Query psy5252
Match_columns 285
No_of_seqs 185 out of 1923
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 21:41:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2271 UhpC Sugar phosphate p 99.9 6.9E-25 1.5E-29 183.7 7.1 254 1-260 126-435 (448)
2 PRK09556 uhpT sugar phosphate 99.8 4.8E-21 1E-25 170.7 7.4 253 1-258 131-448 (467)
3 PRK11663 regulatory protein Uh 99.8 1.3E-20 2.9E-25 166.4 10.0 249 2-256 121-421 (434)
4 COG2814 AraJ Arabinose efflux 99.8 8.7E-21 1.9E-25 160.7 7.6 243 2-258 111-385 (394)
5 KOG1330|consensus 99.8 1.5E-21 3.2E-26 165.3 0.4 234 1-238 130-417 (493)
6 TIGR00893 2A0114 d-galactonate 99.8 1.7E-19 3.6E-24 156.6 11.5 250 1-256 91-396 (399)
7 KOG2532|consensus 99.8 2.5E-20 5.4E-25 163.7 5.3 253 1-259 137-447 (466)
8 PRK03545 putative arabinose tr 99.8 1.4E-19 3.1E-24 157.7 9.8 240 2-257 107-378 (390)
9 TIGR00894 2A0114euk Na(+)-depe 99.8 6.2E-20 1.3E-24 163.6 6.3 250 1-257 140-448 (465)
10 TIGR00903 2A0129 major facilit 99.8 8.3E-19 1.8E-23 151.3 11.2 238 1-255 88-361 (368)
11 PRK11273 glpT sn-glycerol-3-ph 99.8 1.3E-18 2.8E-23 154.6 12.1 253 2-260 130-436 (452)
12 PRK11551 putative 3-hydroxyphe 99.8 8.8E-19 1.9E-23 153.4 8.8 247 1-254 112-391 (406)
13 TIGR02332 HpaX 4-hydroxyphenyl 99.8 1.3E-18 2.8E-23 152.7 8.2 241 1-248 105-410 (412)
14 PRK09952 shikimate transporter 99.8 9.5E-19 2.1E-23 154.7 7.3 249 1-257 134-431 (438)
15 PRK11010 ampG muropeptide tran 99.8 1.9E-18 4.1E-23 154.7 8.9 249 2-258 117-402 (491)
16 PRK10406 alpha-ketoglutarate t 99.8 1.2E-18 2.6E-23 153.9 7.5 242 1-256 133-421 (432)
17 PRK10642 proline/glycine betai 99.8 3.4E-19 7.4E-24 159.7 3.3 251 1-258 127-429 (490)
18 TIGR00712 glpT glycerol-3-phos 99.7 9E-18 1.9E-22 148.6 12.0 250 2-257 128-431 (438)
19 PRK10489 enterobactin exporter 99.7 2.1E-18 4.5E-23 151.7 7.9 245 2-255 120-395 (417)
20 PRK12307 putative sialic acid 99.7 2.7E-18 5.9E-23 151.3 7.8 238 1-246 115-395 (426)
21 PLN00028 nitrate transmembrane 99.7 4E-18 8.8E-23 152.2 8.9 250 2-259 134-433 (476)
22 PRK15075 citrate-proton sympor 99.7 7.7E-18 1.7E-22 148.8 8.2 227 1-238 126-398 (434)
23 TIGR00890 2A0111 Oxalate/Forma 99.7 8.7E-18 1.9E-22 145.1 8.1 241 2-252 101-375 (377)
24 TIGR00892 2A0113 monocarboxyla 99.7 1.6E-17 3.5E-22 147.6 9.6 248 2-257 118-419 (455)
25 PRK10213 nepI ribonucleoside t 99.7 2.6E-17 5.7E-22 143.6 10.4 237 1-252 117-384 (394)
26 PRK03893 putative sialic acid 99.7 2.2E-17 4.7E-22 148.4 9.2 244 2-252 118-446 (496)
27 TIGR00897 2A0118 polyol permea 99.7 3.8E-17 8.2E-22 143.0 10.3 247 2-257 115-399 (402)
28 PRK03699 putative transporter; 99.7 8.8E-17 1.9E-21 140.3 11.3 244 2-259 105-380 (394)
29 COG2223 NarK Nitrate/nitrite t 99.7 6.7E-17 1.4E-21 136.1 9.5 240 7-257 119-399 (417)
30 PRK11902 ampG muropeptide tran 99.7 4.9E-17 1.1E-21 142.3 8.7 245 3-254 105-385 (402)
31 PRK09705 cynX putative cyanate 99.7 7.2E-17 1.6E-21 140.8 9.7 241 1-257 106-379 (393)
32 PRK10473 multidrug efflux syst 99.7 3.2E-17 6.9E-22 143.0 7.4 231 2-243 101-358 (392)
33 TIGR00900 2A0121 H+ Antiporter 99.7 2.3E-17 4.9E-22 141.9 5.4 227 2-235 102-364 (365)
34 KOG2533|consensus 99.7 6.2E-17 1.3E-21 142.8 8.0 162 1-168 143-337 (495)
35 TIGR00899 2A0120 sugar efflux 99.7 5.6E-17 1.2E-21 140.4 7.5 242 2-256 97-371 (375)
36 PRK09874 drug efflux system pr 99.7 2.5E-16 5.5E-21 137.9 11.7 246 2-256 117-395 (408)
37 PRK10091 MFS transport protein 99.7 7.1E-17 1.5E-21 140.4 8.1 241 1-256 100-373 (382)
38 TIGR00881 2A0104 phosphoglycer 99.7 3.1E-17 6.6E-22 141.8 4.6 233 2-240 93-378 (379)
39 TIGR00883 2A0106 metabolite-pr 99.7 1.6E-16 3.5E-21 138.0 9.0 235 1-246 105-388 (394)
40 PRK15011 sugar efflux transpor 99.7 2.5E-16 5.4E-21 137.5 9.5 245 6-256 119-388 (393)
41 PRK11646 multidrug resistance 99.7 7E-16 1.5E-20 134.9 11.8 238 2-254 109-383 (400)
42 PRK05122 major facilitator sup 99.7 4.2E-16 9E-21 136.3 9.6 240 1-256 121-386 (399)
43 TIGR00887 2A0109 phosphate:H+ 99.6 3.1E-16 6.8E-21 141.1 8.4 252 1-255 124-485 (502)
44 PRK12382 putative transporter; 99.6 6.9E-16 1.5E-20 134.6 10.3 239 1-256 121-386 (392)
45 PRK15402 multidrug efflux syst 99.6 4.3E-16 9.2E-21 136.5 8.0 165 2-175 111-286 (406)
46 PRK06814 acylglycerophosphoeth 99.6 8.5E-16 1.8E-20 150.9 10.6 245 1-252 117-415 (1140)
47 TIGR00879 SP MFS transporter, 99.6 1.7E-16 3.7E-21 141.2 5.1 249 1-257 136-468 (481)
48 PRK10077 xylE D-xylose transpo 99.6 6.4E-16 1.4E-20 138.2 8.5 83 1-85 129-219 (479)
49 TIGR00891 2A0112 putative sial 99.6 4.6E-16 9.9E-21 135.8 6.6 237 1-243 109-400 (405)
50 PRK11195 lysophospholipid tran 99.6 2.7E-15 5.9E-20 130.9 9.6 247 1-256 97-377 (393)
51 TIGR00710 efflux_Bcr_CflA drug 99.6 2.5E-15 5.5E-20 130.4 9.2 165 1-175 102-277 (385)
52 TIGR01272 gluP glucose/galacto 99.6 1.8E-15 3.9E-20 127.6 7.8 236 1-245 19-301 (310)
53 PRK11102 bicyclomycin/multidru 99.6 3.2E-15 6.9E-20 129.6 9.0 166 2-175 89-265 (377)
54 PRK10504 putative transporter; 99.6 1.7E-15 3.8E-20 135.2 7.3 82 1-83 107-188 (471)
55 PRK09528 lacY galactoside perm 99.6 2.2E-15 4.7E-20 132.7 6.6 230 24-257 137-401 (420)
56 PF05977 MFS_3: Transmembrane 99.6 1.2E-15 2.6E-20 136.5 4.6 247 2-256 113-391 (524)
57 PRK15034 nitrate/nitrite trans 99.6 1.2E-14 2.5E-19 127.4 9.3 237 2-256 138-451 (462)
58 PRK15403 multidrug efflux syst 99.6 1.9E-14 4.1E-19 126.4 9.7 110 1-114 113-222 (413)
59 PRK10054 putative transporter; 99.6 1.3E-14 2.8E-19 126.7 8.7 233 3-246 107-371 (395)
60 KOG3764|consensus 99.5 3E-15 6.5E-20 124.9 4.3 246 1-259 168-454 (464)
61 PRK03633 putative MFS family t 99.5 7.4E-15 1.6E-19 127.7 6.7 234 1-252 103-365 (381)
62 TIGR01299 synapt_SV2 synaptic 99.5 8.9E-15 1.9E-19 135.3 7.4 84 1-85 264-359 (742)
63 cd06174 MFS The Major Facilita 99.5 1.6E-14 3.4E-19 123.4 7.7 230 2-256 97-349 (352)
64 TIGR00902 2A0127 phenyl propri 99.5 1.3E-14 2.9E-19 126.1 7.0 236 2-252 104-372 (382)
65 PRK14995 methyl viologen resis 99.5 6.9E-15 1.5E-19 132.1 5.4 83 1-84 103-186 (495)
66 PRK08633 2-acyl-glycerophospho 99.5 5.5E-14 1.2E-18 138.4 11.9 245 1-250 112-401 (1146)
67 PRK10133 L-fucose transporter; 99.5 3.7E-14 8E-19 125.4 9.5 238 1-246 126-420 (438)
68 TIGR00898 2A0119 cation transp 99.5 2.1E-14 4.6E-19 129.3 8.1 247 1-257 189-493 (505)
69 TIGR00711 efflux_EmrB drug res 99.5 3.5E-15 7.6E-20 133.7 2.1 83 1-84 99-181 (485)
70 TIGR00895 2A0115 benzoate tran 99.5 1.1E-14 2.3E-19 126.8 4.5 83 1-84 114-196 (398)
71 TIGR00805 oat sodium-independe 99.5 8.1E-14 1.7E-18 128.1 10.3 166 1-170 181-397 (633)
72 PF07690 MFS_1: Major Facilita 99.5 1.2E-14 2.6E-19 124.4 4.0 169 1-175 94-278 (352)
73 PRK11043 putative transporter; 99.5 1E-13 2.2E-18 121.3 8.7 158 2-174 104-272 (401)
74 TIGR00792 gph sugar (Glycoside 99.5 1.6E-13 3.5E-18 121.4 9.6 231 3-237 110-383 (437)
75 PRK11128 putative 3-phenylprop 99.5 5.8E-14 1.3E-18 122.1 6.6 234 2-249 104-369 (382)
76 TIGR00901 2A0125 AmpG-related 99.5 2.6E-13 5.6E-18 116.8 10.4 164 3-173 94-278 (356)
77 TIGR00885 fucP L-fucose:H+ sym 99.5 3.2E-13 6.9E-18 118.4 10.8 233 2-245 104-398 (410)
78 PRK11652 emrD multidrug resist 99.5 1.7E-13 3.8E-18 119.6 7.8 156 2-169 106-272 (394)
79 TIGR02718 sider_RhtX_FptX side 99.4 7.8E-13 1.7E-17 115.4 11.4 231 10-252 115-384 (390)
80 KOG2504|consensus 99.4 8.1E-14 1.8E-18 124.2 3.7 252 1-259 144-476 (509)
81 TIGR00896 CynX cyanate transpo 99.4 1.8E-13 3.9E-18 117.8 5.5 155 2-171 97-263 (355)
82 TIGR00886 2A0108 nitrite extru 99.4 1.3E-12 2.8E-17 112.8 10.0 166 2-173 101-294 (366)
83 TIGR00882 2A0105 oligosacchari 99.4 1.3E-12 2.9E-17 114.1 8.0 243 3-255 110-391 (396)
84 COG2807 CynX Cyanate permease 99.4 5.1E-12 1.1E-16 104.9 10.0 228 2-244 109-370 (395)
85 COG0738 FucP Fucose permease [ 99.3 4.3E-12 9.4E-17 106.7 9.1 242 2-252 114-402 (422)
86 PRK09669 putative symporter Ya 99.3 1.6E-11 3.6E-16 108.9 9.8 228 5-237 122-391 (444)
87 PRK10207 dipeptide/tripeptide 99.3 2.2E-11 4.9E-16 109.0 10.2 79 1-81 114-194 (489)
88 PF11700 ATG22: Vacuole efflux 99.3 4E-11 8.7E-16 106.4 10.7 247 6-257 140-466 (477)
89 PRK09584 tppB putative tripept 99.2 2.5E-11 5.4E-16 109.1 9.2 69 2-71 122-192 (500)
90 KOG0252|consensus 99.2 8.2E-12 1.8E-16 106.5 3.0 265 1-266 153-505 (538)
91 PRK10429 melibiose:sodium symp 99.2 8.8E-11 1.9E-15 105.1 9.7 232 5-237 119-396 (473)
92 TIGR00889 2A0110 nucleoside tr 99.1 2.3E-11 5E-16 107.1 3.8 217 38-259 140-402 (418)
93 TIGR00924 yjdL_sub1_fam amino 99.1 4.3E-10 9.4E-15 100.5 11.0 71 2-73 112-185 (475)
94 TIGR00788 fbt folate/biopterin 99.1 2E-11 4.3E-16 108.9 2.3 226 3-236 131-415 (468)
95 KOG3626|consensus 99.1 3.8E-10 8.3E-15 102.5 9.4 166 1-170 246-459 (735)
96 KOG0569|consensus 99.0 5.8E-10 1.3E-14 98.0 7.2 83 2-85 126-209 (485)
97 PF13347 MFS_2: MFS/sugar tran 99.0 3.6E-10 7.8E-15 99.9 5.8 227 4-237 115-387 (428)
98 PF00083 Sugar_tr: Sugar (and 99.0 2.4E-12 5.2E-17 114.4 -8.2 84 1-85 111-196 (451)
99 PF03209 PUCC: PUCC protein; 99.0 3.3E-09 7.1E-14 90.2 10.8 227 2-234 99-363 (403)
100 PF03137 OATP: Organic Anion T 99.0 1E-10 2.2E-15 105.3 0.1 166 1-170 150-372 (539)
101 KOG2563|consensus 99.0 6.2E-09 1.3E-13 89.1 10.4 166 9-175 157-336 (480)
102 PRK11462 putative transporter; 98.9 8.7E-09 1.9E-13 91.9 10.6 158 7-174 124-297 (460)
103 PRK09848 glucuronide transport 98.8 1.1E-08 2.4E-13 91.0 8.8 229 3-237 120-391 (448)
104 TIGR00806 rfc RFC reduced fola 98.8 1.3E-07 2.8E-12 82.7 12.1 82 1-85 124-207 (511)
105 KOG0253|consensus 98.8 3.9E-08 8.5E-13 82.3 8.4 80 2-85 176-255 (528)
106 COG2211 MelB Na+/melibiose sym 98.7 1.9E-07 4.1E-12 81.7 12.8 231 3-237 123-399 (467)
107 PRK15462 dipeptide/tripeptide 98.7 2.3E-07 4.9E-12 82.7 12.1 69 3-72 111-181 (493)
108 TIGR00880 2_A_01_02 Multidrug 98.6 9.8E-08 2.1E-12 70.1 5.8 80 2-82 61-140 (141)
109 TIGR01301 GPH_sucrose GPH fami 98.6 6.3E-08 1.4E-12 85.9 5.4 80 5-84 127-222 (477)
110 PF01306 LacY_symp: LacY proto 98.6 8.1E-07 1.8E-11 76.9 11.2 241 10-257 122-398 (412)
111 COG2270 Permeases of the major 98.5 4.7E-08 1E-12 83.3 3.2 249 3-257 126-427 (438)
112 TIGR00889 2A0110 nucleoside tr 98.5 1.7E-07 3.8E-12 82.6 6.8 85 2-86 318-408 (418)
113 PRK15462 dipeptide/tripeptide 98.4 1.6E-07 3.5E-12 83.7 2.3 139 116-259 26-189 (493)
114 KOG4686|consensus 98.4 4.2E-08 9.1E-13 79.3 -1.3 243 1-255 145-439 (459)
115 TIGR00924 yjdL_sub1_fam amino 98.3 8.3E-08 1.8E-12 86.0 -0.3 136 119-259 30-192 (475)
116 PRK05122 major facilitator sup 98.3 1.4E-06 3.1E-11 76.2 6.9 79 2-81 312-390 (399)
117 PRK10207 dipeptide/tripeptide 98.3 2.1E-07 4.6E-12 83.5 0.9 103 156-258 66-193 (489)
118 KOG2615|consensus 98.3 2.1E-07 4.5E-12 78.2 0.5 74 11-84 139-217 (451)
119 PRK10489 enterobactin exporter 98.2 2.5E-06 5.4E-11 75.2 6.1 83 3-86 323-405 (417)
120 TIGR00881 2A0104 phosphoglycer 98.2 3.7E-07 8.1E-12 78.7 -0.1 127 127-258 22-170 (379)
121 PRK09584 tppB putative tripept 98.2 6.7E-07 1.5E-11 80.6 1.4 137 118-259 40-201 (500)
122 PRK12382 putative transporter; 98.1 5.7E-06 1.2E-10 72.2 6.5 79 2-81 312-390 (392)
123 PRK10054 putative transporter; 98.1 5.3E-07 1.1E-11 78.9 -0.5 130 121-256 29-179 (395)
124 TIGR00903 2A0129 major facilit 98.1 4.6E-07 9.9E-12 78.5 -1.1 125 128-257 19-163 (368)
125 COG2271 UhpC Sugar phosphate p 98.1 2.2E-06 4.9E-11 73.2 2.9 128 132-264 61-211 (448)
126 PRK09874 drug efflux system pr 98.1 5.5E-06 1.2E-10 72.6 5.2 80 2-82 321-400 (408)
127 PTZ00207 hypothetical protein; 98.0 1.3E-05 2.9E-10 72.9 7.2 81 2-85 130-210 (591)
128 PRK10213 nepI ribonucleoside t 97.9 3.4E-06 7.4E-11 73.8 1.8 116 130-250 50-186 (394)
129 PF06609 TRI12: Fungal trichot 97.9 9.8E-05 2.1E-09 67.2 10.9 81 2-84 141-221 (599)
130 TIGR00891 2A0112 putative sial 97.9 4.8E-06 1E-10 72.6 2.6 118 128-250 40-180 (405)
131 TIGR00879 SP MFS transporter, 97.9 1.5E-05 3.2E-10 71.0 5.5 75 10-85 401-475 (481)
132 TIGR00900 2A0121 H+ Antiporter 97.9 7.5E-07 1.6E-11 76.5 -2.9 107 150-256 44-176 (365)
133 PF03825 Nuc_H_symport: Nucleo 97.9 2.5E-05 5.4E-10 68.3 6.4 229 7-241 106-371 (400)
134 TIGR00892 2A0113 monocarboxyla 97.9 1.9E-06 4.1E-11 76.9 -0.8 73 2-74 343-415 (455)
135 TIGR00895 2A0115 benzoate tran 97.9 4.3E-06 9.3E-11 72.7 1.4 107 150-256 62-189 (398)
136 TIGR01299 synapt_SV2 synaptic 97.9 2.2E-05 4.7E-10 73.6 5.9 80 3-85 659-738 (742)
137 PRK09705 cynX putative cyanate 97.9 4.2E-05 9E-10 66.9 7.4 85 2-86 302-387 (393)
138 TIGR00710 efflux_Bcr_CflA drug 97.9 1.6E-06 3.6E-11 75.1 -1.5 124 129-257 34-178 (385)
139 PRK11551 putative 3-hydroxyphe 97.9 2.5E-05 5.4E-10 68.4 5.9 79 3-81 319-397 (406)
140 TIGR02332 HpaX 4-hydroxyphenyl 97.9 3.5E-06 7.6E-11 74.2 0.4 124 129-257 37-187 (412)
141 PF07690 MFS_1: Major Facilita 97.9 5.6E-07 1.2E-11 76.9 -4.7 120 130-254 27-167 (352)
142 PF03825 Nuc_H_symport: Nucleo 97.9 4.8E-05 1E-09 66.6 7.2 83 2-84 311-399 (400)
143 TIGR00886 2A0108 nitrite extru 97.8 3.1E-06 6.7E-11 73.0 -0.4 122 127-253 29-182 (366)
144 TIGR00711 efflux_EmrB drug res 97.8 3.1E-06 6.6E-11 76.0 -0.4 124 129-257 31-175 (485)
145 KOG0254|consensus 97.8 3.6E-05 7.7E-10 69.8 6.5 84 1-86 151-235 (513)
146 KOG0255|consensus 97.8 3.9E-05 8.4E-10 69.7 6.5 80 1-85 180-259 (521)
147 PRK09528 lacY galactoside perm 97.8 1.6E-05 3.4E-10 70.2 3.8 81 3-84 326-407 (420)
148 KOG2325|consensus 97.8 0.0007 1.5E-08 59.9 13.7 86 2-88 140-237 (488)
149 TIGR00769 AAA ADP/ATP carrier 97.8 0.0026 5.6E-08 56.7 16.8 158 12-170 149-333 (472)
150 TIGR00890 2A0111 Oxalate/Forma 97.8 2.6E-05 5.7E-10 67.1 4.3 69 3-72 306-374 (377)
151 PRK10642 proline/glycine betai 97.8 6.6E-05 1.4E-09 67.7 7.0 80 7-87 357-436 (490)
152 cd06174 MFS The Major Facilita 97.8 4.6E-05 9.9E-10 64.9 5.6 74 2-76 275-348 (352)
153 TIGR00894 2A0114euk Na(+)-depe 97.8 1.4E-06 3E-11 77.9 -4.0 109 151-259 87-219 (465)
154 PF05977 MFS_3: Transmembrane 97.7 1.8E-05 3.8E-10 71.6 2.9 105 151-255 56-186 (524)
155 TIGR00882 2A0105 oligosacchari 97.7 1.2E-05 2.5E-10 70.4 1.6 127 124-256 27-180 (396)
156 PLN00028 nitrate transmembrane 97.7 4.1E-05 8.8E-10 68.8 4.8 109 150-258 81-218 (476)
157 PRK03633 putative MFS family t 97.7 0.0001 2.2E-09 64.2 6.9 70 3-73 296-365 (381)
158 PRK11102 bicyclomycin/multidru 97.7 2.6E-06 5.6E-11 73.8 -3.3 123 129-256 20-163 (377)
159 PRK11663 regulatory protein Uh 97.7 6.2E-05 1.3E-09 66.8 5.4 68 14-82 359-426 (434)
160 PRK03545 putative arabinose tr 97.7 0.00015 3.3E-09 63.3 7.6 78 3-82 305-382 (390)
161 PRK10091 MFS transport protein 97.7 6.9E-06 1.5E-10 71.5 -0.9 120 129-253 32-172 (382)
162 PRK11043 putative transporter; 97.7 1.1E-05 2.3E-10 70.8 0.2 122 130-256 36-178 (401)
163 TIGR00893 2A0114 d-galactonate 97.6 0.00011 2.5E-09 63.4 6.5 69 9-77 328-396 (399)
164 PRK11652 emrD multidrug resist 97.6 1.1E-05 2.3E-10 70.5 -0.3 121 128-253 36-177 (394)
165 COG3104 PTR2 Dipeptide/tripept 97.6 7.7E-05 1.7E-09 65.4 4.5 107 156-262 77-209 (498)
166 PF06609 TRI12: Fungal trichot 97.6 3.2E-05 6.8E-10 70.3 2.0 108 151-258 89-216 (599)
167 PRK15403 multidrug efflux syst 97.6 5.9E-06 1.3E-10 72.8 -2.6 104 151-254 62-186 (413)
168 PRK10473 multidrug efflux syst 97.6 6.1E-06 1.3E-10 72.0 -2.7 107 150-256 48-175 (392)
169 PRK10077 xylE D-xylose transpo 97.6 0.00016 3.5E-09 64.8 6.3 75 10-85 382-462 (479)
170 PRK14995 methyl viologen resis 97.6 1E-05 2.2E-10 73.0 -1.5 123 129-256 35-179 (495)
171 PRK11273 glpT sn-glycerol-3-ph 97.5 0.0001 2.2E-09 65.8 4.8 65 15-80 370-435 (452)
172 KOG1330|consensus 97.5 4E-06 8.6E-11 72.5 -4.0 130 130-264 63-214 (493)
173 PRK15011 sugar efflux transpor 97.5 0.00019 4.1E-09 62.8 6.1 74 6-82 319-392 (393)
174 PRK11010 ampG muropeptide tran 97.5 0.0016 3.5E-08 58.7 11.8 74 7-82 331-404 (491)
175 COG2223 NarK Nitrate/nitrite t 97.5 5.6E-05 1.2E-09 64.8 2.1 130 129-263 43-197 (417)
176 KOG2816|consensus 97.5 0.0012 2.7E-08 58.6 10.5 82 6-88 126-207 (463)
177 TIGR00899 2A0120 sugar efflux 97.5 0.00023 5E-09 61.5 5.8 77 2-81 298-374 (375)
178 KOG2615|consensus 97.5 5.2E-05 1.1E-09 64.2 1.6 84 150-233 78-181 (451)
179 PF11700 ATG22: Vacuole efflux 97.4 0.00033 7.1E-09 62.7 6.7 80 2-82 390-469 (477)
180 PRK11646 multidrug resistance 97.4 0.0001 2.2E-09 64.7 3.3 81 3-83 308-391 (400)
181 PRK09556 uhpT sugar phosphate 97.4 0.00019 4.2E-09 64.3 4.9 62 15-77 372-446 (467)
182 PF03092 BT1: BT1 family; Int 97.4 0.00074 1.6E-08 59.9 8.5 74 8-82 102-177 (433)
183 PRK15034 nitrate/nitrite trans 97.4 5.7E-05 1.2E-09 66.9 1.4 83 130-217 65-161 (462)
184 PRK03893 putative sialic acid 97.4 0.00021 4.5E-09 64.4 5.0 60 9-69 383-442 (496)
185 TIGR00712 glpT glycerol-3-phos 97.2 0.00027 5.9E-09 62.7 3.5 69 15-84 368-437 (438)
186 TIGR00883 2A0106 metabolite-pr 97.2 0.0002 4.4E-09 62.0 2.3 67 3-69 323-390 (394)
187 PRK09952 shikimate transporter 97.2 0.0011 2.3E-08 59.0 6.9 79 3-82 354-434 (438)
188 TIGR00805 oat sodium-independe 97.1 0.00039 8.5E-09 64.6 3.8 43 129-176 62-104 (633)
189 TIGR00898 2A0119 cation transp 97.1 0.00063 1.4E-08 61.5 4.9 78 4-85 422-499 (505)
190 TIGR00880 2_A_01_02 Multidrug 97.1 5E-05 1.1E-09 55.4 -1.9 106 151-256 9-135 (141)
191 PRK12307 putative sialic acid 97.1 0.00083 1.8E-08 59.2 5.3 51 10-61 339-389 (426)
192 TIGR00887 2A0109 phosphate:H+ 97.1 0.0013 2.9E-08 59.5 6.6 76 10-86 410-494 (502)
193 TIGR00902 2A0127 phenyl propri 97.0 0.0012 2.5E-08 57.6 5.7 69 2-73 303-372 (382)
194 PF00854 PTR2: POT family; In 97.0 0.0013 2.8E-08 57.1 5.8 73 2-75 43-118 (372)
195 PF03219 TLC: TLC ATP/ADP tran 97.0 0.095 2.1E-06 47.1 17.2 100 14-114 166-284 (491)
196 TIGR00897 2A0118 polyol permea 97.0 0.0018 3.8E-08 56.9 6.2 72 3-77 327-398 (402)
197 PRK10504 putative transporter; 96.9 0.0014 3.1E-08 58.6 5.1 55 2-56 363-417 (471)
198 TIGR02718 sider_RhtX_FptX side 96.9 0.002 4.3E-08 56.3 5.8 67 6-73 317-384 (390)
199 TIGR00901 2A0125 AmpG-related 96.9 0.00015 3.2E-09 62.4 -1.4 55 202-256 102-175 (356)
200 TIGR00788 fbt folate/biopterin 96.9 0.0033 7.1E-08 56.4 7.1 80 3-82 362-447 (468)
201 COG2270 Permeases of the major 96.9 0.0011 2.4E-08 57.1 3.8 83 1-84 350-432 (438)
202 KOG0255|consensus 96.8 0.00033 7.1E-09 63.7 0.2 103 150-256 128-252 (521)
203 TIGR00792 gph sugar (Glycoside 96.8 0.0018 3.8E-08 57.4 4.8 56 2-58 321-383 (437)
204 KOG3762|consensus 96.8 0.0021 4.5E-08 57.1 5.0 77 1-78 468-545 (618)
205 COG3104 PTR2 Dipeptide/tripept 96.7 0.0015 3.2E-08 57.5 3.3 79 2-82 127-207 (498)
206 PRK15402 multidrug efflux syst 96.6 0.0064 1.4E-07 53.3 6.8 79 2-82 319-397 (406)
207 KOG2532|consensus 96.5 0.00019 4E-09 64.0 -3.3 126 131-261 69-218 (466)
208 COG3202 ATP/ADP translocase [E 96.5 0.41 8.9E-06 42.6 16.8 101 14-114 170-286 (509)
209 PRK03699 putative transporter; 96.4 0.0038 8.3E-08 54.6 4.5 75 3-79 305-379 (394)
210 PRK06814 acylglycerophosphoeth 96.4 0.0042 9.1E-08 62.0 5.2 75 2-76 344-418 (1140)
211 KOG4686|consensus 96.4 0.0057 1.2E-07 50.3 4.9 81 3-83 363-445 (459)
212 PRK15075 citrate-proton sympor 96.4 0.0062 1.3E-07 54.0 5.3 56 3-59 342-398 (434)
213 COG2814 AraJ Arabinose efflux 96.4 0.018 3.9E-07 49.9 7.8 67 13-81 321-387 (394)
214 PF01306 LacY_symp: LacY proto 96.2 0.0074 1.6E-07 52.7 5.0 79 6-85 326-405 (412)
215 COG2807 CynX Cyanate permease 96.2 0.011 2.3E-07 50.3 5.7 78 1-78 305-383 (395)
216 PRK11902 ampG muropeptide tran 96.1 0.017 3.7E-07 50.6 6.9 67 5-76 320-386 (402)
217 TIGR00885 fucP L-fucose:H+ sym 96.1 0.00095 2.1E-08 58.8 -1.2 106 148-253 46-201 (410)
218 KOG3762|consensus 96.1 0.017 3.6E-07 51.6 6.3 116 150-268 416-556 (618)
219 TIGR00806 rfc RFC reduced fola 96.0 0.0013 2.8E-08 58.2 -0.8 111 125-241 51-182 (511)
220 TIGR01301 GPH_sucrose GPH fami 95.8 0.022 4.7E-07 51.1 6.1 84 2-85 390-476 (477)
221 PRK11128 putative 3-phenylprop 95.8 0.022 4.7E-07 49.6 6.1 69 2-73 303-372 (382)
222 TIGR00926 2A1704 Peptide:H+ sy 95.7 0.049 1.1E-06 50.9 8.2 76 2-77 95-179 (654)
223 KOG2504|consensus 95.7 0.004 8.7E-08 56.3 1.0 76 2-77 398-473 (509)
224 PRK10406 alpha-ketoglutarate t 95.7 0.033 7.2E-07 49.4 6.8 71 10-82 354-425 (432)
225 KOG3098|consensus 95.7 0.18 3.8E-06 44.9 11.0 52 1-52 111-162 (461)
226 PRK08633 2-acyl-glycerophospho 95.6 0.024 5.1E-07 56.7 6.0 72 2-73 332-403 (1146)
227 KOG0569|consensus 95.4 0.076 1.6E-06 47.5 7.9 77 9-87 385-461 (485)
228 PF05631 DUF791: Protein of un 95.2 0.14 3.1E-06 43.6 8.5 92 21-114 155-248 (354)
229 KOG0254|consensus 95.2 0.0071 1.5E-07 55.0 0.8 106 150-256 99-227 (513)
230 PRK11195 lysophospholipid tran 95.2 0.072 1.6E-06 46.6 7.1 65 2-68 303-368 (393)
231 PF06813 Nodulin-like: Nodulin 94.9 0.13 2.8E-06 41.9 7.3 80 3-85 107-186 (250)
232 TIGR00896 CynX cyanate transpo 94.9 0.022 4.7E-07 49.0 3.0 59 2-60 295-354 (355)
233 TIGR01272 gluP glucose/galacto 94.5 0.058 1.3E-06 45.6 4.5 64 2-68 240-303 (310)
234 PRK09848 glucuronide transport 94.3 0.038 8.2E-07 49.2 3.3 55 2-56 329-390 (448)
235 PRK09669 putative symporter Ya 94.3 0.049 1.1E-06 48.5 4.0 55 2-56 329-390 (444)
236 PF06963 FPN1: Ferroportin1 (F 94.2 1.2 2.5E-05 39.6 12.1 58 22-80 143-200 (432)
237 KOG3764|consensus 94.0 0.4 8.7E-06 41.6 8.4 54 21-75 99-152 (464)
238 COG0477 ProP Permeases of the 93.7 0.19 4.1E-06 41.1 6.2 70 2-72 104-177 (338)
239 PF00083 Sugar_tr: Sugar (and 93.3 0.0074 1.6E-07 53.7 -3.2 78 9-87 366-443 (451)
240 KOG2533|consensus 92.7 2.1 4.6E-05 38.8 11.4 117 24-167 77-193 (495)
241 PF07672 MFS_Mycoplasma: Mycop 92.2 0.49 1.1E-05 38.6 6.1 149 24-173 2-174 (267)
242 PF01770 Folate_carrier: Reduc 91.6 7.7 0.00017 34.2 13.2 73 11-84 112-185 (412)
243 KOG2816|consensus 91.6 0.049 1.1E-06 48.6 -0.2 107 153-259 75-199 (463)
244 PF03209 PUCC: PUCC protein; 91.5 0.58 1.3E-05 40.7 6.2 76 1-76 310-394 (403)
245 KOG0252|consensus 90.9 0.32 6.9E-06 43.0 4.0 70 15-86 429-503 (538)
246 PRK10429 melibiose:sodium symp 89.9 0.31 6.7E-06 43.9 3.3 55 2-56 334-395 (473)
247 PF03092 BT1: BT1 family; Int 89.9 1.9 4.1E-05 38.4 8.2 70 12-82 338-414 (433)
248 PRK10133 L-fucose transporter; 89.3 0.57 1.2E-05 41.7 4.5 70 2-73 357-426 (438)
249 PF12832 MFS_1_like: MFS_1 lik 89.2 0.25 5.3E-06 32.3 1.6 40 129-173 29-68 (77)
250 KOG2325|consensus 89.2 0.27 5.9E-06 43.9 2.3 79 2-81 398-476 (488)
251 PTZ00207 hypothetical protein; 88.3 22 0.00047 33.2 15.1 51 118-170 467-518 (591)
252 KOG0253|consensus 88.1 0.32 6.9E-06 41.9 1.9 75 7-84 449-523 (528)
253 TIGR00926 2A1704 Peptide:H+ sy 86.9 0.23 5E-06 46.5 0.5 62 200-261 102-184 (654)
254 PF05978 UNC-93: Ion channel r 86.6 0.92 2E-05 34.1 3.5 52 1-52 98-149 (156)
255 KOG3810|consensus 86.2 8.9 0.00019 33.0 9.3 73 12-85 114-187 (433)
256 PF13347 MFS_2: MFS/sugar tran 86.1 2.2 4.7E-05 37.8 6.3 56 1-56 324-386 (428)
257 COG2211 MelB Na+/melibiose sym 83.9 0.28 6.1E-06 43.7 -0.4 53 118-175 31-83 (467)
258 PRK11462 putative transporter; 80.6 2 4.3E-05 38.6 3.7 53 3-55 329-388 (460)
259 COG0738 FucP Fucose permease [ 77.8 1.4 3.1E-05 38.3 1.8 69 2-73 334-402 (422)
260 KOG0637|consensus 76.5 2.2 4.7E-05 37.9 2.5 44 8-51 158-202 (498)
261 KOG1237|consensus 75.5 4.5 9.7E-05 37.4 4.4 74 2-76 162-241 (571)
262 KOG3626|consensus 75.1 4.7 0.0001 38.2 4.5 43 129-171 612-654 (735)
263 PF00854 PTR2: POT family; In 74.8 1.4 3E-05 38.2 1.0 61 204-264 54-128 (372)
264 KOG3098|consensus 68.9 6.7 0.00015 35.1 3.9 52 1-53 362-413 (461)
265 PRK03612 spermidine synthase; 67.9 13 0.00029 34.0 5.7 64 4-69 122-186 (521)
266 PF03741 TerC: Integral membra 61.5 48 0.001 25.6 6.9 58 8-68 12-69 (183)
267 KOG3574|consensus 58.8 95 0.0021 27.5 8.6 39 131-170 397-435 (510)
268 PF02487 CLN3: CLN3 protein; 56.1 22 0.00048 31.3 4.7 73 5-83 125-198 (402)
269 PF15048 OSTbeta: Organic solu 55.8 9 0.00019 27.2 1.8 24 233-256 31-54 (125)
270 TIGR00769 AAA ADP/ATP carrier 51.5 46 0.001 30.1 6.1 59 13-72 287-346 (472)
271 PF06963 FPN1: Ferroportin1 (F 50.2 25 0.00054 31.4 4.1 40 219-258 160-199 (432)
272 PRK10297 PTS system N,N'-diace 49.4 36 0.00077 30.6 5.0 45 225-270 394-438 (452)
273 PF02990 EMP70: Endomembrane p 47.7 1.5E+02 0.0033 27.2 8.9 43 132-175 290-332 (521)
274 PF00558 Vpu: Vpu protein; In 45.3 57 0.0012 21.4 4.1 21 243-263 11-31 (81)
275 TIGR03716 R_switched_YkoY inte 44.0 1.7E+02 0.0036 23.4 8.5 46 8-53 9-54 (215)
276 PF11151 DUF2929: Protein of u 43.4 75 0.0016 19.3 5.8 41 36-77 10-50 (57)
277 PF03137 OATP: Organic Anion T 42.0 8.5 0.00018 35.4 0.0 51 120-170 468-518 (539)
278 COG0861 TerC Membrane protein 40.9 1.4E+02 0.0031 24.5 6.8 57 8-67 32-88 (254)
279 KOG1237|consensus 38.7 32 0.00069 32.0 3.1 55 1-55 467-521 (571)
280 PF06645 SPC12: Microsomal sig 38.4 1.1E+02 0.0024 19.8 4.7 38 30-71 10-47 (76)
281 PF04277 OAD_gamma: Oxaloaceta 36.8 55 0.0012 21.1 3.3 7 236-242 11-17 (79)
282 PF11368 DUF3169: Protein of u 36.4 2.3E+02 0.0051 23.0 11.1 25 27-51 9-33 (248)
283 PF06813 Nodulin-like: Nodulin 36.2 2.4E+02 0.0052 23.1 10.0 50 30-81 39-88 (250)
284 PF06779 DUF1228: Protein of u 33.9 1.4E+02 0.0031 19.8 6.3 60 8-71 10-69 (85)
285 PF03219 TLC: TLC ATP/ADP tran 33.7 1.5E+02 0.0033 27.0 6.6 58 15-73 305-363 (491)
286 PF04971 Lysis_S: Lysis protei 32.0 78 0.0017 20.0 3.1 6 237-242 31-36 (68)
287 PRK10697 DNA-binding transcrip 31.6 1.9E+02 0.0042 20.6 5.5 16 69-84 52-67 (118)
288 COG1455 CelB Phosphotransferas 31.6 1.3E+02 0.0028 26.9 5.5 40 225-265 379-418 (432)
289 KOG4332|consensus 31.2 48 0.001 27.8 2.7 74 5-79 357-430 (454)
290 PF10183 ESSS: ESSS subunit of 30.9 77 0.0017 22.0 3.4 28 57-84 58-85 (105)
291 PF01405 PsbT: Photosystem II 30.6 84 0.0018 16.1 2.8 11 75-85 18-28 (29)
292 COG0598 CorA Mg2+ and Co2+ tra 30.1 1.6E+02 0.0034 25.1 5.8 25 57-81 293-317 (322)
293 PF15061 DUF4538: Domain of un 28.6 86 0.0019 19.1 2.8 25 236-260 4-28 (58)
294 KOG4112|consensus 28.5 46 0.00099 22.4 1.7 40 223-264 37-76 (101)
295 PF06027 DUF914: Eukaryotic pr 28.4 20 0.00044 30.7 0.1 29 228-256 276-304 (334)
296 COG2056 Predicted permease [Ge 27.2 53 0.0012 28.4 2.4 28 237-264 190-217 (444)
297 PF13386 DsbD_2: Cytochrome C 27.1 3E+02 0.0065 21.4 10.8 32 139-170 149-180 (199)
298 COG2836 Uncharacterized conser 26.8 3.4E+02 0.0074 21.9 8.8 33 138-170 162-194 (232)
299 PF09911 DUF2140: Uncharacteri 26.3 53 0.0011 25.5 2.1 14 58-71 3-16 (187)
300 TIGR00939 2a57 Equilibrative N 25.2 3.7E+02 0.0081 24.1 7.5 41 2-47 116-156 (437)
301 PF11833 DUF3353: Protein of u 23.2 3.7E+02 0.0081 21.1 6.4 31 23-53 136-166 (194)
302 PRK10297 PTS system N,N'-diace 22.9 54 0.0012 29.5 1.8 36 45-82 394-429 (452)
303 PF06912 DUF1275: Protein of u 22.6 3E+02 0.0066 21.5 5.9 47 19-67 153-199 (209)
304 TIGR00739 yajC preprotein tran 22.6 2.1E+02 0.0045 18.9 4.1 10 251-260 13-22 (84)
305 PRK11875 psbT photosystem II r 22.6 1.3E+02 0.0028 15.6 2.9 11 75-85 18-28 (31)
306 TIGR02230 ATPase_gene1 F0F1-AT 21.9 2.8E+02 0.006 19.1 6.5 38 32-69 47-87 (100)
307 COG5336 Uncharacterized protei 20.8 3.1E+02 0.0067 19.2 6.4 53 24-76 38-91 (116)
308 PF04281 Tom22: Mitochondrial 20.6 3.5E+02 0.0077 19.9 5.3 27 16-42 59-85 (137)
309 TIGR00986 3a0801s05tom22 mitoc 20.1 3.3E+02 0.0073 20.1 5.0 27 15-41 56-82 (145)
No 1
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.91 E-value=6.9e-25 Score=183.67 Aligned_cols=254 Identities=14% Similarity=0.099 Sum_probs=188.8
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHH--HHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVG--STAFSVMGAWPWSLRVTPVLGACAVLLILF 78 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~--~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~ 78 (285)
+.|..+|..+|++...+++|+|++|||+..++++++.|+|..+.+++. +++..+++ ||..|++.++++++..++.++
T Consensus 126 lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~-w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 126 LNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG-WRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred HHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999999999999 88988875 999999999999999999999
Q ss_pred hccCCcCccc------------cCcccccc---ccHHH-HHHHHhhhhhhHHH-----------HHHHHHHHHHHHHHHh
Q psy5252 79 FMEDPERGEA------------EGRVTEER---TSFGE-DIRALCKNHRETWI-----------FLNLNWSIVADMTLYV 131 (285)
Q Consensus 79 ~~~~~~~~~~------------~~~~~~~~---~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 131 (285)
..+|+|++.. +..+++++ .+.++ -++.+++||..|++ +....|.|.|.....+
T Consensus 205 ~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~ 284 (448)
T COG2271 205 LLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKG 284 (448)
T ss_pred HhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcC
Confidence 9998775321 11011111 22233 35778899988872 2356789999888888
Q ss_pred cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc--eeee------eec-ccccc---cccccccccccc
Q psy5252 132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA--STLV------ANA-MLPSS---LAPSLPFSSSNS 199 (285)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~--~~~~------~~~-~~~~~---~~~~~~~~~~~~ 199 (285)
.+....+...++.- .+++.|++++|++|||+.+.++... .+.+ +.+ ..+.. +....++..+..
