VP++ + + E + IK+N + G+YRV Y T +
Sbjct: 447 VPVNIKKKDGVERILLEDEA----------SIEADGLIKINADSAGFYRVLYDDATFSDV 496
Query: 441 IPSVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQSMTHEDNYTVWITICNCLQK 500
+ + + PLDR+ L+DDLFA G + + I++ ++++ V I ++
Sbjct: 497 MGHY--RDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEY 554
Query: 501 IDLLLSNT-EYHHLF--YQFGPVKSESPQPDGHRLL 533
+ +L + F + + + + L
Sbjct: 555 LRMLTHAFDDDARAFCRSRMQFLTGKQDENLKIALG 590
Score = 148 bits (376), Expect = 1e-36
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 21/163 (12%)
Query: 2 LEKKPFERYFKIVSETKELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSE 61
++K+ F I ++ ++ L + L + KV +T + + +T+
Sbjct: 14 IQKRTFNGTETITADAGDIVLDAVGLQINWM-------KVNGRDTAFTYDGQTVRAPG-- 64
Query: 62 TLPVGEVKLLFEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEP 121
K+ + G+++D + G Y + M T F +TDARR FPC D P
Sbjct: 65 --DSQPQKIEISFAGKVSDSLSGIYYAGRE-------NGMITTHFEATDARRMFPCVDHP 115
Query: 122 AVKAKFAISLSVPSSKVALSNMVRIAILDDEDRYMAVTQFELT 164
A KA FAI++ + A+SNM I E + V +F+ T
Sbjct: 116 AYKAVFAITVVIDKDYDAISNMPPKRIEVSERK---VVEFQDT 155
Score = 144 bits (364), Expect = 3e-35
Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 3/141 (2%)
Query: 958 LYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQTKTGREL 1017
+++ D E++ RI +F LK L V ++ QD + SA +T GRE
Sbjct: 642 KFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSALETLPGREF 701
Query: 1018 AWDFLKNNYATFTERYKGG-LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWIERTVQQ 1076
+ L + G R V+ + + + + I + +
Sbjct: 702 IFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLD--HPDAEDIVRNIGSKNISMGLAK 759
Query: 1077 SVETIRLNSECLKRDGEAVKQ 1097
+E + +N + ++R + +
Sbjct: 760 GIEMLAVNRKLVERIRQTAVK 780
Score = 142 bits (359), Expect = 1e-34
Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 3/143 (2%)
Query: 819 IELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQTKTGR 878
+E +++ D E++ RI +F LK L V ++ QD + SA +T GR
Sbjct: 640 LEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSALETLPGR 699
Query: 879 ELAWEFLKNNYATFTERYKGG-LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWIERTV 937
E + L + G R V+ + + + + I +
Sbjct: 700 EFIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLD--HPDAEDIVRNIGSKNISMGL 757
Query: 938 QQSVETIRLNSECLKRDGEALYQ 960
+ +E + +N + ++R + +
Sbjct: 758 AKGIEMLAVNRKLVERIRQTAVK 780
Score = 56.6 bits (137), Expect = 4e-08
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 602 LPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFA 653
+ L+ +N + G+YRV Y T + + + + PLDR+ L+DDLFA
Sbjct: 468 IEADGLIKINADSAGFYRVLYDDATFSDVMGHY--RDLSPLDRIGLVDDLFA 517
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 270 bits (691), Expect = 4e-76
Identities = 87/316 (27%), Positives = 124/316 (39%), Gaps = 103/316 (32%)
Query: 481 SMTHEDNYTVWITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPI 540
+ E + LSN P G FET+
Sbjct: 223 KIRRESRHIA--------------LSNM----------PKVKTIELEGGLLEDHFETTVK 258
Query: 541 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 600
MSTYLVA +V +F + +S GV V +Y KR Q +AL + K+L D++
Sbjct: 259 MSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLL----DFYE--- 311
Query: 601 PLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFACHGELGP 660
Y+ + YP + LD +++ P
Sbjct: 312 ---------------KYFDIYYP---------------LSKLDLIAI------------P 329
Query: 661 SHLSGSVSSGRLSEHIGYHPTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAIT 720
G+ MENWGL+TYRE LL D + +SA
Sbjct: 330 DFAPGA-----------------------------MENWGLITYRETSLLFDPKTSSASD 360
Query: 721 RQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTD 780
+ + V+ HELAHQWFGNLVTMEWW +WLNEG+A ++E + V+ +PE F+ +
Sbjct: 361 KLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFL-N 419
Query: 781 NLVRALELDALKSSHP 796
+ D+L SS P
Sbjct: 420 VCFEVITKDSLNSSRP 435
Score = 229 bits (586), Expect = 2e-62
Identities = 66/142 (46%), Positives = 84/142 (59%)
Query: 150 DDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDG 209
E R +AVT FE T AR FPC+DEP KA FSI + + +ALSNMP G
Sbjct: 188 GGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGG 247
Query: 210 HRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVL 269
FET+ MSTYLVA +V +F + +S GV V +Y KR Q +AL + K+L
Sbjct: 248 LLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLL 307
Query: 270 PFYKDYFNIAYPLPKIDLVAIP 291
FY+ YF+I YPL K+DL+AIP
Sbjct: 308 DFYEKYFDIYYPLSKLDLIAIP 329
Score = 171 bits (436), Expect = 9e-44
Identities = 51/291 (17%), Positives = 107/291 (36%), Gaps = 65/291 (22%)
Query: 288 VAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD------------------------ 323
++ P P++++E+FD++SYNKGA I+ ML+ ++G+
Sbjct: 436 ISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDL 495
Query: 324 ------------------GKYPILLRPSFQIPVGHPSEVEEIFDD---------ISYNKG 356
+ + +G +EV+E+ + +
Sbjct: 496 WSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQD 555
Query: 357 ASIIRMLQK--------YIGDGVNSSSDSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVT 408
+R+ Q+ + LW++PL++ T ++ + ++ +
Sbjct: 556 GCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRH--ILKSKTDTLD 613
Query: 409 IPDVSPGHWIKLNPGTVGYYRVKYPRETLAQFIPSVED--KSIPPLDRLSLLDDLFALAQ 466
+P+ W+K N + GYY V Y Q I + + P DR+ L+ D+F L
Sbjct: 614 LPE--KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVG 671
Query: 467 VGEVSLVEVLKMIQSMTHEDNYTVWITICNCLQKIDLLLSNTEYHHLFYQF 517
G ++L + L M + HE + + + L+ ++ +
Sbjct: 672 AGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENL 722
Score = 158 bits (402), Expect = 1e-39
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 11 FKIVSETKELKLHVIDLDFKKVQLELADGKVLTPETKIST-----EDETITLTFSETLPV 65
+ + T+ + LH DL+ L+ + K E I L E L
Sbjct: 99 VLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVPEKLTP 158
Query: 66 G-EVKLLFEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVK 124
+ + ++ +L D +GFY+S YR++ E R +AVT F T AR FPC+DEP K
Sbjct: 159 HLKYYVAMDFQAKLGDGFEGFYKSTYRTL-GGETRILAVTDFEPTQARMAFPCFDEPLFK 217
Query: 125 AKFAISLSVPSSKVALSNMVRIAILDDEDRYMAVTQFELT 164
A F+I + S +ALSNM ++ ++ E + FE T
Sbjct: 218 ANFSIKIRRESRHIALSNMPKVKTIELEGGLL-EDHFETT 256
Score = 133 bits (336), Expect = 1e-31