T Consensus 285 ~s~~~a~~a~~lfE-----~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~ 359 (448)
T COG2271 285 FSLVKANWAISLFE-----VAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFL 359 (448)
T ss_pred CCHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 88888888877776 7888899999999999875543333 2211 111 11111 223333334456
Q ss_pred CCcch---hhhhccccCCcch-----------hh-hccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy5252 200 TSLPL---VSSLDETAHRSDE-----------FL-AHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSL 260 (285)
Q Consensus 200 ~~~~~---~~~~~~~~p~~~r-----------~l-~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (285)
..+|+ .....|.+|++.. ++ |...+....|++.|.+||...|++..+..+++.+++..+..
T Consensus 360 IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 360 IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 66776 3445699999886 14 66788888889999999999999888888888777666543
No 2
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.83 E-value=4.8e-21 Score=170.73 Aligned_cols=253 Identities=11% Similarity=-0.014 Sum_probs=161.0
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc--CCchHHHHHhhHHHHHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM--GAWPWSLRVTPVLGACAVLLILF 78 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~--g~wr~~f~i~~~~~~~~~~l~~~ 78 (285)
++|++++...|...++++||+|++||++++|++..+.++|.++++++..++.+.. ++||..|.+.+++.++..++.++
T Consensus 131 l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 131 LSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred HHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 3688899999999999999999999999999999999999999999988777653 24999999988888777766666
Q ss_pred hccCCcCccc----c-----C-cccc-----ccccHHHHH-HHHhhhhhhHHHH-----------HHHHHHHHHHHHHHh
Q psy5252 79 FMEDPERGEA----E-----G-RVTE-----ERTSFGEDI-RALCKNHRETWIF-----------LNLNWSIVADMTLYV 131 (285)
Q Consensus 79 ~~~~~~~~~~----~-----~-~~~~-----~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 131 (285)
+.++.+++.. + . ..++ ++.+..+.+ +..+++|.+|... ....|.|.+....++
T Consensus 211 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g 290 (467)
T PRK09556 211 YGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELG 290 (467)
T ss_pred hCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 6665443210 0 0 0000 011112222 3367777776521 233466666555556
Q ss_pred cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee--eeee---cc--cccc--ccccccccccccCCc
Q psy5252 132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST--LVAN---AM--LPSS--LAPSLPFSSSNSTSL 202 (285)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~--~~~~---~~--~~~~--~~~~~~~~~~~~~~~ 202 (285)
.++.+.+...... .++.+++.++.|+++||+++|+...... .... .. .... ......+..+....+
T Consensus 291 ~s~~~a~~~~~~~-----~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 365 (467)
T PRK09556 291 FSKEDAINTFTLF-----EIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFG 365 (467)
T ss_pred CCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Confidence 5554444333322 2556778889999999999886543211 0111 11 1111 111111111112223
Q ss_pred ch---hhhhccccCCcchh-----------h-hccccchhhhhhhh------------hhhhHHHHHHHHHHHHHHHHHH
Q psy5252 203 PL---VSSLDETAHRSDEF-----------L-AHKSDEFLAHKSDE------------FLALQYALFITSFIEVLGGIFF 255 (285)
Q Consensus 203 ~~---~~~~~~~~p~~~r~-----------l-~~~~~p~~~G~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 255 (285)
+. .....|.+|++.|. + +.+++|.+.|.+.| ..+|+..|.+..++.+++.+..
T Consensus 366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 366 PQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 32 34566999998871 2 44688999999999 6789999988877777776665
Q ss_pred HHH
Q psy5252 256 LLG 258 (285)
Q Consensus 256 ~~~ 258 (285)
+..
T Consensus 446 ~~~ 448 (467)
T PRK09556 446 AIV 448 (467)
T ss_pred HHH
Confidence 543
No 3
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.83 E-value=1.3e-20 Score=166.41 Aligned_cols=249 Identities=12% Similarity=0.130 Sum_probs=155.5
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+..++...++++|++|+++|++++++++.+.++|..+++.+.+.+.+.++ ||+.|++.+++.++..++..+.++
T Consensus 121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~~~i~~~~~~~~~~~~~~ 199 (434)
T PRK11663 121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WRYGMMIAGIIAIVVGLFLCWRLR 199 (434)
T ss_pred HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4777888889999999999999999999999999999999999999999999886 999999988877766656666677
Q ss_pred CCcCccc--c-----Ccc----cc---ccccHHHHHH-HHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCC
Q psy5252 82 DPERGEA--E-----GRV----TE---ERTSFGEDIR-ALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPL 135 (285)
Q Consensus 82 ~~~~~~~--~-----~~~----~~---~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 135 (285)
|++++.. + ++. ++ ++.+.++.++ ..++++.++... ....|.|.+....++.++.
T Consensus 200 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~ 279 (434)
T PRK11663 200 DKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLV 279 (434)
T ss_pred CCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 6543210 0 000 00 0112222222 255666665421 1223445443333455554
Q ss_pred CcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhh--cccce-e--ee---eec-ccc--cc-ccccccccccccCCcc
Q psy5252 136 RRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSL--QLGAS-T--LV---ANA-MLP--SS-LAPSLPFSSSNSTSLP 203 (285)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~--~~~~~-~--~~---~~~-~~~--~~-~~~~~~~~~~~~~~~~ 203 (285)
+.+...+.. .++..+|.++.|+++||+.+++ ..... . .. ..+ ..+ .. ......+..+....++
T Consensus 280 ~a~~~~~~~-----~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 354 (434)
T PRK11663 280 TANSAVSMF-----ELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGP 354 (434)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhH
Confidence 444333322 2566778889999999994332 21111 0 00 000 111 11 1111111111112222
Q ss_pred ---hhhhhccccCCcch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 204 ---LVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 204 ---~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
....+.|..|++.| .+|.+++|.+.|++.|+.||+..|+..+++.+++++...
T Consensus 355 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 355 QMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 23456788988887 266789999999999999999999888777777665443
No 4
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.83 E-value=8.7e-21 Score=160.68 Aligned_cols=243 Identities=17% Similarity=0.139 Sum_probs=157.5
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|+..|.+++...++.++.+|++||++++++...+..++.++|.+++.++.+.+| ||..|++.+.++++..+..+..+|
T Consensus 111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5788899999999999999999999999999999999999999999999999997 999999999999999988888888
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
+++.+ ++. +.+.++ ....+|+|..+..+. ...+.-.+.....+++.+..+ ...+...
T Consensus 190 -~~~~~-~~~----~~~~~~-~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs-----~~Ll~~G 257 (394)
T COG2814 190 -PSEIS-GSL----PGPLRT-LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVS-----LVLLAFG 257 (394)
T ss_pred -CccCC-CCC----CcchhH-HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHH-----HHHHHHH
Confidence 22111 111 111222 334667777765221 111111122222233322222 2333445
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceee--e---eecc-cccc--ccccccccccccCCcchhhhhccccC--Ccch---
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTL--V---ANAM-LPSS--LAPSLPFSSSNSTSLPLVSSLDETAH--RSDE--- 217 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~---~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~r--- 217 (285)
++.++|..++|+++|| +.++....... + +.+. .... ......+..+.......+....+..+ |+.+
T Consensus 258 v~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a 336 (394)
T COG2814 258 IAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLA 336 (394)
T ss_pred HHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHH
Confidence 7788899999999999 55544433211 1 1111 1111 11111111223333333444443333 3333
Q ss_pred --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252 218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
++|++.|..++|.+.|+.|+....+..++..+++.++.+..
T Consensus 337 ~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 337 GSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 27889999999999999999999988887777777665543
No 5
>KOG1330|consensus
Probab=99.82 E-value=1.5e-21 Score=165.33 Aligned_cols=234 Identities=29% Similarity=0.390 Sum_probs=162.2
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+.|+|++.+.|.++++|+|.||.++|++++++++.+.++|..+|.+.+..+.++.+.|||.|+..++++++..++.+++.
T Consensus 130 ~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 130 FVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred HhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence 47999999999999999999999999999999999999999999999999999876699999999999999999999999
Q ss_pred cCCcCccccCccc-----cccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcC--CCCcchhHH
Q psy5252 81 EDPERGEAEGRVT-----EERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVL--PLRRSTAEA 142 (285)
Q Consensus 81 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 142 (285)
+||++.+.++... .+..+..++++.+.+++.+.. ...+.-|.|.+....+.+. .+..+...+
T Consensus 210 ~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg 289 (493)
T KOG1330|consen 210 REPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFG 289 (493)
T ss_pred cCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhh
Confidence 9998754333221 234456777887777666532 2234456676555444443 344455555
Q ss_pred HHHHHhhhccccchhhhhHHHhHHhhhhhcccc-------eeee-----eec--ccc-----ccc-ccccc---cccccc
Q psy5252 143 FQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA-------STLV-----ANA--MLP-----SSL-APSLP---FSSSNS 199 (285)
Q Consensus 143 ~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~-------~~~~-----~~~--~~~-----~~~-~~~~~---~~~~~~ 199 (285)
... ..++.+|..++|.++||+-+..+... .+.. +.+ ..+ ..+ .+.++ ....+.
T Consensus 290 ~vt----~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~ 365 (493)
T KOG1330|consen 290 GVT----CAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWF 365 (493)
T ss_pred hHH----HhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 444 35556667788999999766322211 0100 001 011 111 11111 111244
Q ss_pred CCcchhhhhccccCCcchh------------hhccccchhhhhhhhhh-hhH
Q psy5252 200 TSLPLVSSLDETAHRSDEF------------LAHKSDEFLAHKSDEFL-ALQ 238 (285)
Q Consensus 200 ~~~~~~~~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~-~~~ 238 (285)
..+++..+..|.+||+.|. +|.+-+|++.|.+.|+. |++
T Consensus 366 ~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 366 NWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred ccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 5566677788999999991 56688999999999864 344
No 6
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.81 E-value=1.7e-19 Score=156.55 Aligned_cols=250 Identities=17% Similarity=0.108 Sum_probs=162.1
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...++++|++|+|+|++++++.+...++|..+++.+++.+.+..+ ||+.|++.+++.++..++..+..
T Consensus 91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHhhhee
Confidence 36888889999999999999999999999999999999999999999999998886 99999999888877776666666
Q ss_pred cCCcCccccCccc----------------cccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcC
Q psy5252 81 EDPERGEAEGRVT----------------EERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVL 133 (285)
Q Consensus 81 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 133 (285)
+|+++++...+++ +++++..+..+..+++|.++... ....|.+.+.....+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (399)
T TIGR00893 170 PDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLS 249 (399)
T ss_pred cCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 6654322110000 00111223355667777765421 12223333333333444
Q ss_pred CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccce---e-----eee---ecccc--cc--ccc-c-ccccc
Q psy5252 134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAS---T-----LVA---NAMLP--SS--LAP-S-LPFSS 196 (285)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~---~-----~~~---~~~~~--~~--~~~-~-~~~~~ 196 (285)
+.+.+...... .++.+++.++.|+++||+++|+..... . +.. .+... .. ... . .....
T Consensus 250 ~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (399)
T TIGR00893 250 ILEAGFMASLP-----GIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFF 324 (399)
T ss_pred HHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 43333333322 255566788999999999998621110 0 000 01111 11 111 1 11111
Q ss_pred cccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHH
Q psy5252 197 SNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 197 ~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 256 (285)
..+......+.++|.+|+++|. ++..++|.+.|.+.|..| ++..+...+++.+++.+..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 325 GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 2234555678899999999882 667899999999999988 99988887777777665544
No 7
>KOG2532|consensus
Probab=99.80 E-value=2.5e-20 Score=163.71 Aligned_cols=253 Identities=16% Similarity=0.156 Sum_probs=179.0
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc-cCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV-MGAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~-~g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
+||+++|..+|+...+.++|.|++||++..++..++..+|.+++.+++|.+.+. +| |+++|++.++.+++..++++.+
T Consensus 137 lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 137 LQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999998 75 9999999999999999999888
Q ss_pred ccCCcCccccCcc----------cc--ccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCC
Q psy5252 80 MEDPERGEAEGRV----------TE--ERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLR 136 (285)
Q Consensus 80 ~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 136 (285)
..|.|++++...+ .+ .++....+++.+++++.+|. ......+.|.|.-...+++.++
T Consensus 216 ~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~ 295 (466)
T KOG2532|consen 216 YSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE 295 (466)
T ss_pred hcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh
Confidence 8887765432111 00 01112346888999998875 3445667788877778888888
Q ss_pred cchhHHHHHHHhhhccccchhhhhHHHhHHhhhhh----ccccee------------eeeecccc--ccc---ccccccc
Q psy5252 137 RSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSL----QLGAST------------LVANAMLP--SSL---APSLPFS 195 (285)
Q Consensus 137 ~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~----~~~~~~------------~~~~~~~~--~~~---~~~~~~~ 195 (285)
.|...++-. +...+..+++|+++||+.+|. ..++.+ +.+++... ..+ .+.+...
T Consensus 296 ~G~~salP~-----l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~ 370 (466)
T KOG2532|consen 296 TGFLSALPF-----LAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIG 370 (466)
T ss_pred hhHHHHHHH-----HHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHH
Confidence 888777655 334445679999999998751 112211 22333221 111 1111111
Q ss_pred ccccCCcchhhhhccccCCcchh----------hhccccchhhhhhh-h--hhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252 196 SSNSTSLPLVSSLDETAHRSDEF----------LAHKSDEFLAHKSD-E--FLALQYALFITSFIEVLGGIFFLLGS 259 (285)
Q Consensus 196 ~~~~~~~~~~~~~~~~~p~~~r~----------l~~~~~p~~~G~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
..+...+..+....|..|++... ++..++|.+.|.+. | ...|+..|++.+++.+++.+++.+..
T Consensus 371 ~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 371 LSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 11222233344444555555541 45589999999988 3 45799999999999999887777654
No 8
>PRK03545 putative arabinose transporter; Provisional
Probab=99.80 E-value=1.4e-19 Score=157.71 Aligned_cols=240 Identities=11% Similarity=0.065 Sum_probs=154.0
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+...++++|++|+|||++++|++..+.++|.+++|++++.+.++++ ||+.|++.+++.++..+......|
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~l~~~~~~~~~~ 185 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WRTTFLAIGGGALITLLLLIKLLP 185 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5777788889999999999999999999999999999999999999999999886 999999999888777666655566
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
|+++++ + +..++.+..+|+|.+++... ...+.+.+.....+.++...+..... ..
T Consensus 186 ~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~-----~~ 251 (390)
T PRK03545 186 LLPSEH---S------GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLL-----FG 251 (390)
T ss_pred CCCCCC---c------chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH-----HH
Confidence 543211 0 01234556777777654211 11222222222234444433333322 23
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceee-eee--c--ccccc---c-cccccccccccCCcc-hhhhhccccCCcch---
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTL-VAN--A--MLPSS---L-APSLPFSSSNSTSLP-LVSSLDETAHRSDE--- 217 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~-~~~--~--~~~~~---~-~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r--- 217 (285)
++.+++.++.|+++||++++........ ... . ..... + ....+...+.....+ ....+.|..|+ .|
T Consensus 252 ~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 330 (390)
T PRK03545 252 GAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVA 330 (390)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHH
Confidence 5667778899999999987753322111 011 0 11111 1 111111212222222 34556677664 44
Q ss_pred --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
.+|..+||.+.|.+.|+.|++..++..+.+.+++.+....
T Consensus 331 ~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 331 MALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 1566889999999999999999998888777777666543
No 9
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.79 E-value=6.2e-20 Score=163.57 Aligned_cols=250 Identities=16% Similarity=0.109 Sum_probs=158.2
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc-CCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM-GAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~-g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
++|++++...|...++++||+|+++|++++++.+.+..+|..+++++++.+.+.. + ||+.|++.+++.++..++.+.+
T Consensus 140 ~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 140 IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999874 5 9999999999888877777666
Q ss_pred ccCCcCccccCcc-c-----------cccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCC
Q psy5252 80 MEDPERGEAEGRV-T-----------EERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLR 136 (285)
Q Consensus 80 ~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 136 (285)
.+|.|+.+.+.++ + +++.+.+..++..++++.++. ......|.|.+.....+.+..+
T Consensus 219 ~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~ 298 (465)
T TIGR00894 219 PADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE 298 (465)
T ss_pred hcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH
Confidence 6665433221110 0 000111223666777777654 1223456666655555665555
Q ss_pred cchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc-----ee----e----eeecc--c-c-cc-ccc-ccccc--
Q psy5252 137 RSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA-----ST----L----VANAM--L-P-SS-LAP-SLPFS-- 195 (285)
Q Consensus 137 ~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~-----~~----~----~~~~~--~-~-~~-~~~-~~~~~-- 195 (285)
.+...+... ++..++.++.|+++||+++|+..+. .. . ...+. . . .. ... .+.+.
T Consensus 299 ~g~~~~~~~-----~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (465)
T TIGR00894 299 NGLLSSLPY-----LFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANA 373 (465)
T ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 554444332 4556667899999999887644322 11 0 00111 1 1 11 111 11111
Q ss_pred ccccCCcchhhhhccccCCcch-----------hhhccccchhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHH
Q psy5252 196 SSNSTSLPLVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFL---ALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 196 ~~~~~~~~~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
..............|..|+ .+ .++..++|.+.|.+.|.. +|+.+|.+.++..+++.++...
T Consensus 374 ~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 374 VSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 1111222233445566665 33 155578888888887653 4788888887777777766554
No 10
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.78 E-value=8.3e-19 Score=151.32 Aligned_cols=238 Identities=9% Similarity=-0.014 Sum_probs=149.3
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++++. .+...+.++|++|+|||++++++.+.+.++|.++++++++.+.+.++ ||+.|++.++++++..++.++.+
T Consensus 88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHc
Confidence 36788875 45666777999999999999999999999999999999999999886 99999999998888888888888
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
||+++++.+..+ . .+..+.+++++++|.+|. .+....|.|.+.. ..+.+.+ .+....+..
T Consensus 166 p~~p~~~~~~~~--~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-----~~~~~~l~~ 236 (368)
T TIGR00903 166 PALPFQAAEGFG--F-KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-----AGDAVALAI 236 (368)
T ss_pred CCCCCCCCCCcc--h-HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-----HHHHHHHHH
Confidence 887654322111 1 112235677888888765 2234556676653 2333321 222222222
Q ss_pred hccccchhhhhHHHhHHhhhhhcccc----eee--eeec---ccc--ccccccccccc---cccCCcchhhhhccccCCc
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGA----STL--VANA---MLP--SSLAPSLPFSS---SNSTSLPLVSSLDETAHRS 215 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~----~~~--~~~~---~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~ 215 (285)
..+.+..++++||..|++.++. ..+ ++.. ... ........... .....+..+++.+|.+|++
T Consensus 237 ----~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~ 312 (368)
T TIGR00903 237 ----LAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE 312 (368)
T ss_pred ----HHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh
Confidence 2233456889999876532221 110 1111 111 11111111111 1222333567889999999
Q ss_pred chh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5252 216 DEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFF 255 (285)
Q Consensus 216 ~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (285)
.|. +++..+|.+.|.+.. +.+..|...++..+++++..
T Consensus 313 ~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 313 LHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 982 445678888887764 66677776666666666554
No 11
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.78 E-value=1.3e-18 Score=154.55 Aligned_cols=253 Identities=13% Similarity=0.060 Sum_probs=147.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHH-HHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGL-GYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~-g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+|++.+...|...+.+.|++|+|+|++++|+++.+.++|..+ +++++..+.... +||+.|++.+++.++..++..+++
T Consensus 130 ~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-gw~~~f~i~~~~~~~~~~l~~~~~ 208 (452)
T PRK11273 130 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN-DWHAALYMPAFAAILVALFAFAMM 208 (452)
T ss_pred HHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHc
Confidence 577888888888899999999999999999999999998754 555443443334 599999999888777766777777
Q ss_pred cCCcCccc-----c--Cc-------cccccccHHHHH-HHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCC
Q psy5252 81 EDPERGEA-----E--GR-------VTEERTSFGEDI-RALCKNHRETWIF-----------LNLNWSIVADMTLYVVLP 134 (285)
Q Consensus 81 ~~~~~~~~-----~--~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 134 (285)
||++++.. + ++ +++++.+.++.+ +..++++.+|... ....|.|.+.....+.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~ 288 (452)
T PRK11273 209 RDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 288 (452)
T ss_pred cCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 77654210 0 00 000111222322 2356777765411 122344444333334443
Q ss_pred CCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc--e-ee--ee---eccc-c-cc--ccccccccccccCCc
Q psy5252 135 LRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA--S-TL--VA---NAML-P-SS--LAPSLPFSSSNSTSL 202 (285)
Q Consensus 135 ~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~--~-~~--~~---~~~~-~-~~--~~~~~~~~~~~~~~~ 202 (285)
.+.+.... ...++.+++.++.|+++||+++++.... . .. .. .+.. + .. ......+..+....+
T Consensus 289 ~~~~~~~~-----~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 363 (452)
T PRK11273 289 DKSSWAYF-----LYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYG 363 (452)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence 33332222 2235556678899999999954332111 1 10 01 1111 1 11 111111111122222
Q ss_pred c---hhhhhccccCCcchh-----------hhcc-ccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy5252 203 P---LVSSLDETAHRSDEF-----------LAHK-SDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSL 260 (285)
Q Consensus 203 ~---~~~~~~~~~p~~~r~-----------l~~~-~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (285)
+ ......|.+|++.|. ++.. .+|.+.|.+.|+.||+..|.++.++++++.+......+
T Consensus 364 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 364 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 234567999998871 3333 47999999999999999998888877777666554433
No 12
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.77 E-value=8.8e-19 Score=153.43 Aligned_cols=247 Identities=14% Similarity=0.081 Sum_probs=148.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...+++.|++|+|+|++++++++.+..+|..+++.++..+.+..+ ||+.|++.+++.++..++...++
T Consensus 112 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 190 (406)
T PRK11551 112 LTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-WRHIFYVGGVGPLLLVPLLMRWL 190 (406)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 35788888899999999999999999999999999999999999999998888775 99999998877666666666677
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhh---hHH--------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHR---ETW--------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
||+++...+++.++++++..+......+.+. ++. .+....|.|.+.. ..+.++...+......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~----- 264 (406)
T PRK11551 191 PESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAF----- 264 (406)
T ss_pred CCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHH-----
Confidence 8765432221111111111111110001111 111 1112233343322 2344444444443322
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeee--ee---cc-cccc--ccc-ccccccc-ccCCcchhhhhccccCCcchh-
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AM-LPSS--LAP-SLPFSSS-NSTSLPLVSSLDETAHRSDEF- 218 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~-~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~p~~~r~- 218 (285)
.++.+++.++.|+++||+++++........ .. +. .+.. +.+ ..+.... .+......+...|.+|+++|.
T Consensus 265 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~ 344 (406)
T PRK11551 265 NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGT 344 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhh
Confidence 256677788999999999988765442211 11 11 1111 111 1111111 223334467788999999882
Q ss_pred ----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHH
Q psy5252 219 ----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIF 254 (285)
Q Consensus 219 ----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~ 254 (285)
++..++|.+.|.+.|+.+ +...++....+.+++.++
T Consensus 345 ~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 345 GVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred hhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 566899999999998754 455555544444444443
No 13
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.76 E-value=1.3e-18 Score=152.68 Aligned_cols=241 Identities=13% Similarity=0.155 Sum_probs=145.4
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh------ccCCchHHHHHhhHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS------VMGAWPWSLRVTPVLGACAVL 74 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~------~~g~wr~~f~i~~~~~~~~~~ 74 (285)
++|++++...|...++++||+|+++|++++++++.+.++|.++++++++++.+ ..+ ||+.|++.+++.++..+
T Consensus 105 l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g-wr~~f~~~~~~~l~~~~ 183 (412)
T TIGR02332 105 LVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG-WQWLFLLEGFPSVILGV 183 (412)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc-hhHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999998874 244 99999999988887777
Q ss_pred HHHHhccCCcCccc---c-Ccc--------------ccc----c--ccHHHHHHHHhhhhhhHHH-----------HHHH
Q psy5252 75 LILFFMEDPERGEA---E-GRV--------------TEE----R--TSFGEDIRALCKNHRETWI-----------FLNL 119 (285)
Q Consensus 75 l~~~~~~~~~~~~~---~-~~~--------------~~~----~--~~~~~~~~~~~~~~~~~~~-----------~~~~ 119 (285)
+..+++||+|++.+ + +++ +.+ + ...++.++.++ ++.++.. +...
T Consensus 184 ~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 262 (412)
T TIGR02332 184 MTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAIN 262 (412)
T ss_pred HHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHH
Confidence 77778888764321 0 000 000 0 00112234333 3444331 1123
Q ss_pred HHHHHHHHHH-HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc-ee--eeeec----ccccc-c-c
Q psy5252 120 NWSIVADMTL-YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA-ST--LVANA----MLPSS-L-A 189 (285)
Q Consensus 120 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~-~~--~~~~~----~~~~~-~-~ 189 (285)
.|.|.+.... .+.+..+.+.. .....++..+|.++.|+++||+++|+.... .. ....+ ..... . .
T Consensus 263 ~~~p~~l~~~~~~~s~~~~~~~-----~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (412)
T TIGR02332 263 IWTPQILQSFNQGSSNIMIGLL-----AAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQL 337 (412)
T ss_pred HHHHHHHHhcCCCCcHHHhHHH-----hhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4445443221 11222222222 222335667778899999999987653211 11 00001 11111 1 1
Q ss_pred ccc-cccccccCCcc-hhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHHHHHHH
Q psy5252 190 PSL-PFSSSNSTSLP-LVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIE 248 (285)
Q Consensus 190 ~~~-~~~~~~~~~~~-~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~ 248 (285)
..+ +...+.....+ ......|.+|+++|. ++++++|.+.|.+.|..| |+.++.++.++.
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 338 LGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 111 11111111112 234456788888882 667899999999999875 898887665543
No 14
>PRK09952 shikimate transporter; Provisional
Probab=99.76 E-value=9.5e-19 Score=154.72 Aligned_cols=249 Identities=12% Similarity=-0.002 Sum_probs=145.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHHHhhHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~i~~~~~~~~ 72 (285)
++|++.+..+|...+++.|++|+++|++..+..+.+..+|..++..+...+.. .++ ||+.|++.+++.++.
T Consensus 134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~ 212 (438)
T PRK09952 134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIA 212 (438)
T ss_pred HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999888777653 355 999999888775443
Q ss_pred HHHHHHhccCCcCccccC-ccccccccHHHHHHHHhhhhhhHHH------------HHHHHHHHHHHHHHHhcCCCCcch
Q psy5252 73 VLLILFFMEDPERGEAEG-RVTEERTSFGEDIRALCKNHRETWI------------FLNLNWSIVADMTLYVVLPLRRST 139 (285)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 139 (285)
+......||+++...++ +.++.+.+ .+..+.++++|..+.. +....|.+.+.....+.+...
T Consensus 213 -~~l~~~~~es~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~--- 287 (438)
T PRK09952 213 -LWVRNGMEESAEFEQQQHEQAAAKKR-IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPREL--- 287 (438)
T ss_pred -HHHHHhCCCChhHHHHHhhccccccc-CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH---
Confidence 34444556654321111 10011101 0112224455444331 112223333332223333221
Q ss_pred hHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--e---ec--cc--ccc--c-cccccc-ccc-ccCCcchh
Q psy5252 140 AEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NA--ML--PSS--L-APSLPF-SSS-NSTSLPLV 205 (285)
Q Consensus 140 ~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~--~~--~~~--~-~~~~~~-~~~-~~~~~~~~ 205 (285)
......+.. +...++.++.|+++||++||+......+. + .+ .. ... . ....++ ..+ ....+...
T Consensus 288 -~~~~~~~~g-~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 365 (438)
T PRK09952 288 -FLNIGLLVG-GLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQ 365 (438)
T ss_pred -HHHHHHHHH-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 23345567899999999998765442211 0 01 01 111 1 111111 111 22344567
Q ss_pred hhhccccCCcchh------------hhccccchhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHH
Q psy5252 206 SSLDETAHRSDEF------------LAHKSDEFLAHKSDEFL--ALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 206 ~~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
+.+.|.+|+++|. ++++++|.+.|++.|.. +|+..+.+..++.+++.+..+.
T Consensus 366 ~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 366 PMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 8889999999982 45578999999998854 3777777777777777666543
No 15
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.76 E-value=1.9e-18 Score=154.72 Aligned_cols=249 Identities=9% Similarity=-0.003 Sum_probs=154.0
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-ccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-VMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+|++.+...+...+++.|++|+|||++++++...+..+|.++++.+..++.+ ..| ||..|++.+++.++..+.. ++.
T Consensus 117 ~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G-Wr~~f~i~a~l~ll~~l~~-~~~ 194 (491)
T PRK11010 117 IAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG-WQGMYWLMAALLIPCIIAT-LLA 194 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHHHHHHH-Hhc
Confidence 3556667778888999999999999999999999999999999999999998 455 9999999988776665443 456
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
||++++..+++ +.+++..+.++..++++..+... ....|.+.+.....+.++++.+.... ...