Identities = 36/147 (24%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 958 LYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRE 1016
Y+ S E+++I + S K E L K+++ M +++ Q+ ++ + A+ G++
Sbjct: 811 QYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQ 870
Query: 1017 LAWDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWIER-T 1073
LAWDF++ N+ +++ G + ++ TT +F+S+ QEV FF
Sbjct: 871 LAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDI 930
Query: 1074 VQQSVETIRLNSECLKRDGEAVKQFLS 1100
Q +ETI N + L+++ ++ +L
Sbjct: 931 FQTVLETITKNIKWLEKNLPTLRTWLM 957
Score = 128 bits (323), Expect = 3e-30
Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 819 IELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTG 877
+E Y+ S E+++I + S K E L K+++ M +++ Q+ ++ + A+ G
Sbjct: 809 LEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKG 868
Query: 878 RELAWEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWIER 935
++LAW+F++ N+ +++ G + ++ TT +F+S+ QEV FF
Sbjct: 869 QQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHL 928
Query: 936 -TVQQSVETIRLNSECLKRDGEALYQ 960
Q +ETI N + L+++ L
Sbjct: 929 DIFQTVLETITKNIKWLEKNLPTLRT 954
Score = 53.7 bits (129), Expect = 3e-07
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 610 LNPGTVGYYRVKYPRETLAQFIPSVED--KSIPPLDRLSLLDDLFA 653
N + GYY V Y Q I + + P DR+ L+ D+F
Sbjct: 623 FNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQ 668
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 208 bits (532), Expect = 3e-57
Identities = 48/296 (16%), Positives = 77/296 (26%), Gaps = 90/296 (30%)
Query: 523 ESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFAL 582
+ +FE + YL+ + G+ G VYT + + Q+
Sbjct: 184 IEDTSKDTNIYRFEQKVPIPAYLIGIASGDLSSAP----IGPRSTVYTEPFRLKDCQWEF 239
Query: 583 HVASKVLPFYKDYFNIAYPLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPL 642
+ + +Y
Sbjct: 240 ENDVEKFIQTAE----------------------KIIFEYE---------------WGTY 262
Query: 643 DRLSLLDDLFACHGELGPSHLSGSVSSGRLSEHIGYHPTEHSSGCGARVGSPVMENWGLV 702
D L +D + G ME+ +
Sbjct: 263 DILVNVDS-YPYGG---------------------------------------MESPNMT 282
Query: 703 TYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFL 762
L D N V+ HELAH W GNLVT W H WLNEG+ ++E
Sbjct: 283 FATPTLLAHDRSNID---------VIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERR 333
Query: 763 CVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALELDALKSSHP 818
+ + E + +D++K + NL + D S+ P
Sbjct: 334 IIGAIHGEPTRHFSALIGWSDLQNSIDSMKDPERFSTLVQNLNDNTDPDDAFSTVP 389
Score = 176 bits (449), Expect = 2e-46
Identities = 47/278 (16%), Positives = 79/278 (28%), Gaps = 71/278 (25%)
Query: 15 SETKELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLPVGEVKLLFEY 74
+++ EL L LD ++V + DG + + E L + L ++
Sbjct: 62 NKSDELHLDTSYLDVQEVHI---DGSKADFQIEQRKEPLGSRLVINNASCNDNFTLNIQF 118
Query: 75 VGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVP 134
+ SK + +Q + AR FPC+D P+VK+ F S+ P
Sbjct: 119 RTTDKCTALQWLNSKQ----TKGGKPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESP 174
Query: 135 SSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVA 194
V S + D + Y +FE VP
Sbjct: 175 -LPVVFSGIRIEDTSKDTNIY----RFEQK-----------------------VP----- 201
Query: 195 LSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGK 254
+P YL+ + G+ G VYT +
Sbjct: 202 ---IP-----------------------AYLIGIASGDLSSAP----IGPRSTVYTEPFR 231
Query: 255 REQGQFALHVASKVLPFYKDYFNIAYPLPKID-LVAIP 291
+ Q+ + + Y D LV +
Sbjct: 232 LKDCQWEFENDVEKFIQTAEKIIFEYEWGTYDILVNVD 269
Score = 57.9 bits (140), Expect = 2e-08
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 290 IPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD 323
+ ++ ++ F + Y KG +++ L+ +G
Sbjct: 373 QNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGG 406
Score = 57.9 bits (140), Expect = 2e-08
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 336 IPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD 369
+ ++ ++ F + Y KG +++ L+ +G
Sbjct: 373 QNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGG 406
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 209 bits (534), Expect = 4e-56
Identities = 55/312 (17%), Positives = 106/312 (33%), Gaps = 84/312 (26%)
Query: 12 KIVSETKELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLPV-GEVKL 70
+ ++L + L ++ + + K L + + ++E +T+
Sbjct: 41 SKHNVGEDLVFDGVGLKINEISI---NNKKLVEGEEYTYDNEFLTIFSKFVPKSKFAFSS 97
Query: 71 LFEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAIS 130
E N + G Y+SK + V+Q +T RR D P + AK+ ++
Sbjct: 98 EVIIHPETNYALTGLYKSKN----------IIVSQCEATGFRRITFFIDRPDMMAKYDVT 147
Query: 131 LSVPSSK--VALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSV 188
++ K V LSN ++ + +++P
Sbjct: 148 VTADKEKYPVLLSNGDKVNEFEIPGGRHGAR-------------FNDP------------ 182
Query: 189 PNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEET-----SSDG 243
P+ YL AVV G+ ++ T +
Sbjct: 183 ------------------------------PLKPCYLFAVVAGDLKHLSATYITKYTKKK 212
Query: 244 VLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIPVGHPSEVEEIFD 303
V + V++ + Q+AL K + F +DYF + Y L +++LVA+ + +E
Sbjct: 213 VELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAME---- 268
Query: 304 DISYNKGASIIR 315
NKG +I
Sbjct: 269 ----NKGLNIFN 276
Score = 143 bits (361), Expect = 7e-35
Identities = 32/101 (31%), Positives = 40/101 (39%)
Query: 696 MENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGY 755
MEN GL + LL +N+ + I VVGHE HQ+ GN VT+ W L L EG
Sbjct: 267 MENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGL 326
Query: 756 ASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHP 796
E L + V D+ SHP
Sbjct: 327 TVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHP 367
Score = 120 bits (303), Expect = 7e-28
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 504 LLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEET---- 559
LLSN G +E P G +F P+ YL AVV G+ ++ T
Sbjct: 158 LLSN----------GDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITK 207
Query: 560 -SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVALNPGTVG 616
+ V + V++ + Q+AL K + F +DYF + Y L +++LVA++ VG
Sbjct: 208 YTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVG 265
Score = 41.8 bits (98), Expect = 0.001