T Consensus 195 ~e~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~----~~g 268 (491)
T PRK11010 195 PEPTDTIPVPK--TLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNK----TLG 268 (491)
T ss_pred CCCcccccccc--chhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH----HHH
Confidence 77653221111 11112234566666666554311 11223333333334444444333322 222
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceee--ee---ec-----cccccc--cccccc-cc-cccCCcchhhhhccccCCc
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTL--VA---NA-----MLPSSL--APSLPF-SS-SNSTSLPLVSSLDETAHRS 215 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~---~~-----~~~~~~--~~~~~~-~~-~~~~~~~~~~~~~~~~p~~ 215 (285)
.++.++|.+++|+++||+++++....... ++ .+ ..++.. ....++ .. .....+...+...+.++++
T Consensus 269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~ 348 (491)
T PRK11010 269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS 348 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35667778899999999998765433111 10 11 011111 111111 00 1112233456667777776
Q ss_pred ch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252 216 DE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 216 ~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
.+ .++..+++.+.|.+.|..||+..|.+.+++.+++.+.....
T Consensus 349 ~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 349 FSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 65 15556778889999999999998888877777776655544
No 16
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.76 E-value=1.2e-18 Score=153.86 Aligned_cols=242 Identities=15% Similarity=0.101 Sum_probs=138.3
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHHHhhHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~i~~~~~~~~ 72 (285)
++|++.|+.+|...++++|++|+++|+++.++.+.+.+.|..+++.+...+.. .++ ||+.|++.++++++.
T Consensus 133 l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 133 FQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG-WRIPFALGAVLAVVA 211 (432)
T ss_pred HHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999888887665542 455 999999888777654
Q ss_pred HHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH------------HHHHHHHHHHHHHHhcCCCCcchh
Q psy5252 73 VLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF------------LNLNWSIVADMTLYVVLPLRRSTA 140 (285)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 140 (285)
. +.+..+||+++.+.++. ++ ..+++.+++++..+... ....|.|.+.....+.+..+.+..
T Consensus 212 ~-~~~~~~~e~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~ 284 (432)
T PRK10406 212 L-WLRRQLDETSQQETRAL--KE----AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGI 284 (432)
T ss_pred H-HHHhcCCCCchHHHhhh--cc----cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3 44445566543221111 11 12344556666554311 122334443332333333222222
Q ss_pred HHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee---ee--cc--cc---cc-ccccccc-c-cc-ccCCcchhh
Q psy5252 141 EAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV---AN--AM--LP---SS-LAPSLPF-S-SS-NSTSLPLVS 206 (285)
Q Consensus 141 ~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~---~~--~~--~~---~~-~~~~~~~-~-~~-~~~~~~~~~ 206 (285)
.. +.. +...++.++.|+++||++||+........ .. +. .. .. ..+.+.. . .. ....++...
T Consensus 285 ~~----i~~-~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (432)
T PRK10406 285 MT----AAL-FVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGI 359 (432)
T ss_pred HH----HHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 122 23344566889999999998755432110 10 11 11 11 1111111 1 11 122234567
Q ss_pred hhccccCCcchh--------hh----ccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHH
Q psy5252 207 SLDETAHRSDEF--------LA----HKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 207 ~~~~~~p~~~r~--------l~----~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 256 (285)
.++|.+|++.|. ++ +...|.+.+.+ +..| +...+++.++..+++.+..+
T Consensus 360 ~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 360 LKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 788999999992 22 23566667754 4445 55556655555555555444
No 17
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.75 E-value=3.4e-19 Score=159.73 Aligned_cols=251 Identities=16% Similarity=0.068 Sum_probs=143.1
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHHHhhHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~i~~~~~~~~ 72 (285)
++|++.|..++...++++||+|+|+|+++.++.+.+..+|..+++.+...+.. .++ ||+.|++.+++.++
T Consensus 127 l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~- 204 (490)
T PRK10642 127 AQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWG-WRIPFFIALPLGII- 204 (490)
T ss_pred HHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCcc-HHHHHHHHHHHHHH-
Confidence 47999999999999999999999999999999999999998888877655432 455 99999987766554
Q ss_pred HHHHHHhccCCcCccccCc---c-ccc--cccHHHHHHHHhhh-hh-hHH-----------HHHHHHHHHHHHHHHHhcC
Q psy5252 73 VLLILFFMEDPERGEAEGR---V-TEE--RTSFGEDIRALCKN-HR-ETW-----------IFLNLNWSIVADMTLYVVL 133 (285)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~---~-~~~--~~~~~~~~~~~~~~-~~-~~~-----------~~~~~~~~~~~~~~~~~~~ 133 (285)
.++++..+||+++...+.+ + +++ ++....+++.++++ +. +.. .+....|.|.+....++.+
T Consensus 205 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s 284 (490)
T PRK10642 205 GLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYS 284 (490)
T ss_pred HHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455567787654211100 0 000 00001122223321 11 111 1112234444332223333
Q ss_pred CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee--e-ee---cc--ccc-c--cccccccc-c-cccC
Q psy5252 134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL--V-AN---AM--LPS-S--LAPSLPFS-S-SNST 200 (285)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~-~~---~~--~~~-~--~~~~~~~~-~-~~~~ 200 (285)
... +........++..++.++.|+++||++||+......+ . .. +. ... . +..+.++. . ....
T Consensus 285 ~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 359 (490)
T PRK10642 285 EDH-----GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCF 359 (490)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 221 2222333446667778899999999999976544221 1 00 10 111 1 11111111 1 1123
Q ss_pred CcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHH
Q psy5252 201 SLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 201 ~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
.+.....+.|.+|++.|. +++.++|.+.|++.+..+ +...+++..+..+++.+..++.
T Consensus 360 ~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 360 TGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 344566778999999992 234678999999888654 5555554455555555544443
No 18
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.75 E-value=9e-18 Score=148.59 Aligned_cols=250 Identities=12% Similarity=0.085 Sum_probs=150.2
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-ccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-VMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
.|++.+..++.....+.|++|+++|++++++++.+.++|..+++++.+.... .. +||+.|++.+++.++..++..+++
T Consensus 128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~w~~~f~~~~~~~~i~~~~~~~~~ 206 (438)
T TIGR00712 128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN-DWHAALYFPAICAIIVALFAFAMM 206 (438)
T ss_pred HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677788888889999999999999999999999999999999988776544 45 499999999988887776667777
Q ss_pred cCCcCccc----c---Ccc-----c--cccccHHHH-HHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCC
Q psy5252 81 EDPERGEA----E---GRV-----T--EERTSFGED-IRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLP 134 (285)
Q Consensus 81 ~~~~~~~~----~---~~~-----~--~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 134 (285)
||++++.. + .+. + +++.+.++. .+..++++.++... ....|.|.+.....+.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~ 286 (438)
T TIGR00712 207 RDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFAL 286 (438)
T ss_pred cCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCh
Confidence 77543210 0 000 0 001111222 12356777665521 122344444333334444
Q ss_pred CCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee--e----e--eecccc---cc-ccccccccccccCCc
Q psy5252 135 LRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST--L----V--ANAMLP---SS-LAPSLPFSSSNSTSL 202 (285)
Q Consensus 135 ~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~--~----~--~~~~~~---~~-~~~~~~~~~~~~~~~ 202 (285)
.+.+..... ..++.+++.++.|+++||+++++...... . . ..+... .. ......+..+.+..+
T Consensus 287 ~~~~~~~~~-----~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 361 (438)
T TIGR00712 287 DKSSWAYFL-----YEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYG 361 (438)
T ss_pred hhHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHcc
Confidence 443333332 22455667889999999996553222211 0 0 001111 11 111111111112223
Q ss_pred ch---hhhhccccCCcchh-----------hh-ccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 203 PL---VSSLDETAHRSDEF-----------LA-HKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 203 ~~---~~~~~~~~p~~~r~-----------l~-~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
+. .....|.+|++.|. ++ ..++|.+.|.+.|+.||+.+++....+.+++.+..+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 362 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred HHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 32 23467899988871 33 3579999999999999999988776666666555443
No 19
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.75 E-value=2.1e-18 Score=151.70 Aligned_cols=245 Identities=14% Similarity=0.015 Sum_probs=149.6
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...++..+++.|++|+++|++++++.+.+.++|..+|+.+++.+.+..+ ||+.|++.++..++..++ ...+|
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~ 197 (417)
T PRK10489 120 DGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLAAAGTFITLLP-LLRLP 197 (417)
T ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH-HHhCC
Confidence 4666677778889999999999999999999999999999999999999998776 999999887776655543 44556
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhc
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAF 151 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (285)
++++++.++ +++.++.++.++..+++|.++.... ...|.|.+.....+.++...+...+ ...+
T Consensus 198 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~-----~~~~ 270 (417)
T PRK10489 198 ALPPPPQPR--EHPLRSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALADEVWQMGAAQIGLLYA-----AVPL 270 (417)
T ss_pred CCCCCCccc--ccchHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHHHhccCCChhHhHHHHH-----HHHH
Confidence 543322111 1112234455666777777544211 1112233222223444433333333 2236
Q ss_pred cccchhhhhHHHhHHhhhhhccccee--eee---eccc-ccc-c-ccc-ccccccccCCcc-hhhhhccccCCcchh---
Q psy5252 152 GDAGSPYLIGLLSEMFRHSLQLGAST--LVA---NAML-PSS-L-APS-LPFSSSNSTSLP-LVSSLDETAHRSDEF--- 218 (285)
Q Consensus 152 g~~~g~~~~G~l~d~~~~~~~~~~~~--~~~---~~~~-~~~-~-~~~-~~~~~~~~~~~~-~~~~~~~~~p~~~r~--- 218 (285)
+.+++.++.+++.||.++++...... ..+ .+.. +.. . ... .++..+.+...+ ..+.+.|..|++.|.
T Consensus 271 g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 350 (417)
T PRK10489 271 GAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRIN 350 (417)
T ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 66777788899998855543332211 111 1111 111 1 111 111112222222 356788999998871
Q ss_pred --------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5252 219 --------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFF 255 (285)
Q Consensus 219 --------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (285)
++..+||.+.|.+.|..|++.++...+++.++.+++.
T Consensus 351 g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 395 (417)
T PRK10489 351 GLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL 395 (417)
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 5678999999999999998887876665554444443
No 20
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.74 E-value=2.7e-18 Score=151.26 Aligned_cols=238 Identities=16% Similarity=0.075 Sum_probs=139.8
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+..++....++.|++|+|+|+++++++..+..+|.++++.+.+.+.+.++ ||+.|++..+..++ .+......
T Consensus 115 l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w~~~f~i~~~~~~~-~~~~~~~~ 192 (426)
T PRK12307 115 IVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAFFVGLLPVLL-VIYIRARA 192 (426)
T ss_pred HHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-HHHHHHHHHHHHHH-HHHHHHHC
Confidence 36888899999999999999999999999999999999999999999999988886 99999875443322 22222233
Q ss_pred cCCcCccccC--ccc-ccc---ccHHHHHHHHhhhhhhHHHH-----H---------HHHHHHHHHHHHHhcCCCCcchh
Q psy5252 81 EDPERGEAEG--RVT-EER---TSFGEDIRALCKNHRETWIF-----L---------NLNWSIVADMTLYVVLPLRRSTA 140 (285)
Q Consensus 81 ~~~~~~~~~~--~~~-~~~---~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~ 140 (285)
||+++...++ +++ +++ ......++..++++.++... . ...|.+.+.. ..+.++...+..
T Consensus 193 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 271 (426)
T PRK12307 193 PESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLA-GEGFDTGVVSNL 271 (426)
T ss_pred CCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHH
Confidence 4432211110 000 000 11123456677777654311 0 1112222211 122222222222
Q ss_pred HHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eec-cccc-c-ccc-ccccc---ccccCCcchhhhh
Q psy5252 141 EAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANA-MLPS-S-LAP-SLPFS---SSNSTSLPLVSSL 208 (285)
Q Consensus 141 ~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~-~~~~-~-~~~-~~~~~---~~~~~~~~~~~~~ 208 (285)
.....++.+++.++.|+++||+++|+......+. ... ..+. . ... ...+. ...+..+.....+
T Consensus 272 -----~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
T PRK12307 272 -----MTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFL 346 (426)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 2223355677788999999999988755432211 000 1111 1 111 11111 1122233345677
Q ss_pred ccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHH
Q psy5252 209 DETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSF 246 (285)
Q Consensus 209 ~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~ 246 (285)
.|.+|++.|. +++.++|.+.|++.|+.|+....+...+
T Consensus 347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~ 395 (426)
T PRK12307 347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA 395 (426)
T ss_pred HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8999998872 5668999999999999987765544333
No 21
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.74 E-value=4e-18 Score=152.17 Aligned_cols=250 Identities=12% Similarity=0.014 Sum_probs=140.5
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh---------ccCCchHHHHHhhHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS---------VMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~---------~~g~wr~~f~i~~~~~~~~ 72 (285)
+|++.+.. +....++++++|+++|++++|+.+...++|..+++.+.+.+.. ..+ ||+.|++.+++.++.
T Consensus 134 ~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g-Wr~~f~i~g~l~l~~ 211 (476)
T PLN00028 134 IGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA-WRIAFFVPGLLHIIM 211 (476)
T ss_pred HHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh-hHHHHHHHHHHHHHH
Confidence 46666654 3456789999999999999999998888888877776655532 134 999999999988877
Q ss_pred HHHHHHhccCCcCccccC---ccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcc
Q psy5252 73 VLLILFFMEDPERGEAEG---RVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRS 138 (285)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 138 (285)
.++..++.+++|+.+.++ +.+.++.+..+.++..++++.+|.... ..+|.+.+....++.++...+
T Consensus 212 ~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~ 291 (476)
T PLN00028 212 GILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAG 291 (476)
T ss_pred HHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHH
Confidence 766666555544321111 001111223344566677777554211 122344443333344443333
Q ss_pred hhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccc--c----ee-ee-----eeccccc-c-c-c-ccccccc-cccCC
Q psy5252 139 TAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLG--A----ST-LV-----ANAMLPS-S-L-A-PSLPFSS-SNSTS 201 (285)
Q Consensus 139 ~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~--~----~~-~~-----~~~~~~~-~-~-~-~~~~~~~-~~~~~ 201 (285)
...... .++..++.++.|+++||+++|+..+ . .. .. ..+.... . . . ...++.. .....
T Consensus 292 ~~~~~~-----~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 366 (476)
T PLN00028 292 AIAASF-----GLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAAC 366 (476)
T ss_pred HHHHHH-----HHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 332222 2555667889999999999874221 1 01 00 0011111 1 1 1 1111111 11222
Q ss_pred cchhhhhccccCCcchh-------hhccccchhhhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252 202 LPLVSSLDETAHRSDEF-------LAHKSDEFLAHKSDE---FLALQYALFITSFIEVLGGIFFLLGS 259 (285)
Q Consensus 202 ~~~~~~~~~~~p~~~r~-------l~~~~~p~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
+...+...+..| +.+. .++.+++.+.+.+.+ ..+|+.+|++.+++.++++++.++.+
T Consensus 367 ~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 367 GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 334444556554 4441 333566777776655 33588999988888888887776654
No 22
>PRK15075 citrate-proton symporter; Provisional
Probab=99.73 E-value=7.7e-18 Score=148.85 Aligned_cols=227 Identities=14% Similarity=0.057 Sum_probs=127.4
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh--------hccCCchHHHHHhhHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF--------SVMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~--------~~~g~wr~~f~i~~~~~~~~ 72 (285)
++|++.+...+...++++|++|+|+|++++++...+.++|..+++.+++.+. +.++ ||++|++..+.. +.
T Consensus 126 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~-~~ 203 (434)
T PRK15075 126 LQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIV-PF 203 (434)
T ss_pred HhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc-hHHHHHHHHHHH-HH
Confidence 4688999999999999999999999999999999998888888888887763 3465 999998754332 22
Q ss_pred HHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHH------------HHHHHHHHHHHHHHHHhcCCCCcchh
Q psy5252 73 VLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETW------------IFLNLNWSIVADMTLYVVLPLRRSTA 140 (285)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (285)
........||+++...++ ++.+.++.++...+++..+. ......|.|.+.....+.+..+.+..
T Consensus 204 ~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~ 279 (434)
T PRK15075 204 IFLIRRSLEETEEFLARK----HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLV 279 (434)
T ss_pred HHHHHHhcCCCHHHHHhh----hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 222222233322100000 11111222333333333221 11122334443333334443332222
Q ss_pred HHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee---eeec----cc-c-ccc---ccc-ccccccc-cCCcchhh
Q psy5252 141 EAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL---VANA----ML-P-SSL---APS-LPFSSSN-STSLPLVS 206 (285)
Q Consensus 141 ~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~---~~~~----~~-~-~~~---~~~-~~~~~~~-~~~~~~~~ 206 (285)
.....++.+++.++.|+++||++||+....... .... .. . ... ... ....... ...+....
T Consensus 280 -----~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (434)
T PRK15075 280 -----TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVV 354 (434)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 222235556678899999999999876543211 1000 00 1 111 111 1111112 22233456
Q ss_pred hhccccCCcchh------------hhccccchhhhhhhhhhhhH
Q psy5252 207 SLDETAHRSDEF------------LAHKSDEFLAHKSDEFLALQ 238 (285)
Q Consensus 207 ~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~~~~ 238 (285)
...|.+|+++|. +++.++|.+.|.+.|+.|++
T Consensus 355 ~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 355 ALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 788999999982 23456999999999988853
No 23
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.73 E-value=8.7e-18 Score=145.06 Aligned_cols=241 Identities=11% Similarity=0.041 Sum_probs=149.0
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+..++.....+.+++| |+|+++++++..+.++|..+++++.+.+.+..+ ||+.|++.+++.++..+...++++
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 101 ASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLVIVLGAFLIG 178 (377)
T ss_pred HhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHhee
Confidence 577888888888899999996 689999999999999999888888888777775 999999999988887777777777
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH---H--------HHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN---L--------NWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
++++++.+++++. .+.....+..++++.++..... . .+.+.+ ....+.+... .+ .......
T Consensus 179 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~-~~~~~~~ 250 (377)
T TIGR00890 179 YPPGQLIKTNIEV--SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPY-GQSLGLSDGF----LV-LAVSISS 250 (377)
T ss_pred cCchhccccCccc--chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHH-HHHcCCCHHH----HH-HHHHHHH
Confidence 6554322111111 1112234556677766542110 0 011111 1111222111 12 1222223
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceeee--ee---cc-ccc-c---c-cccccccc-cccCCcchhhhhccccCCcchh
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AM-LPS-S---L-APSLPFSS-SNSTSLPLVSSLDETAHRSDEF 218 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~-~~~-~---~-~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~ 218 (285)
++.+++.++.|+++||++||+........ +. .. .+. . . ........ ...........+.|.+|+++|.
T Consensus 251 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 330 (377)
T TIGR00890 251 IFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA 330 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhh
Confidence 55667788999999999998755432211 00 00 111 1 1 11111111 1222334456788999999871
Q ss_pred -----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252 219 -----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG 252 (285)
Q Consensus 219 -----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~ 252 (285)
++..++|.+.|.+.|+.||+..+.+.+++.+++.
T Consensus 331 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 331 ANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 6678999999999999999999887776655543
No 24
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.72 E-value=1.6e-17 Score=147.57 Aligned_cols=248 Identities=14% Similarity=0.052 Sum_probs=144.9
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+...+++.++++ ++|++++++.+.+..+|..+++++++.+.+.++ ||+.|++.+++.++..+...+..+
T Consensus 118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 577888777788889999995 789999999999999999999999999999886 999999999887766555444433
Q ss_pred CCcCcc---cc--C----cccccc-------ccHHHHH-HHHhhhhhhHHHHHH-----------HHHHHHHHHHHHhcC
Q psy5252 82 DPERGE---AE--G----RVTEER-------TSFGEDI-RALCKNHRETWIFLN-----------LNWSIVADMTLYVVL 133 (285)
Q Consensus 82 ~~~~~~---~~--~----~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 133 (285)
+++.++ .+ + +...++ ++..+.. ...+++|.++..... ..+.+.+. ...+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~g~s 274 (455)
T TIGR00892 196 VGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYA-KDKGVD 274 (455)
T ss_pred CCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHH-HHcCCC
Confidence 322110 00 0 000000 0001100 135677776652211 11222222 122333
Q ss_pred CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhh--hhhccccee--ee--eec---cccc-c--c-ccccccccccc-
Q psy5252 134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFR--HSLQLGAST--LV--ANA---MLPS-S--L-APSLPFSSSNS- 199 (285)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~--~~~~~~~~~--~~--~~~---~~~~-~--~-~~~~~~~~~~~- 199 (285)
+.+.+...+. ..++.+++.++.|+++||.. +++...... +. ..+ .... . + ...++...+.+
T Consensus 275 ~~~~g~~~~~-----~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~ 349 (455)
T TIGR00892 275 EYEAAFLLSI-----IGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGS 349 (455)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhch
Confidence 3333333222 23555666778999999732 222111111 11 111 1111 1 1 11222222222
Q ss_pred CCcchhhhhccccCCcch-----------hhhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHH
Q psy5252 200 TSLPLVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 200 ~~~~~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 257 (285)
......+.+.|.+|++++ .+++.++|.+.|.+.|..+ |+..|+..+++.+++.+....
T Consensus 350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~ 419 (455)
T TIGR00892 350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAI 419 (455)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHH
Confidence 233456778899998876 2677999999999999874 999998888777776654443
No 25
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.72 E-value=2.6e-17 Score=143.59 Aligned_cols=237 Identities=11% Similarity=0.092 Sum_probs=143.3
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...|...+++.|++|+|+|++++++...+.++|..++|++++.+.+.++ ||+.|++.+++.++..+......
T Consensus 117 l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~l~~~~~l~~~~~~ 195 (394)
T PRK10213 117 CLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAAAVMGVLCIFWIIKSL 195 (394)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 36888889999999999999999999999999999999999999999999999886 99999998877766554444445
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
||+++++. + ..+..+..+++|.++.... ...+.+.....+++.+++..+.... ..
T Consensus 196 p~~~~~~~-----~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~-----~~ 261 (394)
T PRK10213 196 PSLPGEPS-----H----QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLL-----SF 261 (394)
T ss_pred CCCCcccc-----c----chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHH-----HH
Confidence 55432110 0 1122345667776654211 1111111112233444433333222 22
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceee--eeec---cccc-c--c-cccccccccccCCcc-hhhhhccccCCcch--
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTL--VANA---MLPS-S--L-APSLPFSSSNSTSLP-LVSSLDETAHRSDE-- 217 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~~~---~~~~-~--~-~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r-- 217 (285)
.++.+++.++.|++.||.+++.......+ ...+ ...+ . + ....+...+.+...+ ..+.+++..|++..
T Consensus 262 ~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (394)
T PRK10213 262 GIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKA 341 (394)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHH
Confidence 35666677788888888543321111110 0101 1111 1 1 111222222233333 34567777775432
Q ss_pred --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252 218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG 252 (285)
Q Consensus 218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~ 252 (285)
.++..+||.+.|.+.|..|++..+...+.+.++..
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 26778999999999999998888877665544443
No 26
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.71 E-value=2.2e-17 Score=148.39 Aligned_cols=244 Identities=16% Similarity=0.060 Sum_probs=139.6
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+...+++.|++|+|+|+++++++..+.++|..+++.+.+.+.+.++ ||+.|++..+.. +..++.....|
T Consensus 118 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~f~~~~~~~-~~~~~~~~~~p 195 (496)
T PRK03893 118 IGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-WRALFFIGILPI-IFALWLRKNLP 195 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHH-HHHHHHHHhCC
Confidence 5778888889999999999999999999999999999999999999999999886 999998754433 33333344455
Q ss_pred CCcCccccCccccccccHHHH--------HH------------HHhhh----------------------------hhhH
Q psy5252 82 DPERGEAEGRVTEERTSFGED--------IR------------ALCKN----------------------------HRET 113 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--------~~------------~~~~~----------------------------~~~~ 113 (285)
|+++...+++...+..+..+. .. ..... +...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (496)
T PRK03893 196 EAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWP 275 (496)
T ss_pred CchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 543211111000000000000 00 00000 0000
Q ss_pred H--H-----H--H-----HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee
Q psy5252 114 W--I-----F--L-----NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV 179 (285)
Q Consensus 114 ~--~-----~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~ 179 (285)
. . . . ...+.|.+.....+.++.+.+... ....++.+++.++.|+++||+++++........
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~-----~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~ 350 (496)
T PRK03893 276 TGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVL-----FFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLI 350 (496)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 0 0 0 0 011223332223333333333332 233466677888999999999988765432211
Q ss_pred --e----ecccc-cc-c-c-ccccc--cccccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh
Q psy5252 180 --A----NAMLP-SS-L-A-PSLPF--SSSNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA 236 (285)
Q Consensus 180 --~----~~~~~-~~-~-~-~~~~~--~~~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~ 236 (285)
+ ..... .. . . ...+. ..+.+......+.++|.+|++.|. ++..++|.+.|.+.|+.|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g 430 (496)
T PRK03893 351 SQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD 430 (496)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence 0 00111 11 1 1 11111 112334445567788999998871 566799999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q psy5252 237 LQYALFITSFIEVLGG 252 (285)
Q Consensus 237 ~~~~~~~~~~~~~~~~ 252 (285)
++..+...+..+.+..
T Consensus 431 ~~~~~~~~~~~~~~~~ 446 (496)
T PRK03893 431 LGTALASLSFSLTFVV 446 (496)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9887765554443333
No 27
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.71 E-value=3.8e-17 Score=143.04 Aligned_cols=247 Identities=12% Similarity=0.008 Sum_probs=148.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHH-HHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGS-GLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~-~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+|++.+...+...+.+.+++|+|||++++|+++++.++|. .+++.+++++.+.++ |+..++.......+..++..++.
T Consensus 115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHHHHhcc
Confidence 5777777778888889999999999999999999999997 589999999988775 77766655444444444444445
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
+++++++.+++ +++..+..+.++.++++|.++... ....|.|.+. ..++.++.+.+...+. .
T Consensus 194 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~-----~ 266 (402)
T TIGR00897 194 KDIFTPQHMQT-REKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFV-AELGFSTSEWLQIWGT-----F 266 (402)
T ss_pred CCCCCcccccC-CcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHH-----H
Confidence 54322211111 111122344566778888776421 1223444332 3344444433332222 2
Q ss_pred hccccchhhhhHHHhHHhhhhhcccce-e--ee---eecc-----cccc---c-cccccccccccCCcchhhhhccccCC
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGAS-T--LV---ANAM-----LPSS---L-APSLPFSSSNSTSLPLVSSLDETAHR 214 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~-~--~~---~~~~-----~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 214 (285)
.++..++.+..|+++||+++|+..... . .. ..+. .... + ........+.+...+....+.|..|
T Consensus 267 ~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~- 345 (402)
T TIGR00897 267 FFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP- 345 (402)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-
Confidence 255667788999999999988754321 1 00 0111 0111 1 1111111112223344555667655
Q ss_pred cch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 215 SDE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 215 ~~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
++| .+++.++|.+.|.+.|..|+...+++.+++.+++.++..+
T Consensus 346 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 346 KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 455 1566899999999999999999888887777666655443
No 28
>PRK03699 putative transporter; Provisional
Probab=99.70 E-value=8.8e-17 Score=140.34 Aligned_cols=244 Identities=10% Similarity=0.095 Sum_probs=148.2
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-ccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-VMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+|++.+...+...+++.|++|+++|++++++.+....+|..++|.+.+.+.. ..+ ||+.|.+.+++.++..++.. ..
T Consensus 105 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w~~~f~~~~~~~~~~~~~~~-~~ 182 (394)
T PRK03699 105 LGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-WYWVYACIGLVYVAIFILTL-FS 182 (394)
T ss_pred HHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHH-hc
Confidence 5778888888999999999999999999999999999999999999888765 454 99999988887766554433 22
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
+.|+.++.++++ ++... +..+ ++.++. ......|.|.+....++.++.+.+...+...
T Consensus 183 ~~p~~~~~~~~~--~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~---- 251 (394)
T PRK03699 183 EFPALGKHAPKA--DKPVA----KEKW-GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFW---- 251 (394)
T ss_pred CCccccccCccc--cCccc----cccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHH----
Confidence 222111111111 01000 0011 122211 1234467777765566777666665555333
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeee-----eecccc-cc--c-ccccccccc-ccCCcchhhhhccccCCcch--
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLP-SS--L-APSLPFSSS-NSTSLPLVSSLDETAHRSDE-- 217 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~-~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r-- 217 (285)
++..+|.++.|+++||+++|+........ ..+... .. + .....+... .+..+...+...|..|.+..
T Consensus 252 -~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (394)
T PRK03699 252 -MAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKL 330 (394)
T ss_pred -HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH
Confidence 45566788999999999998755442211 011111 11 1 111111111 11222223344555554321
Q ss_pred --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252 218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGS 259 (285)
Q Consensus 218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
.+|..++|.+.|++.|..|++.+++..+++.+++.+.++...
T Consensus 331 ~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 331 VNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 256789999999999999999999887777777766555443
No 29
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.70 E-value=6.7e-17 Score=136.06 Aligned_cols=240 Identities=13% Similarity=0.017 Sum_probs=165.9
Q ss_pred ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCC--chHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252 7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA--WPWSLRVTPVLGACAVLLILFFMEDPE 84 (285)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~--wr~~f~i~~~~~~~~~~l~~~~~~~~~ 84 (285)
|..+++.++.++.|||||++|.++|++. ..|+|..+...++..++...+. ||....+..+..++..++..+..+|.+
T Consensus 119 GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 119 GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 3445788899999999999999999999 8899999999999999988743 999998888888887878888887765
Q ss_pred CccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccc
Q psy5252 85 RGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGD 153 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 153 (285)
+.+.+.++.. ...++...+++..|+ ...+..|.+.+...+|+.++...+....... .++.
T Consensus 198 ~~r~~~~~~~-----~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~----~~g~ 268 (417)
T COG2223 198 EHRASVKPQL-----PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFP----LIGA 268 (417)
T ss_pred hhhccccccc-----hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH----HHHH
Confidence 5322221111 045666777777766 1235567788888888888877765544433 3444
Q ss_pred cchhhhhHHHhHHhhhhhccccee-------eeeeccc-----ccc--ccc---cccccccccCCcchhhhhccccCCcc
Q psy5252 154 AGSPYLIGLLSEMFRHSLQLGAST-------LVANAML-----PSS--LAP---SLPFSSSNSTSLPLVSSLDETAHRSD 216 (285)
Q Consensus 154 ~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~~-----~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~ 216 (285)
+.++++|+++||+|.++.....+ .++.+.. ... ... ..++.....-++.++.++...+|++.
T Consensus 269 -l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~ 347 (417)
T COG2223 269 -LARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKET 347 (417)
T ss_pred -HHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhh
Confidence 45899999999999987665422 1111111 011 111 11111224556667777888887766
Q ss_pred hh----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHH
Q psy5252 217 EF----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 217 r~----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 257 (285)
.. +|...-|...|...|..| ++.+|+....+.+++.+....
T Consensus 348 G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 348 GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 51 555677889999999888 888888877777766665443
No 30
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.69 E-value=4.9e-17 Score=142.34 Aligned_cols=245 Identities=9% Similarity=-0.056 Sum_probs=147.9
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
+...+...++..+++.|++|+|||+++.++...+.++|..+++.++..+.+...+||..|++.++..++..+ ..+..||
T Consensus 105 ~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e 183 (402)
T PRK11902 105 AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPE 183 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCC
Confidence 344556678889999999999999999999999999999999999999988542499999998887766543 3456677
Q ss_pred CcCccccCccccccccHHHHHHHHhhhhhhHHHHHHH-----------HHHHHHHHHHHhcCCCCcchhHHHHHHHhhhc
Q psy5252 83 PERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNL-----------NWSIVADMTLYVVLPLRRSTAEAFQILISHAF 151 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (285)
+++++.+++ +.+++..+.++.++|+|.++...... .+.+.+.....+.+++..+...+ ....+
T Consensus 184 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~----~~~~~ 257 (402)
T PRK11902 184 PEVPARPPR--SLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNK----TLGLA 257 (402)
T ss_pred Ccccccccc--hhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHh----HHHHH
Confidence 654322111 11123456677888888775421110 12122222222333332222221 22234
Q ss_pred cccchhhhhHHHhHHhhhhhcccceee--e---eec-----ccccc--ccccc----ccc-c-cccCCcchhhhhccccC
Q psy5252 152 GDAGSPYLIGLLSEMFRHSLQLGASTL--V---ANA-----MLPSS--LAPSL----PFS-S-SNSTSLPLVSSLDETAH 213 (285)
Q Consensus 152 g~~~g~~~~G~l~d~~~~~~~~~~~~~--~---~~~-----~~~~~--~~~~~----~~~-~-~~~~~~~~~~~~~~~~p 213 (285)
+.+++.+++|++.||+++++....... . +.+ ...+. +.... ++. . ...........+.+..|
T Consensus 258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 337 (402)
T PRK11902 258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS 337 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 456677899999999998875543211 0 111 11111 11111 111 0 01122223455667777
Q ss_pred Ccchh-------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5252 214 RSDEF-------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIF 254 (285)
Q Consensus 214 ~~~r~-------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (285)
.+++. ++...++.++|.+.|+.||+..|...+++.+++.++
T Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 338 ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 66652 444555668999999999998888777766666444
No 31
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.69 E-value=7.2e-17 Score=140.82 Aligned_cols=241 Identities=12% Similarity=0.077 Sum_probs=142.8
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...+++.+++| |||+++++++..+.++|..+++.+++++.++..+||+.+.+.++..++..+......
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999996 789999999999999999999999999998763599998777666554443332222
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
++.++++.++ +.+ .+..++++..+. ......|.+.+.. +++.++...+......
T Consensus 185 ~~~~~~~~~~-----~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~-~~g~s~~~ag~~~~~~----- 249 (393)
T PRK09705 185 AREVASSHKT-----TTT----PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYI-EIGASAQYSGSLLALM----- 249 (393)
T ss_pred cCCCccccCC-----CcC----CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhhhhHHHHHH-----
Confidence 2222111110 000 011233343322 1123345555543 3455555555444433
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceee--eeec----ccccc--ccccccccccccCCcc-hhhhhccccC-Ccch--
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTL--VANA----MLPSS--LAPSLPFSSSNSTSLP-LVSSLDETAH-RSDE-- 217 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~~~----~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~p-~~~r-- 217 (285)
.++.++|.++.|++.||+++++....... .++. ..+.. .........+.+...| ......+..+ ++++
T Consensus 250 ~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~ 329 (393)
T PRK09705 250 TLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGK 329 (393)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHH
Confidence 36677788899999999998865443211 1111 11211 1111111111222222 3344456654 4554
Q ss_pred ---------hhhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHH
Q psy5252 218 ---------FLAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 218 ---------~l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 257 (285)
.++..++|.+.|++.|+.| ++..+....+++++..++...
T Consensus 330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 1445789999999999887 777777766666655544433
No 32
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.69 E-value=3.2e-17 Score=143.00 Aligned_cols=231 Identities=15% Similarity=0.049 Sum_probs=136.9
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+...+++.|++|+++|++++++.+...++|..++|.+++.+.+..+ ||+.|++.+++.++..++.....|
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~ 179 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTMAAMGILVLLLSLFILK 179 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5778888888999999999999999999999999999999999999999888775 999999998887777766666777
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
|+++++.++ +.+..+..+..++++.++.... ...+.+.+.....+.++.+.+.... ...
T Consensus 180 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~ 249 (392)
T PRK10473 180 ETRPARAPA-----ASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMA-----LTA 249 (392)
T ss_pred CCCCcccCC-----ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHH-----HHH
Confidence 754322111 1112233445566666543111 1111122222223333333222222 223
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceeee--ee---cccc--cc-ccccccccccccCCcchhhhhccccCCcch-----
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLP--SS-LAPSLPFSSSNSTSLPLVSSLDETAHRSDE----- 217 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r----- 217 (285)
++.+++.++.+++.||+++|+........ ++ .... .. ......+...+...+.......+..|.++|
T Consensus 250 ~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 329 (392)
T PRK10473 250 GVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVAS 329 (392)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCcccccHHH
Confidence 45566678999999999998755442211 00 0111 11 111111110011111112333455555555
Q ss_pred ---hhhccccchhhhhhhhhhhhHHHHHH
Q psy5252 218 ---FLAHKSDEFLAHKSDEFLALQYALFI 243 (285)
Q Consensus 218 ---~l~~~~~p~~~G~~~~~~~~~~~~~~ 243 (285)
.++..+++.+.|.+.+..|+......
T Consensus 330 ~~~~~~~~~g~~~~~~l~~~~g~~~~~~~ 358 (392)
T PRK10473 330 STLGIAQVCGSSLWIWLAAVLGISAWNML 358 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 25567889999999998887644433
No 33
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.69 E-value=2.3e-17 Score=141.94 Aligned_cols=227 Identities=17% Similarity=0.145 Sum_probs=139.2
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+...++++|++|+|+|++++++.+.+.++|..+++.+++.+.+..+ ||+.|++.++..++..++. ...+
T Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~ 179 (365)
T TIGR00900 102 LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWAIWVDAVGFAISALLI-VSVR 179 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 5788888999999999999999999999999999999999999999999999886 9999998877665554333 3333
Q ss_pred CCcCccccCc--cccccccHHHHHHHHhhhhhhHHHHH-----------HH-HHHHHHHHHHHhcCCCCcchhHHHHHHH
Q psy5252 82 DPERGEAEGR--VTEERTSFGEDIRALCKNHRETWIFL-----------NL-NWSIVADMTLYVVLPLRRSTAEAFQILI 147 (285)
Q Consensus 82 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (285)
++++++.+++ +++..++..+.++..+++|.++.... .. .+.|.+....++.++.+.+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 254 (365)
T TIGR00900 180 IPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLA----- 254 (365)
T ss_pred cccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHH-----
Confidence 2222111111 11112234455677778877654211 11 22333322223444333333222
Q ss_pred hhhccccchhhhhHHHhHHhhhhhcccceeee-------eecccccc--c-cccccccccc-cCCcchhhhhccccCCcc
Q psy5252 148 SHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAMLPSS--L-APSLPFSSSN-STSLPLVSSLDETAHRSD 216 (285)
Q Consensus 148 ~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~~~~--~-~~~~~~~~~~-~~~~~~~~~~~~~~p~~~ 216 (285)
...++.+++.++.+++.||.++++........ ..+...+. . ....+...+. .......+.+.|.+|+++
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (365)
T TIGR00900 255 AFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL 334 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22355666778899999999988655432111 11111112 1 1111222222 233445678889999988
Q ss_pred hh-----------hhccccchhhhhhhhhh
Q psy5252 217 EF-----------LAHKSDEFLAHKSDEFL 235 (285)
Q Consensus 217 r~-----------l~~~~~p~~~G~~~~~~ 235 (285)
|. ++..++|.+.|.+.|+.
T Consensus 335 ~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 335 LGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 72 45577888888887754
No 34
>KOG2533|consensus
Probab=99.68 E-value=6.2e-17 Score=142.83 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=116.3
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh------ccCCchHHHHHhhHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS------VMGAWPWSLRVTPVLGACAVL 74 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~------~~g~wr~~f~i~~~~~~~~~~ 74 (285)
+.|+.++..+|+...+++.||.++||++.+|++++..++|.++|.+++..+.. .. ||||.|++.|+++++..+
T Consensus 143 llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~-gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 143 LLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA-GWRWLFIIEGVITLVLGI 221 (495)
T ss_pred HHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC-CceeehhHHHHHHHHHHh
Confidence 46999999999999999999999999999999999999999999999998743 34 599999999999999999
Q ss_pred HHHHhccCCcCccc----cC----------c-c-ccccccHHHHHHHHhhhhhhHHH-----------HHHHHHHHHHHH
Q psy5252 75 LILFFMEDPERGEA----EG----------R-V-TEERTSFGEDIRALCKNHRETWI-----------FLNLNWSIVADM 127 (285)
Q Consensus 75 l~~~~~~~~~~~~~----~~----------~-~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 127 (285)
+.++++|+.|.+.. ++ . + ..+++..+..+++.+++|.+|.+ +.+.+|.|.+..
T Consensus 222 ~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~ 301 (495)
T KOG2533|consen 222 VVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLK 301 (495)
T ss_pred eEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999987654211 00 0 0 01111234567778888887752 224556665544
Q ss_pred HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhh
Q psy5252 128 TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFR 168 (285)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~ 168 (285)
...+.+..+.+.... ..-++++++.++.|.++||++
T Consensus 302 ~~~~~s~~~a~~ls~-----~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 302 SNGGYSELQANLLST-----PYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred cCCCcChHHhccccc-----hHHhhhHHHHHHHHHHHHHHh
Confidence 322233333333222 223667778889999999954
No 35
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.68 E-value=5.6e-17 Score=140.37 Aligned_cols=242 Identities=10% Similarity=-0.026 Sum_probs=146.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHH--HHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQM--LAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~--~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
+|.+.+...|...+++.|+.|+++|++. .++...+.++|.++++++++.+.+.++ ||+.|++.++..++..++..++
T Consensus 97 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~ 175 (375)
T TIGR00899 97 LSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLTAALAFVLCGVLVWLF 175 (375)
T ss_pred HHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566778888899999988777755 688888999999999999999998886 9999999998877777666666
Q ss_pred ccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH--H---------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHh
Q psy5252 80 MEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF--L---------NLNWSIVADMTLYVVLPLRRSTAEAFQILIS 148 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (285)
+||+++++.+++ ++ .+.+..++++.++... . ...+.+.+.....+.++.+.+...+..
T Consensus 176 ~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~---- 244 (375)
T TIGR00899 176 LPSYPRGAPGAL---TR----LEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTA---- 244 (375)
T ss_pred CCCcccCccccc---Cc----chhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHH----
Confidence 777554322111 11 1122344555443311 1 111223333333444444433332211
Q ss_pred hhccccchhhhhHHHhHHhhhhhcccceeee--ee---cccc-cc--cc-cccccccccc-CCcchhhhhccccCCcch-
Q psy5252 149 HAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLP-SS--LA-PSLPFSSSNS-TSLPLVSSLDETAHRSDE- 217 (285)
Q Consensus 149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~-~~--~~-~~~~~~~~~~-~~~~~~~~~~~~~p~~~r- 217 (285)
......+.++.|++.||+++|+........ .. .... +. +. ...+...+.+ .........+|..|++.+
T Consensus 245 -~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 323 (375)
T TIGR00899 245 -AGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGA 323 (375)
T ss_pred -HHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhH
Confidence 123344567899999999988755432211 00 1111 11 11 1111111112 222335667788887654
Q ss_pred ---------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 218 ---------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 218 ---------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.++..++|.+.|.+.|..|++..+...+++.+++.++..
T Consensus 324 ~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 324 ATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 156689999999999999999999887777776666543
No 36
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.68 E-value=2.5e-16 Score=137.88 Aligned_cols=246 Identities=10% Similarity=0.061 Sum_probs=148.2
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+ ..+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ ||+.|++.+++.++..+...++.|
T Consensus 117 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 117 LGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred HHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455543 467788899999999999999999999999999999999999998886 999999999887777766666777
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH---HH---------HHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL---NL---------NWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
|++++..+++ +.+.++ ....++++.+++... .. .+.+.+.. ....+....+...+... ...
T Consensus 195 ~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~ 267 (408)
T PRK09874 195 ENFQPVSKKE----MLHMRE-VVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVR-ELAGNVSNIAFISGMIA-SVP 267 (408)
T ss_pred cCcccccchh----hhHHHH-HHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccchHHHHHHHHHH-HHH
Confidence 6543221111 111222 233455665433111 00 11111111 11111111111222221 122
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeee-----eeccc-ccc--c-cccccccccccCCcc-hhhhhccccCCcch--
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAML-PSS--L-APSLPFSSSNSTSLP-LVSSLDETAHRSDE-- 217 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~-~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r-- 217 (285)
.++.+++.+..|+++||+++++........ +.... +.. + ....+...+.+...| ..+.+.+..|++.|
T Consensus 268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 347 (408)
T PRK09874 268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGR 347 (408)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccccee
Confidence 344556677889999999988765542211 00111 111 1 111112222222333 35566777887765
Q ss_pred ---------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 218 ---------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 218 ---------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.++..+||.++|.+.|..||+..|++.+++.+++.+...
T Consensus 348 ~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 348 IFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred eehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 267789999999999999999999988877777666544
No 37
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.68 E-value=7.1e-17 Score=140.35 Aligned_cols=241 Identities=12% Similarity=0.125 Sum_probs=144.3
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...+++.|++|+++|+++++++..+..+|..+++++++.+.+..+ ||+.|++.++..++..+...+.+
T Consensus 100 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~l 178 (382)
T PRK10091 100 VSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFLLIAVFNIAVLASIYFWV 178 (382)
T ss_pred HHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 36788888888888999999999999999999999999999999999999998886 99999999988777666666667
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--------HH---HHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--------NL---NWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
||.++++ ++ +.++.++ .++++..+.... .. .+.+.+....++.++++.+.... ..
T Consensus 179 p~~~~~~--~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-----~~ 244 (382)
T PRK10091 179 PDIRDEA--KG------GLREQFH-FLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMM-----LV 244 (382)
T ss_pred CCCCccc--cc------CHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-----HH
Confidence 7653221 10 1122233 345554443211 01 11122222223334333333222 22
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceee--eeec----ccccc---c-ccccccccc-ccCCcchhh-hhccccCCcch
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTL--VANA----MLPSS---L-APSLPFSSS-NSTSLPLVS-SLDETAHRSDE 217 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~~~----~~~~~---~-~~~~~~~~~-~~~~~~~~~-~~~~~~p~~~r 217 (285)
.++.+++.++.|++.||+++++....... .++. ...+. . ........+ .+...+... ...+..|++.+
T Consensus 245 ~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (382)
T PRK10091 245 GLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELL 324 (382)
T ss_pred HHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHH
Confidence 36667788899999999998865543221 1111 11111 1 111111111 122222222 33344444433
Q ss_pred ---------hhhccccchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHH
Q psy5252 218 ---------FLAHKSDEFLAHKSDEF-LALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 218 ---------~l~~~~~p~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.+|+.+||.+.|.+.|. .+|+..+...+++.++......
T Consensus 325 ~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 325 GAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 26779999999999996 5798888876655554444333
No 38
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.67 E-value=3.1e-17 Score=141.76 Aligned_cols=233 Identities=15% Similarity=0.106 Sum_probs=142.9
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHH-HHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGY-IVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~-~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+|++.+...+...++++|++|+|+|++++++.+.+.++|..+++ .++..+.+..+ ||+.|++.+++.++..++..++.
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHheee
Confidence 58888999999999999999999999999999999999999999 46677767665 99999998888777666666666
Q ss_pred cCCcCcccc----C---cc-----c---cccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCC
Q psy5252 81 EDPERGEAE----G---RV-----T---EERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLP 134 (285)
Q Consensus 81 ~~~~~~~~~----~---~~-----~---~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 134 (285)
+|+++++.. + ++ + ++........+..+++|.++... ....|.+.+.....+.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 251 (379)
T TIGR00881 172 RDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSK 251 (379)
T ss_pred CCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 665432110 0 00 0 00011223455667777765421 122233443333334444
Q ss_pred CCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee-----ee---eeccc-c--cc-c--cccccccc-ccc
Q psy5252 135 LRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST-----LV---ANAML-P--SS-L--APSLPFSS-SNS 199 (285)
Q Consensus 135 ~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~-----~~---~~~~~-~--~~-~--~~~~~~~~-~~~ 199 (285)
.+.+..... ..++.+++.++.|+++||..+++...... .. ..+.. + .. . .....+.. ..+
T Consensus 252 ~~~~~~~~~-----~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 326 (379)
T TIGR00881 252 EKASWAFTL-----YELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYG 326 (379)
T ss_pred HHHHHHHHH-----HHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhh
Confidence 333333332 23566778889999999875443222211 00 01111 1 11 1 11111111 122
Q ss_pred CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHH
Q psy5252 200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYA 240 (285)
Q Consensus 200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~ 240 (285)
..........|.+|++.|. ++..++|.+.|.+.|+.||+.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 327 PQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 2233356678999999881 5668999999999999888764
No 39
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.67 E-value=1.6e-16 Score=137.98 Aligned_cols=235 Identities=15% Similarity=-0.000 Sum_probs=140.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHHHhhHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~i~~~~~~~~ 72 (285)
++|++.+...+...++++|++|+|+|++.+++.+.+..+|..+++.++..+.. .++ ||+.|.+.+++.++.
T Consensus 105 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~ 183 (394)
T TIGR00883 105 IQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWG-WRIPFLVSAVLVLIG 183 (394)
T ss_pred HHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccc-hHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999998877643 454 999998877665554
Q ss_pred HHHHHHhccCCcCccccCcc-ccccccHHHHHHHHhhhhh--hHHHH-----------HHHHHHHHHHHHHHhcCCCCcc
Q psy5252 73 VLLILFFMEDPERGEAEGRV-TEERTSFGEDIRALCKNHR--ETWIF-----------LNLNWSIVADMTLYVVLPLRRS 138 (285)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 138 (285)
. ......+|+++.+.++++ ++++ +.++..++++. ++... ....+.+.+.....+.++.+.+
T Consensus 184 ~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 258 (394)
T TIGR00883 184 L-YLRRNLEETPVFEKAQEKHKKKR----GPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSAL 258 (394)
T ss_pred H-HHHHhcCCChhHHHHHhcccccc----CCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 3 333455554432211111 1111 12333344433 32211 1122333333233334433333
Q ss_pred hhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee---eeee---c-cc---ccc-c-ccc-cccc-ccccCCcch
Q psy5252 139 TAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST---LVAN---A-ML---PSS-L-APS-LPFS-SSNSTSLPL 204 (285)
Q Consensus 139 ~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~---~~~~---~-~~---~~~-~-~~~-~~~~-~~~~~~~~~ 204 (285)
.... ...++..++.++.|+++||+++|+...... .... . .. ... . ... .... .......+.
T Consensus 259 ~~~~-----~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 333 (394)
T TIGR00883 259 LVLM-----LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPM 333 (394)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhH
Confidence 3222 223455666789999999999987554311 1111 0 11 111 1 111 1111 123445567
Q ss_pred hhhhccccCCcchh------------hhccccchhhhhhhhhhh-hHHHHHHHHH
Q psy5252 205 VSSLDETAHRSDEF------------LAHKSDEFLAHKSDEFLA-LQYALFITSF 246 (285)
Q Consensus 205 ~~~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~ 246 (285)
.+.+.|.+|+++|. ++..++|.+.|++.|+.| ++..++....
T Consensus 334 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 78899999998871 344688999999999988 7665554443
No 40
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.66 E-value=2.5e-16 Score=137.45 Aligned_cols=245 Identities=7% Similarity=-0.060 Sum_probs=139.7
Q ss_pred cccccchhHHHHhhcccCCch--hHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCC
Q psy5252 6 EASYSTIAPTIISDLFVKDLR--SQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDP 83 (285)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~~~r--g~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~ 83 (285)
.+...|...+++.|+.++++| +...++.+.+.++|.+++|++++.+.+++| ||..|++.++..++..++....+||.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~ 197 (393)
T PRK15011 119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMYLSAAVAFIVCGVMVWLFLPSM 197 (393)
T ss_pred HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 345567778888888877655 345688999999999999999999998886 99999999988877776766777776
Q ss_pred cCccccCccccc--cccHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhh
Q psy5252 84 ERGEAEGRVTEE--RTSFGEDIRALCKNHRETW-IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLI 160 (285)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 160 (285)
++++.+.+++.+ ++..++.+.........+. ......|.|.+....++.++.+.+...+. ..+..+++.++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~-----~~~~~i~~~~~~ 272 (393)
T PRK15011 198 RKELPLATGTLEAPRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGT-----AAGLEIPTMLIA 272 (393)
T ss_pred CCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 433221111000 0000000000000000000 11122344444333445554444433221 123445667899
Q ss_pred HHHhHHhhhhhcccceeee--eec---ccccc--ccc-ccccc-ccc-cCCcchhhhhccccCCcch----------hhh
Q psy5252 161 GLLSEMFRHSLQLGASTLV--ANA---MLPSS--LAP-SLPFS-SSN-STSLPLVSSLDETAHRSDE----------FLA 220 (285)
Q Consensus 161 G~l~d~~~~~~~~~~~~~~--~~~---~~~~~--~~~-~~~~~-~~~-~~~~~~~~~~~~~~p~~~r----------~l~ 220 (285)
|+++||+++|+........ ..+ ..... ..+ ..+.. ... ...+......+|..|++.+ .+|
T Consensus 273 G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg 352 (393)
T PRK15011 273 GYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVG 352 (393)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 9999999998754432110 001 11111 111 11100 001 1122234556788887644 166
Q ss_pred ccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 221 HKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 221 ~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
..++|.+.|.+.|+.||+..+...+++.+++.+.+.
T Consensus 353 ~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 353 WIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988877766666555444
No 41
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.66 E-value=7e-16 Score=134.89 Aligned_cols=238 Identities=14% Similarity=0.071 Sum_probs=135.1
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...|...+++.|++|+|+|++++|+.+...++|..+||.+++++. .++ ||+.|++.++..++..++...+.|
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 109 SGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 577777888999999999999999999999999999999999999999999 565 999999988877666555555555
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH-----------HHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN-----------LNWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
|++.+ + ++++.++.++..+++|.++..... ..+.|.+.. ..+.++...+...+ ....
T Consensus 187 ~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~l~~----~~~~ 254 (400)
T PRK11646 187 AYKLS--T-----VRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVN-DIAGSPSAVKWMYA----IEAC 254 (400)
T ss_pred ccccc--c-----cchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHH-hhcCCchHHHHHHH----HHHH
Confidence 43211 0 111234556677788876541110 011122211 11112222222222 1112
Q ss_pred ccccchhhhhHHHhH-Hhhhhhcccceee--eeec---cccc-c--c-ccccccccccc-CCcchhhhhccccCCcchh-
Q psy5252 151 FGDAGSPYLIGLLSE-MFRHSLQLGASTL--VANA---MLPS-S--L-APSLPFSSSNS-TSLPLVSSLDETAHRSDEF- 218 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d-~~~~~~~~~~~~~--~~~~---~~~~-~--~-~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~- 218 (285)
.+... ....+++.| |++.++.....+. .++. ...+ . + .....+..+.+ ...+..+.+.|.+|+++|.
T Consensus 255 ~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~ 333 (400)
T PRK11646 255 LSLTL-LYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGS 333 (400)
T ss_pred HHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchh
Confidence 22222 223344444 4544432222111 1111 1111 1 1 11111222222 2334467788999998871
Q ss_pred ----------hhccccchhhhhhhhhhh----hHHHHHHHHHHHHHHHHH
Q psy5252 219 ----------LAHKSDEFLAHKSDEFLA----LQYALFITSFIEVLGGIF 254 (285)
Q Consensus 219 ----------l~~~~~p~~~G~~~~~~~----~~~~~~~~~~~~~~~~~~ 254 (285)
++..+||.+.|.+.|+.+ ....+...+++.+++.+.
T Consensus 334 ~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 334 YMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 567899999999999753 245555544444444433
No 42
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.65 E-value=4.2e-16 Score=136.27 Aligned_cols=240 Identities=13% Similarity=-0.017 Sum_probs=140.3
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...+++.|++|+|+|++++++...+..+|.++|+++++.+.+.++ ||+.+++..+..++..+.. ...
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~-~~~ 198 (399)
T PRK05122 121 LLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG-LAGLGLLIMLLALLGLLLA-RPR 198 (399)
T ss_pred HHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHH-hcC
Confidence 36889999999999999999999999999999999999999999999999999886 9999887766554333221 111
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccc
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----LNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAG 155 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 155 (285)
|+.+ + ++ +++.+.++.++..++........ ....|.+.+.. ..+. ...+.... ...++.++
T Consensus 199 ~~~~--~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~ 264 (399)
T PRK05122 199 PAVP--P-VK---GERLPFRRVLGRVWPYGMGLALASIGFGTIATFITLYYA-ARGW--DGAALALT-----LFGVAFVG 264 (399)
T ss_pred CCCC--C-CC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hccc--ccchHHHH-----HHHHHHHH
Confidence 2111 1 11 11112223333222222111111 11123333321 1121 12222222 22355566
Q ss_pred hhhhhHHHhHHhhhhhcccceee--eeec---ccc-cc--ccc-cccccccccCCcc-hhhhhccccCCcchh-------
Q psy5252 156 SPYLIGLLSEMFRHSLQLGASTL--VANA---MLP-SS--LAP-SLPFSSSNSTSLP-LVSSLDETAHRSDEF------- 218 (285)
Q Consensus 156 g~~~~G~l~d~~~~~~~~~~~~~--~~~~---~~~-~~--~~~-~~~~~~~~~~~~~-~~~~~~~~~p~~~r~------- 218 (285)
+.++.|++.||+++++....... ...+ ... +. +.. ..+...+.+...| ......|.+|++.|.
T Consensus 265 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 344 (399)
T PRK05122 265 ARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYS 344 (399)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 78899999999998865543211 1111 111 11 111 1112222222222 345566888888871
Q ss_pred ----hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 219 ----LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 219 ----l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
++..++|.+.|.+.|+.|++..++..+.+.+++.+...
T Consensus 345 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 345 VFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999877776666554433
No 43
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.65 E-value=3.1e-16 Score=141.10 Aligned_cols=252 Identities=14% Similarity=0.064 Sum_probs=145.1
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-----------------------ccCC
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-----------------------VMGA 57 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-----------------------~~g~ 57 (285)
++|++.+...+....+++|++|+++|++++++.+....+|..+++.++..+.. .. +
T Consensus 124 l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 202 (502)
T TIGR00887 124 WLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDY-M 202 (502)
T ss_pred HHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcc-c
Confidence 36899999999999999999999999999999999999999999998876542 12 4
Q ss_pred chHHHHHhhHHHHHHHHHHHHhccCCcCc----ccc-Cc-------------c-c-cc-------cccHHHHHHHHhhh-
Q psy5252 58 WPWSLRVTPVLGACAVLLILFFMEDPERG----EAE-GR-------------V-T-EE-------RTSFGEDIRALCKN- 109 (285)
Q Consensus 58 wr~~f~i~~~~~~~~~~l~~~~~~~~~~~----~~~-~~-------------~-~-~~-------~~~~~~~~~~~~~~- 109 (285)
||+.|.+.++.+++.. +..+++||+|+. .++ ++ + + ++ ++..+..+++++++
T Consensus 203 WR~~~~~~~ip~~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 281 (502)
T TIGR00887 203 WRILIGFGAVPALLAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHF 281 (502)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHH
Confidence 9999988777766544 556788997652 111 00 0 0 00 00011234444432
Q ss_pred --hhh-H-HHHHHH-------------HHHHHHHHHHHhcCCCCcchh-------HHHHHHHhhhccccchhhhhHHHhH
Q psy5252 110 --HRE-T-WIFLNL-------------NWSIVADMTLYVVLPLRRSTA-------EAFQILISHAFGDAGSPYLIGLLSE 165 (285)
Q Consensus 110 --~~~-~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~g~~~~G~l~d 165 (285)
+.. . ...... .|.|.+. ...+.+....+.. ..........++.+++.++.++++|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d 360 (502)
T TIGR00887 282 FKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVD 360 (502)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 0 000000 1112221 2234433221111 1111122233455667788999999
Q ss_pred Hhhhhhccccee-------eeeeccc---cc-c-ccccccc-c-ccccCCcchhhhhccccCCcchh-----------hh
Q psy5252 166 MFRHSLQLGAST-------LVANAML---PS-S-LAPSLPF-S-SSNSTSLPLVSSLDETAHRSDEF-----------LA 220 (285)
Q Consensus 166 ~~~~~~~~~~~~-------~~~~~~~---~~-~-~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~r~-----------l~ 220 (285)
|+|||+...... ..+++.. .. . +....++ . ...+..+..+....|.+|++.|. ++
T Consensus 361 r~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~ 440 (502)
T TIGR00887 361 IIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAG 440 (502)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhH
Confidence 999997654321 1111111 11 1 1111111 1 12233344566778999999992 55
Q ss_pred ccccchhhhhhhhh----------hhhHHHHHHHHHHHHHHHHHH
Q psy5252 221 HKSDEFLAHKSDEF----------LALQYALFITSFIEVLGGIFF 255 (285)
Q Consensus 221 ~~~~p~~~G~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 255 (285)
+.++|.+.|.+.|. .++...+.+.+++.+++.+.+
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 441 AIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred HHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 68999999998884 344566777776666665544
No 44
>PRK12382 putative transporter; Provisional
Probab=99.65 E-value=6.9e-16 Score=134.58 Aligned_cols=239 Identities=16% Similarity=0.017 Sum_probs=142.1
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...+++.|++|+|||++++++++.+.++|..+++++++.+.+.++ ||+.+.+..+..++.. ......
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~-~~~~~~ 198 (392)
T PRK12382 121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG-FAALALTTMVLPLLAW-AFNGTV 198 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH-HHHHhc
Confidence 36888888888899999999999999999999999999999999999999998886 9988776555443322 111222
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccc
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDA 154 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 154 (285)
||.++ +++ ++.+.++..+..++ +...... ....|.+.+.. +.+.+ ..+. ......++.+
T Consensus 199 ~~~~~---~~~---~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~-----~~~~~~~~~~ 263 (392)
T PRK12382 199 RKVPA---HAG---ERPSLWSVVGLIWK-PGLGLALQGVGFAVIGTFVSLYFA-SKGWA--MAGF-----TLTAFGGAFV 263 (392)
T ss_pred cCCCC---Ccc---cCchHHHHHHHHHH-hHHHHHHHHHHHhHHHHHHHHHHH-hcCCc--hhHH-----HHHHHHHHHH
Confidence 22211 111 11123333333332 2221111 11222232221 11211 1111 1222335556
Q ss_pred chhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--cccc-ccccccccCCc-chhhhhccccCCcch-------
Q psy5252 155 GSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAPS-LPFSSSNSTSL-PLVSSLDETAHRSDE------- 217 (285)
Q Consensus 155 ~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~~-~~~~~~~~~~~-~~~~~~~~~~p~~~r------- 217 (285)
++.++.|++.||+++++........ +. ... ++. .... .....+.+... ...+.+.|.+|+++|
T Consensus 264 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 343 (392)
T PRK12382 264 LMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY 343 (392)
T ss_pred HHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6788999999999988655432211 11 111 111 1111 11112222222 345667788998887
Q ss_pred ----hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 218 ----FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 218 ----~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.+++.++|.+.|.+.|+.||+..+...+.+.+++.+...
T Consensus 344 ~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 344 AAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 166789999999999999999999888877777665544
No 45
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.64 E-value=4.3e-16 Score=136.55 Aligned_cols=165 Identities=16% Similarity=0.098 Sum_probs=111.6
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+...+++.|++|+++|.+.+++......+|..++|.+++.+.++.+ ||+.|++.++..++..+...+..|
T Consensus 111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T PRK15402 111 QGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WRGMFVLFAALAALSFFGLWRAMP 189 (406)
T ss_pred HHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHhCC
Confidence 5778888888999999999999999999999999999999999999999998875 999999988887776666656666
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH--------HH---HHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN--------LN---WSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
|++++..++ .+..+..+.++..+++|.++..... .. +.|.+....++.++.+.+... ....
T Consensus 190 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~-----~~~~ 261 (406)
T PRK15402 190 ETAGRVGEK---LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQ-----VPVF 261 (406)
T ss_pred CCCcccccc---ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHH-----HHHH
Confidence 654322111 1112345567778888877652211 11 123222222333332222221 1223
Q ss_pred ccccchhhhhHHHhHHhhhhhcccc
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGA 175 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~ 175 (285)
++.+++.++.|+++||+++++....
T Consensus 262 ~~~~~g~~~~g~l~~r~~~~~~~~~ 286 (406)
T PRK15402 262 GALIAGNLTLARLTSRRPLRSLIRM 286 (406)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4566678899999999998875544
No 46
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.64 E-value=8.5e-16 Score=150.92 Aligned_cols=245 Identities=14% Similarity=0.065 Sum_probs=149.9
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+.+.|+..+++.|++|+++|++++|+.+++.++|.++||++++++....+ |++.|+...+..++. ++..+++
T Consensus 117 l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 194 (1140)
T PRK06814 117 LMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLG-WLASLFI 194 (1140)
T ss_pred HHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH-HHHHhhC
Confidence 47899999999999999999999999999999999999999999999999999885 999995554444443 3444556
Q ss_pred cCCcCccccCccc-cccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHh
Q psy5252 81 EDPERGEAEGRVT-EERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILIS 148 (285)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (285)
++++......+.+ ....+....++.+.+++.++... ....|.|.+....++.++...+...+ .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~-----~ 269 (1140)
T PRK06814 195 PKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLA-----V 269 (1140)
T ss_pred CCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHH-----H
Confidence 5543322111110 11112345677788888776522 12234444443334444444444333 3
Q ss_pred hhccccchhhhhHHHhHHhhhhhccccee-------eeeecc-----------------c--ccc--ccc-ccccc-ccc
Q psy5252 149 HAFGDAGSPYLIGLLSEMFRHSLQLGAST-------LVANAM-----------------L--PSS--LAP-SLPFS-SSN 198 (285)
Q Consensus 149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~-----------------~--~~~--~~~-~~~~~-~~~ 198 (285)
..+|.++|.++.|+++|+..+++...... +.+.+. . ... +.+ .++++ +..
T Consensus 270 ~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (1140)
T PRK06814 270 FSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGG 349 (1140)
T ss_pred HHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHH
Confidence 33677778889999988766554332211 001110 0 111 111 11111 123
Q ss_pred cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhh-hhhhHHHHHHHHHHHHHHH
Q psy5252 199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDE-FLALQYALFITSFIEVLGG 252 (285)
Q Consensus 199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~-~~~~~~~~~~~~~~~~~~~ 252 (285)
..+.+..+.+++.+|++.|. ++..+++.+.|.+.+ ..++...+++.+++.++..
T Consensus 350 ~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 350 LYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVA 415 (1140)
T ss_pred HhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 44455678899999999971 455788888888874 3456666554444433333
No 47
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.63 E-value=1.7e-16 Score=141.21 Aligned_cols=249 Identities=18% Similarity=0.155 Sum_probs=144.7
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHH---HHhhhccCCchHHHHHhhHHHHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVG---STAFSVMGAWPWSLRVTPVLGACAVLLIL 77 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~---~~l~~~~g~wr~~f~i~~~~~~~~~~l~~ 77 (285)
++|++.+...+...++++|++|+++|++++++++.+.++|..+++.++ ..+....+ ||+.|++.++..++.. +..
T Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~-~~~ 213 (481)
T TIGR00879 136 LLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG-WRIPLGLQLIPAGLLF-LGL 213 (481)
T ss_pred HHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHHH-HHH
Confidence 468899999999999999999999999999999999999999999999 66656665 9999999666555444 445
Q ss_pred HhccCCcCccc---cCcc-----------ccccccHHH------------------HHHHHhhh-----hhhHHHHH--H
Q psy5252 78 FFMEDPERGEA---EGRV-----------TEERTSFGE------------------DIRALCKN-----HRETWIFL--N 118 (285)
Q Consensus 78 ~~~~~~~~~~~---~~~~-----------~~~~~~~~~------------------~~~~~~~~-----~~~~~~~~--~ 118 (285)
+++||+++... +.++ ++++....+ .++..++. +...+... .
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (481)
T TIGR00879 214 FFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQW 293 (481)
T ss_pred hcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHH
Confidence 66676542100 0000 000000000 00111111 11111100 0
Q ss_pred ----------HHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee-------eee
Q psy5252 119 ----------LNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL-------VAN 181 (285)
Q Consensus 119 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~-------~~~ 181 (285)
..+.+. .....+.+....+.... ...++.+++.++.|+++||+++|+....... ...
T Consensus 294 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
T TIGR00879 294 FQQFTGINAIMYYSPT-IFENAGVSTDHAFLVSI-----IVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367 (481)
T ss_pred HHHHhCCeehHHHHHH-HHHHcCCCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 111121 12223333322222222 2234455677899999999999876544211 111
Q ss_pred ---cc-cc------cc--ccccccc-c-ccccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh
Q psy5252 182 ---AM-LP------SS--LAPSLPF-S-SSNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA 236 (285)
Q Consensus 182 ---~~-~~------~~--~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~ 236 (285)
.. .. .. +....++ . .+.+..........|.+|++.|. +++.++|.+.|.+.++.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~ 447 (481)
T TIGR00879 368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG 447 (481)
T ss_pred HHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 01 11 1111111 1 11233333456678999998871 667899999999999889
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy5252 237 LQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ 257 (285)
++..|+..+++.+++.++...
T Consensus 448 ~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 448 VGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred ccceehhHHHHHHHHHHHHhe
Confidence 998888777777666665543
No 48
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.63 E-value=6.4e-16 Score=138.25 Aligned_cols=83 Identities=23% Similarity=0.456 Sum_probs=69.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh--------hccCCchHHHHHhhHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF--------SVMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~--------~~~g~wr~~f~i~~~~~~~~ 72 (285)
++|++.|...|...++++|++|+++|++++++.+.+..+|..+++.++..+. +.++ ||+.|++.+++.++.
T Consensus 129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~ 207 (479)
T PRK10077 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLF 207 (479)
T ss_pred HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999988876654 2354 999999988877776
Q ss_pred HHHHHHhccCCcC
Q psy5252 73 VLLILFFMEDPER 85 (285)
Q Consensus 73 ~~l~~~~~~~~~~ 85 (285)
. +..+++||+++
T Consensus 208 ~-~~~~~l~~s~~ 219 (479)
T PRK10077 208 L-MLLYFVPETPR 219 (479)
T ss_pred H-HHHHcCCCCcH
Confidence 5 44567787664
No 49
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.62 E-value=4.6e-16 Score=135.85 Aligned_cols=237 Identities=14% Similarity=0.083 Sum_probs=139.7
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHHh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ +||+.|++.++..++.. +....
T Consensus 109 l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~ 187 (405)
T TIGR00891 109 VIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKN 187 (405)
T ss_pred HHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHh
Confidence 36888999999999999999999999999999999999999999999999987653 49999988766554443 44455
Q ss_pred ccCCcCccccCccc-ccc----------ccHHHHHH----HHh----hhhh-hHH---HHH--------HHHHHHHHHHH
Q psy5252 80 MEDPERGEAEGRVT-EER----------TSFGEDIR----ALC----KNHR-ETW---IFL--------NLNWSIVADMT 128 (285)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~----------~~~~~~~~----~~~----~~~~-~~~---~~~--------~~~~~~~~~~~ 128 (285)
.||+++.+.+++++ +.+ ...++..+ ... +++. +.. ... ...+.+.+...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (405)
T TIGR00891 188 IPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKA 267 (405)
T ss_pred CCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 66654321111100 000 00000000 000 0000 111 000 11122333333
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee------ecccccc---ccccccc--ccc
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA------NAMLPSS---LAPSLPF--SSS 197 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~--~~~ 197 (285)
..+.++.+.+.... ...++.+++.++.|+++||+++|+......... .+..... +.....+ ...
T Consensus 268 ~~g~s~~~~~~~~~-----~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (405)
T TIGR00891 268 DLGLSPHTVANIVV-----FSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV 342 (405)
T ss_pred HhCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 33444433333322 223566778889999999999987654422111 0111111 1111111 112
Q ss_pred ccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHH
Q psy5252 198 NSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFI 243 (285)
Q Consensus 198 ~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~ 243 (285)
.+........++|.+|++.|. ++..++|.+.|.+.|+.| |+.++..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 334445567888999999882 566899999999999988 7776654
No 50
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.61 E-value=2.7e-15 Score=130.88 Aligned_cols=247 Identities=17% Similarity=0.093 Sum_probs=142.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...|+..+++.|++|+|||++++|+.+...++|.++||.+++++.+. . |+..+.+.+...++.. +..+.+
T Consensus 97 l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~-~~~~~~i~~~~~~~~~-~~~~~l 173 (393)
T PRK11195 97 LVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-H-AEAALAVCALIYLLAA-LFNLFI 173 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH-HHHhcC
Confidence 478999999999999999999999999999999999999999999999999985 3 8888877765544433 444566
Q ss_pred cCCcCccccCcccc--ccccHHHHHHHHhhhhhhHHHHH--HHHHH---------HHHHHHHHhcCCCCcchhHHHHHHH
Q psy5252 81 EDPERGEAEGRVTE--ERTSFGEDIRALCKNHRETWIFL--NLNWS---------IVADMTLYVVLPLRRSTAEAFQILI 147 (285)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (285)
||+++++++.+.+. ...+.++..+.++++|.+..... ...+. +.+....++.++.+.|... .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~-----~ 248 (393)
T PRK11195 174 PRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQ-----A 248 (393)
T ss_pred CCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHH-----H
Confidence 76543221111111 01223344566777776543111 11111 1111122344444433333 2
Q ss_pred hhhccccchhhhhHHHhHHhhhhhcccceeee----eecccccc-c--cc-ccccccc-ccCCcchhhhhccccCCcc-h
Q psy5252 148 SHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV----ANAMLPSS-L--AP-SLPFSSS-NSTSLPLVSSLDETAHRSD-E 217 (285)
Q Consensus 148 ~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~----~~~~~~~~-~--~~-~~~~~~~-~~~~~~~~~~~~~~~p~~~-r 217 (285)
...+|.++|.++.+++.||.++++........ ..+...+. + .. ......+ .....|..+.++|..|++. +
T Consensus 249 ~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~ 328 (393)
T PRK11195 249 VVAIGIAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGA 328 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccc
Confidence 33467777777888888876665433222111 01111111 1 11 1112222 3334566777888766654 3
Q ss_pred -----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 218 -----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 218 -----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.++..++..+.+.+ +..|.+..+.+.....+++..+..