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 288 VAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKY 326
I +E + Y+KG+ ++RM +G+ Y
Sbjct: 366 HPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYY 404
Score = 40.6 bits (95), Expect = 0.003
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 330 LRPSFQIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD 369
S I +E + Y+KG+ ++RM +G+
Sbjct: 362 SPLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGE 401
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 192 bits (489), Expect = 9e-52
Identities = 43/283 (15%), Positives = 89/283 (31%), Gaps = 64/283 (22%)
Query: 11 FKIVSET-KELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLPVGEVK 69
+ + + L L DL +KV + +G+ + + + S + + + +
Sbjct: 48 VQSQEDNLRSLVLDTKDLTIEKVVI---NGQEVKYALGERQSYKGSPMEISLPIALSKNQ 104
Query: 70 LLF-EYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFA 128
+ E E + K ++ +Q + R PC D P+VK +
Sbjct: 105 EIVIEISFETSPKSSALQWLTPEQT-SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYT 163
Query: 129 ISLSVPSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSV 188
+SVP VAL + +R
Sbjct: 164 AEVSVPKELVALMSAIRDG----------------------------------------- 182
Query: 189 PNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRV 248
++ P+ ++ +F + YL+A+VVG + + G V
Sbjct: 183 ------------ETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQ----IGPRTLV 226
Query: 249 YTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIP 291
++ + E+ + +L +D Y + DL+ +P
Sbjct: 227 WSEKEQVEKSAYEFSETESMLKIAEDLG-GPYVWGQYDLLVLP 268
Score = 154 bits (392), Expect = 2e-39
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 696 MENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGY 755
MEN L L D ++++ V+ H+++H W GNLVT + W H WLNEG+
Sbjct: 276 MENPCLTFVTPTLLAGD---------KSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGH 326
Query: 756 ASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHP 796
++E LF E + + +HP
Sbjct: 327 TVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHP 367
Score = 105 bits (263), Expect = 3e-23
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 23/122 (18%)
Query: 518 GPVKSESPQPD--GHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKR 575
E+P P+ ++ +F + YL+A+VVG + + G V++ +
Sbjct: 178 AIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQ----IGPRTLVWSEKEQV 233
Query: 576 EQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAL----------NPGTVGYYRVKYPRE 625
E+ + +L +D Y + DL+ L NP
Sbjct: 234 EKSAYEFSETESMLKIAEDLG-GPYVWGQYDLLVLPPSFPYGGMENPCLTFV------TP 286
Query: 626 TL 627
TL
Sbjct: 287 TL 288
Score = 54.8 bits (132), Expect = 1e-07
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 334 FQIPVGHPSEV--EEIFDDISYNKGASIIRMLQKYIGD 369
F V +++ + + + Y KG +++ L++ +G
Sbjct: 368 FTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 405
Score = 54.0 bits (130), Expect = 2e-07
Identities = 6/35 (17%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 291 PVGHPSEV--EEIFDDISYNKGASIIRMLQKYIGD 323
V +++ + + + Y KG +++ L++ +G
Sbjct: 371 LVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 405
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 184 bits (469), Expect = 4e-48
Identities = 54/309 (17%), Positives = 91/309 (29%), Gaps = 84/309 (27%)
Query: 11 FKIVSETKELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLPVGEVKL 70
+ + L L V++ +G E ET+T+ + V++
Sbjct: 40 VEPQRVGEPLVLD-GSAKLLSVKI---NGA----AADYVLEGETLTIAGVPSER-FTVEV 90
Query: 71 LFEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAIS 130
E + N + G Y S TQ R+ D P V +KF +
Sbjct: 91 ETEILPAENKSLMGLYASGG----------NLFTQCEPEGFRKITFYIDRPDVMSKFTTT 140
Query: 131 LSVPSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPN 190
+ D+ RY
Sbjct: 141 IVA-----------------DKKRYP---------------------------------- 149
Query: 191 NKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEET----SSDGVLV 246
V LSN DG +++E +YL A+V G+ E+ S V +
Sbjct: 150 --VLLSNGNKIDGGEFSDGRHWVKWEDPFSKPSYLFALVAGDLAVTEDYFTTMSGRNVKI 207
Query: 247 RVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIPVGHPSEVEEIFDDIS 306
YT + + FA+ + + + F + Y L +VA+ + +E
Sbjct: 208 EFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAME------- 260
Query: 307 YNKGASIIR 315
NKG +I
Sbjct: 261 -NKGLNIFN 268
Score = 131 bits (332), Expect = 2e-31
Identities = 30/103 (29%), Positives = 41/103 (39%)
Query: 696 MENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGY 755
MEN GL + +L DS+ + + I VVGHE H W GN VT W L L EG
Sbjct: 259 MENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGL 318
Query: 756 ASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQ 798
F + + + DA ++HP +
Sbjct: 319 TVFRDQEFSGDRASRAVRRIENIRLLRQHQFPEDAGPTAHPVR 361
Score = 109 bits (274), Expect = 2e-24
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 504 LLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEET---- 559
LLSN G DG +++E +YL A+V G+ E+
Sbjct: 151 LLSN----------GNKIDGGEFSDGRHWVKWEDPFSKPSYLFALVAGDLAVTEDYFTTM 200
Query: 560 SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVALNPGTVGYY 618
S V + YT + + FA+ + + + F + Y L +VA+ +G
Sbjct: 201 SGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAM 259
Score = 45.7 bits (108), Expect = 9e-05
Identities = 23/221 (10%), Positives = 57/221 (25%), Gaps = 38/221 (17%)
Query: 289 AIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYPILLRPSFQIPVGHPSEVEEIF 348
+ E+ + Y KGA ++RM +G+ + ++ FQ G ++
Sbjct: 359 PVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQAVTCDDFR 418
Query: 349 DDIS--------------YNKGASIIRMLQKYIGD------------GVNSSSDSLWYVP 382
++ G ++ + + + + +P
Sbjct: 419 AAMADANGINLDQFALWYSQAGTPVLEAEGRLKNNIFELTVKQTVPPTPDMTDKQPMMIP 478
Query: 383 LSFCTQANPSEEV-----------FSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRVK 431
+ E V ++ + V+ L G +
Sbjct: 479 VKVGLLNRNGEAVAFDYQGKRATEAVLLLTEAEQTFLLEGVTEAVVPSLLRGFSAPVHLN 538
Query: 432 YPRETLA-QFIPSVEDKSIPPLDRLSLLDDLFALAQVGEVS 471
YP + + + + + L A + +S
Sbjct: 539 YPYSDDDLLLLLAHDSDAFTRWEAAQTLYRRAVAANLATLS 579
Score = 44.5 bits (105), Expect = 2e-04
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 330 LRPSFQIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD 369
+ + E+ + Y KGA ++RM +G+
Sbjct: 354 GPTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLGE 393
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 182 bits (463), Expect = 3e-47
Identities = 48/284 (16%), Positives = 90/284 (31%), Gaps = 75/284 (26%)
Query: 12 KIVSETKELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLPVGEVKLL 71
+ + L+L+ DL V + + + T ++E L S +K++
Sbjct: 65 RHGASDAPLRLNGEDLKLVSVHI---NDEPWTA-----WKEEEGALVISNLPERFTLKII 116
Query: 72 FEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISL 131
E N ++G Y+S TQ + R D P V A+F +
Sbjct: 117 NEISPAANTALEGLYQSGD----------ALCTQCEAEGFRHITYYLDRPDVLARFTTKI 166
Query: 132 SVPSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNN 191
K K+ L
Sbjct: 167 IAD--------------------------------------------KIKYPFLL----- 177
Query: 192 KVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEET----SSDGVLVR 247
SN ++ +G +Q++ YL A+V G+FD + +T S V +
Sbjct: 178 ----SNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALE 233
Query: 248 VYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIP 291
+Y G ++ +A+ + + ++ F + Y L +VA+
Sbjct: 234 LYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVD 277
Score = 122 bits (308), Expect = 1e-28
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 6/114 (5%)
Query: 683 HSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVT 742
GA MEN GL + +L + + +I V+GHE H W GN VT
Sbjct: 277 DFFNMGA------MENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVT 330
Query: 743 MEWWTHLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHP 796
W L L EG F + L V DA +HP
Sbjct: 331 CRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMAHP 384
Score = 109 bits (274), Expect = 2e-24
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 504 LLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEET---- 559
LLSN G ++ +G +Q++ YL A+V G+FD + +T
Sbjct: 176 LLSN----------GNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTR 225
Query: 560 SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVALNPGTVG 616
S V + +Y G ++ +A+ + + ++ F + Y L +VA++ +G
Sbjct: 226 SGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMG 282
Score = 41.8 bits (98), Expect = 0.001
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 330 LRPSFQIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD 369
+ I E+ + Y KGA +IRM+ +G+
Sbjct: 379 SPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGE 418
Score = 41.5 bits (97), Expect = 0.002
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 271 FYKDYFNIAYPLPKIDL-VAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKY 326
+ + + + I E+ + Y KGA +IRM+ +G+ +
Sbjct: 365 NVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENF 421
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 175 bits (446), Expect = 2e-46
Identities = 33/279 (11%), Positives = 77/279 (27%), Gaps = 66/279 (23%)
Query: 13 IVSETKELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLPVGEVKLLF 72
L L DL +V + + G+ + ++ D+ + + P+ K+
Sbjct: 55 FTDNKAPLILDTRDLVIHRVMAKNSQGQWVKVNYDLAKRDDVLGSKLTINTPLNAKKVRV 114
Query: 73 EYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLS 132
Y +K G +++ +Q + AR P D P+V+ + ++
Sbjct: 115 YY--NSTEKATGLQWLSAEQT-AGKEKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARIT 171
Query: 133 VPSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNK 192
+A+ + + + Y F +
Sbjct: 172 TDKDLLAVMSANNEPGTERDGDY----FFSMP-----------------------QA--- 201
Query: 193 VALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPV 252
+P YL+A+ VG+ ++ +Y
Sbjct: 202 -----IP-----------------------PYLIAIGVGDLEFKA----MSHQTGIYAES 229
Query: 253 GKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIP 291
+ ++ + + Y + DL+ +P
Sbjct: 230 YILDAAVAEFDDTQAMIDKAEQMY-GKYRWGRYDLLMLP 267
Score = 144 bits (366), Expect = 4e-36
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 696 MENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGY 755
MEN L + D +++ ++ HELAH W GNLVT E W LWLNEG+
Sbjct: 275 MENPRLSFITPTVVAGD---------KSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGF 325
Query: 756 ASFVEFLCVHHLF-PEYDIWTQFVTDNLVRA--LELDALKSSHPTQF 799
S+VE + +F + + Q + + A LELDA +
Sbjct: 326 TSYVENRIMEAVFGTDRAVMEQALGAQDLNAEILELDASDTQLYIDL 372
Score = 91.8 bits (228), Expect = 4e-19
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 21/115 (18%)
Query: 523 ESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFAL 582
P + F + YL+A+ VG+ ++ +Y +
Sbjct: 184 NEPGTERDGDYFFSMPQAIPPYLIAIGVGDLEFKA----MSHQTGIYAESYILDAAVAEF 239
Query: 583 HVASKVLPFYKDYFNIAYPLPKIDLVAL----------NPGTVGYYRVKYPRETL 627
++ + + Y + DL+ L NP T+
Sbjct: 240 DDTQAMIDKAEQMY-GKYRWGRYDLLMLPPSFPFGGMENPRLSFI------TPTV 287
Score = 55.2 bits (133), Expect = 1e-07
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 19/99 (19%)
Query: 331 RPSFQIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGV---------------NSSS 375
+ + P ++ F + Y KG + L++ G + +
Sbjct: 367 QLYIDLKGRDP---DDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLGT 423
Query: 376 DSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSP 414
D+ L V E++ + + +P +P
Sbjct: 424 DNFVKY-LKANLTDKYPNIVSDNEINEWIFKAGLPSYAP 461
Score = 54.0 bits (130), Expect = 2e-07
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 288 VAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD 323
+ + P ++ F + Y KG + L++ G
Sbjct: 370 IDLKGRDP---DDAFSGVPYVKGQLFLMYLEEKFGR 402
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo
sapiens}
Length = 419
Score = 137 bits (347), Expect = 8e-35
Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 958 LYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGRE 1016
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G
Sbjct: 260 KYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYP 319
Query: 1017 LAWDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSW-IERT 1073
LAW FL+ N+ ++++ G + +V TT F++ + +EV FF+ + R
Sbjct: 320 LAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRC 379
Query: 1074 VQQSVETIRLNSECLKRDGEAVKQFLST 1101
VQQ++ETI N + ++ + ++ +L +
Sbjct: 380 VQQTIETIEENIGWMDKNFDKIRVWLQS 407
Score = 132 bits (334), Expect = 4e-33
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 820 ELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGR 878