T Consensus 329 g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 329 GHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 14446677777744 667877777766555555444433
No 51
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.60 E-value=2.5e-15 Score=130.40 Aligned_cols=165 Identities=14% Similarity=0.140 Sum_probs=114.4
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...+++.|++|+|+|++++++.+....+|..+++.+++.+.+..+ ||+.|++.++..++..+...+..
T Consensus 102 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00710 102 VQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAFLSLAGILLSALIFFIL 180 (385)
T ss_pred HHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 36788888999999999999999999999999999999999999999999999886 99999998888777766666666
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
||+++++.++ +.++..+.++..+++|.++.... ...+.+.+....++.++.+.+.... ..
T Consensus 181 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-----~~ 251 (385)
T TIGR00710 181 PETLPYEARI----QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFA-----LN 251 (385)
T ss_pred CCCCCCcccC----CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHH-----HH
Confidence 6654332211 11122345666777877654211 1111222222233444333333322 22
Q ss_pred hccccchhhhhHHHhHHhhhhhcccc
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGA 175 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~ 175 (285)
.++.+++.++.|+++||+++|+....
T Consensus 252 ~~~~~~~~~~~g~l~~~~~~~~~~~~ 277 (385)
T TIGR00710 252 IIAMIFGGFLNGRFIKKWGAKSLLRM 277 (385)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 35667778899999999999876554
No 52
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.60 E-value=1.8e-15 Score=127.63 Aligned_cols=236 Identities=11% Similarity=0.020 Sum_probs=142.5
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc---------------CCchHHHHHh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM---------------GAWPWSLRVT 65 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~---------------g~wr~~f~i~ 65 (285)
+.|.|.+...+.++.++++..++|++++.+++.+....+|..++|.+++.+.... .+||++|++.
T Consensus 19 ~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~i 98 (310)
T TIGR01272 19 VLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLL 98 (310)
T ss_pred HHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999887321 1499999977
Q ss_pred hHHHHHHHHHHH-HhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHH--Hh
Q psy5252 66 PVLGACAVLLIL-FFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTL--YV 131 (285)
Q Consensus 66 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~ 131 (285)
+.+..+..+++. ...||.++++.++. ++++ + ...+..+++|.+++.. ....|.+.|.... ++
T Consensus 99 a~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~-~--~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g 174 (310)
T TIGR01272 99 AGALAVLAIIFAFLPLPELQEADVARV-SSGD-T--TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALG 174 (310)
T ss_pred HHHHHHHHHHHHHccCCCCCccccccc-cccc-c--cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 666555443332 22333222111110 0111 0 0112245555554411 2344556554321 24
Q ss_pred cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eeccccc-c--ccccccccccccCCcc
Q psy5252 132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLPS-S--LAPSLPFSSSNSTSLP 203 (285)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~~-~--~~~~~~~~~~~~~~~~ 203 (285)
.+++..+...+.. ..+..+|+++++++.||+++++..+..... +.+...+ . ......+..+.+...|
T Consensus 175 ~s~~~a~~~~s~~-----~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P 249 (310)
T TIGR01272 175 LPEDQAAHFTAYT-----WGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFP 249 (310)
T ss_pred CCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 377788999999999999988766542211 0011111 1 1111112222233333
Q ss_pred -hhhhhccccCCcch---------hhhccccchhhhhhhhhhhhHHHHHHHH
Q psy5252 204 -LVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFLALQYALFITS 245 (285)
Q Consensus 204 -~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~~~~~~~~~~~ 245 (285)
..+...+..|++.. .+|+++.|.+.|.+.|+.|.+.++++..
T Consensus 250 ~~~s~a~~~~~~~~~~asai~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 250 TIFSLALNALGRHTSQGSGILCLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 34555566665432 2677999999999999999988887433
No 53
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.60 E-value=3.2e-15 Score=129.60 Aligned_cols=166 Identities=17% Similarity=0.141 Sum_probs=113.2
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.+++.+.+..+ ||+.|++.+++.++..++..+..|
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5777888888999999999999999999999999999999999999999999886 999999988888777666666777
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
|+++++++++ .+.++..+.++..+++|.++.... ...+.+.+....++.++.+.+.... ...
T Consensus 168 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~-----~~~ 240 (377)
T PRK11102 168 ETLPKERRQP--FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFA-----LNI 240 (377)
T ss_pred ccCcccccCC--CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHH-----HHH
Confidence 6543321111 111112344556677776554211 1112222223334444444333332 233
Q ss_pred ccccchhhhhHHHhHHhhhhhcccc
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGA 175 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~ 175 (285)
++.+++.++.|++.||+++|+....
T Consensus 241 ~~~~~~~~~~g~l~~r~g~~~~~~~ 265 (377)
T PRK11102 241 VFLFVMTIINSRFVRRVGALNMLRF 265 (377)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 5566678899999999999876554
No 54
>PRK10504 putative transporter; Provisional
Probab=99.59 E-value=1.7e-15 Score=135.22 Aligned_cols=82 Identities=16% Similarity=0.357 Sum_probs=71.1
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...|...+++.|++|+++|++++++.....++|..++|.+++.+.++.+ ||+.|++......+..++.....
T Consensus 107 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f~~~~~~~~l~~~~~~~~~ 185 (471)
T PRK10504 107 LQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIFLINIPVGIIGAIATLMLM 185 (471)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 36888999999999999999999999999999999999999999999999999886 99999998877666665555555
Q ss_pred cCC
Q psy5252 81 EDP 83 (285)
Q Consensus 81 ~~~ 83 (285)
|+.
T Consensus 186 ~~~ 188 (471)
T PRK10504 186 PNY 188 (471)
T ss_pred CCc
Confidence 543
No 55
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.58 E-value=2.2e-15 Score=132.71 Aligned_cols=230 Identities=10% Similarity=-0.015 Sum_probs=128.1
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCccccCc--cccccccHHH
Q psy5252 24 DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGR--VTEERTSFGE 101 (285)
Q Consensus 24 ~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~ 101 (285)
+++++.+|......++|..+++++++.+.+. + |++.|++.+++.++..++.++..+|++++...++ .+++++...+
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLK 214 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-chHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHH
Confidence 4567788999999999999999999999874 4 9999998888877666555444444333211111 0111111234
Q ss_pred HHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252 102 DIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS 170 (285)
Q Consensus 102 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~ 170 (285)
..+..+|+|.+++... ...+.+.+....+ .+.+......+....+. .++..++.++.|+++||+++|
T Consensus 215 ~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~g~l~dr~g~~ 292 (420)
T PRK09528 215 DALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF-ATPEQGTRVFGYLNSFQ-VFLEALIMFFAPFIINRIGAK 292 (420)
T ss_pred HHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcc
Confidence 4556778887654111 1112233322211 11111111222222222 244456678999999999998
Q ss_pred hcccceeee--e---ecccc-cc--ccc-cccccccccC-CcchhhhhccccCCcchh------------hhccccchhh
Q psy5252 171 LQLGASTLV--A---NAMLP-SS--LAP-SLPFSSSNST-SLPLVSSLDETAHRSDEF------------LAHKSDEFLA 228 (285)
Q Consensus 171 ~~~~~~~~~--~---~~~~~-~~--~~~-~~~~~~~~~~-~~~~~~~~~~~~p~~~r~------------l~~~~~p~~~ 228 (285)
+......+. + ..... +. +.. ..+....... .......+.|..|++.|. ++..++|.+.
T Consensus 293 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~ 372 (420)
T PRK09528 293 NALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLA 372 (420)
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHH
Confidence 765432211 0 01111 11 111 1111111111 122235567778888761 4457999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 229 HKSDEFLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 229 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
|++.|..||+..|...+++.++..++...
T Consensus 373 G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 373 GNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877776666554443
No 56
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.58 E-value=1.2e-15 Score=136.48 Aligned_cols=247 Identities=15% Similarity=0.081 Sum_probs=153.4
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+...|+-++++.+.+|+|+...++++.+...++..++||.++|.+....| -.+.|.+.++..++.... ....+
T Consensus 113 ~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~~f~inalsfl~~i~~-l~~~~ 190 (524)
T PF05977_consen 113 LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAAAFLINALSFLISILA-LLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHcc
Confidence 5788889999999999999999999999999999999999999999999999886 888998887765554433 33333
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH---------HHHH--HHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL---------NLNW--SIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
.+.+++ +..++.-.++.++.++...++|.+..... ...| .|.+.....+.++...|...+.. .
T Consensus 191 ~~~~~~-~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~-----g 264 (524)
T PF05977_consen 191 PPPPPS-SLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAF-----G 264 (524)
T ss_pred cccccc-ccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHH-----H
Confidence 322211 11112223456677887777776543111 1111 12222222333433444433322 3
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceeee-----eecccccc--c-ccccccc-cc-ccCCcchhhhhccccCCcchh--
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLPSS--L-APSLPFS-SS-NSTSLPLVSSLDETAHRSDEF-- 218 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~~~--~-~~~~~~~-~~-~~~~~~~~~~~~~~~p~~~r~-- 218 (285)
+|.++|.++.+++.+++++++......+. +.+.+... + ...+++. .+ ...+.+.++.+++.+|+++|.
T Consensus 265 vGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv 344 (524)
T PF05977_consen 265 VGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRV 344 (524)
T ss_pred HHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHH
Confidence 66676666777777666655443332211 11112111 1 1111111 11 223344567888999999972
Q ss_pred ---------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 219 ---------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 219 ---------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.+..+|..+.|.+.|+.|.+.++.+.++..+++.++..
T Consensus 345 ~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 345 FSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 33489999999999999999998877776666665544
No 57
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.56 E-value=1.2e-14 Score=127.43 Aligned_cols=237 Identities=13% Similarity=-0.042 Sum_probs=139.8
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh-----hccC------------CchHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF-----SVMG------------AWPWSLRV 64 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~-----~~~g------------~wr~~f~i 64 (285)
.|++ +..++.....+++|+|+||||+++|+.....++|..+++++...+. ..++ +||..+++
T Consensus 138 ~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~ 216 (462)
T PRK15034 138 CGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWI 216 (462)
T ss_pred HHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHH
Confidence 5776 6688999999999999999999999998777778777766665543 2121 27888888
Q ss_pred hhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcC
Q psy5252 65 TPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVL 133 (285)
Q Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 133 (285)
..++.++..++.+++.+++++. +.+ .++.+..+|+|..|++. .+..|.|.+... ..+
T Consensus 217 ~~~~~iv~~i~~~~~~~~~~~~---------~~~-~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~--~~~ 284 (462)
T PRK15034 217 WVPLLAIATIAAWSGMNDIASS---------RAS-IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT--QFP 284 (462)
T ss_pred HHHHHHHHHHHHHHhCCCcccc---------ccC-HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HcC
Confidence 8887777776666665543321 111 23455678888776511 112234443322 221
Q ss_pred CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee---ee----ccccc----c--c-ccc--cccccc
Q psy5252 134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV---AN----AMLPS----S--L-APS--LPFSSS 197 (285)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~---~~----~~~~~----~--~-~~~--~~~~~~ 197 (285)
. .+... ...+.. +...+..+++|+++||+|+++.....+.. .. ...+. . . ... .++...
T Consensus 285 ~--~~~l~--~~~l~~-l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~ 359 (462)
T PRK15034 285 D--VNILR--LAFFGP-FIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTA 359 (462)
T ss_pred h--HHHHH--HHHHHH-HHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 1 11111 112222 33445578999999999999766553311 10 11221 1 1 111 111222
Q ss_pred ccCCcchhhhhccccCC------c-------c-------h------------hhhccccchhhhhhhhhhh-hHHHHHHH
Q psy5252 198 NSTSLPLVSSLDETAHR------S-------D-------E------------FLAHKSDEFLAHKSDEFLA-LQYALFIT 244 (285)
Q Consensus 198 ~~~~~~~~~~~~~~~p~------~-------~-------r------------~l~~~~~p~~~G~~~~~~~-~~~~~~~~ 244 (285)
+..++.++-++.+.+|+ + + + .+|+.+-|.+.|...+..| +..+|+..
T Consensus 360 G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~ 439 (462)
T PRK15034 360 GLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVF 439 (462)
T ss_pred cccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHH
Confidence 44556666677777763 1 0 1 1556788888888888766 78888877
Q ss_pred HHHHHHHHHHHH
Q psy5252 245 SFIEVLGGIFFL 256 (285)
Q Consensus 245 ~~~~~~~~~~~~ 256 (285)
.+.++++.++.+
T Consensus 440 ~~~~~~~~~~~w 451 (462)
T PRK15034 440 LIFYIVCVLLTW 451 (462)
T ss_pred HHHHHHHHHHHH
Confidence 666666555433
No 58
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.55 E-value=1.9e-14 Score=126.43 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=85.5
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+....++.|++|+++|++++++++.+.++|..+||.+++.+.++.+ ||+.|++.++..++..++..+.+
T Consensus 113 l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~l 191 (413)
T PRK15403 113 IQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAFVGLLLAM 191 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 36788877677778899999999999999999999999999999999999998876 99999999988877766656667
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHH
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETW 114 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (285)
||+++++.++ .+..+..+.++..++||.++.
T Consensus 192 p~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ 222 (413)
T PRK15403 192 PETVKRGAVP---FSAKSVLRDFRNVFRNRLFLT 222 (413)
T ss_pred CCCccccCCC---CChHHHHHHHHHHHcCHHHHH
Confidence 7764322111 111223456777888988875
No 59
>PRK10054 putative transporter; Provisional
Probab=99.55 E-value=1.3e-14 Score=126.70 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=138.2
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
|.+.+...+...++.+|.+|+++|++++|+.+...++|.+++|.+++++.. .+ ||..|++.+++.++..++..+.++|
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 107 NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455677788899999999999999999999999999999999999886 55 9999998888777765555555555
Q ss_pred CcCccccCccccccccHHHHHHHHhhhhhhHHHHHH--H---------HHHHHHHHHHHhcCCCCcchhHHHHHHHhhhc
Q psy5252 83 PERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN--L---------NWSIVADMTLYVVLPLRRSTAEAFQILISHAF 151 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (285)
+++++++++ + + ....+..+++|.+++.... . .+.+.+.... .+.+......+. .......
T Consensus 185 ~~~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~-~~~~~~~ 255 (395)
T PRK10054 185 SEKAIATET----G-S-VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV--ADSDFAEKVVAV-VLPVNAA 255 (395)
T ss_pred cccccccch----h-h-hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh--cccchHHHHHHH-HHHhhhh
Confidence 433221111 1 1 1223556778877652211 0 1122221111 111111112222 2222333
Q ss_pred cccchhhhhHHHhHHhhhhhcccceee--ee---eccc--ccc--c-cccccccccccCCcc-hhhhhccccCCcch---
Q psy5252 152 GDAGSPYLIGLLSEMFRHSLQLGASTL--VA---NAML--PSS--L-APSLPFSSSNSTSLP-LVSSLDETAHRSDE--- 217 (285)
Q Consensus 152 g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~---~~~~--~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r--- 217 (285)
..+...+..|++.||.++|+....... .+ .+.. .+. + .....+..+.....| ..+.+.+..|++.|
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~ 335 (395)
T PRK10054 256 MVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASY 335 (395)
T ss_pred heeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceeh
Confidence 444445678899999988865443221 11 1111 111 1 112222222233233 35567788888886
Q ss_pred -------hhhccccchhhhhhhhhhhhHHHHHHHHH
Q psy5252 218 -------FLAHKSDEFLAHKSDEFLALQYALFITSF 246 (285)
Q Consensus 218 -------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~ 246 (285)
++|..+||.++|.+.|+.|.+..+++.+.
T Consensus 336 ~~~~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~ 371 (395)
T PRK10054 336 FSAQSLGWLGAAINPLVSGVILTTLPPWSLFVILAL 371 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHH
Confidence 15678999999999999998877765443
No 60
>KOG3764|consensus
Probab=99.55 E-value=3e-15 Score=124.92 Aligned_cols=246 Identities=17% Similarity=0.182 Sum_probs=157.9
Q ss_pred CcccccccccchhHHHHhhcccCCc-hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDL-RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~-rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
+||+|.+...++..++++|.||+|+ |++++|+.-.+..+|..+||+++|.+.+..| .+.+|.+.+++.++...+-++.
T Consensus 168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHhe
Confidence 6899999999999999999999975 7999999999999999999999999999886 9999999999998888666655
Q ss_pred ccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-------HHHHH-HH--HHHHHHhcCCC-CcchhHHHHHHHh
Q psy5252 80 MEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-------NLNWS-IV--ADMTLYVVLPL-RRSTAEAFQILIS 148 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (285)
++..+.++.+. ++ ...++.++++|..+.... ...+. |. .+..+....++ +.|. .++.
T Consensus 247 i~p~~~~~~~~---~~----~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~-----~fLp 314 (464)
T KOG3764|consen 247 IEPTEMDPDST---EQ----GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGL-----AFLP 314 (464)
T ss_pred eCccccCcccc---cc----CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceee-----eecc
Confidence 55433322111 11 123455777777655211 11111 11 11111111222 3333 2344
Q ss_pred hhccccchhhhhHHHhHHhhhhhccccee--eeeecc---cc--cc----c----cccccccccccCCcchhhhhccccC
Q psy5252 149 HAFGDAGSPYLIGLLSEMFRHSLQLGAST--LVANAM---LP--SS----L----APSLPFSSSNSTSLPLVSSLDETAH 213 (285)
Q Consensus 149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~--~~~~~~---~~--~~----~----~~~~~~~~~~~~~~~~~~~~~~~~p 213 (285)
..+...+|..+.|.++||+++.++...+. +..++. .+ .. + .+++..........|...+..|..+
T Consensus 315 ~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh 394 (464)
T KOG3764|consen 315 ASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRH 394 (464)
T ss_pred cccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhh
Confidence 45778888899999999999665443311 111111 11 00 1 1111111112333444444444444
Q ss_pred Cc---ch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252 214 RS---DE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGS 259 (285)
Q Consensus 214 ~~---~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
.+ .. .+|.++||.++|.+.+..|+.+.....++..++.+-++.+.+
T Consensus 395 ~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 395 VSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred ccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 11 277899999999999999999988888888777776666543
No 61
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.55 E-value=7.4e-15 Score=127.68 Aligned_cols=234 Identities=13% Similarity=0.041 Sum_probs=132.2
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...|...+.+.++.++++|++++++++.+.++|..+|+.+++.+.+... |... +..+........+. +.
T Consensus 103 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~--~~ 178 (381)
T PRK03633 103 VAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLP-WVTGLVLAAILPLL--FT 178 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHH-HHHHHHHHHHHHHH--Hh
Confidence 36788888888888888899999999999999999999999999999999987542 3333 33332222222122 22
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----H------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----L------NLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
+.+++++ ++ +++. +.+..+++|.++... . ...+.|.+.. ..+.++...+...+ ..
T Consensus 179 ~~~~~~~-~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~s~~~~g~~~~-----~~ 244 (381)
T PRK03633 179 RILNQQA-EN---HDST----SIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLN-HQGMSDASIGFWMA-----LL 244 (381)
T ss_pred cccCCCC-CC---CCCC----CHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHH-----HH
Confidence 2221111 11 0111 123345666554311 0 1122232221 12332222222222 22
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeee--eec--ccccc--ccccccccc-cccCCcchhhhhccccCCcch-----
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA--MLPSS--LAPSLPFSS-SNSTSLPLVSSLDETAHRSDE----- 217 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~--~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r----- 217 (285)
.++.+++....|++.||+++++........ ++. ..... +.....+.. .....+...+.+.|..|++.+
T Consensus 245 ~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 324 (381)
T PRK03633 245 VSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQ 324 (381)
T ss_pred HHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHH
Confidence 355666788999999999998765432111 100 01111 111111111 122333345667788887664
Q ss_pred ------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252 218 ------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG 252 (285)
Q Consensus 218 ------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~ 252 (285)
.+|..++|.+.|++.|+.++++.|.+.+.+.++..
T Consensus 325 ~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 325 ALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 16778999999999999999988887666655443
No 62
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.54 E-value=8.9e-15 Score=135.30 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=69.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------------CchHHHHHhhHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------------AWPWSLRVTPVL 68 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------------~wr~~f~i~~~~ 68 (285)
++|++.++..|...++++|++|+++|++.++++.....+|.++++.++..+...++ +||+.|++.+++
T Consensus 264 l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp 343 (742)
T TIGR01299 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFP 343 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999998877765321 489998887776
Q ss_pred HHHHHHHHHHhccCCcC
Q psy5252 69 GACAVLLILFFMEDPER 85 (285)
Q Consensus 69 ~~~~~~l~~~~~~~~~~ 85 (285)
.++. ++..+++||+|+
T Consensus 344 ~ll~-ll~~~~lPESPr 359 (742)
T TIGR01299 344 CVFA-IGALTFMPESPR 359 (742)
T ss_pred HHHH-HHHHHHcCCCHH
Confidence 6554 456677888764
No 63
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.53 E-value=1.6e-14 Score=123.38 Aligned_cols=230 Identities=19% Similarity=0.206 Sum_probs=148.1
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+...+...+++.|++|+|+|++.+++.+...++|..+++.+++.+.+..+ ||+.|++.++..++..+...+. +
T Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~ 174 (352)
T cd06174 97 LGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFL-L 174 (352)
T ss_pred HHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHH-H
Confidence 5888899999999999999999999999999999999999999999999999885 9999999888877766554333 2
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHR-ETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLI 160 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 160 (285)
+..+......-. .........+.+.+.....+.+..+.+.... ...++..++.++.
T Consensus 175 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~ 231 (352)
T cd06174 175 ------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLS-----LFGLGGILGALLG 231 (352)
T ss_pred ------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 000000000000 0001112223333322222333333333322 2336667778899
Q ss_pred HHHhHHhhhhh-cccceeee--ee---cc-cccc--c-ccccccccc-ccCCcchhhhhccccCCcchh-----------
Q psy5252 161 GLLSEMFRHSL-QLGASTLV--AN---AM-LPSS--L-APSLPFSSS-NSTSLPLVSSLDETAHRSDEF----------- 218 (285)
Q Consensus 161 G~l~d~~~~~~-~~~~~~~~--~~---~~-~~~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~----------- 218 (285)
+++.||+++|+ ........ +. .. ..+. . ....+...+ ........+.+.|..|+++|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (352)
T cd06174 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS 311 (352)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999987 44332111 00 01 1111 1 111111111 334455678889999988872
Q ss_pred hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 219 LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 219 l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
++..++|.+.|.+.|..+++..+...+++.+++.+...
T Consensus 312 ~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 312 LGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 56689999999999989999999888887777666543
No 64
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.53 E-value=1.3e-14 Score=126.15 Aligned_cols=236 Identities=8% Similarity=-0.117 Sum_probs=135.3
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|.+.+...|...++..++ ++||++++|......++|.+++|++++.+.+++| ||..|.+......+ .++.....|
T Consensus 104 ~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f~~~~~~~~~-~~~~~~~~~ 179 (382)
T TIGR00902 104 FALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNILAILTAGLAF-MLIGFLIKP 179 (382)
T ss_pred HHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHH-HHHHHHcCC
Confidence 4566677788888887654 5789999999999999999999999999999986 99999887655332 323333333
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
+++++++++++ ++ +..+..+..+|+|.++.... ...+.+.+. ...+.++...+...+ ...
T Consensus 180 ~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l-~~~g~s~~~~g~l~~-----~~~ 250 (382)
T TIGR00902 180 TIPPKDAIPED--ES-QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYW-QAAGISASATGLLWG-----IGV 250 (382)
T ss_pred CCCCCcccccc--cc-ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHhHHHHHHH-----HHH
Confidence 32222111111 11 11234566788888765221 222333332 223444444443333 234
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceeeee-----ecccccc---cc-ccccccccc-cCCcchhhhhccccCCcchh--
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTLVA-----NAMLPSS---LA-PSLPFSSSN-STSLPLVSSLDETAHRSDEF-- 218 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~-----~~~~~~~---~~-~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~-- 218 (285)
++.+++..+.+++.||++.++.+....+.. .....+. +. .-.+-.... ........++.+. |+++|.
T Consensus 251 ~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~ 329 (382)
T TIGR00902 251 LAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKL 329 (382)
T ss_pred HHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHH
Confidence 556666778889999998887554322111 0111111 11 111111111 1112233455666 776651
Q ss_pred ----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252 219 ----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG 252 (285)
Q Consensus 219 ----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~ 252 (285)
++..++|.++|.+.|+.|. ..+...+++.+++.
T Consensus 330 q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 330 QALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 4457899999999999986 55665665555443
No 65
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.53 E-value=6.9e-15 Score=132.15 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=72.0
Q ss_pred CcccccccccchhHHHHhhcc-cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 1 MVGIGEASYSTIAPTIISDLF-VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
++|+|.+...|....++.+++ |+++|++++|++....++|..+||.+++.+.++++ ||+.|++...+.++..++..+.
T Consensus 103 l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-wr~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 103 LLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-WGSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHh
Confidence 478888988898888888876 67899999999999999999999999999999886 9999999887777776666677
Q ss_pred ccCCc
Q psy5252 80 MEDPE 84 (285)
Q Consensus 80 ~~~~~ 84 (285)
+|+++
T Consensus 182 l~~~~ 186 (495)
T PRK14995 182 VPRQA 186 (495)
T ss_pred CCCCC
Confidence 77654
No 66
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.53 E-value=5.5e-14 Score=138.35 Aligned_cols=245 Identities=13% Similarity=0.005 Sum_probs=138.4
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc--------cCCchHHHHHhhHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV--------MGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~--------~g~wr~~f~i~~~~~~~~ 72 (285)
++|++.+...++..++++|++|+++|++++|+.+.+.++|.++|+++++++.+. +++|++.+.+..+...+.
T Consensus 112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (1146)
T PRK08633 112 LLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVL 191 (1146)
T ss_pred HHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999999999999999876 333555555444444444
Q ss_pred HHHHHHhccCCcCccccC--cc-ccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCC-Cc
Q psy5252 73 VLLILFFMEDPERGEAEG--RV-TEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPL-RR 137 (285)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~ 137 (285)
.++..+.+|+.++...+. +. ........+.++.+++++.++.... ...+.+.+....++.+.. ..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 271 (1146)
T PRK08633 192 GLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQV 271 (1146)
T ss_pred HHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHH
Confidence 444445566654332221 10 1111223455677777776654211 112223333333344433 22
Q ss_pred chhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee-----eccc-ccc--c-ccccccccc-ccCCcchhhh
Q psy5252 138 STAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA-----NAML-PSS--L-APSLPFSSS-NSTSLPLVSS 207 (285)
Q Consensus 138 ~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~-----~~~~-~~~--~-~~~~~~~~~-~~~~~~~~~~ 207 (285)
+.. .....++.+++.++.|+++||+++++......+.. .+.. ... + ...+++..+ .....+..++
T Consensus 272 g~~-----~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 346 (1146)
T PRK08633 272 QYL-----LAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNAL 346 (1146)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 222 23334666777889999999988765443321111 1111 111 1 111112222 2334556788
Q ss_pred hccccCCcchh-----------hhccccchhhhhhhhh-hhhHHHHHHHHHHHHH
Q psy5252 208 LDETAHRSDEF-----------LAHKSDEFLAHKSDEF-LALQYALFITSFIEVL 250 (285)
Q Consensus 208 ~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~-~~~~~~~~~~~~~~~~ 250 (285)
+.+.+|++.|. ++..+++.+++.+... .++...+++.+.+.++
T Consensus 347 ~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 347 IQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 88999999872 3334455555544331 2334445444443333
No 67
>PRK10133 L-fucose transporter; Provisional
Probab=99.53 E-value=3.7e-14 Score=125.39 Aligned_cols=238 Identities=11% Similarity=0.019 Sum_probs=136.2
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-c-----------------c-------
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-V-----------------M------- 55 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-~-----------------~------- 55 (285)
++|+|.+...+..++++.|+.|+++|.+.+++.+....+|..+++.+++.+.. . .
T Consensus 126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~ 205 (438)
T PRK10133 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLV 205 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHH
Confidence 36899999999999999998877777778999999999999999999876541 0 0
Q ss_pred CCchHHHHHhh-HHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHH
Q psy5252 56 GAWPWSLRVTP-VLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSI 123 (285)
Q Consensus 56 g~wr~~f~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 123 (285)
.+||++|+... +..++..++.....||.+.+ +++ ++++.+..+..+.++++|.++... ....|.+
T Consensus 206 ~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~--~~~-~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (438)
T PRK10133 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--NHS-DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLI 282 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--ccc-cccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13677776443 33333322222233332111 111 111223334556677888765411 1122333
Q ss_pred HHHH-HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee-----ecc-ccc-c-ccccccc
Q psy5252 124 VADM-TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA-----NAM-LPS-S-LAPSLPF 194 (285)
Q Consensus 124 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~-----~~~-~~~-~-~~~~~~~ 194 (285)
.+.. ..++.++...+.... ...++..+|.+++|++.||+++++......... ... .+. . +.....+
T Consensus 283 ~~l~~~~~g~s~~~ag~~~~-----~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 357 (438)
T PRK10133 283 RYAVEEIPGMTAGFAANYLT-----GTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLC 357 (438)
T ss_pred HHHhhhcCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3321 123444444333333 334777888999999999999987665432110 001 111 1 1111112
Q ss_pred cccccC-CcchhhhhccccCCcch---------hhhccccchhhhhhhhhhh-hHHHHHHHHH
Q psy5252 195 SSSNST-SLPLVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFLA-LQYALFITSF 246 (285)
Q Consensus 195 ~~~~~~-~~~~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~~-~~~~~~~~~~ 246 (285)
..+.+. .++.++...|..|++.. .+++.++|.+.|.+.|+.| .+.++++..+
T Consensus 358 glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~ 420 (438)
T PRK10133 358 SAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_pred HHHHHHHHHHHHHHHHcccchhhccchhHHhHHhccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 222233 33345666676666432 2566899999999999987 7887765433
No 68
>TIGR00898 2A0119 cation transport protein.
Probab=99.52 E-value=2.1e-14 Score=129.34 Aligned_cols=247 Identities=15% Similarity=0.075 Sum_probs=143.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+. +||+.|++.+++.++..+.. +++
T Consensus 189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~-~~~ 263 (505)
T TIGR00898 189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLS-WFV 263 (505)
T ss_pred HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 4688999999999999999999999999999999999999999998886664 39999999998877766554 677
Q ss_pred cCCcCccccCcc--------------------c-------cc---cccHHHHHHHHhhhhhhHHHH--HHHHHHHH---H
Q psy5252 81 EDPERGEAEGRV--------------------T-------EE---RTSFGEDIRALCKNHRETWIF--LNLNWSIV---A 125 (285)
Q Consensus 81 ~~~~~~~~~~~~--------------------~-------~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~ 125 (285)
||+++....++. + ++ +...+..++.++++|.++... ....|... +
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 876542100000 0 00 000012445666666654421 11222211 1
Q ss_pred HHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-------eeccccc--cc--cccccc
Q psy5252 126 DMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAMLPS--SL--APSLPF 194 (285)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~~~--~~--~~~~~~ 194 (285)
.......+....+... . .....+..+.+.++.+++.||++||+......+. ..+.... .+ ...++.
T Consensus 344 ~~~~~~~~~~~~~~~~--~-~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 420 (505)
T TIGR00898 344 YGLVLDLGNLGGNIYL--D-LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLG 420 (505)
T ss_pred HHHhccccccCCChHH--H-HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1111112211111111 1 1122244456677899999999998765542211 1111111 11 111111
Q ss_pred cc-cccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 195 SS-SNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
.. ........+.+.+|.+|++.|. +|..++|.+.+ + +..+....+.+.+.+.++++++.++
T Consensus 421 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
T TIGR00898 421 KFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF 493 (505)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 11 1222334567788999999982 56688998888 3 4445566666666666666555443
No 69
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.52 E-value=3.5e-15 Score=133.65 Aligned_cols=83 Identities=14% Similarity=0.418 Sum_probs=73.7
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...+++.|++|+|+|+++++++..+..+|..+++.+++++.++++ ||+.|++.+.+.++..++..+..
T Consensus 99 ~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 99 IQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred HHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehhhhhhHHHHHHHHHHHHHc
Confidence 36888899999999999999999999999999999999999999999999999886 99999998888777776666667
Q ss_pred cCCc
Q psy5252 81 EDPE 84 (285)
Q Consensus 81 ~~~~ 84 (285)
||++
T Consensus 178 ~~~~ 181 (485)
T TIGR00711 178 PRDK 181 (485)
T ss_pred CCcc
Confidence 6644
No 70
>TIGR00895 2A0115 benzoate transport.
Probab=99.51 E-value=1.1e-14 Score=126.78 Aligned_cols=83 Identities=19% Similarity=0.406 Sum_probs=72.5
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+.|++.+...+...++++|++|+++|++++++.+.+..+|..+++.+++.+.+..+ ||+.|++.++...+..++...++
T Consensus 114 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred HHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ceeehhhhhhHHHHHHHHHHHhC
Confidence 36888899999999999999999999999999999999999999999999998886 99999988766666666666677
Q ss_pred cCCc
Q psy5252 81 EDPE 84 (285)
Q Consensus 81 ~~~~ 84 (285)
||++
T Consensus 193 ~~~~ 196 (398)
T TIGR00895 193 PESI 196 (398)
T ss_pred CCCC
Confidence 7654
No 71
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.51 E-value=8.1e-14 Score=128.10 Aligned_cols=166 Identities=13% Similarity=0.144 Sum_probs=117.3
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC---------------------Cch
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG---------------------AWP 59 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g---------------------~wr 59 (285)
++|+|.+..++.+.+++.|++|+++|++++++++.+..+|.++|+++++++.+.+. .||
T Consensus 181 l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 181 LRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred HHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 47999999999999999999999999999999999999999999999999887542 266
Q ss_pred HHHHHhhHHHHHHHHHHHHhccCCcCccc--c----Ccc--c--cc---------cccHHHHHHHHhhhhhhHH------
Q psy5252 60 WSLRVTPVLGACAVLLILFFMEDPERGEA--E----GRV--T--EE---------RTSFGEDIRALCKNHRETW------ 114 (285)
Q Consensus 60 ~~f~i~~~~~~~~~~l~~~~~~~~~~~~~--~----~~~--~--~~---------~~~~~~~~~~~~~~~~~~~------ 114 (285)
..|++.+++.++..+.++++.++.++... + +++ + ++ .+++...++.++++|.++.
T Consensus 261 l~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~ 340 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQV 340 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77888888887777655444443332111 0 000 0 00 0123345677888888765
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252 115 -----IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS 170 (285)
Q Consensus 115 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~ 170 (285)
...+..|.|.+...+++.++.+.+...+... +.+.++|.+++|+++||++.+
T Consensus 341 ~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~----i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 341 IDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVN----LPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhh----hhHHHHHHhhhhheeeeeccc
Confidence 2234567777777777777766665555332 234566778999999999854
No 72
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.50 E-value=1.2e-14 Score=124.40 Aligned_cols=169 Identities=19% Similarity=0.305 Sum_probs=109.5
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...+++.|++|+|+|++++++.+.+.++|..+++.+++.+.+.++ ||+.|++.+++.++..++...+.
T Consensus 94 l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 94 LLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccccchhhhhhhhHhhhh
Confidence 36888899999999999999999999999999999999999999999999998775 99999999999888876554555
Q ss_pred cCCcCccccCcc-cc---ccccHHHHHHHHhhhhhhH-HHH----------HHHHHHHHHHHHHHhcC-CCCcchhHHHH
Q psy5252 81 EDPERGEAEGRV-TE---ERTSFGEDIRALCKNHRET-WIF----------LNLNWSIVADMTLYVVL-PLRRSTAEAFQ 144 (285)
Q Consensus 81 ~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 144 (285)
+++++++.++++ ++ ++++..+.++.++++|.+| ... ....|.+.+....++.+ ..+.+...+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 250 (352)
T PF07690_consen 173 PEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFS-- 250 (352)
T ss_dssp ---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHH--
T ss_pred hhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHH--
Confidence 554443322221 11 2222333456666777553 111 11222333323334444 122222222
Q ss_pred HHHhhhccccchhhhhHHHhHHhhhhhcccc
Q psy5252 145 ILISHAFGDAGSPYLIGLLSEMFRHSLQLGA 175 (285)
Q Consensus 145 ~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~ 175 (285)
...+...++.++.|+++||+++++....