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G
Sbjct: 259 SKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGY 318
Query: 879 ELAWEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSW-IER 935
LAW+FL+ N+ ++++ G + +V TT F++ + +EV FF+ + R
Sbjct: 319 PLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLR 378
Query: 936 TVQQSVETIRLNSECLKRDGEALYQ 960
VQQ++ETI N + ++ + +
Sbjct: 379 CVQQTIETIEENIGWMDKNFDKIRV 403
Score = 131 bits (331), Expect = 9e-33
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 364 QK--YIGDGVNSSSDSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHWIKLN 421
Q+ G + LW+VPL+F T + F + T+ + +P+ WIK N
Sbjct: 18 QEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRF--LLKTKTDVLILPE--EVEWIKFN 73
Query: 422 PGTVGYYRVKYPRETLAQFIPSVED--KSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMI 479
G GYY V Y + ++ ++ DR SL+++ F L +G++S+ + L +
Sbjct: 74 VGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLS 133
Query: 480 QSMTHEDNYTVWITICNCLQKIDLLLSNTEYHHLFYQF 517
+ HE N L + L+ + + + QF
Sbjct: 134 LYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQF 171
Score = 53.3 bits (128), Expect = 3e-07
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 610 LNPGTVGYYRVKYPRETLAQFIPSVED--KSIPPLDRLSLLDDLFA 653
N G GYY V Y + ++ ++ DR SL+++ F
Sbjct: 72 FNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQ 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.2 bits (174), Expect = 1e-12
Identities = 114/752 (15%), Positives = 210/752 (27%), Gaps = 347/752 (46%)
Query: 374 SSDSL---WYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRV 430
S SL VP + A+ +E F+ +P+ + G P T
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNK---------ILPEPTEGFAADDEPTT------ 56
Query: 431 KYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQSMTH-EDNYT 489
P E + +F L + L ++VG +VL + +T E+ Y
Sbjct: 57 --PAELVGKF--------------LGYVSSLVEPSKVG--QFDQVLNLC--LTEFENCY- 95
Query: 490 VWITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVV 549
L + H L + ++++ L++ Y+ A +
Sbjct: 96 ---------------LEGNDIHALAAKL-LQENDTTLVKTKELIK--------NYITARI 131
Query: 550 VGEFDYVEETSS-------DGVLVRVYTPVGKREQGQ------F----ALHVASKVLPFY 592
+ + + ++++S +G ++ G GQ F L Y
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGN-AQLVAIFG----GQGNTDDYFEELRDL---------Y 177
Query: 593 KDYFNIAYPLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVED-KSIPP--LDRLSLLD 649
+ Y + L I A ETL++ I + D + + L+ L L+
Sbjct: 178 QTYHVLVGDL--IKFSA---------------ETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 650 DLFACHGELGPSH---LSGSVS---SGRLS--------EHIGYHPTEH------SSGCGA 689
+ P LS +S G + + +G+ P E ++G
Sbjct: 221 N-----PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 690 RVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW--FGNLV--TMEW 745
GLVT A+ + W F V +
Sbjct: 276 ----------GLVT---------------------AVAI--AETDSWESFFVSVRKAITV 302
Query: 746 WTHLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTDNL------------VRALELDALKS 793
++ G + +P + + D+L + L + ++
Sbjct: 303 L--FFI--GVRC-------YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 794 ------SH--------------PTQFVTDNLVRALELDALKSSHPIELYQ-NSDMQEEK- 831
SH V V S P LY N +++ K
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLV----V---------SGPPQSLYGLNLTLRKAKA 398
Query: 832 ----DRISRS-FSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQTKTGRELAWEFLK 886
D+ SR FS RK L FS F+ +++
Sbjct: 399 PSGLDQ-SRIPFSE-------RK-LKFSNR---------FLPVASP-------------- 426
Query: 887 NNYATFTERYKGGLLGRLVKHTTENFASESHAQEVTEFFTKNPTSWIERTVQQSVETIRL 946
F H+ ++ I + + + +
Sbjct: 427 -----F--------------HS-------HLLVPASDL--------INKDLVK--NNVSF 450
Query: 947 NSECLK------RDGEALYQNSDMQEEKDRISRSFSALKDPELLRK-------------- 986
N++ ++ DG SD++ IS + D ++R
Sbjct: 451 NAKDIQIPVYDTFDG------SDLRVLSGSISER---IVD-CIIRLPVKWETTTQFKATH 500
Query: 987 VLDF------SMSDLV-RAQD--SVFVIISAA 1009
+LDF + L R +D V VI++
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Score = 67.8 bits (165), Expect = 2e-11
Identities = 104/666 (15%), Positives = 185/666 (27%), Gaps = 270/666 (40%)
Query: 124 KAKFAISLSVPSSKVALSN--------MVR----IAILDDED---RYMAVTQFELTDARR 168
+ +F L P+ A + + + ++ L + ++ V LT+
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 169 CFPCWDEP-AVKAKFSISLSVPNNKV-----------ALSNMPVKSESPQPDGHRLLQFE 216
C+ ++ A+ AK K ++ P +S L +
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN----SALFRAV 149
Query: 217 TSPIMSTYLVAVVVGEF-------DYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVL 269
+ F DY EE L + Y + + +++ L
Sbjct: 150 GEGNAQLVAI------FGGQGNTDDYFEELRD---LYQTYHVLVGD-----LIKFSAETL 195
Query: 270 -----------PFYKDYFNI------AYPLPKID-LVAIPVGHPSEVEEIFDDISYNKGA 311
+ NI P D L++IP+ P
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP---------------- 239
Query: 312 SIIRMLQ--KYI----GDGKYPILLRPSFQIPVGHPSEVEEIFDDISYNKGASIIRMLQK 365
+I ++Q Y+ G P LR + GH + ++ A I
Sbjct: 240 -LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL------VT----AVAI----- 283
Query: 366 YIGDGVNSSSDSLWYVPLSFCTQANPSEEV-FSAEMSTRVTQVTIPDVSPGHWIKLNPGT 424
+ +DS W SF + V F +I G
Sbjct: 284 -------AETDS-WE---SFFVSVRKAITVLF--------------------FI----G- 307
Query: 425 VGYYRVK--YPRETLAQFIPSVEDKSI------P-PLDRLSLLDDLFALAQVGEVSLVEV 475
R YP +L PS+ + S+ P P+ LS+ + ++ +V
Sbjct: 308 ---VRCYEAYPNTSLP---PSILEDSLENNEGVPSPM--LSISN----------LTQEQV 349
Query: 476 LKMIQSM-TH--EDNYTVWITICNCLQKIDLLLSNTEYHHLFYQF---GPVKSESPQPDG 529
+ +H +++++ L N + GP +S
Sbjct: 350 QDYVNKTNSHLPAG------------KQVEISLVNGAKN-----LVVSGPPQS------- 385
Query: 530 HRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKRE---QGQFALHVAS 586
L + + + + + L + P +R+ +F L VAS
Sbjct: 386 ---------------LYGLNL----TLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPVAS 425
Query: 587 KVLPFYKDYFNIAYPLPKIDLVALNPGTVGYYRVKYPRETLAQFIP--SVED-------- 636
PF+ A L DLV N V + + + IP D
Sbjct: 426 ---PFHSHLLVPASDLINKDLVKNN--------VSFNAKDIQ--IPVYDTFDGSDLRVLS 472
Query: 637 KSIPPLDRLSLLDDLF--ACHGE----LGPSHL----SGSVSS-GRLSEHIGYHPTEHSS 685
SI ++D + E +H+ G S G L+
Sbjct: 473 GSISE----RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN-------KD 521
Query: 686 GCGARV 691
G G RV
Sbjct: 522 GTGVRV 527
Score = 56.2 bits (135), Expect = 6e-08
Identities = 95/574 (16%), Positives = 167/574 (29%), Gaps = 207/574 (36%)
Query: 43 TPETKISTEDETITLTFSETLPVGEVKLLFEYVGELNDKMKGFYRSKYRSVL-----HDE 97
P + +DE P +L+ +++G ++ ++ ++ VL E
Sbjct: 43 EPTEGFAADDE----------PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 98 DRYMAVTQFCSTD----ARRCFPCWDEPAVKAKFAIS--------LSVPSSKVALSNMVR 145
+ Y+ D A + D VK K I P K + S + R
Sbjct: 93 NCYL-----EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 146 IAILDDEDRYMAVTQFELTDARRCF-------PCWDE---------PAVKAKFSISLSVP 189
A+ + + +A+ F ++E V S
Sbjct: 148 -AVGEGNAQLVAI-----------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 190 NNKVALSNMPVKSESPQPDGHRLLQF----ETSPIMSTYLVAVVV-----GEFD---YVE 237
+ L + +E G +L++ +P YL+++ + G YV
Sbjct: 196 SE---LIRTTLDAEKVFTQGLNILEWLENPSNTPDKD-YLLSIPISCPLIGVIQLAHYV- 250
Query: 238 ETSSDGVLVRV--YTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIPVGHP 295
V ++ +TP R + A + + + A+ +
Sbjct: 251 ------VTAKLLGFTPGELRSYLKGATGHSQGL------------------VTAVAIAET 286
Query: 296 SEVEEIFDDISYNKGASIIRMLQKYIGDGKYPILLR-----PSFQIPVGHPSEVEEIFDD 350
E F I +L +IG +R P+ +P PS +E D
Sbjct: 287 DSWES-FFVSV----RKAITVL-FFIG-------VRCYEAYPNTSLP---PSILE---DS 327
Query: 351 ISYNKGA-----SIIRM----LQKYIGDGVNSSSD-------SLW-----YV----PLS- 384
+ N+G SI + +Q Y+ + NS SL V P S
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 385 --FCTQ-----ANPSEEVFSAEMSTRVTQVTI---PDVSPGHWIKLNPGT------VGYY 428
A + S R + + P SP H L P + +
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 429 RVKYPRETLAQFIP--SVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQSMTHED 486
V + + + IP D S DL +V S+ E + + +
Sbjct: 447 NVSFNAKDIQ--IPVYDTFDGS-----------DL----RVLSGSISERI--VDCIIRL- 486
Query: 487 NYTV-WITICNCLQKIDLLLSNTEYHHLFYQFGP 519
V W T + H+ FGP
Sbjct: 487 --PVKWETTT-----------QFKATHIL-DFGP 506
Score = 47.0 bits (111), Expect = 4e-05
Identities = 54/278 (19%), Positives = 82/278 (29%), Gaps = 105/278 (37%)
Query: 110 DARRCFPC----WDEPA---VKAKFAISLSVPSSKVALSNMVRIAILDD-------EDRY 155
D + W+ A K + S+ + ++N V + I + Y
Sbjct: 1634 DLYKTSKAAQDVWNR-ADNHFKDTYGFSIL----DIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 156 MAVTQFE-LTDAR----RCFPCWDEPAVKAKFSIS---LSVPNN-KVALSNMPV------ 200
A+ FE + D + + F +E + F LS + AL+ M
Sbjct: 1689 SAMI-FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 201 KSESPQPD-----GHRL------------LQFET-------------------SPIMSTY 224
KS+ P GH L + E+ S Y
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 225 -LVAV----VVGEFD------YVEETSSD-GVLVRV--Y-TP----V--GKREQGQFALH 263
++A+ V F VE G LV + Y V G AL
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR----ALD 1863
Query: 264 VASKVLPFYKDYFNIAYPLPKIDLVAIPVG-HPSEVEE 300
+ VL F K L KID++ + EVE
Sbjct: 1864 TVTNVLNFIK--------LQKIDIIELQKSLSLEEVEG 1893
Score = 44.7 bits (105), Expect = 2e-04
Identities = 41/254 (16%), Positives = 77/254 (30%), Gaps = 88/254 (34%)
Query: 820 ELYQNSDMQEEK-DRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQTKTGR 878
+LY+ S ++ +R F + FS+ D+V I + G+
Sbjct: 1634 DLYKTSKAAQDVWNRADNHF---------KDTYGFSILDIVINNPVNLTIHFGGE--KGK 1682
Query: 879 ELAWEFLKNNYATFTERYKGGLLGRLVKHTTENFASESHAQEVTEFFTK----NPTSWIE 934
++ NY+ ++ + G+L +E +E+ E T + +
Sbjct: 1683 R-----IRENYSAMI--FETIVDGKLK--------TEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 935 RT-VQQ------SVETIR-LNSECLKRD---------GE--ALYQNSD------------ 963
T Q L S+ L GE AL +D
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
Query: 964 -----MQE--EKDRISRSFSAL--KDPELLRKVLDFSMSDLVRAQDSVFVIISAAQTKTG 1014
MQ +D + RS + +P + Q+++ ++ +TG
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS---------QEALQYVVERVGKRTG 1838
Query: 1015 R--ELAWDFLKNNY 1026
E+ NY
Sbjct: 1839 WLVEIV------NY 1846
Score = 38.9 bits (90), Expect = 0.013
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 42/150 (28%)
Query: 955 GEALYQNSDMQEEK-DRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQTKT 1013
G LY+ S ++ +R F + FS+ D+V I +
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHF---------KDTYGFSILDIVINNPVNLTIHFGGE--K 1680
Query: 1014 GRELAWDFLKNNYATFTERYKGGLLGRLVKHTTENFASESHAQEVTEFFTK----NPTSW 1069
G+ ++ NY+ ++ + G+L +E +E+ E T +
Sbjct: 1681 GKR-----IRENYSAMI--FETIVDGKLK--------TEKIFKEINEHSTSYTFRSEKGL 1725
Query: 1070 IERT-VQQ------SVETIRLNSECLKRDG 1092
+ T Q LK G
Sbjct: 1726 LSATQFTQPALTLMEKAAFED----LKSKG 1751
Score = 36.6 bits (84), Expect = 0.061
Identities = 34/253 (13%), Positives = 70/253 (27%), Gaps = 104/253 (41%)
Query: 481 SMTHEDNYTVWITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLL---QFET 537
+M E + ++I+ ++ + G LL QF T
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--------------EKG--LLSATQF-T 1732
Query: 538 SPIMSTYLVAVVVGEFDYVEETSSDGVLVRV----------YTPVGKREQGQFALHVASK 587
P + + F+ ++ G++ Y AL +
Sbjct: 1733 QPAL----TLMEKAAFEDLKS---KGLIPADATFAGHSLGEYA----------ALASLAD 1775
Query: 588 VLPFYKD----------YFNIAYP-----LPKIDLVALNPGTVGYYRVKYPRETLAQFIP 632
V+ + +A P ++A+NPG V + +E L +
Sbjct: 1776 VMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA---ASFSQEALQYVVE 1831
Query: 633 SVEDKS----------IPP-----------LDRLS-LLD-------DLFACHGELGPSHL 663
V ++ + LD ++ +L+ D+ L
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI---------IEL 1882
Query: 664 SGSVSSGRLSEHI 676
S+S + H+
Sbjct: 1883 QKSLSLEEVEGHL 1895
Score = 31.6 bits (71), Expect = 2.0
Identities = 58/309 (18%), Positives = 94/309 (30%), Gaps = 105/309 (33%)
Query: 573 GKREQG-------QFALHVASKVLPFYKDYFNIAYPLPKIDLVALNPGTV----GYYRVK 621
G +EQG A V ++F Y +D+V NP + G + K
Sbjct: 1625 GSQEQGMGMDLYKTSK--AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 622 YPRETLAQFI------PSVEDKSIPPLDRLSLLDDLFAC-HGELG------PSHLSGSVS 668
RE + I ++ + I F G L P+ +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 669 SGRLSEHIGYHPTE-----HSSG------CGARVGSP--VMENWGLVTYR----EVCLLV 711
+ + G P + HS G A V S ++E +V YR +V +
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE---VVFYRGMTMQVAVPR 1799
Query: 712 DSQNTS-----AITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHH 766
D S AI +A E A Q+ V G+ VE
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGKR--------TGW--LVE------ 1842
Query: 767 LFPEYDIWTQFVTDNL----------VRALE-----LDALKSSHPTQFVTDNLVRALELD 811