T Consensus 251 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (352)
T PF07690_consen 251 ---IFGIVGIIGSLLAGRLSDRFGRRRRLLI 278 (352)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 2224445557799999999988654443
No 73
>PRK11043 putative transporter; Provisional
Probab=99.48 E-value=1e-13 Score=121.35 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=103.6
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+.++ ||+.|++.+++.++..++..+ .+
T Consensus 104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~ 181 (401)
T PRK11043 104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITLLLILPTLR-LK 181 (401)
T ss_pred HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHH-cC
Confidence 5677777777788899999999999999999999999999999999999999886 999999988887776655443 44
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
|++++++ + ++.+++++..+++|.++... ....+.|.+. ..++.++.+.+.. .....
T Consensus 182 ~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~-----~~~~~ 248 (401)
T PRK11043 182 PSKKARK---Q----SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL-EQMGYSPADIGLS-----YVPQT 248 (401)
T ss_pred CCCCccc---c----chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH-HHcCCCHHHHHHH-----HHHHH
Confidence 3322111 0 11234566677777654311 1122233322 2233333333322 22223
Q ss_pred ccccchhhhhHHHhHHhhhhhccc
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLG 174 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~ 174 (285)
++..+|..+.+++.||+++++..+
T Consensus 249 ~~~~~g~~~~~~l~~r~~~~~~~~ 272 (401)
T PRK11043 249 IAFLVGGYGCRAALQKWGGEQLLP 272 (401)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHH
Confidence 555666778889999998876543
No 74
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.48 E-value=1.6e-13 Score=121.35 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=131.3
Q ss_pred ccccccccchhHHHHhhcc-cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-------ccCCchHHHHHhhHHHHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLF-VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-------VMGAWPWSLRVTPVLGACAVL 74 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-------~~g~wr~~f~i~~~~~~~~~~ 74 (285)
+++.+...+...++.+|.. +++||++..++.+.+.++|..+++.+.+.+.. .. +||+.+.+.+++.++..+
T Consensus 110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKF-GWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-cHHHHHHHHHHHHHHHHH
Confidence 3444455566677888887 46899999999999999998888777666553 23 499999999988887776
Q ss_pred HHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--HHHHHHHHH---HHHHhcCCC-CcchhHHHHHHHh
Q psy5252 75 LILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--NLNWSIVAD---MTLYVVLPL-RRSTAEAFQILIS 148 (285)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~ 148 (285)
+..+..||++++..++ ++++.+.++.++.++++|.++.... ...+..... ...+..... ......+... ..
T Consensus 189 ~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 265 (437)
T TIGR00792 189 ICFFGTKERYSEIPKN--IEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMG-SI 265 (437)
T ss_pred HHHcCCEecCCCCCcc--cccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHH-HH
Confidence 7666777754321111 1123346677888888988765322 111111110 001111100 0011122222 22
Q ss_pred hhccccchhhhhHHHhHHhhhhhcccceeee--ee---cc-cc-cc--cccc-cccccc-ccCCcchhhhhccccCCc--
Q psy5252 149 HAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AM-LP-SS--LAPS-LPFSSS-NSTSLPLVSSLDETAHRS-- 215 (285)
Q Consensus 149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~-~~-~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~-- 215 (285)
..++.+++.++.++++||+++|+........ ++ .. .+ .. +... .+...+ ........++++|..+.+
T Consensus 266 ~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 345 (437)
T TIGR00792 266 AIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEW 345 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 2466667788999999999988765442211 10 01 11 11 1111 111111 223344567777776532
Q ss_pred -----ch-----------hhhccccchhhhhhhhhhhh
Q psy5252 216 -----DE-----------FLAHKSDEFLAHKSDEFLAL 237 (285)
Q Consensus 216 -----~r-----------~l~~~~~p~~~G~~~~~~~~ 237 (285)
.+ .++..+++.+.|.+.|..|+
T Consensus 346 ~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 346 KTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 15668999999999887665
No 75
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.47 E-value=5.8e-14 Score=122.10 Aligned_cols=234 Identities=8% Similarity=-0.072 Sum_probs=131.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...|...+++.++ +++|+++++......++|.++||++++++.++++ ||..|++.++..++.. +..+..|
T Consensus 104 ~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~~~~~~~~-~~~~~~~ 179 (382)
T PRK11128 104 FNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILTAGVASML-LGQLLRP 179 (382)
T ss_pred HHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHH-HHHHccC
Confidence 4667778888888888877 4578889999999999999999999999999986 9999988876554443 3333444
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
|++++.++++ ++++..+.++.++|+|.++.... .....+.+. .+.+.++.+.+...+ ...
T Consensus 180 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~-----~~~ 250 (382)
T PRK11128 180 TIMPQGESRQ---QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-QAAGYSASTIGYLWS-----LGV 250 (382)
T ss_pred CCCCcccccc---ccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-HHCCCCHhHHHHHHH-----HHH
Confidence 4322111111 11111345677888888764221 111112221 123333333333333 223
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceeee--ee---cccccc---ccc-cccccccccCC-cchhhhhccccCCcch---
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLPSS---LAP-SLPFSSSNSTS-LPLVSSLDETAHRSDE--- 217 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~~~---~~~-~~~~~~~~~~~-~~~~~~~~~~~p~~~r--- 217 (285)
++.++...+.|++.||+++++.+...... +. ...... +.. ..+...+.+.. ......+.+..+.+..
T Consensus 251 ~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (382)
T PRK11128 251 VAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQ 330 (382)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHH
Confidence 45566667889999999988765442211 11 111111 111 11111111212 2223444554333322
Q ss_pred ----h----hhccccchhhhhhhhhhhhHHHHHHHHHHHH
Q psy5252 218 ----F----LAHKSDEFLAHKSDEFLALQYALFITSFIEV 249 (285)
Q Consensus 218 ----~----l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~ 249 (285)
. ++..+||.++|.+.|+.|. ..++..+++.+
T Consensus 331 ~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~ 369 (382)
T PRK11128 331 ALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVAL 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHH
Confidence 1 2447889999999999886 34554444433
No 76
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.47 E-value=2.6e-13 Score=116.83 Aligned_cols=164 Identities=12% Similarity=0.072 Sum_probs=105.2
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCC-------chHHHHHhhHHHHHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA-------WPWSLRVTPVLGACAVLL 75 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~-------wr~~f~i~~~~~~~~~~l 75 (285)
+++.+...++..+++.|++|+|||+++.++...+.++|.++++.+++.+....++ ||..|++.++..++..+.
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~ 173 (356)
T TIGR00901 94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLV 173 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence 3445556678889999999999999999999999999999999999999887632 999999999887776655
Q ss_pred HHHhccCCcCccccCccccccccHHHHHHHHhhhhh---hHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhH
Q psy5252 76 ILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHR---ETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAE 141 (285)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 141 (285)
.++..||+++++.++ ++++++.++.++.++++|. ++.... ...+.+.+... .+.++++.+..
T Consensus 174 ~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~- 249 (356)
T TIGR00901 174 TLFLAKEPQEDASVP--KPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALV- 249 (356)
T ss_pred HHHhccCCCcccccc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH-
Confidence 444566654321111 1112234456677777764 332111 11222322221 33333332222
Q ss_pred HHHHHHhhhccccchhhhhHHHhHHhhhhhcc
Q psy5252 142 AFQILISHAFGDAGSPYLIGLLSEMFRHSLQL 173 (285)
Q Consensus 142 ~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~ 173 (285)
......++.+++.+++|++.||+++|+..
T Consensus 250 ---~~~~~~~~~~~g~~~~g~l~~r~g~~~~l 278 (356)
T TIGR00901 250 ---AKINGLLGAILGGLIGGIIMQPLNILYAL 278 (356)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 22222345566778999999999988653
No 77
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.47 E-value=3.2e-13 Score=118.43 Aligned_cols=233 Identities=12% Similarity=0.036 Sum_probs=138.0
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc--------------------------c
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV--------------------------M 55 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~--------------------------~ 55 (285)
.|+|.+...+..++++.+..|+++|++.+++.+...++|..+++.+++.+... .
T Consensus 104 ~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (410)
T TIGR00885 104 LTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLA 183 (410)
T ss_pred HHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHH
Confidence 58888999999999999999999999999999999999999999999887532 2
Q ss_pred CCchHHHHHhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH--HHH----HHHHHHHH
Q psy5252 56 GAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN--LNW----SIVADMTL 129 (285)
Q Consensus 56 g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~ 129 (285)
+||++|++.+++.++..++.. +.+.|+.++.++ ++.+..+..+..+|+|.+++.... ... ....+...
T Consensus 184 -~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~ 257 (410)
T TIGR00885 184 -SVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA----KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQ 257 (410)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc----ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999887766554432 333332111111 111233345567777777652110 000 11111112
Q ss_pred HhcC---CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eecc-ccc-c-c----cccccc
Q psy5252 130 YVVL---PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAM-LPS-S-L----APSLPF 194 (285)
Q Consensus 130 ~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~-~~~-~-~----~~~~~~ 194 (285)
+..+ ....+... ........+..+|+++++++.||+++++........ +... ... . + ..+++.
T Consensus 258 y~~~~~~~~~~~~a~--~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~ 335 (410)
T TIGR00885 258 YAVRLIPGMTAGFAA--NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFM 335 (410)
T ss_pred HHhhccCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2211 11111111 111112245567899999999999988765442211 1111 111 1 1 111111
Q ss_pred cccccCCcchhhhhccccCCcch---------hhhccccchhhhhhhhhh------hhHHHHHHHH
Q psy5252 195 SSSNSTSLPLVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFL------ALQYALFITS 245 (285)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~------~~~~~~~~~~ 245 (285)
...++..++...+..+++.+ .+|+++.|.+.|.+.|+. +++.+|++..
T Consensus 336 ---s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~ 398 (410)
T TIGR00885 336 ---SLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL 398 (410)
T ss_pred ---HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence 23334456667777777665 167799999999999964 4777776533
No 78
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.45 E-value=1.7e-13 Score=119.58 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=102.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+....+..|+++++++++++++++.+..++..++|.+++.+.+..+ ||+.|++.++..++..++..++.|
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~ 184 (394)
T PRK11652 106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRACYLFLLLLGAGVTFSMARWMP 184 (394)
T ss_pred HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5677777778888899999999999999999999999999999999999998876 999999988877666655556667
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----HH------HHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----NL------NWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
|+++++.+ +.+.++.++..+++|.++.... .. .+.+.+....++.++.+ .+ .......
T Consensus 185 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~-~~~~~~~ 253 (394)
T PRK11652 185 ETRPADAR------RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMT----VS-ILFILPI 253 (394)
T ss_pred ccCccccc------hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHH----HH-HHHHHHH
Confidence 65432211 1124566777778877653111 00 01111111112222222 22 2222334
Q ss_pred ccccchhhhhHHHhHHhhh
Q psy5252 151 FGDAGSPYLIGLLSEMFRH 169 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~ 169 (285)
++.+++.++.+++.||.++
T Consensus 254 ~~~~~g~~~~~~l~~~~~~ 272 (394)
T PRK11652 254 PAAFFGAWFAGRPNKRFST 272 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666677788888888873
No 79
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.44 E-value=7.8e-13 Score=115.35 Aligned_cols=231 Identities=10% Similarity=-0.079 Sum_probs=133.3
Q ss_pred cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcccc
Q psy5252 10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAE 89 (285)
Q Consensus 10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~ 89 (285)
.+...++..|+.++++++...+....+..+|..+|+...+++.+.++ ||..|++.+++.++..+...+..|+++++ .+
T Consensus 115 d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~~-~~ 192 (390)
T TIGR02718 115 DIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG-QRPAFLLVACVPLASLVCVLWLKDRAVAS-PE 192 (390)
T ss_pred HHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHcCCCCcCc-cc
Confidence 34444566777777777888888888889999999999999999886 99999999988776665554443332211 11
Q ss_pred CccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhh
Q psy5252 90 GRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPY 158 (285)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 158 (285)
+ +++..++++..+|+|.++.... ...+.+.+. .+.+.++++.+.... .......+++..
T Consensus 193 ~-----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~G~s~~~ig~~~~----~~~~~~~~~g~~ 262 (390)
T TIGR02718 193 A-----PLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYL-VDAGWPLEWIGRLGM----AGGAVTVLLGCG 262 (390)
T ss_pred c-----chhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHH-HhcCCCHHHHHHHHh----HHHHHHHHHHHH
Confidence 1 0112234566778776644111 111222222 123444333333322 222345556677
Q ss_pred hhHHHhHHhhhhhcccceeeee---ec---cc-----ccc--cccccccc---ccccCCcchhhhhccccCC-cch----
Q psy5252 159 LIGLLSEMFRHSLQLGASTLVA---NA---ML-----PSS--LAPSLPFS---SSNSTSLPLVSSLDETAHR-SDE---- 217 (285)
Q Consensus 159 ~~G~l~d~~~~~~~~~~~~~~~---~~---~~-----~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~p~-~~r---- 217 (285)
+.|++.||+++++......... .. .. ... ........ ..........+...+..++ +.+
T Consensus 263 ~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 342 (390)
T TIGR02718 263 GGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDV 342 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHH
Confidence 9999999999987655422111 00 00 000 10110000 0122223334454555554 444
Q ss_pred -------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252 218 -------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG 252 (285)
Q Consensus 218 -------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~ 252 (285)
.++..++|.+.|.+.|+.|++..|...+++.+++.
T Consensus 343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 26778999999999999999988887766555543
No 80
>KOG2504|consensus
Probab=99.42 E-value=8.1e-14 Score=124.21 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=157.0
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+.|+|.+..+.....++..|| ++||+.++|+..++..+|..+-|++..++.+.+| ||+.+++.+.+.+-.++.....-
T Consensus 144 i~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 144 IGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG-WRGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred HhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHcC
Confidence 368999999999999999999 5699999999999999999999999999999997 99999999888766665554443
Q ss_pred cCCcCc------------------------cc-cCcc--c-------------cc-cc--cHHHHH----HHHhhhhhhH
Q psy5252 81 EDPERG------------------------EA-EGRV--T-------------EE-RT--SFGEDI----RALCKNHRET 113 (285)
Q Consensus 81 ~~~~~~------------------------~~-~~~~--~-------------~~-~~--~~~~~~----~~~~~~~~~~ 113 (285)
|.++.. .. +.+. . ++ .. ..+... ..+++++.++
T Consensus 222 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl 301 (509)
T KOG2504|consen 222 PLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFL 301 (509)
T ss_pred CCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHH
Confidence 411110 00 0000 0 00 00 111112 3567787776
Q ss_pred HHHHH-----HH-HHHHHHHH----HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcc-ccee-eeee
Q psy5252 114 WIFLN-----LN-WSIVADMT----LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQL-GAST-LVAN 181 (285)
Q Consensus 114 ~~~~~-----~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~-~~~~-~~~~ 181 (285)
.+... .. ..|..... ..+.+..+.+...+.. .+..++|+++.|+++|+...++.. ...+ +..+
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Sii-----gi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~g 376 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSII-----GVSDIIGRIILGLLADKPGIRALVLFLLTLLIAG 376 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHH-----HHhhhhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence 52221 11 11222222 2344444444444433 366778899999999998843221 1111 1111
Q ss_pred cc---cc--cc----ccccccccccccCCcch-hhhhccccCCcch-----------hhhccccchhhhhhhhhhh-hHH
Q psy5252 182 AM---LP--SS----LAPSLPFSSSNSTSLPL-VSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLA-LQY 239 (285)
Q Consensus 182 ~~---~~--~~----~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~-~~~ 239 (285)
.. .+ .. .....++....+..... ...+.|+++.+.- .++..+||.+.|++.|..+ |..
T Consensus 377 l~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~ 456 (509)
T KOG2504|consen 377 LARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH 456 (509)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence 11 11 11 12222222222222222 2456677776663 2566899999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy5252 240 ALFITSFIEVLGGIFFLLGS 259 (285)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ 259 (285)
.|+.+++..+++++++++..
T Consensus 457 ~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 457 AFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ehhhcChHHHHHHHHHHHhH
Confidence 99999999999998888766
No 81
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.42 E-value=1.8e-13 Score=117.79 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=94.4
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+|++.+...+....++.|++| ++|++++++++.+.++|..+++.+.+.+.+..+ +||+.|.+.+++.++... ...
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~---~~~ 172 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL---AWI 172 (355)
T ss_pred HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHh
Confidence 577777777888889999995 689999999999999999999999999887653 399999877765444322 223
Q ss_pred cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252 81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISH 149 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
++.+++++++++ .++ ...+..+|+|.++... ....|.|.+.. ..+.++...+...+. .
T Consensus 173 ~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~~~~~~g~~~~~-----~ 241 (355)
T TIGR00896 173 PQVRRRVAANQT-TTR----LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILI-SHGASAATAGSLLAL-----M 241 (355)
T ss_pred hhhccccCCCCC-CCC----CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHH-----H
Confidence 332221111111 010 1123345566554311 12233444332 234443333333332 2
Q ss_pred hccccchhhhhHHHhHHhhhhh
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSL 171 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~ 171 (285)
.++.+++.++.|+++||+++++
T Consensus 242 ~~~~i~~~~~~g~l~dr~~~~~ 263 (355)
T TIGR00896 242 QLAQAASALLIPALARRVKDQR 263 (355)
T ss_pred HHHHHHHHHhHHHHHhhhccch
Confidence 3667778889999999995443
No 82
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.40 E-value=1.3e-12 Score=112.77 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=97.3
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc---------CCchHHH-HHhhHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM---------GAWPWSL-RVTPVLGAC 71 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~---------g~wr~~f-~i~~~~~~~ 71 (285)
+|++.+. .+...++++|++|+|+|+++++++....++|..+++.+++.+.... .+||+.| ++.++...+
T Consensus 101 ~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 179 (366)
T TIGR00886 101 IGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLL 179 (366)
T ss_pred HHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Confidence 5777554 4667899999999999999999999888888888888877766521 1499999 444555555
Q ss_pred HHHHHHHhccCCcCccccCcc-ccc------cccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcC
Q psy5252 72 AVLLILFFMEDPERGEAEGRV-TEE------RTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVL 133 (285)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 133 (285)
..++.....+|.++++.++++ +.+ ++...+..+..+++|.++... ....+.+.+....++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 259 (366)
T TIGR00886 180 PALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLS 259 (366)
T ss_pred HHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 555555555554332211111 000 001111345566777665411 12233344333333444
Q ss_pred CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcc
Q psy5252 134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQL 173 (285)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~ 173 (285)
+.+.+...... .+..+++.++.|+++||+++|+..
T Consensus 260 ~~~~~~~~~~~-----~~~~~~~~~~~g~l~~r~g~~~~~ 294 (366)
T TIGR00886 260 KVTAGAYASLG-----GLLGSLARPLGGAISDRLGGARKL 294 (366)
T ss_pred HHHHHHHHHHH-----HHHHHHHhhccchHHHhhccchhH
Confidence 44433332222 244456678999999999997544
No 83
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.37 E-value=1.3e-12 Score=114.09 Aligned_cols=243 Identities=9% Similarity=-0.016 Sum_probs=133.5
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
|++.+...+...++..|.. +++++.+|......++|.++++.+++.+.+ .+ ||..|++.+++.++..++.....+|
T Consensus 110 g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~-~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 110 GFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-ID-PQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cC-chHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4445555566666665543 334567788888899999999999998876 44 9999999988887776555544555
Q ss_pred CcCccccCcc--ccccccHHHHHHHHhhhhhhHHHHHH-----------HHHHHHHHHHHHhcCCCCcc-hhHHHHHHHh
Q psy5252 83 PERGEAEGRV--TEERTSFGEDIRALCKNHRETWIFLN-----------LNWSIVADMTLYVVLPLRRS-TAEAFQILIS 148 (285)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 148 (285)
+++++..++. .++++...++.++.+|+|.++..... ..|.+.+... +..+ ...+ ...+....+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~-~~~~-~~~~~~~~g~~~~~- 262 (396)
T TIGR00882 186 APSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTS-FFAT-PQQGTRVFGYVTTM- 262 (396)
T ss_pred CchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc-cccchHHHHHHHHH-
Confidence 4332211110 01111122456778888887542111 1122222211 1111 1111 122322222
Q ss_pred hhccccchhhhhHHHhHHhhhhhcccceeee--e---ecccc-cc--ccccccccccccCCcch-----hhhhccccCCc
Q psy5252 149 HAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NAMLP-SS--LAPSLPFSSSNSTSLPL-----VSSLDETAHRS 215 (285)
Q Consensus 149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~~~~-~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~ 215 (285)
..+...++....|++.||+++|+........ + .+... .. +.....+. +...|. .....+..|++
T Consensus 263 ~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~---g~~~~~~~~~~~~~~~~~~~~~ 339 (396)
T TIGR00882 263 GELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLH---AFEVPFLLVGCFKYITSQFDVR 339 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCcc
Confidence 2233444567889999999999765442211 1 11111 11 11111110 111121 12334555666
Q ss_pred ch------------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5252 216 DE------------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFF 255 (285)
Q Consensus 216 ~r------------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (285)
.+ .+|..++|.+.|++.|..|++.+|.+.+++..++.+.-
T Consensus 340 ~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 340 LSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 54 14678999999999999999999988777766665543
No 84
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.36 E-value=5.1e-12 Score=104.87 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=140.6
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|.|.+..++..+++|.+.|| ||-+..+|+|....++|.++++.++-.+.++.++||.....-+.++++..+.+....
T Consensus 109 ~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~- 186 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA- 186 (395)
T ss_pred HHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 578888889999999999995 589999999999999999999999999999885699999999999888776654442
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
.|++..+.+. +. .....++|+|.-|. .++...|.|.+.. +.++++++.|...+... +...
T Consensus 187 --~r~~~~~~~~-~~----~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~-l~~~ 257 (395)
T COG2807 187 --LREQAASIAT-KL----VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQ-LAQL 257 (395)
T ss_pred --cccccccccc-cc----ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHH-HHHH
Confidence 2211111110 00 11123566665443 5567788888744 56888888887777443 3333
Q ss_pred ccccchhhhhHHHhHHhhhhhccccee---e---eeecccccc---cccccccccc-ccCCcchhhhhccccCCcch---
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGAST---L---VANAMLPSS---LAPSLPFSSS-NSTSLPLVSSLDETAHRSDE--- 217 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~---~---~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r--- 217 (285)
.... ..-.+.+|...++...... . ..++.+.+. +...+.+..+ .+.++.....+.+..+..+.
T Consensus 258 ~~~l----l~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~ 333 (395)
T COG2807 258 PTAL----LIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAA 333 (395)
T ss_pred HHHH----HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHH
Confidence 4444 4445555543333222211 1 122222222 1222333333 33333334445544443332
Q ss_pred ------hhh---ccccchhhhhhhhhhh-hHHHHHHH
Q psy5252 218 ------FLA---HKSDEFLAHKSDEFLA-LQYALFIT 244 (285)
Q Consensus 218 ------~l~---~~~~p~~~G~~~~~~~-~~~~~~~~ 244 (285)
.+| .+.||++.|.+.|..| |+..+...
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l 370 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLL 370 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHH
Confidence 133 3899999999999887 77665543
No 85
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.35 E-value=4.3e-12 Score=106.72 Aligned_cols=242 Identities=14% Similarity=0.061 Sum_probs=146.8
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc------------------cCCchHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV------------------MGAWPWSLR 63 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~------------------~g~wr~~f~ 63 (285)
.|.|.+...+.++.+++..-++++..+.+++.+..+++|.+++|.+++.+..+ ..+||++|.
T Consensus 114 la~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl 193 (422)
T COG0738 114 LASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYL 193 (422)
T ss_pred HHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHH
Confidence 46788888999999999999999999999999999999999999999998873 124888888
Q ss_pred HhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhc
Q psy5252 64 VTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVV 132 (285)
Q Consensus 64 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 132 (285)
+.+...++..+. ....|.|+.+..+++..+.+ + ......+++|.+++.. ....|.+.+.....+.
T Consensus 194 ~~~~~lvll~v~-~~~~k~p~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~ 269 (422)
T COG0738 194 ILAGLLVLLAVL-ILLSKLPDLQVAAPSLGASG-S--AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGL 269 (422)
T ss_pred HHHHHHHHHHHH-HHhccCCcCCcccccccccc-c--chHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 887766555433 33444333322222211111 1 1456677888776611 1334455544433333
Q ss_pred CCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee-----eeeecccccc-cc--ccccccccccCCcc-
Q psy5252 133 LPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST-----LVANAMLPSS-LA--PSLPFSSSNSTSLP- 203 (285)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~-----~~~~~~~~~~-~~--~~~~~~~~~~~~~~- 203 (285)
+..+.....+.. ..+.++|+.++.++..|+...+.....+ +.+...+.+. +. ........++..-|
T Consensus 270 ~~~~aa~~~s~~-----~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPT 344 (422)
T COG0738 270 NEQQAAYYLSFF-----WVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPT 344 (422)
T ss_pred cHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHH
Confidence 333333333333 3777888888888888888876554422 1111111211 11 11111112233333
Q ss_pred hhhhhccccCCcch---------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252 204 LVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG 252 (285)
Q Consensus 204 ~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~ 252 (285)
..+.-.+..|++.. -.|+++-|.+.|++.|+.|.+..+......+.+..
T Consensus 345 Ifslal~~l~~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 345 IFSLALKNLGEHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHhccCccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 35555566663332 15779999999999999998877664455444444
No 86
>PRK09669 putative symporter YagG; Provisional
Probab=99.28 E-value=1.6e-11 Score=108.91 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=125.9
Q ss_pred ccccccchhHHHHhhcc-cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHHH
Q psy5252 5 GEASYSTIAPTIISDLF-VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLIL 77 (285)
Q Consensus 5 g~~~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~~ 77 (285)
+......+-.++.+|+. +++||.+..++.....++|..+++.+...+...++ +|+..+.+.++++++..+..+
T Consensus 122 ~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~ 201 (444)
T PRK09669 122 VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF 201 (444)
T ss_pred HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 33445556678888988 45789999999988888888887766554443221 388888888887776665555
Q ss_pred HhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHHH-----HHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcc
Q psy5252 78 FFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNL-----NWSIVADMTLYVVLPLRRSTAEAFQILISHAFG 152 (285)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 152 (285)
+..||.++++ + +++.+.++.++..+++|.++...... ..........+....................+.
T Consensus 202 ~~~~e~~~~~--~---~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~ 276 (444)
T PRK09669 202 FMTKERYTPE--V---DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIA 276 (444)
T ss_pred CCeEEecCCC--C---cCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHH
Confidence 5555543221 1 12344667788889999876632211 111100111111111110111111222233355
Q ss_pred ccchhhhhHHHhHHhhhhhcccceee--e---e-eccccc-c---c-ccccccccc-ccCCcchhhhhccccCCcc----
Q psy5252 153 DAGSPYLIGLLSEMFRHSLQLGASTL--V---A-NAMLPS-S---L-APSLPFSSS-NSTSLPLVSSLDETAHRSD---- 216 (285)
Q Consensus 153 ~~~g~~~~G~l~d~~~~~~~~~~~~~--~---~-~~~~~~-~---~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~---- 216 (285)
.+++.++.++++||+++|+....... . . .+..+. . + ........+ ........++++|.++.++
T Consensus 277 ~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G 356 (444)
T PRK09669 277 GLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSG 356 (444)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 55667788999999999876554221 1 0 111111 1 1 111111212 2233335677888876322
Q ss_pred -h-----h--------hhccccchhhhhhhhhhhh
Q psy5252 217 -E-----F--------LAHKSDEFLAHKSDEFLAL 237 (285)
Q Consensus 217 -r-----~--------l~~~~~p~~~G~~~~~~~~ 237 (285)
| + +|.++||.+.|.+.|..|+
T Consensus 357 ~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 357 RRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2 0 6678999999999887766
No 87
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.27 E-value=2.2e-11 Score=108.97 Aligned_cols=79 Identities=15% Similarity=0.316 Sum_probs=65.4
Q ss_pred CcccccccccchhHHHHhhcccCC--chhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKD--LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILF 78 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~--~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~ 78 (285)
++|+|.|...|...++++|++|++ +|++++++++.+.++|..+||.+++++.+++| ||+.|++.++. ++..++.+.
T Consensus 114 l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w~~~F~i~~i~-~~~~~~~~~ 191 (489)
T PRK10207 114 TIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-YSVTYNLCGAG-LIIALLVYF 191 (489)
T ss_pred HHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHH-HHHHHHHHH
Confidence 368999999999999999999887 45789999999999999999999999999996 99999987653 333334444
Q ss_pred hcc
Q psy5252 79 FME 81 (285)
Q Consensus 79 ~~~ 81 (285)
..+
T Consensus 192 ~~~ 194 (489)
T PRK10207 192 ACR 194 (489)
T ss_pred Hcc
Confidence 444
No 88
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.26 E-value=4e-11 Score=106.44 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=152.9
Q ss_pred cccccchhHHHHhhcccCCch--------------------------hHHHHHHHHHHhhHHHHHHHHHHHhhhccCC--
Q psy5252 6 EASYSTIAPTIISDLFVKDLR--------------------------SQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA-- 57 (285)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~~~r--------------------------g~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~-- 57 (285)
.+.......+++.|..+++++ ++..+.-.....+|..+...+.-.+....++
T Consensus 140 ~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~ 219 (477)
T PF11700_consen 140 YEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTA 219 (477)
T ss_pred HHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 344556678899999999988 9999999999999999888887776543332
Q ss_pred -----chHHHHHhhHHHHHHHHHHHHhccCCcCccccCc-cc---cccccHHHHHHHHhhhhhhHHHHH-----------
Q psy5252 58 -----WPWSLRVTPVLGACAVLLILFFMEDPERGEAEGR-VT---EERTSFGEDIRALCKNHRETWIFL----------- 117 (285)
Q Consensus 58 -----wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~----------- 117 (285)
-|..+.+.++--++..+..++++||.++++..+. .. ..-++..+.++...+.|....+..
T Consensus 220 ~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~t 299 (477)
T PF11700_consen 220 SNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNT 299 (477)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888888888887665322111 11 111234455666666666544221
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh--hccccee------eeeecc------
Q psy5252 118 NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS--LQLGAST------LVANAM------ 183 (285)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~--~~~~~~~------~~~~~~------ 183 (285)
.......+.....+++..+. . ...+...+..++|.++.|++.||+|.| +.+.... ...++.
T Consensus 300 i~~~~~i~a~~~lg~s~~~l----~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~ 374 (477)
T PF11700_consen 300 IISFAGIYATEVLGMSTTQL----I-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSF 374 (477)
T ss_pred HHHHHHHHHHHhcCcCHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 11112223233344444332 2 222222355566788999999999999 4333211 001111
Q ss_pred --cccc---cccccccccc-ccCCcchhhhhccccCCcch--h---------hhccccchhhhhhhhhhh-hHHHHHHHH
Q psy5252 184 --LPSS---LAPSLPFSSS-NSTSLPLVSSLDETAHRSDE--F---------LAHKSDEFLAHKSDEFLA-LQYALFITS 245 (285)
Q Consensus 184 --~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r--~---------l~~~~~p~~~G~~~~~~~-~~~~~~~~~ 245 (285)
.... +.++...+.. ++..+...++.+|+.|+++. + ....+||.+.|.+.|..| .|+++....
T Consensus 375 ~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~ 454 (477)
T PF11700_consen 375 FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLL 454 (477)
T ss_pred cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 1111 2333333222 23333346889999999887 2 334899999999999987 899998877
Q ss_pred HHHHHHHHHHHH
Q psy5252 246 FIEVLGGIFFLL 257 (285)
Q Consensus 246 ~~~~~~~~~~~~ 257 (285)
++.+++.+++..
T Consensus 455 ~lf~~gl~ll~~ 466 (477)
T PF11700_consen 455 VLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHhh
Confidence 777777776644
No 89
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.25 E-value=2.5e-11 Score=109.11 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=59.6
Q ss_pred cccccccccchhHHHHhhcccCCc--hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDL--RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGAC 71 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~--rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~ 71 (285)
+|++.|...+...++++|++|+++ |..++++++.+.++|..+||.+++++.+.+| ||+.|.+.++...+
T Consensus 122 ~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~~F~i~~i~~~i 192 (500)
T PRK09584 122 IAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSVAFALSVVGMLI 192 (500)
T ss_pred HHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHH
Confidence 578888889999999999998654 4568999999999999999999999999886 99999988754443
No 90
>KOG0252|consensus
Probab=99.19 E-value=8.2e-12 Score=106.46 Aligned_cols=265 Identities=13% Similarity=0.076 Sum_probs=163.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC--------------CchHHHHHhh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG--------------AWPWSLRVTP 66 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g--------------~wr~~f~i~~ 66 (285)
++|+|.|+-+|...++.+|...+++||..++...+.+..|...|.+++-.+...+. =||..|.+..
T Consensus 153 ~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~ 232 (538)
T KOG0252|consen 153 LLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGA 232 (538)
T ss_pred HhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999998888888877664321 1999999888
Q ss_pred HHHHHHHHHHHHhccCCcCcccc--Cc---------c--cc----------ccccHHHHHH----HHhhhhhhHHHHHHH
Q psy5252 67 VLGACAVLLILFFMEDPERGEAE--GR---------V--TE----------ERTSFGEDIR----ALCKNHRETWIFLNL 119 (285)
Q Consensus 67 ~~~~~~~~l~~~~~~~~~~~~~~--~~---------~--~~----------~~~~~~~~~~----~~~~~~~~~~~~~~~ 119 (285)
++++... ..+..+||+++.... ++ + .. ......+..+ ...+.....++....
T Consensus 233 vpa~~~l-y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~ 311 (538)
T KOG0252|consen 233 VPALLVL-YFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAG 311 (538)
T ss_pred HHHHHHH-HhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 8776654 778888998764310 00 0 00 0000011111 111111111133344
Q ss_pred HHHHH------------HHHHHHhcCCCCcch----hHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee------
Q psy5252 120 NWSIV------------ADMTLYVVLPLRRST----AEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST------ 177 (285)
Q Consensus 120 ~~~~~------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~------ 177 (285)
.|... ......+..+..... ..+....+...++.+.|.++...++|++||+..-...+
T Consensus 312 ~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~ 391 (538)
T KOG0252|consen 312 TWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIF 391 (538)
T ss_pred HHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHH
Confidence 44321 001112333333222 23444556667888888999999999999997544422
Q ss_pred -eeeecccc-c--c--ccccccccc---cccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhh----
Q psy5252 178 -LVANAMLP-S--S--LAPSLPFSS---SNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDE---- 233 (285)
Q Consensus 178 -~~~~~~~~-~--~--~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~---- 233 (285)
+.+++.+. . . ..+...+.. -.+.++.+....+|.+|++.|. .|..++....+++.+
T Consensus 392 ~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp 471 (538)
T KOG0252|consen 392 FFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYP 471 (538)
T ss_pred HHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCC
Confidence 11222222 1 1 111111111 1344444566778999999993 555788888889998
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5252 234 -FLALQYALFITSFIEVLGGIFFLLGSLYIVQDR 266 (285)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
..+.+.+|++...++.++.+.-++......|+.
T Consensus 472 ~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~l 505 (538)
T KOG0252|consen 472 PNIGVRNVFIILAGCMLLGILFTLLIPETKGKSL 505 (538)
T ss_pred ccccchHHHHHHHHHHHHhHheeEEeecccccCH
Confidence 788999999988888888777666554444433
No 91
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.19 E-value=8.8e-11 Score=105.06 Aligned_cols=232 Identities=8% Similarity=0.018 Sum_probs=122.6
Q ss_pred ccccccchhHHHHhhcc-cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHHH
Q psy5252 5 GEASYSTIAPTIISDLF-VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLIL 77 (285)
Q Consensus 5 g~~~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~~ 77 (285)
+.....+.-.++++|+. +++||.+..++.....++|..+.+.+...+.+.++ +|+....+.+++.++..+...
T Consensus 119 ~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~ 198 (473)
T PRK10429 119 TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL 198 (473)
T ss_pred HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778889988 58899999999777778776666555544332221 266666666666665555555
Q ss_pred HhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHHH--HHHHHHH---HHHHhcCCC-CcchhHHHHHHHhhhc
Q psy5252 78 FFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNL--NWSIVAD---MTLYVVLPL-RRSTAEAFQILISHAF 151 (285)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (285)
+..||.+++..++.+++++.+.++.++.+++||.++...... .+..... ...+..... ......+... ....+
T Consensus 199 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~-~~~~i 277 (473)
T PRK10429 199 RNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYL-SYAGA 277 (473)
T ss_pred cCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHH-HHHHH
Confidence 556664322111111223345778888888888876533211 1111110 101111100 0011122121 22224
Q ss_pred cccchhhhhHHHhHHhhhhhcccceee--e-----eec---ccccc---cc-cccccc-ccccCCcchhhhhccccCC--
Q psy5252 152 GDAGSPYLIGLLSEMFRHSLQLGASTL--V-----ANA---MLPSS---LA-PSLPFS-SSNSTSLPLVSSLDETAHR-- 214 (285)
Q Consensus 152 g~~~g~~~~G~l~d~~~~~~~~~~~~~--~-----~~~---~~~~~---~~-~~~~~~-~~~~~~~~~~~~~~~~~p~-- 214 (285)
+.+++.++.++++||+++|+....... + ..+ ..+.. +. ...+.. ..........++++|..+.