I V N+ +RAL+ L+ +K ++ +++
Sbjct: 1843 ------I----VNYNVENQQYVAAGDLRALDTVTNVLNFIK------------LQKIDII 1880
Query: 812 ALKSSHPIE 820
L+ S +E
Sbjct: 1881 ELQKSLSLE 1889
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 4e-12
Identities = 105/620 (16%), Positives = 179/620 (28%), Gaps = 179/620 (28%)
Query: 95 HDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDDEDR 154
H D Q+ D F E A F K LS I+ +D
Sbjct: 5 HHMDFETGEHQYQYKDILSVF----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 155 YMAVTQFELTDARRCFPCW---DEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHR 211
++ R F E V+ KF + N K +S P+K+E QP
Sbjct: 61 --------VSGTLRLFWTLLSKQEEMVQ-KFVEEVLRINYKFLMS--PIKTEQRQP---- 105
Query: 212 LLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPF 271
S + Y+ + + +D + Y V R Q L A L
Sbjct: 106 ------SMMTRMYI--------EQRDRLYNDNQVFAKY-NV-SRLQPYLKLRQALLELR- 148
Query: 272 YKDYFNIAYPLPKIDL----------VAIPVGHPSEVEEIFDD----IS---YNKGASII 314
P + + VA+ V +V+ D ++ N +++
Sbjct: 149 ---------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 315 RMLQK--YIGDGKYPILLRPSFQIPVGHPSEVEEIFDDISYNKGASIIRMLQKY-----I 367
MLQK Y D + S I + + I ++ + + Y +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRR------LLKSKPYENCLLV 249
Query: 368 GDGVNSSSDSLWYVPLSFCTQANPSEEVFSAE----MSTRVTQVT--IPDVSPGHWIKLN 421
V ++ W F+ ++TR QVT + + H I L+
Sbjct: 250 LLNVQNAK--AW--------------NAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLD 292
Query: 422 PGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQS 481
++ P E + + D L R L + L+ + E S+ + L +
Sbjct: 293 HHSMTLT----PDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGLATWDN 346
Query: 482 MTHEDNYTVWITICNCLQKIDLLLSNTEYHHLFYQFG--PVKSESPQPDGHRLLQFETSP 539
H + + I + L L EY +F + P ++
Sbjct: 347 WKHVNCDKLTTIIESSLNV----LEPAEYRKMFDRLSVFP----------------PSAH 386
Query: 540 IMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 599
I + +L ++ V K + + L K
Sbjct: 387 IPT--------------------ILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKEST 425
Query: 600 YPLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFACHGELG 659
+P I Y +K E +SI +D ++ +L
Sbjct: 426 ISIPSI-----------YLELKVKLENEYAL-----HRSI--VDHYNIPKTF--DSDDLI 465
Query: 660 PSHLSGSVSSGRLSEHIGYH 679
P +L S HIG+H
Sbjct: 466 PPYLDQYFYS-----HIGHH 480
Score = 49.5 bits (117), Expect = 7e-06
Identities = 85/618 (13%), Positives = 153/618 (24%), Gaps = 181/618 (29%)
Query: 530 HRLLQFETSPIMSTY--LVAV----VVGEFD--YVEETSSDGVL----VRVYTPVGKREQ 577
H + FET Y +++V V FD V++ +L +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDAVS 62
Query: 578 GQFAL------HVASKVLPFYKDYFNIAYP--LPKIDLVALNPGTVGYYRVKYPRETLAQ 629
G L V F ++ I Y + I P ++ R+ L
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYN 121
Query: 630 FIPSVEDKSIPPLDRLSLLDDLFACHGELGPSHLSGSVSSGRLSEHIGYHPTEHSSGCG- 688
++ RL L EL P+ + G L G G
Sbjct: 122 DNQVFAKYNVS---RLQPYLKLRQALLELRPA--KNVLIDGVL-------------GSGK 163
Query: 689 ----ARVGS-----PVMEN---WGLVTYREVC----LLVDSQNTSAITRQNIALVVGHEL 732
V M+ W + + +L Q N
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPN-----WTSR 216
Query: 733 AHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPEY-----DIWTQFVTDNLVRALE 787
+ + + L L + ++ A
Sbjct: 217 SDHSSNIKLRIHSIQA-ELRR--------LLKSKPYENCLLVLLNVQNA----KAWNAFN 263
Query: 788 LDALKSSHPTQFVTDNLVRALELDALKSSHPIELYQNSDMQEEKDRISRSFSALKDPELL 847
L T L A ++H D S + + + LL
Sbjct: 264 LSC-----KILLTTRFKQVTDFLSAATTTHISL-----------DHHSMTLTPDEVKSLL 307
Query: 848 RKVLDFSMSDLVRAQDSVFVIISAAQTKTGRELA----WEFLKNNYATFT--ERYKGGLL 901
K LD DL R + T E +++ AT+ + L
Sbjct: 308 LKYLDCRPQDLPR------------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 902 GRLVKHTTENFASESHAQEVTEF--FTKN---PTS-----W---IERTVQQSVETIRLNS 948
+++ + + + F + PT W I+ V V + S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 949 ECLKRDGEALYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISA 1008
K+ E+ + E + L R ++D ++ + DS
Sbjct: 416 LVEKQPKESTISIPSIYLELKV-----KLENEYALHRSIVDH--YNIPKTFDS------- 461
Query: 1009 AQTKTGRELAWDFLKN---NYATFTERYKGGLLGRLVKHTTENFASESHAQEVTEF---- 1061
D + Y + +G H + H + +T F
Sbjct: 462 ----------DDLIPPYLDQYFYS---H----IGH---H----LKNIEHPERMTLFRMVF 497
Query: 1062 --FTKNPTSWIERTVQQS 1077
F ++E+ ++
Sbjct: 498 LDF-----RFLEQKIRHD 510
Score = 43.3 bits (101), Expect = 5e-04
Identities = 49/344 (14%), Positives = 104/344 (30%), Gaps = 80/344 (23%)
Query: 822 YQNSD-MQEEKDRISRSFSALKDPELLRKVL-DFSMSDLVRAQDSV------FVIISAAQ 873
YQ D + +D +F ++ + +L + ++ ++D+V F + + Q
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 874 TKTGRELAWEFLKNNYATFTERYKGGLLGRLVKHTTENFASE-SHAQEVTEFFTKNPTSW 932
+ ++ E L+ NY K + T + + + F K
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDNQVFAKYN--- 130
Query: 933 IERTVQQSVETIRLNSECLKRDGEALY-------------------QNSDMQEEKD---- 969
+ R Q +R + L A + +Q + D
Sbjct: 131 VSR--LQPYLKLR---QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 970 -----RISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQTKTGRELA------ 1018
+ + L+ + L +D + + ++ + I + Q + R L
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 1019 --------WDFLKNNYATF--------TERYKG---GLLGRLVKHTTENFASES-HAQEV 1058
+ + F T R+K L H + + S + EV
Sbjct: 246 CLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 1059 TEFFTKNPTSWIERTVQQ-SVETIRLNSECLKRDGEAVKQFLST 1101
K +++ Q E + N L E+++ L+T
Sbjct: 304 KSLLLK----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Score = 40.2 bits (93), Expect = 0.004
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 30/165 (18%)
Query: 955 GEALYQNSD-MQEEKDRISRSFSALKDPELLRKVL-DFSMSDLVRAQDSV------FVII 1006
GE YQ D + +D +F ++ + +L + ++ ++D+V F +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 1007 SAAQTKTGRELAWDFLKNNYATFTERYKGGLLGRLVKHTTENFASE-SHAQEVTEFFTKN 1065
+ Q + ++ + L+ NY K + T + + + F K
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDNQVFAKY 129
Query: 1066 PTSWIERTVQQSVETIRLNSECLK--RDGEAV---------KQFL 1099
+ R Q +R + L R + V K ++
Sbjct: 130 N---VSR--LQPYLKLR---QALLELRPAKNVLIDGVLGSGKTWV 166
Score = 39.8 bits (92), Expect = 0.006
Identities = 77/462 (16%), Positives = 133/462 (28%), Gaps = 166/462 (35%)
Query: 1 MLEKKPFERYFKI---VSETKELKLHVIDLDFK-KVQL-----ELADGKVLTPETKISTE 51