T Consensus 278 ~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e 357 (473)
T PRK10429 278 ANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE 357 (473)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 556667789999999999976643211 0 000 11111 11 111111 1123334456778888664
Q ss_pred ---cchh-------------hhccccchhhhhhhhhhhh
Q psy5252 215 ---SDEF-------------LAHKSDEFLAHKSDEFLAL 237 (285)
Q Consensus 215 ---~~r~-------------l~~~~~p~~~G~~~~~~~~ 237 (285)
..|. ++.++++.+.|.+.+..|+
T Consensus 358 ~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 358 YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3340 5668899999988876655
No 92
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.15 E-value=2.3e-11 Score=107.06 Aligned_cols=217 Identities=12% Similarity=-0.007 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH
Q psy5252 38 PIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL 117 (285)
Q Consensus 38 ~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (285)
.+|.++++.+++.+.... +|+ +|++.+++.++..+ ..+.+||+++++.+++.+ .++......+..+|+|.+++...
T Consensus 140 ~lG~~ig~~l~g~l~~~~-~~~-~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~~~~~ 215 (418)
T TIGR00889 140 TIGFIAAMWAVSLLDIEL-SNI-QLYITAGSSALLGV-FALTLPDIPVAKSTAKMS-IKVMLGLDAFILFKNKRMAIFFF 215 (418)
T ss_pred hHHHHHHHHHHHHhcccc-hhH-HHHHHHHHHHHHHH-HHhcCCCCCCCccccccC-HHHHhhhhHHHHhcCCCeeeHHH
Confidence 478888999988884322 254 46666666655553 345667764322111111 11111123445778887654221
Q ss_pred H--HHHH-----HHH---HHHHHhcCCCCc---c-hhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--e-
Q psy5252 118 N--LNWS-----IVA---DMTLYVVLPLRR---S-TAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A- 180 (285)
Q Consensus 118 ~--~~~~-----~~~---~~~~~~~~~~~~---~-~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~- 180 (285)
. .... ..+ .....+.++... + ...+ .......++.+++.+..|+++||+++|+......+. +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g-~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~ 294 (418)
T TIGR00889 216 FSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNAS-IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALR 294 (418)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1 1100 011 111222222111 1 1112 222222355566678999999999999866553211 1
Q ss_pred ----ecccc-c---c-cccc-ccccccc-cCCcchhhhhccccCCcchh------------hhccccchhhhhhhhhh--
Q psy5252 181 ----NAMLP-S---S-LAPS-LPFSSSN-STSLPLVSSLDETAHRSDEF------------LAHKSDEFLAHKSDEFL-- 235 (285)
Q Consensus 181 ----~~~~~-~---~-~~~~-~~~~~~~-~~~~~~~~~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~-- 235 (285)
..... . . +.+. .....+. .........+.|.+|++.|. ++..+||.+.|.+.|+.
T Consensus 295 ~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~ 374 (418)
T TIGR00889 295 FGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA 374 (418)
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 11111 1 1 1111 1111111 22233356688999998871 45579999999999984
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252 236 ----ALQYALFITSFIEVLGGIFFLLGS 259 (285)
Q Consensus 236 ----~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
||+.++...+++.++..+++....
T Consensus 375 ~~~~~~~~~f~~~~~~~~i~~~l~~~~~ 402 (418)
T TIGR00889 375 YGTFDWQTMWLFFAGYIAILAVLFMIFF 402 (418)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 588888877777666665555443
No 93
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.13 E-value=4.3e-10 Score=100.55 Aligned_cols=71 Identities=15% Similarity=0.342 Sum_probs=62.7
Q ss_pred cccccccccchhHHHHhhcccCCc---hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDL---RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV 73 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~---rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~ 73 (285)
.|+|.+...|+..++++|++|+++ |++++++++.+.++|.++|+.+++++.+.++ ||+.|.+.++..++..
T Consensus 112 ~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g-~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 112 IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG-YHVGFNLAAVGMVIGL 185 (475)
T ss_pred HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Confidence 578899999999999999998864 8889999999999999999999999999886 9999998886554443
No 94
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.12 E-value=2e-11 Score=108.86 Aligned_cols=226 Identities=12% Similarity=0.060 Sum_probs=125.9
Q ss_pred ccccccccchhHHHHhhcccCCchhHH---HHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQM---LAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~---~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
+++.+...+++-++..|..+ |++... .++.....++|.++++.+++.+.+.++ ||..|++.+.+.++. .+...+
T Consensus 131 ~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~-~~~~f~~~a~l~ll~-~~~~~~ 207 (468)
T TIGR00788 131 ALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL-TRILFLITAALLLLQ-LFVSNL 207 (468)
T ss_pred HHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHH-HHHHHh
Confidence 45556667788889999998 555543 344445556899999999999999886 999999998887766 344566
Q ss_pred ccCCcCc-cccCccc---------c----ccccHHHHHHHHhhhhhhHHHHH--HHHHHH--H-------HHHHHHhcCC
Q psy5252 80 MEDPERG-EAEGRVT---------E----ERTSFGEDIRALCKNHRETWIFL--NLNWSI--V-------ADMTLYVVLP 134 (285)
Q Consensus 80 ~~~~~~~-~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~-------~~~~~~~~~~ 134 (285)
++|++.. ..+..++ . ...+.....+..+++|..+.... +..+.. . +.....+.++
T Consensus 208 ~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~ 287 (468)
T TIGR00788 208 SKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGP 287 (468)
T ss_pred cccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCc
Confidence 7775411 1110000 0 00111123444566676654222 221111 0 0011234455
Q ss_pred CCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--eec-----cc---------ccc-ccccc--ccc
Q psy5252 135 LRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA-----ML---------PSS-LAPSL--PFS 195 (285)
Q Consensus 135 ~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~-----~~---------~~~-~~~~~--~~~ 195 (285)
+..|...+... ++.+++..+.+++.+|++.|+......+. ++. .. +.. +..+. +-.
T Consensus 288 ~~~G~~~~~~~-----v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~ 362 (468)
T TIGR00788 288 SFSGMSKVVGN-----LGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE 362 (468)
T ss_pred chhhhHHHHHH-----HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence 55555544322 55555666777776676666543331111 000 00 000 01110 000
Q ss_pred -ccccCCcchhhhhccccCCcch-----------hhhccccchhhhhhhhhhh
Q psy5252 196 -SSNSTSLPLVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLA 236 (285)
Q Consensus 196 -~~~~~~~~~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~ 236 (285)
.......|....+++.+|++.+ .+|..+++.++|.+.++.|
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1123445567888899999986 2777899999999998877
No 95
>KOG3626|consensus
Probab=99.10 E-value=3.8e-10 Score=102.51 Aligned_cols=166 Identities=18% Similarity=0.231 Sum_probs=127.3
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------------------CchHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------------------AWPWSL 62 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------------------~wr~~f 62 (285)
+.|+|..+.++.+.+|+.|.+.+++-...+|++++...+|+++|.++++++.+.|. -|...|
T Consensus 246 l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGF 325 (735)
T KOG3626|consen 246 LLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGF 325 (735)
T ss_pred HhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHH
Confidence 46999999999999999999999999999999999999999999999999988653 277779
Q ss_pred HHhhHHHHHHHHHHHHhccCCcCccc-----cC---ccc----c-------ccccHHHHHHHHhhhhhhHH---------
Q psy5252 63 RVTPVLGACAVLLILFFMEDPERGEA-----EG---RVT----E-------ERTSFGEDIRALCKNHRETW--------- 114 (285)
Q Consensus 63 ~i~~~~~~~~~~l~~~~~~~~~~~~~-----~~---~~~----~-------~~~~~~~~~~~~~~~~~~~~--------- 114 (285)
++.+.+.++..+.++++.++.++..+ +. +.+ + +-+++...++.+++||.+..
T Consensus 326 Li~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~ 405 (735)
T KOG3626|consen 326 LICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIES 405 (735)
T ss_pred HHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 99999999988888777766554321 00 000 0 11234556777888888865
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252 115 --IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS 170 (285)
Q Consensus 115 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~ 170 (285)
+..+..+.|.|...+++.++..++...+... +.+..+|.+++|.+..|+.-+
T Consensus 406 ~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~----vp~~~~Gi~lGG~iikkfkl~ 459 (735)
T KOG3626|consen 406 LAITGYITFLPKYLETQFGISASLANILTGSIG----VPAAAVGIFLGGLIIKKFKLS 459 (735)
T ss_pred HHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhh----hhhhhhhhhccceeeeeeccc
Confidence 2235667888999999999988888877665 344555667899999887654
No 96
>KOG0569|consensus
Probab=99.03 E-value=5.8e-10 Score=97.97 Aligned_cols=83 Identities=19% Similarity=0.419 Sum_probs=68.3
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHH-HhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGS-TAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~-~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
.|+..+.......-++.|..|++.||..-.+.+.+.++|..++..++. .+......|++.+....+++++.. +...++
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~ 204 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFL 204 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcC
Confidence 578888888999999999999999999999999999999999977753 344333359999998888887766 555788
Q ss_pred cCCcC
Q psy5252 81 EDPER 85 (285)
Q Consensus 81 ~~~~~ 85 (285)
||.|+
T Consensus 205 PESPk 209 (485)
T KOG0569|consen 205 PESPK 209 (485)
T ss_pred CCCcc
Confidence 88775
No 97
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.02 E-value=3.6e-10 Score=99.86 Aligned_cols=227 Identities=16% Similarity=0.160 Sum_probs=136.4
Q ss_pred cccccccchhHHHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHH
Q psy5252 4 IGEASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLI 76 (285)
Q Consensus 4 ~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~ 76 (285)
++.......-.++.+|+.++ |||.+..+....+..+|..+...+.+.+.+..+ +|++...+.+++.++..++.
T Consensus 115 ~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~ 194 (428)
T PF13347_consen 115 IAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLIT 194 (428)
T ss_pred HhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhh
Confidence 34455666778899999984 789999999999999999877777777775443 49999999998888888788
Q ss_pred HHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH-----HHHH----HHHHHHHHhcCCCCcchhHHHHHHH
Q psy5252 77 LFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN-----LNWS----IVADMTLYVVLPLRRSTAEAFQILI 147 (285)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (285)
.+..||.+++. ++++++.+.++.++.++++|.+...... ..+. ...+...+....+.. .+....
T Consensus 195 ~~~~ke~~~~~---~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~---~~~~~~- 267 (428)
T PF13347_consen 195 FFFVKERSVEV---TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL---ISIFML- 267 (428)
T ss_pred hheeeeccccc---cccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh---hHHHHH-
Confidence 77878722211 1123344567778888999887652211 1111 111122233322221 111111
Q ss_pred hhhccccchhhhhHHHhHHhhhhhcccceeee------eecccc--cc-c--ccccccc-ccccCCcchhhhhccccCCc
Q psy5252 148 SHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV------ANAMLP--SS-L--APSLPFS-SSNSTSLPLVSSLDETAHRS 215 (285)
Q Consensus 148 ~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~------~~~~~~--~~-~--~~~~~~~-~~~~~~~~~~~~~~~~~p~~ 215 (285)
...++.+++.++.++++||+|+|+........ .....+ +. + ....... .....+....++++|..+.+
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD 347 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence 22355566677899999999999866553211 111121 22 1 1111111 12344455678888887754
Q ss_pred c-----h--h-----------hhccccchhhhhhhhhhhh
Q psy5252 216 D-----E--F-----------LAHKSDEFLAHKSDEFLAL 237 (285)
Q Consensus 216 ~-----r--~-----------l~~~~~p~~~G~~~~~~~~ 237 (285)
+ | . ++.++++.+.|.+.+..|+
T Consensus 348 e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 348 EWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 3 2 0 5567888888887765554
No 98
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.02 E-value=2.4e-12 Score=114.39 Aligned_cols=84 Identities=19% Similarity=0.352 Sum_probs=69.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC--CchHHHHHhhHHHHHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG--AWPWSLRVTPVLGACAVLLILF 78 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g--~wr~~f~i~~~~~~~~~~l~~~ 78 (285)
++|++.|...+....++.|..|+++|++..++.+....+|..++..++..+....+ .||..+.+..+++++.. +...
T Consensus 111 ~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~ 189 (451)
T PF00083_consen 111 LIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRF 189 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 57999999999999999999999999999999999999999998888766633221 39999998888887655 4457
Q ss_pred hccCCcC
Q psy5252 79 FMEDPER 85 (285)
Q Consensus 79 ~~~~~~~ 85 (285)
++||.|+
T Consensus 190 ~~pESP~ 196 (451)
T PF00083_consen 190 FLPESPR 196 (451)
T ss_pred ccccccc
Confidence 7888764
No 99
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.01 E-value=3.3e-09 Score=90.21 Aligned_cols=227 Identities=15% Similarity=0.175 Sum_probs=131.1
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchH--HHHHhhHHHHHHHHHHHHh
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW--SLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~--~f~i~~~~~~~~~~l~~~~ 79 (285)
.|+|.+...++..++++|..|+|+|+++.++..+...+|.+++..+.+.+.+.+..-|. .+...+++.++..++. .+
T Consensus 99 ~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia-~w 177 (403)
T PF03209_consen 99 YGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIA-LW 177 (403)
T ss_pred HHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 58888999999999999999999999999999999999999999999999987642222 2333333333333222 23
Q ss_pred ccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHH----------HHhcCCCCcchhHHHHHHHh
Q psy5252 80 MEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNLNWSIV-ADMT----------LYVVLPLRRSTAEAFQILIS 148 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~ 148 (285)
-.|++.++..+.+++++.++++.+++++.+|....++.+...... +... .++++..+-....+..
T Consensus 178 g~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~---- 253 (403)
T PF03209_consen 178 GQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFW---- 253 (403)
T ss_pred hcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHH----
Confidence 345544433333345667788999999988876554433332221 2122 2344444333333322
Q ss_pred hhccccchhhhhHHHhH-Hhhhhhcccceee--eeecc-------c-ccc-cccc-ccccccccCCcc-hhhhhccccCC
Q psy5252 149 HAFGDAGSPYLIGLLSE-MFRHSLQLGASTL--VANAM-------L-PSS-LAPS-LPFSSSNSTSLP-LVSSLDETAHR 214 (285)
Q Consensus 149 ~~~g~~~g~~~~G~l~d-~~~~~~~~~~~~~--~~~~~-------~-~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~p~ 214 (285)
..|.++|....|++.. +.++++.....+. +.++. . +.. +-.+ +++..+++.+.. ..+...++..+
T Consensus 254 -~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~ 332 (403)
T PF03209_consen 254 -GGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA 332 (403)
T ss_pred -HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC
Confidence 3566666667777766 4444443333221 11111 1 111 2111 222222333332 34556677766
Q ss_pred cch-----------hhhccccchhhhhhhhh
Q psy5252 215 SDE-----------FLAHKSDEFLAHKSDEF 234 (285)
Q Consensus 215 ~~r-----------~l~~~~~p~~~G~~~~~ 234 (285)
+.. .++..++-.++|.+.|.
T Consensus 333 ~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 333 GRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 14456777777887763
No 100
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.96 E-value=1e-10 Score=105.32 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=2.9
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC---------------------Cch
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG---------------------AWP 59 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g---------------------~wr 59 (285)
+.|+|.++.++.+.+|+.|.+++++-+..+|++++...+|+++|.++++.+.+.+- .|.
T Consensus 150 l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWW 229 (539)
T PF03137_consen 150 LIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWW 229 (539)
T ss_dssp --SSS---------------------------------------------------------------------------
T ss_pred HHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHH
Confidence 57999999999999999999999999999999999999999999999999886531 277
Q ss_pred HHHHHhhHHHHHHHHHHHHhccCCcCcc---------c-cCc-c------cc--------ccccHHHHHHHHhhhhhhHH
Q psy5252 60 WSLRVTPVLGACAVLLILFFMEDPERGE---------A-EGR-V------TE--------ERTSFGEDIRALCKNHRETW 114 (285)
Q Consensus 60 ~~f~i~~~~~~~~~~l~~~~~~~~~~~~---------~-~~~-~------~~--------~~~~~~~~~~~~~~~~~~~~ 114 (285)
..|++.+++.++..+.+..+.|+-|+.. . +.+ . ++ ..+++...++.+++||.+.+
T Consensus 230 LGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~ 309 (539)
T PF03137_consen 230 LGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMC 309 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHH
Confidence 7788889888888877766655433320 0 000 0 00 01223445677788888865
Q ss_pred -----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252 115 -----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS 170 (285)
Q Consensus 115 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~ 170 (285)
...+..+.|.|...++..++...+...+... +.+..+|.+++|.+..|++-+
T Consensus 310 ~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~----ip~~~~G~llGG~ivkk~kl~ 372 (539)
T PF03137_consen 310 LILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVS----IPGAALGILLGGYIVKKFKLS 372 (539)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhh----cchhheehheEEEEEEEecCc
Confidence 2235567788888899999888887777554 356667778999999988654
No 101
>KOG2563|consensus
Probab=98.95 E-value=6.2e-09 Score=89.06 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=99.3
Q ss_pred ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc----C-CchH--HHHHhhHHHHHHHHHHHHhcc
Q psy5252 9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM----G-AWPW--SLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~----g-~wr~--~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+......+.+.||+++||..+..+-.+++.+|.+++.++...+..+- + .|.. .|...++++.+..++..+..+
T Consensus 157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~ 236 (480)
T KOG2563|consen 157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFT 236 (480)
T ss_pred hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444577889999999999999999999999999999999998764 1 2554 355455554444444444444
Q ss_pred CCcCcccc-CccccccccHHHHHHHHhhhhhhHHHHH------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccc
Q psy5252 82 DPERGEAE-GRVTEERTSFGEDIRALCKNHRETWIFL------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDA 154 (285)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 154 (285)
++|+-... .+....+.++.+.++..++++++..... ...+.....+.....+.+..+...+ .......++++
T Consensus 237 ~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG-~ig~l~iv~Gm 315 (480)
T KOG2563|consen 237 KKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAG-YIGALMIVAGM 315 (480)
T ss_pred CCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccc-hhHHHHHHHHH
Confidence 43322111 1111123458889999999999866222 1222222222212222222222222 22222346667
Q ss_pred chhhhhHHHhHHhhhhhcccc
Q psy5252 155 GSPYLIGLLSEMFRHSLQLGA 175 (285)
Q Consensus 155 ~g~~~~G~l~d~~~~~~~~~~ 175 (285)
+|.++.|.+.||.++-+....
T Consensus 316 lga~~~gii~Dktk~fk~~~~ 336 (480)
T KOG2563|consen 316 LGALASGIIADKTKKFKLTTL 336 (480)
T ss_pred HHHHHHHhhhhhhhhHHHHHH
Confidence 788899999999988765444
No 102
>PRK11462 putative transporter; Provisional
Probab=98.92 E-value=8.7e-09 Score=91.85 Aligned_cols=158 Identities=12% Similarity=0.102 Sum_probs=92.3
Q ss_pred ccccchhHHHHhhccc-CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHHHHh
Q psy5252 7 ASYSTIAPTIISDLFV-KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 7 ~~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
......-.++.+++.+ +|||.+..++...+.++|..+++.+...+.+..+ +|+....+.+++.++..++.+..
T Consensus 124 t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~ 203 (460)
T PRK11462 124 TVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFT 203 (460)
T ss_pred HHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455667777776 6899999999999999998888887666554432 37777777777766665555444
Q ss_pred ccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH--HHH-------HHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 80 MEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN--LNW-------SIVADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
.||.++++ +++.+.++.++..+++|.++..... ..+ ....+...+...... ..+ .......
T Consensus 204 ~kE~~~~~------~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~---~~~-~~l~~~~ 273 (460)
T PRK11462 204 TKERVEAP------PTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE---VFV-AFLTTYC 273 (460)
T ss_pred ceeccCCC------ccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH---HHH-HHHHHHH
Confidence 45532211 1223466778888888887553211 111 011111122222111 111 1122223
Q ss_pred ccccchhhhhHHHhHHhhhhhccc
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLG 174 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~ 174 (285)
++.+++.+++++++||+++|+...
T Consensus 274 i~~iig~~l~~~l~~r~gkk~~~~ 297 (460)
T PRK11462 274 VGNLIGSALAKPLTDWKCKVTIFW 297 (460)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHH
Confidence 455566779999999999886543
No 103
>PRK09848 glucuronide transporter; Provisional
Probab=98.85 E-value=1.1e-08 Score=90.95 Aligned_cols=229 Identities=10% Similarity=0.010 Sum_probs=109.1
Q ss_pred ccccccccchhHHHHhhcccC-CchhHHHHHHHHHHh-----hHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIP-----IGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLL 75 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~-----iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l 75 (285)
+++.+...++..++..+..++ +||.+..++...+.+ ++..++|.+.+....... .|.....+.+++.++..++
T Consensus 120 ~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ 199 (448)
T PRK09848 120 GLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFI 199 (448)
T ss_pred HHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 445566666666766666544 678888777665433 455555555543321110 1222222333333333333
Q ss_pred HHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--HHHHHHHHH---HHHHhc-CCCCcchhHHHHHHHhh
Q psy5252 76 ILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--NLNWSIVAD---MTLYVV-LPLRRSTAEAFQILISH 149 (285)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~ 149 (285)
.....||+++++ +++.+.++.++.++++|.+..... ...+..... ...+.. .........+.......
T Consensus 200 ~~~~~~e~~~~~------~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (448)
T PRK09848 200 CFKSTRENVVRI------VAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQN 273 (448)
T ss_pred HHcCcEeccCCC------ccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHH
Confidence 333344432211 112345677888999998876322 111111100 011111 01111122222323333
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeee--ee---c-ccc-cc-c--ccc-cccccc-ccCCcchhhhhccccCCcc-
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---A-MLP-SS-L--APS-LPFSSS-NSTSLPLVSSLDETAHRSD- 216 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~-~~~-~~-~--~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~- 216 (285)
.++.+++.++.++++||+++++........ ++ . ..+ .. + ... .+...+ .....+..++.+|..|+++
T Consensus 274 ~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~ 353 (448)
T PRK09848 274 LVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY 353 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455566778999999999988766542211 11 0 111 11 1 111 111111 2333445677778877643
Q ss_pred ----h-------------hhhccccchhhhhhhhhhhh
Q psy5252 217 ----E-------------FLAHKSDEFLAHKSDEFLAL 237 (285)
Q Consensus 217 ----r-------------~l~~~~~p~~~G~~~~~~~~ 237 (285)
| -+|.++++.+.|.+.+..|+
T Consensus 354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 15667888888887765554
No 104
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.76 E-value=1.3e-07 Score=82.71 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=66.2
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHh--hHHHHHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVT--PVLGACAVLLILF 78 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~--~~~~~~~~~l~~~ 78 (285)
+.|+++|+.. +..+++..|+|++||+++.|+..++..+|.++++++++++ ..++ ||+-+.+. .+.+....+++.+
T Consensus 124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~g-Wr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG-WISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-chhHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999 9999999999999999999999999999999999999994 4565 99865433 3444455556667
Q ss_pred hccCCcC
Q psy5252 79 FMEDPER 85 (285)
Q Consensus 79 ~~~~~~~ 85 (285)
++|.+++
T Consensus 201 ~LP~~~~ 207 (511)
T TIGR00806 201 FLKRPKR 207 (511)
T ss_pred hCCCCch
Confidence 7775544
No 105
>KOG0253|consensus
Probab=98.76 E-value=3.9e-08 Score=82.25 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=64.9
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|.|.|+ .|...++-.+.-|..+|...+-.. .-..+|.+....+.-.+...+| |||-....+.+..+.+ ...+.++
T Consensus 176 ~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr~~l~~~~~pl~~~a-~f~~w~~ 251 (528)
T KOG0253|consen 176 WGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WRYLLFTSSTPLMFAA-RFLVWVY 251 (528)
T ss_pred HhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHhHHHHHH-HHHhhcc
Confidence 5777888 888889999999999999877666 8889999999999999999896 9998888887666655 4456677
Q ss_pred CCcC
Q psy5252 82 DPER 85 (285)
Q Consensus 82 ~~~~ 85 (285)
|.+|
T Consensus 252 ESpR 255 (528)
T KOG0253|consen 252 ESPR 255 (528)
T ss_pred cCcc
Confidence 7654
No 106
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.9e-07 Score=81.66 Aligned_cols=231 Identities=14% Similarity=0.111 Sum_probs=132.5
Q ss_pred ccccccccchhHHHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLL 75 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l 75 (285)
+++.+....+-.++.+++.+. +||.+..+..+...++|..+...+...+...++ +|+....+.+++.++..+.
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 334444445555666666654 789999999999999998888887777766543 4788778888887777777
Q ss_pred HHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--HHHHHHHH---H----HHHHhcCCCCcchhHHHHHH
Q psy5252 76 ILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--NLNWSIVA---D----MTLYVVLPLRRSTAEAFQIL 146 (285)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~ 146 (285)
+++..+|...+..+. ++..+.+.++++..+++||.+..... .+.+.... . ..++.++..+. ......
T Consensus 203 ~~~~v~ER~~~~~~~-~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l---~~~~~~ 278 (467)
T COG2211 203 CFFNVKERVVETQPT-KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPEL---FAYLLL 278 (467)
T ss_pred HHHHhhcccCccccC-cccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHH---HHHHHH
Confidence 777777654322111 12234566777778889988866332 11121110 0 11223332221 122223
Q ss_pred HhhhccccchhhhhHHHhHHhhhhhcccceeee------eecccc-cc--cccc--cc-ccccccCCcchhhhhccccCC
Q psy5252 147 ISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV------ANAMLP-SS--LAPS--LP-FSSSNSTSLPLVSSLDETAHR 214 (285)
Q Consensus 147 ~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~------~~~~~~-~~--~~~~--~~-~~~~~~~~~~~~~~~~~~~p~ 214 (285)
.....+.+.+.++..++++|+|+|+......++ ..+..+ .. +.+. .. ............++++|.+..
T Consensus 279 ~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDy 358 (467)
T COG2211 279 LASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDY 358 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhH
Confidence 333455555567899999999999876653211 111122 11 1111 11 112234445567888888765
Q ss_pred cc-----h----------h---hhccccchhhhhhhhhhhh
Q psy5252 215 SD-----E----------F---LAHKSDEFLAHKSDEFLAL 237 (285)
Q Consensus 215 ~~-----r----------~---l~~~~~p~~~G~~~~~~~~ 237 (285)
++ | + ++.+++..+.|++.+..|+
T Consensus 359 ge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 359 GEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44 3 1 5567777777777665543
No 107
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.70 E-value=2.3e-07 Score=82.74 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=58.9
Q ss_pred ccccccccchhHHHHhhcccCC--chhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVKD--LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~--~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~ 72 (285)
++|.|...+...++++|++|++ +|..++++++.+.++|..++|.+.+++.+.++ ||+.|.+.++..++.
T Consensus 111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~~F~iaaigm~l~ 181 (493)
T PRK15462 111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMGFGLAAVGMIAG 181 (493)
T ss_pred HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHH
Confidence 3566777788889999999886 79999999999999999999999999998886 999999876644433
No 108
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.59 E-value=9.8e-08 Score=70.08 Aligned_cols=80 Identities=23% Similarity=0.436 Sum_probs=69.1
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+...+...+++.|.+|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.|++.++..++..+...+..|
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4667777788899999999999999999999999999999999999999998875 999999888887777666655555
Q ss_pred C
Q psy5252 82 D 82 (285)
Q Consensus 82 ~ 82 (285)
|
T Consensus 140 ~ 140 (141)
T TIGR00880 140 E 140 (141)
T ss_pred C
Confidence 4
No 109
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.59 E-value=6.3e-08 Score=85.88 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=63.1
Q ss_pred ccccccchhHHHHhhcccCCch--hHHHHHHHHHHhhHHHHHHHHHHHh--hhcc------------CCchHHHHHhhHH
Q psy5252 5 GEASYSTIAPTIISDLFVKDLR--SQMLAFFYFAIPIGSGLGYIVGSTA--FSVM------------GAWPWSLRVTPVL 68 (285)
Q Consensus 5 g~~~~~~~~~~~i~~~~~~~~r--g~~~gi~~~~~~iG~~~g~~l~~~l--~~~~------------g~wr~~f~i~~~~ 68 (285)
+.....++..++++|.+|+++| +.++++++...++|.++|+.++++. .+.+ .+.|..|++.+++
T Consensus 127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~ 206 (477)
T TIGR01301 127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL 206 (477)
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence 3344567778999999999865 6899999999999999999999875 2211 0368899999888
Q ss_pred HHHHHHHHHHhccCCc
Q psy5252 69 GACAVLLILFFMEDPE 84 (285)
Q Consensus 69 ~~~~~~l~~~~~~~~~ 84 (285)
.++..++..+..||.+
T Consensus 207 l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 207 LAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHeeeeeccC
Confidence 8887777777888854
No 110
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.56 E-value=8.1e-07 Score=76.88 Aligned_cols=241 Identities=10% Similarity=-0.010 Sum_probs=122.5
Q ss_pred cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcccc
Q psy5252 10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAE 89 (285)
Q Consensus 10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~ 89 (285)
.|..-+++.++- ++.+.=.|-..+-.++|.+++..++|.+.+. +-+..||+....+++..++..+.-|+.+++...
T Consensus 122 ~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~ 197 (412)
T PF01306_consen 122 VPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEV 197 (412)
T ss_dssp HHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-S
T ss_pred chHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhh
Confidence 344444444433 3444556677788899999999999999984 257788887766666554433332232222111
Q ss_pred Cc--cccccccHHHHHHHHhhhhhhHHHHHH--HHHHH--HHHH--HH---HhcCCCCcch-hHHHHHHHhhhccccchh
Q psy5252 90 GR--VTEERTSFGEDIRALCKNHRETWIFLN--LNWSI--VADM--TL---YVVLPLRRST-AEAFQILISHAFGDAGSP 157 (285)
Q Consensus 90 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~--~~---~~~~~~~~~~-~~~~~~~~~~~~g~~~g~ 157 (285)
.+ ++++++...++...++|+|++|.+..+ ..+.. .++. .. ...+....+. ..+.. .....+.-++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l-~s~~v~~E~~~m 276 (412)
T PF01306_consen 198 ADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYL-WSVQVFLEALMM 276 (412)
T ss_dssp STTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHH-HHHHHHHHHHHH
Confidence 11 111111123456678899998873321 11111 1110 01 1222222232 33433 333334445556
Q ss_pred hhhHHHhHHhhhhhcccceee-------eeecccccc-ccccccccccccC----CcchhhhhccccCCcch--------
Q psy5252 158 YLIGLLSEMFRHSLQLGASTL-------VANAMLPSS-LAPSLPFSSSNST----SLPLVSSLDETAHRSDE-------- 217 (285)
Q Consensus 158 ~~~G~l~d~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~r-------- 217 (285)
.+..++.+|+|.|+.+..... ..++...+. +...=.+ ++.. .....-++.+.+|++..
T Consensus 277 ~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klL--H~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~ 354 (412)
T PF01306_consen 277 FFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLL--HALEFPLLLVAAFKYITAHFDKRLSATLYLVGF 354 (412)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHH
T ss_pred HHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Confidence 688899999999875543211 111111111 1000000 0000 01122346677887775
Q ss_pred ----hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 218 ----FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 218 ----~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
.++..+.+.+.|.+.|+.|++.++++.+.+.++..++...
T Consensus 355 ~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 355 QFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 1556788999999999999998888777766555555444
No 111
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.55 E-value=4.7e-08 Score=83.30 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=149.7
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHH--HHhhh----------------ccCCchHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVG--STAFS----------------VMGAWPWSLRV 64 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~--~~l~~----------------~~g~wr~~f~i 64 (285)
.++.....+.-.+++.|..++++-++..++-.....+|..+.-.+. ..+.. .. +-|..+.+
T Consensus 126 ~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~ri~~~l 204 (438)
T COG2270 126 SIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGE-DVRITGLL 204 (438)
T ss_pred HHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccc-cchhHHHH
Confidence 4556667778889999999999999999888888888877766654 11111 12 36888888
Q ss_pred hhHHHHHHHHHHHHhccCCcCcc-ccCcc-ccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHh
Q psy5252 65 TPVLGACAVLLILFFMEDPERGE-AEGRV-TEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYV 131 (285)
Q Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 131 (285)
.++-.++..+.++...+++++.. +.++. ...-++.++++++..+++.+..+.. .......+....++
T Consensus 205 ~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~g 284 (438)
T COG2270 205 AALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLG 284 (438)
T ss_pred HHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 88877777777777777766432 11111 1122335567777877776644221 11112222222344
Q ss_pred cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-------eecccccc--ccccccccc-cccCC
Q psy5252 132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAMLPSS--LAPSLPFSS-SNSTS 201 (285)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~-~~~~~ 201 (285)
++..+. .+.....+ +..++|.++.|++.||++.|++.....+. ..+..... +..+++.+. .++..
T Consensus 285 ls~~~l----ll~g~~~~-vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 285 LSSTEL----LLIGIALS-VVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred ccHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 433222 22222222 44566788999999999999655442211 11111222 333444432 23444
Q ss_pred cchhhhhccccCCcch--h---------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHH
Q psy5252 202 LPLVSSLDETAHRSDE--F---------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 202 ~~~~~~~~~~~p~~~r--~---------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 257 (285)
+..-++..+.+|+++. + .+..+||++.+.+.+.+| .+..+....++..++.+.+..
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence 4456778899999875 2 234799999999999877 677777666666666655443
No 112
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.54 E-value=1.7e-07 Score=82.57 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=73.3
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhccC-----CchHHHHHhhHHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVMG-----AWPWSLRVTPVLGACAVLL 75 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~g-----~wr~~f~i~~~~~~~~~~l 75 (285)
.|++.+...+....+++|++|+++|++++|+.+ ....+|..+||+++|.+.++.+ |||..|.+.+++.++..++
T Consensus 318 ~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l 397 (418)
T TIGR00889 318 YGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVL 397 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence 466677778888999999999999999999997 6788999999999999998743 3999999999988888888
Q ss_pred HHHhccCCcCc
Q psy5252 76 ILFFMEDPERG 86 (285)
Q Consensus 76 ~~~~~~~~~~~ 86 (285)
..++++|++++
T Consensus 398 ~~~~~~~~~~~ 408 (418)
T TIGR00889 398 FMIFFKYSHNA 408 (418)
T ss_pred HHHHhCCcccC
Confidence 88888876543
No 113
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.37 E-value=1.6e-07 Score=83.69 Aligned_cols=139 Identities=12% Similarity=-0.015 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHh-hhhhcccceeee--ee---cccc--c-
Q psy5252 116 FLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMF-RHSLQLGASTLV--AN---AMLP--S- 186 (285)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~-~~~~~~~~~~~~--~~---~~~~--~- 186 (285)
+....+.+.+.....+.++.+.+...+... ....++++++|+++||+ |||+......+. ++ .... .
T Consensus 26 Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~-----~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~ 100 (493)
T PRK15462 26 YGMRALLILYLTNQLKYDDNHAYELFSAYC-----SLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHP 100 (493)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 334456666655555666555544444332 44455688999999999 998765542211 11 1111 1
Q ss_pred c-ccccc-cccccccCC-cchhhhhccccCCc--ch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHH
Q psy5252 187 S-LAPSL-PFSSSNSTS-LPLVSSLDETAHRS--DE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVL 250 (285)
Q Consensus 187 ~-~~~~~-~~~~~~~~~-~~~~~~~~~~~p~~--~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~ 250 (285)
. +..+. ....+.+.. +...+++.|.+|++ .| .+|..++|.+.|++.+..||+++|..+++.+++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 1 11111 111233444 33578889999986 35 166789999999999999999999887776666
Q ss_pred HHHHHHHHh
Q psy5252 251 GGIFFLLGS 259 (285)
Q Consensus 251 ~~~~~~~~~ 259 (285)
+.+.+....