+L+ KP+E + V K + K+ L ++ D T IS +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWN----AFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 52 DETITLTFSETLPVGEVKLLFEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDA 111
++TLT E LL +Y+ L E
Sbjct: 293 HHSMTLTPDEVK-----SLLLKYLDCRPQD------------LPRE-------------V 322
Query: 112 RRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDDE----DRYMAVTQFELTDAR 167
P +S+ +A + D D + V +LT
Sbjct: 323 LTTNP----------RRLSI------IA-------ESIRDGLATWDNWKHVNCDKLTTII 359
Query: 168 R-CFPCWDEPAVKAKFSISLSV-PNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYL 225
+ + F LSV P + +++P S L+ F+ +
Sbjct: 360 ESSLNVLEPAEYRKMF-DRLSVFPPS----AHIPTILLS-------LIWFD----VIKSD 403
Query: 226 VAVVVGEF--------DYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYK---- 273
V VVV + E T S + +Y + + + ++ALH ++ Y
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEYALH--RSIVDHYNIPKT 458
Query: 274 ------------DYF--NIAYPLPKIDLVAIPVGHPSEVEEIF------------DDISY 307
YF +I + L I+ + +F D ++
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIE----HPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 308 NKGASIIRMLQ---KYIGDGKYPILLRPSFQIPVGHPSEVEEIFDDISYNKGASIIRMLQ 364
N SI+ LQ Y Y I P + E + + I+ L
Sbjct: 515 NASGSILNTLQQLKFY---KPY---------ICDNDP-KYERLVNA--------ILDFLP 553
Query: 365 KYIGDGVNSSSDSLWYVPLSFCTQANPSEEVFSAEMSTRVTQ 406
K + + S L + L E +F E + + Q
Sbjct: 554 KIEENLICSKYTDLLRIALM-----AEDEAIF--EEAHKQVQ 588
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 34.5 bits (80), Expect = 0.19
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 325 KYPILLRPSFQIP---VGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGVNSSSDSLW 379
+P L P + P + P VE K R L + G G+ + W
Sbjct: 30 AHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESW 87
Score = 32.6 bits (75), Expect = 0.68
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 260 FALHVASKVLPFY----KDYFNIAYPLPKIDLVAIPVGHPSEVEEIFDDISYNKGASIIR 315
+ + L + + + PLP+ L + P VE K R
Sbjct: 12 YLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLAL--IFDPEGVEGALLAEGTTKATFQYR 69
Query: 316 MLQKYIGDG 324
L + G G
Sbjct: 70 ALSRLTGRG 78
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 34.6 bits (78), Expect = 0.21
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 11/86 (12%)
Query: 692 GSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG-----------NL 740
G N + L+ Q Q + HE H W L
Sbjct: 235 GGLEHRNSTALLCSRKDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQL 294
Query: 741 VTMEWWTHLWLNEGYASFVEFLCVHH 766
+ LW EG S+ + +H
Sbjct: 295 EKESYTEQLWFYEGMTSYFDDYLLHT 320
>2gno_A DNA polymerase III, gamma subunit-related protein; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: DNA; 2.00A
{Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Length = 305
Score = 33.2 bits (76), Expect = 0.45
Identities = 10/71 (14%), Positives = 27/71 (38%)
Query: 452 LDRLSLLDDLFALAQVGEVSLVEVLKMIQSMTHEDNYTVWITICNCLQKIDLLLSNTEYH 511
L+ LL + + G ++ E+L+ + ++ + ++ + N + D L
Sbjct: 190 LETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQVTNTITGKDAFLLIQRLT 249
Query: 512 HLFYQFGPVKS 522
+ +S
Sbjct: 250 RIILHENTWES 260
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.6 bits (71), Expect = 1.1
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 423 GTVGY-YRVKYPRETLAQFIPSVEDKSIPPLDRL 455
G+VG +V Y E + S + +PPL R+
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRI 147
Score = 31.6 bits (71), Expect = 1.1
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 613 GTVGY-YRVKYPRETLAQFIPSVEDKSIPPLDRL 645
G+VG +V Y E + S + +PPL R+
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRI 147
Score = 30.1 bits (67), Expect = 3.3
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 561 SDGVLVRV-YTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVALNPGTVGYYR 619
S G+ ++V Y+ K +KV P + L +
Sbjct: 115 SVGMAIQVNYSSEVKENSVDSD--DKAKVPPLIR--IVSGLELSDT-----KQKGKKFLV 165
Query: 620 VKY-PRETLAQFIPSVE 635
+ Y P E +A +P E
Sbjct: 166 IAYEPFENIAIELPPNE 182
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 31.0 bits (70), Expect = 2.4
Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 1016 ELAWDFLKNNYATFTERYKGGLLGRLVKHTTENFASESHAQEVTEFFTKNPTSWIERTVQ 1075
+ D+ + NY E + L ++ E+ + A+ + T+
Sbjct: 351 DHNKDYFRANYNALREELA-KIPTNLEGYSKESLEALDAAKTALNYNLNRNKQAELDTLV 409
Query: 1076 QSVETIRLNSE 1086
+++ +
Sbjct: 410 ANLKAALQGLK 420
Score = 30.6 bits (69), Expect = 2.8
Identities = 9/83 (10%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 879 ELAWEFLKNNYATFTERYKGGLLGRLVKHTTENFASESHAQEVTEFFTKNPTSWIERTVQ 938
+ ++ + NY E + L ++ E+ + A+ + T+
Sbjct: 351 DHNKDYFRANYNALREELA-KIPTNLEGYSKESLEALDAAKTALNYNLNRNKQAELDTLV 409
Query: 939 QSVETIRLNSECLKRDGEALYQN 961
+++ + +L +N
Sbjct: 410 ANLKAALQGLKPAVTHSGSLDEN 432
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase;
HET: PE5; 1.93A {Bacillus subtilis}
Length = 527
Score = 29.8 bits (66), Expect = 5.8
Identities = 33/203 (16%), Positives = 53/203 (26%), Gaps = 18/203 (8%)
Query: 604 KIDLVALNPGTVGYYRVKY--PRETLAQFIPSVEDKSIPPLDRLSLLDDLFACHGELGPS 661
++ L P V YYR K + + + P + HG
Sbjct: 76 HVEADGLEPNKVYYYRFKTGHELSPVGKTKTLPAPGANVPQMTFAFASCQQYEHGYYTAY 135
Query: 662 HLSGSVSSGRLSEHIGY----HPTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTS 717
+ Y P E+ S G E L YR S
Sbjct: 136 KHMAKEKLDLVFHLGDYIYEYGPNEYVSKTGNVRTHNSAEIITLQDYRNRHAQYRSDANL 195
Query: 718 AITRQNIALVVG---HELAHQWFG----NLVTMEWWTHLWLNEGYASFVEFLCVHHLF-- 768
VV HE+ + + ++E + A + E + +
Sbjct: 196 KAAHAAFPWVVTWDDHEVENNYANKIPEKGQSVEAFVLRRAAAYQA-YYEHMPLRISSLP 254
Query: 769 --PEYDIWTQFVTDNLVRALELD 789
P+ ++ F NL LD
Sbjct: 255 NGPDMQLYRHFTYGNLASFNVLD 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.396
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,950,628
Number of extensions: 1046776
Number of successful extensions: 2287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2179
Number of HSP's successfully gapped: 96
Length of query: 1102
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 998
Effective length of database: 3,798,009
Effective search space: 3790412982
Effective search space used: 3790412982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.8 bits)