T Consensus 181 ~li~~~~~~ 189 (493)
T PRK15462 181 GLVIFLCGN 189 (493)
T ss_pred HHHHHHHhh
Confidence 665554433
No 114
>KOG4686|consensus
Probab=98.37 E-value=4.2e-08 Score=79.28 Aligned_cols=243 Identities=12% Similarity=0.056 Sum_probs=126.9
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCc-----hHH---HHHhhHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAW-----PWS---LRVTPVLGACA 72 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~w-----r~~---f~i~~~~~~~~ 72 (285)
+.|+|.-..-++-++++..||..||.+.++|++.+..-+|..+-..+.+++.+..+.. +.. ....+...+..
T Consensus 145 ~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~ 224 (459)
T KOG4686|consen 145 LFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQ 224 (459)
T ss_pred eeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3577777788888999999999999999999999999999988888888887754310 000 11111111111
Q ss_pred ---HHHHHHhccCCcCc---cccCccccccccHHHHHHHHhhhhhhHH-----HHHHHHHHHH------HHHHHHhcCCC
Q psy5252 73 ---VLLILFFMEDPERG---EAEGRVTEERTSFGEDIRALCKNHRETW-----IFLNLNWSIV------ADMTLYVVLPL 135 (285)
Q Consensus 73 ---~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~~~ 135 (285)
+.+..-+. |.+.+ +.++....+..+. .+.+. + .|.+|. ......|.|. +....++.++.
T Consensus 225 slical~lg~~-D~rAerilh~e~g~~Ge~pkL-tdv~~-f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~ 300 (459)
T KOG4686|consen 225 SLICALSLGLS-DDRAERILHLEEGFLGEEPKL-TDVNT-F-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAV 300 (459)
T ss_pred HHHHHHHhhhh-hhHHHHHHhhhcCcccCCccc-ccccc-c-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChh
Confidence 11111111 11111 1111110011011 11110 1 233433 2223445543 44455777777
Q ss_pred CcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--------eecccccc----ccccccccccccCCcc
Q psy5252 136 RRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--------ANAMLPSS----LAPSLPFSSSNSTSLP 203 (285)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~ 203 (285)
..+...+... .+.... .++.|.++||.|++........+ +.|...+. ..+++... ...-.
T Consensus 301 ~a~~i~s~vy----~Isav~-spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsys---llAcs 372 (459)
T KOG4686|consen 301 SAGNILSTVY----GISAVL-SPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYS---LLACS 372 (459)
T ss_pred hccchhhhhh----hhhhhh-hhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHH---HHHHH
Confidence 7776655444 344444 55899999999998543331111 11111111 11111110 01111
Q ss_pred hhhhhccccCCcch-----------hhhccccchhhhhhhhhhh-h---HHHHHHHHHHHHHHHHHH
Q psy5252 204 LVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLA-L---QYALFITSFIEVLGGIFF 255 (285)
Q Consensus 204 ~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 255 (285)
....++.++|+++- .+|-++.|.+.|.+.|..| + +.-|+.+..+.+++..+.
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil 439 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL 439 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 34567777777774 3777999999999999766 3 233344444444444333
No 115
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.34 E-value=8.3e-08 Score=85.96 Aligned_cols=136 Identities=9% Similarity=-0.077 Sum_probs=81.0
Q ss_pred HHHHHHHHHHH--HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHH-hhhhhcccceeeeee-----ccccc-c--
Q psy5252 119 LNWSIVADMTL--YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEM-FRHSLQLGASTLVAN-----AMLPS-S-- 187 (285)
Q Consensus 119 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~-~~~~~~~~~~~~~~~-----~~~~~-~-- 187 (285)
..+.+.+.... .+.+..+.+...+.. .++..++++++|+++|| +|||+.+........ +...+ .
T Consensus 30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~-----~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~ 104 (475)
T TIGR00924 30 QGILAVYLVQQAGLGFSQEQAFIIFGAY-----SALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDL 104 (475)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHH-----HHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhH
Confidence 33444443332 344444444443333 35566778899999999 899987665331111 11111 1
Q ss_pred cccc-ccccccccCC-cchhhhhccccCCcc---h-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHH
Q psy5252 188 LAPS-LPFSSSNSTS-LPLVSSLDETAHRSD---E-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLG 251 (285)
Q Consensus 188 ~~~~-~~~~~~~~~~-~~~~~~~~~~~p~~~---r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~ 251 (285)
+..+ .+...+.+.. +...++++|.+|+++ | .+|..+||.+.|.+.++.||++.|...++.++++
T Consensus 105 ~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 2122 1222333433 445678888888754 4 1677899999999999999999998877666666
Q ss_pred HHHHHHHh
Q psy5252 252 GIFFLLGS 259 (285)
Q Consensus 252 ~~~~~~~~ 259 (285)
.+.+....
T Consensus 185 ~l~~~~~~ 192 (475)
T TIGR00924 185 LLTFFAGR 192 (475)
T ss_pred HHHHHHcc
Confidence 55544433
No 116
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.31 E-value=1.4e-06 Score=76.18 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=66.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+..++.....+.|.+|+|+|++++|+++....+|..+++++.+.+.+..+ |+..|++.+++.++..++...+.+
T Consensus 312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677777778878888899999999999999999999999999999999999886 999999988887776655544433
No 117
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.28 E-value=2.1e-07 Score=83.52 Aligned_cols=103 Identities=9% Similarity=0.008 Sum_probs=65.0
Q ss_pred hhhhhHHHhHH-hhhhhcccceeeeeec-----ccc-c--c-cccccc-ccccccC-CcchhhhhccccCCcch------
Q psy5252 156 SPYLIGLLSEM-FRHSLQLGASTLVANA-----MLP-S--S-LAPSLP-FSSSNST-SLPLVSSLDETAHRSDE------ 217 (285)
Q Consensus 156 g~~~~G~l~d~-~~~~~~~~~~~~~~~~-----~~~-~--~-~~~~~~-~~~~~~~-~~~~~~~~~~~~p~~~r------ 217 (285)
.++++|+++|| +|||+........... ... . . +..+.. ...+.+. .+...+++.|.+|+++|
T Consensus 66 ~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~ 145 (489)
T PRK10207 66 LISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAF 145 (489)
T ss_pred HHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcch
Confidence 35689999999 9999876653311111 111 1 1 111111 1223333 34457889999988752
Q ss_pred -------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252 218 -------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 218 -------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
.+|..++|.++|++.++.||+++|++.++..+++.+.+...
T Consensus 146 ~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 146 TLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 16678999999999999999999988766555555444443
No 118
>KOG2615|consensus
Probab=98.26 E-value=2.1e-07 Score=78.23 Aligned_cols=74 Identities=23% Similarity=0.400 Sum_probs=53.0
Q ss_pred chhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh---ccCCchHHH--HHhhHHHHHHHHHHHHhccCCc
Q psy5252 11 TIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS---VMGAWPWSL--RVTPVLGACAVLLILFFMEDPE 84 (285)
Q Consensus 11 ~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~---~~g~wr~~f--~i~~~~~~~~~~l~~~~~~~~~ 84 (285)
..+.++++|.+++|+|++.|+.+.....+|.++||++++++.+ ..++....+ ++..+++........+++|||-
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4567999999999999999999999999999999999999998 333232222 1222222222334445778864
No 119
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.21 E-value=2.5e-06 Score=75.17 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=69.0
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
|++.+...+...+++.|.+|+++|++++|+++....+|..+|+.+.+.+.+.++ ++..+++.+...++..++....+++
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhccc
Confidence 555555667777899999999999999999999999999999999999999886 8999988887777766666667676
Q ss_pred CcCc
Q psy5252 83 PERG 86 (285)
Q Consensus 83 ~~~~ 86 (285)
.++.
T Consensus 402 ~~~~ 405 (417)
T PRK10489 402 LRRF 405 (417)
T ss_pred cccc
Confidence 5543
No 120
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.16 E-value=3.7e-07 Score=78.74 Aligned_cols=127 Identities=9% Similarity=0.008 Sum_probs=74.9
Q ss_pred HHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--cccc-cccccc
Q psy5252 127 MTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAPS-LPFSSS 197 (285)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~~-~~~~~~ 197 (285)
...++.++.+.+...+... ++..++.++.|+++||++||+......+. ++ ... ++. +.+. .+...+
T Consensus 22 ~~~~g~s~~~~g~~~~~~~-----~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 96 (379)
T TIGR00881 22 VEEIGLSKTDLGLLLSSFS-----IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIF 96 (379)
T ss_pred HHHhCCCHhHHHHHHHHHH-----HHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3345666666555544333 56666788999999999999765543211 11 111 111 1111 111122
Q ss_pred -ccCCcchhhhhccccCCcchh-----------hhccccc-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252 198 -NSTSLPLVSSLDETAHRSDEF-----------LAHKSDE-FLAHKSDEFLALQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 198 -~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
........+.+.|.+|+++|. ++..++| .+.+.+.+..+|+..+++.+++.++..+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 97 QGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLL 170 (379)
T ss_pred ccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhee
Confidence 233445577889999998871 5557777 466667777889998887776665555444433
No 121
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.15 E-value=6.7e-07 Score=80.64 Aligned_cols=137 Identities=9% Similarity=-0.086 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHH-hhhhhcccceeeee--e---cccc-c-c--
Q psy5252 118 NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEM-FRHSLQLGASTLVA--N---AMLP-S-S-- 187 (285)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~-~~~~~~~~~~~~~~--~---~~~~-~-~-- 187 (285)
...|.+.+....++.+..+.+...+... ......++++|+++|| +|+|+......+.. + .... . .
T Consensus 40 ~~~~l~~yl~~~lg~s~~~a~~~~~~~~-----~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~ 114 (500)
T PRK09584 40 LQGIMAVYLVKQLGMSEADSITLFSSFS-----ALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGI 114 (500)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 3445555554455555444333322221 1122224589999999 59987655432111 1 1111 1 1
Q ss_pred cccc-ccccccccCC-cchhhhhccccCCcc-h------------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252 188 LAPS-LPFSSSNSTS-LPLVSSLDETAHRSD-E------------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG 252 (285)
Q Consensus 188 ~~~~-~~~~~~~~~~-~~~~~~~~~~~p~~~-r------------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~ 252 (285)
+.++ .....+.+.. ....+.+.|.+|++. | .+|..++|.+.|++.|..||++.|.+.++..+++.
T Consensus 115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 1111 1122233433 334578889988653 2 15668999999999999999999998776666666
Q ss_pred HHHHHHh
Q psy5252 253 IFFLLGS 259 (285)
Q Consensus 253 ~~~~~~~ 259 (285)
+.+....
T Consensus 195 i~~~~~~ 201 (500)
T PRK09584 195 VNFAFCQ 201 (500)
T ss_pred HHHHHhH
Confidence 5555443
No 122
>PRK12382 putative transporter; Provisional
Probab=98.12 E-value=5.7e-06 Score=72.22 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=68.0
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+...+...+.+.|.+|+|+|++++|++++...+|..+++.+.+.+.++.+ |+..|.+.+++.++..++..+..+
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 390 (392)
T PRK12382 312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTILSFR 390 (392)
T ss_pred HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHhhcc
Confidence 4666777778888889999999999999999999999999999999999999886 999999998888777766554443
No 123
>PRK10054 putative transporter; Provisional
Probab=98.09 E-value=5.3e-07 Score=78.93 Aligned_cols=130 Identities=8% Similarity=0.022 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--ee---cccccc---ccccc
Q psy5252 121 WSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLPSS---LAPSL 192 (285)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~~~---~~~~~ 192 (285)
+.+.+....++.++.+.+...+... ++.+++.++.|+++||+++|+.+...... +. +...+. +.+..
T Consensus 29 ~l~~~l~~~~g~s~~~~g~~~s~~~-----~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (395)
T PRK10054 29 FMTIYLSRQYSLSVDLIGYAMTIAL-----TIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFF 103 (395)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444445666555555544332 44455677999999999999765442211 11 111111 11111
Q ss_pred -cccccccCCcc-hhhhhccccCCcch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 193 -PFSSSNSTSLP-LVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 193 -~~~~~~~~~~~-~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
......+...+ ..+...|..|+++| .+|..++|.+.|.+.+ .+|+..|...+++.++..+...
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 104 ALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence 11111112222 45667899988877 1666899999998876 6899999887777666654443
No 124
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.08 E-value=4.6e-07 Score=78.49 Aligned_cols=125 Identities=14% Similarity=-0.084 Sum_probs=74.9
Q ss_pred HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--eec---cc-ccc--cccc-ccccccc
Q psy5252 128 TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA---ML-PSS--LAPS-LPFSSSN 198 (285)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~---~~-~~~--~~~~-~~~~~~~ 198 (285)
.+++.++.+.+...+.. .++..++.+..|+++||+|||+........ ... .. ++. +... .+...+.
T Consensus 19 ~~~~~s~~~~g~~~s~~-----~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~ 93 (368)
T TIGR00903 19 EDIDVSKEELGLLAITY-----PAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQ 93 (368)
T ss_pred HHhCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHh
Confidence 34556665555554433 366677788999999999988654332111 110 11 111 1111 1111112
Q ss_pred cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
+...+....++|.+|+++|. +|..++|.+.+++.++.|||..|...+++.++..+++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 94 PFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 22333445568999998882 566888999999999999999998877766665554444
No 125
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.08 E-value=2.2e-06 Score=73.22 Aligned_cols=128 Identities=9% Similarity=0.024 Sum_probs=86.0
Q ss_pred cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eecccccc-ccccccc-c---ccccCC
Q psy5252 132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLPSS-LAPSLPF-S---SSNSTS 201 (285)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~-~---~~~~~~ 201 (285)
++..+.|...+... +...++..+.|.++||.+.|..+....++ +.+.+.+. ..+..++ . +++.-.
T Consensus 61 lsk~~lG~i~s~f~-----i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gw 135 (448)
T COG2271 61 LSKTQLGILGSAFS-----ITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGW 135 (448)
T ss_pred CCHHHHHHHHHHHH-----HHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 55555555544443 77788899999999999999654442211 11112222 1111111 1 234555
Q ss_pred cchhhhhccccCCcch-----------hhhccccchhh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5252 202 LPLVSSLDETAHRSDE-----------FLAHKSDEFLA--HKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQ 264 (285)
Q Consensus 202 ~~~~~~~~~~~p~~~r-----------~l~~~~~p~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
+|..-.+..-+|+++| .+|+++.|.+. +.+.++.+|+.+|++.+++.++.+++.+...+..++
T Consensus 136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 6678888999999999 27788888888 899999999999999999888887777766554443
No 126
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.06 E-value=5.5e-06 Score=72.56 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=69.6
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+...|...+++.+..|+++|++.+++++....+|..+||.+++.+.+..+ |+..|++.+++.++..++..+..+
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 321 LGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888999999999999999999999999999999999999999886 999999999888887766655444
Q ss_pred C
Q psy5252 82 D 82 (285)
Q Consensus 82 ~ 82 (285)
+
T Consensus 400 ~ 400 (408)
T PRK09874 400 R 400 (408)
T ss_pred H
Confidence 3
No 127
>PTZ00207 hypothetical protein; Provisional
Probab=98.03 E-value=1.3e-05 Score=72.91 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=66.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|+|.+...+.+...+.+||| ++||+++|+...+.++|.++...+...+.. . +|+..|++.+++.++..++...+++
T Consensus 130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~-~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D-NTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 578888888999999999996 789999999999999999865554444443 2 4999999999999998888888888
Q ss_pred CCcC
Q psy5252 82 DPER 85 (285)
Q Consensus 82 ~~~~ 85 (285)
+++.
T Consensus 207 ~p~~ 210 (591)
T PTZ00207 207 LPPF 210 (591)
T ss_pred CCcc
Confidence 7753
No 128
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.95 E-value=3.4e-06 Score=73.81 Aligned_cols=116 Identities=9% Similarity=-0.085 Sum_probs=70.3
Q ss_pred HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeeee-----ccccc-c--c-ccccccccccc-
Q psy5252 130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----AMLPS-S--L-APSLPFSSSNS- 199 (285)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~~~~~-~--~-~~~~~~~~~~~- 199 (285)
++.++.+.+...+.. .++..++.++.|+++||++||+.+........ ..... . + ..-.+...+.+
T Consensus 50 ~g~s~~~~g~~~~~~-----~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 124 (394)
T PRK10213 50 LGISEGVAGQSVTVT-----AFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGG 124 (394)
T ss_pred cCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHH
Confidence 445555544444333 35556678899999999999976655321111 11111 1 1 11112222222
Q ss_pred CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHH
Q psy5252 200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVL 250 (285)
Q Consensus 200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~ 250 (285)
......+.+.|.+|+++|. ++..++|.+++.+.+..||++.|+..+++.++
T Consensus 125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~ 186 (394)
T PRK10213 125 FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL 186 (394)
T ss_pred HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 2333466778999988871 55689999999999999999999876654443
No 129
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.94 E-value=9.8e-05 Score=67.18 Aligned_cols=81 Identities=22% Similarity=0.369 Sum_probs=59.0
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|+|.|... .....++|..|.|.|....++......+....++.++..+..+. +|||.|++..+...+.+++..++..
T Consensus 141 ~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WRw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 141 YGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWRWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred HHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-CcchHHHHHHHHHHHHHHHHHHHhC
Confidence 466655554 44566899999999998888777766666667788887776655 5999999998887776666655554
Q ss_pred CCc
Q psy5252 82 DPE 84 (285)
Q Consensus 82 ~~~ 84 (285)
.|+
T Consensus 219 PP~ 221 (599)
T PF06609_consen 219 PPP 221 (599)
T ss_pred CCc
Confidence 443
No 130
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.94 E-value=4.8e-06 Score=72.65 Aligned_cols=118 Identities=8% Similarity=0.034 Sum_probs=70.2
Q ss_pred HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--e---eccc-ccc--ccc-ccccccc-
Q psy5252 128 TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NAML-PSS--LAP-SLPFSSS- 197 (285)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~~~-~~~--~~~-~~~~~~~- 197 (285)
..++.++.+.+...+.. .++..++.++.|.++||+|||+......+. + .... ++. +.. -.+.+.+
T Consensus 40 ~~~~~s~~~~g~~~~~~-----~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 114 (405)
T TIGR00891 40 GEFGLTTVDAASLISAA-----LISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGM 114 (405)
T ss_pred HHhCCChhhHHHHHHHH-----HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 34556666655554433 366677788999999999999866543211 0 0111 111 111 1111112
Q ss_pred ccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh--hHHHHHHHHHHHHH
Q psy5252 198 NSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA--LQYALFITSFIEVL 250 (285)
Q Consensus 198 ~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~--~~~~~~~~~~~~~~ 250 (285)
........+.+.|.+|+++|. +|..++|.+.+.+.+..+ |+..+.+..+..++
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~ 180 (405)
T TIGR00891 115 GGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF 180 (405)
T ss_pred hhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 233344567788999998872 556788888888887766 99888765444333
No 131
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.93 E-value=1.5e-05 Score=70.96 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=65.0
Q ss_pred cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcC
Q psy5252 10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPER 85 (285)
Q Consensus 10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~ 85 (285)
.+....+++|.+|+++|++++++.+...++|..+++.+.+.+.+..+ |++.|++.++++++..++..++.||+++
T Consensus 401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHHHheecccCCC
Confidence 45666778999999999999999999999999999999999998886 9999999998888887777667776553
No 132
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.92 E-value=7.5e-07 Score=76.48 Aligned_cols=107 Identities=7% Similarity=0.011 Sum_probs=67.9
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeee-------eeccc--c--cc--cccc-ccccccc-cCCcchhhhhccccCC
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAML--P--SS--LAPS-LPFSSSN-STSLPLVSSLDETAHR 214 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~--~--~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~p~ 214 (285)
.++..++.++.|+++||++||+........ ..+.. . +. +... .+...+. .......+++.|.+|+
T Consensus 44 ~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 123 (365)
T TIGR00900 44 MLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE 123 (365)
T ss_pred HHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 366667788999999999999876552211 11111 0 11 1111 1111122 2233456888999999
Q ss_pred cchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 215 SDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 215 ~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
++|. ++..++|.+.+.+.+..+|+..++..++..++..+...
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 124 EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 8871 56689999999999999999999877666555544433
No 133
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.90 E-value=2.5e-05 Score=68.33 Aligned_cols=229 Identities=10% Similarity=0.019 Sum_probs=106.8
Q ss_pred ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHH-HHHhhhccC--CchHHHHHhhHHHHHHHHHHHHhccCC
Q psy5252 7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIV-GSTAFSVMG--AWPWSLRVTPVLGACAVLLILFFMEDP 83 (285)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l-~~~l~~~~g--~wr~~f~i~~~~~~~~~~l~~~~~~~~ 83 (285)
.+..|...++.-++.. ++++-.|-...-.++|.+++... ...+....+ +....+++.+...++.. ...+.+|+.
T Consensus 106 ~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l~lp~~ 182 (400)
T PF03825_consen 106 SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFALFLPKT 182 (400)
T ss_pred ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHHHhCCCC
Confidence 3445566666666664 44555666677777777777544 233333221 13345666665554443 333455655
Q ss_pred cCccccCccccccccHHHHHHHHhhhhhhHHHHHHHH-----HHHHHHH-HHHhcCCC-CcchhHHHHHHHhhhccccch
Q psy5252 84 ERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNLN-----WSIVADM-TLYVVLPL-RRSTAEAFQILISHAFGDAGS 156 (285)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g 156 (285)
++++.++++ .++....+...++|+|.+..+..... ....+.. ..+..+.+ ..+...+..+. .+.+.-++-
T Consensus 183 ~~~~~~~~~--~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~-l~~~aEi~~ 259 (400)
T PF03825_consen 183 PPKRSAKES--VKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWA-LGVVAEIPF 259 (400)
T ss_pred ccccccCCC--cccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHH-HHHHHHHHH
Confidence 422211111 11112233346788888765322111 1111111 11221112 11122222221 222334444
Q ss_pred hhhhHHHhHHhhhhhcccceee-------eeecccccc-c-cccccc--cccccC----CcchhhhhccccCCcchh---
Q psy5252 157 PYLIGLLSEMFRHSLQLGASTL-------VANAMLPSS-L-APSLPF--SSSNST----SLPLVSSLDETAHRSDEF--- 218 (285)
Q Consensus 157 ~~~~G~l~d~~~~~~~~~~~~~-------~~~~~~~~~-~-~~~~~~--~~~~~~----~~~~~~~~~~~~p~~~r~--- 218 (285)
-...+++..|++.++.+..... ..++...+. . .....+ ..++.+ ......++.+.+|++.|.
T Consensus 260 f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q 339 (400)
T PF03825_consen 260 FFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQ 339 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 4466667777766654433221 111111111 1 111111 011222 222346677999999981
Q ss_pred ---------hhccccchhhhhhhhhhhhHHHH
Q psy5252 219 ---------LAHKSDEFLAHKSDEFLALQYAL 241 (285)
Q Consensus 219 ---------l~~~~~p~~~G~~~~~~~~~~~~ 241 (285)
+|..+|..++|++.|+.|.+..+
T Consensus 340 ~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 340 GLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 67789999999999998866544
No 134
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.89 E-value=1.9e-06 Score=76.88 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=64.3
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVL 74 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~ 74 (285)
.|++.+...+...+++.|.+|++++++.+|++++..++|..+||.+++.+.+..++|+..|++.+++.++..+
T Consensus 343 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 343 FGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 4677888888999999999999999999999999999999999999999998775699999988877665543
No 135
>TIGR00895 2A0115 benzoate transport.
Probab=97.89 E-value=4.3e-06 Score=72.66 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=66.9
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeeeee-----cc-cccc--cccc-cccccc-ccCCcchhhhhccccCCcchh-
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----AM-LPSS--LAPS-LPFSSS-NSTSLPLVSSLDETAHRSDEF- 218 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~~-~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~r~- 218 (285)
.++..++.++.|+++||++||+.......... .. .+.. +.+. .+...+ ........+.+.|.+|++.|.
T Consensus 62 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~ 141 (398)
T TIGR00895 62 LIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGT 141 (398)
T ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhch
Confidence 36667778899999999999976654221100 11 1111 1111 111122 233445578889999988872
Q ss_pred ----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 219 ----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 219 ----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
++..++|.+.|.+.+..+|+..+++.+++..+..++..
T Consensus 142 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (398)
T TIGR00895 142 AVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189 (398)
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence 56688999999999999999888876555544444333
No 136
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.88 E-value=2.2e-05 Score=73.65 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=64.7
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
|...++.++...++++|++|.++|++++|+.++...+|.+++|.+++.+.+. + ...+|++.+++.++..++. .++||
T Consensus 659 g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~-~~~pf~i~a~~lll~~ll~-~~LPE 735 (742)
T TIGR01299 659 GGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-T-KAAPILFASAALACGGLLA-LKLPD 735 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHHHH-HhCCC
Confidence 4455667788889999999999999999999999999999999999988874 2 5678888877776665444 46677
Q ss_pred CcC
Q psy5252 83 PER 85 (285)
Q Consensus 83 ~~~ 85 (285)
++.
T Consensus 736 T~~ 738 (742)
T TIGR01299 736 TRG 738 (742)
T ss_pred Ccc
Confidence 653
No 137
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.88 E-value=4.2e-05 Score=66.95 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=69.4
Q ss_pred cccccccccchhHHHHhhccc-CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFV-KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
.|++.+...|.......+..+ ++++++.+|+.+....++..++|.+.+++.+..|+|...|.+..+..++..+....+.
T Consensus 302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 366777777877777777775 5789999999999999999999999999999887788999988888777776666666
Q ss_pred cCCcCc
Q psy5252 81 EDPERG 86 (285)
Q Consensus 81 ~~~~~~ 86 (285)
||++++
T Consensus 382 ~~~~~~ 387 (393)
T PRK09705 382 PARFPQ 387 (393)
T ss_pred cccccc
Confidence 766543
No 138
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.87 E-value=1.6e-06 Score=75.13 Aligned_cols=124 Identities=13% Similarity=0.044 Sum_probs=75.5
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--eec---cc-ccc--cccc-cccccc-c
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA---ML-PSS--LAPS-LPFSSS-N 198 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~---~~-~~~--~~~~-~~~~~~-~ 198 (285)
+++.++.+.+...+.. .++..++.++.|+++||++||+........ ++. .. +.. +... .+...+ .
T Consensus 34 ~~g~s~~~~g~~~~~~-----~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 108 (385)
T TIGR00710 34 DLSTPASIVQMTLTLY-----LLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGAS 108 (385)
T ss_pred HhCCCHHHHHHHHHHH-----HHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchh
Confidence 3455554444444433 366677788999999999999766542211 111 11 111 1111 111112 2
Q ss_pred cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
.......+.+.|.+|+++|. ++..++|.+.|.+.++.+|+..++..+++.++..+....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 109 AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 23344567888999998871 555789999999999999999998777666665554443
No 139
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.87 E-value=2.5e-05 Score=68.45 Aligned_cols=79 Identities=10% Similarity=0.054 Sum_probs=61.7
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
|++.+...+...+++.|.+|+++|++.+|+.+....+|..++|.+.+.+.++.++|...+++.....++..++.+...+
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445556677888999999999999999999999999999999999999987655676776666665555544444333
No 140
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.87 E-value=3.5e-06 Score=74.16 Aligned_cols=124 Identities=9% Similarity=-0.004 Sum_probs=72.6
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeeee-----ccc-ccc--c-ccccccccccc
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----AML-PSS--L-APSLPFSSSNS 199 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~~~-~~~--~-~~~~~~~~~~~ 199 (285)
+++.+..+.+...+.. .++..++.++.|+++||+|||+......+... ... ++. + ..-++.+.+.+
T Consensus 37 ~~~~s~~~~g~~~s~~-----~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 111 (412)
T TIGR02332 37 DLGLSATMFGLAATLF-----YAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEA 111 (412)
T ss_pred hcCCCHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 3444544544444433 36666778899999999999986654221111 111 111 1 11112222223
Q ss_pred CCcc-hhhhhccccCCcchh-----------hhccccchhhhhhhh------hhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 200 TSLP-LVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDE------FLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 200 ~~~~-~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
...| ....+.|.+|+++|. +|..++|.+.+++.+ ..|||+.|.+.++..++..++..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 112 GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 3334 346688999998872 456788888888764 468999998876666555444433
No 141
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.86 E-value=5.6e-07 Score=76.93 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=75.7
Q ss_pred HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee--eee---ccc-ccc--cc-cccccccc-cc
Q psy5252 130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL--VAN---AML-PSS--LA-PSLPFSSS-NS 199 (285)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~~---~~~-~~~--~~-~~~~~~~~-~~ 199 (285)
++.++.+.+...+.. .++..++.++.|+++||+|+|+......+ .++ ..+ .+. +. ...+...+ ..
T Consensus 27 ~~~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 101 (352)
T PF07690_consen 27 LGLSPSQIGLLFSAF-----FLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF 101 (352)
T ss_dssp STTTSHCHHHHHHHH-----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence 444555555544433 35566778899999999999985554221 111 011 221 11 11112222 23
Q ss_pred CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5252 200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIF 254 (285)
Q Consensus 200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (285)
........+.|.+|+++|. ++..++|.+.+.+.+..+|++.+++.+++.++..++
T Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 3344577889999998871 667899999999999999999999888887777664
No 142
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.85 E-value=4.8e-05 Score=66.57 Aligned_cols=83 Identities=14% Similarity=0.358 Sum_probs=68.2
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHH-HhhHHHHHHHHHHHhhhccC-----CchHHHHHhhHHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFA-IPIGSGLGYIVGSTAFSVMG-----AWPWSLRVTPVLGACAVLL 75 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~-~~iG~~~g~~l~~~l~~~~g-----~wr~~f~i~~~~~~~~~~l 75 (285)
.|+..+.+++++..++.+.+|+|.|+++.++++.. ..+|..+|..++|++.+.++ +|...+.+.+++.++..++
T Consensus 311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999999999999865 67999999999999999875 2445566677777777767
Q ss_pred HHHhccCCc
Q psy5252 76 ILFFMEDPE 84 (285)
Q Consensus 76 ~~~~~~~~~ 84 (285)
..++.||++
T Consensus 391 f~~~fk~~~ 399 (400)
T PF03825_consen 391 FVILFKPKH 399 (400)
T ss_pred HHhhccCCC
Confidence 767766653
No 143
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.84 E-value=3.1e-06 Score=72.96 Aligned_cols=122 Identities=14% Similarity=0.056 Sum_probs=67.9
Q ss_pred HHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee-------eeecccccc--cccc-ccccc
Q psy5252 127 MTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL-------VANAMLPSS--LAPS-LPFSS 196 (285)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~-------~~~~~~~~~--~~~~-~~~~~ 196 (285)
...++.++.+.+...+.. .++..++.++.|+++||+|+|+......+ ...+...+. +... .+...
T Consensus 29 ~~~~~~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~ 103 (366)
T TIGR00886 29 KDDLGLSTAQLGNLVAVP-----VLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGI 103 (366)
T ss_pred HHHhCCCHHHhhHhhHHH-----HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345566666655554433 36677778899999999999976654221 111111021 1111 11122
Q ss_pred cccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhh----------hhhhHHHH-HHHHHHHHHHHH
Q psy5252 197 SNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDE----------FLALQYAL-FITSFIEVLGGI 253 (285)
Q Consensus 197 ~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~----------~~~~~~~~-~~~~~~~~~~~~ 253 (285)
+.+...+....+.|.+|+++|. +|..+++.+.+.+.+ +.+|++.+ ...+++..+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 182 (366)
T TIGR00886 104 AGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL 182 (366)
T ss_pred hchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence 2333445677888999998871 344566666665554 23788888 333444333333
No 144
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.84 E-value=3.1e-06 Score=75.96 Aligned_cols=124 Identities=13% Similarity=-0.049 Sum_probs=76.5
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee--e---ccc-ccc--cccc-cccccc-c
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA--N---AML-PSS--LAPS-LPFSSS-N 198 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~--~---~~~-~~~--~~~~-~~~~~~-~ 198 (285)
.++.++.+.+...+.. .++..++.++.|+++||+|||+......... + ... ++. +..+ .+...+ .
T Consensus 31 ~~g~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 105 (485)
T TIGR00711 31 DLGSSLSQVQWVITSY-----MLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGG 105 (485)
T ss_pred hcCCChhhhhHHHHHH-----HHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhh
Confidence 3455555555544433 3666677889999999999997665422111 0 011 111 1111 111112 2
Q ss_pred cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252 199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL 257 (285)
Q Consensus 199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
.......+.+.|.+|+++|. ++..++|.+.|.+.++.+|++.|+....+.++..++...
T Consensus 106 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 175 (485)
T TIGR00711 106 PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF 175 (485)
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHH
Confidence 23334567888999998881 566899999999999999999998776665555544443
No 145
>KOG0254|consensus
Probab=97.84 E-value=3.6e-05 Score=69.83 Aligned_cols=84 Identities=25% Similarity=0.481 Sum_probs=71.5
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc-cCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV-MGAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~-~g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
++|+|.|........+++|..|++.||...++.+....+|..++..++...... ++ ||..+.+..+.+++..+. .++
T Consensus 151 l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~~~~-~~~ 228 (513)
T KOG0254|consen 151 LTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAG-WRIPLGLALIPAVILALG-MLF 228 (513)
T ss_pred HhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCcc-HHHHHHHHHHHHHHHHHH-HHh
Confidence 479999999999999999999999999999999999999999996666555443 34 999999999988888867 778
Q ss_pred ccCCcCc
Q psy5252 80 MEDPERG 86 (285)
Q Consensus 80 ~~~~~~~ 86 (285)
+||.|+.
T Consensus 229 ~pesp~~ 235 (513)
T KOG0254|consen 229 LPESPRW 235 (513)
T ss_pred CCCChHH
Confidence 8887753
No 146
>KOG0255|consensus
Probab=97.82 E-value=3.9e-05 Score=69.73 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=69.2
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.++....+..+++|++++++|+.++.+ ......++..+++.++++.+ +||+.+++..++..+..++ .++.
T Consensus 180 l~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~-~~l~ 254 (521)
T KOG0255|consen 180 LSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLL-WFLP 254 (521)
T ss_pred HHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH-HHcc
Confidence 46889999999999999999999999999999 88888888899999999987 4999999999998877655 5666
Q ss_pred cCCcC
Q psy5252 81 EDPER 85 (285)
Q Consensus 81 ~~~~~ 85 (285)
+|.++
T Consensus 255 ~Es~r 259 (521)
T KOG0255|consen 255 PESPR 259 (521)
T ss_pred CcChH
Confidence 67765
No 147
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.82 E-value=1.6e-05 Score=70.20 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=65.0
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHH-HHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAF-FYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi-~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
|++.+...+....++.+.+|++.|+...+. ++....+|.++++.+.+++.+.+| ||..|.+.+++.++..++..+..+
T Consensus 326 g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 326 AFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555566677888999999999887665 677889999999999999999886 999999988887777766666666
Q ss_pred CCc
Q psy5252 82 DPE 84 (285)
Q Consensus 82 ~~~ 84 (285)
+++
T Consensus 405 ~~~ 407 (420)
T PRK09528 405 GDR 407 (420)
T ss_pred CCc
Confidence 543
No 148
>KOG2325|consensus
Probab=97.81 E-value=0.0007 Score=59.89 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=64.3
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-C-----------chHHHHHhhHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-A-----------WPWSLRVTPVLG 69 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~-----------wr~~f~i~~~~~ 69 (285)
.|+|.+.. ...-+++++--..++|.++++....+..+|.++||.+...+..... | +-.+=|++.++.
T Consensus 140 ~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~ 218 (488)
T KOG2325|consen 140 TGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILW 218 (488)
T ss_pred cCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHH
Confidence 45665554 5566899998888999999999999888888888888877665310 1 233457788888
Q ss_pred HHHHHHHHHhccCCcCccc
Q psy5252 70 ACAVLLILFFMEDPERGEA 88 (285)
Q Consensus 70 ~~~~~l~~~~~~~~~~~~~ 88 (285)
++..+++.++++|.+++..
T Consensus 219 i~~~v~i~~~f~E~~~~~~ 237 (488)
T KOG2325|consen 219 IIYIVIILFFFKEVYRGII 237 (488)
T ss_pred HHHHHHHHhheeecccCcc
Confidence 8888888889999876553
No 149
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.78 E-value=0.0026 Score=56.66 Aligned_cols=158 Identities=10% Similarity=0.016 Sum_probs=88.3
Q ss_pred hhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-------ccCCch----HHHHHhhHHHHHHHHHHHHhc
Q psy5252 12 IAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-------VMGAWP----WSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 12 ~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-------~~g~wr----~~f~i~~~~~~~~~~l~~~~~ 80 (285)
.-.++++|.+..+|-.|-.+++..+.++|..+++.+..++.+ ..+.|. ..+.+.++...+...+....-
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~ 228 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVN 228 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999988873 222342 233444444444443333322
Q ss_pred cCCcCccc------cCccccccccHHHHHHHHhhhhhhHHHHHHH-HHHHHHH---------HHHHhcCCCCcchhHHHH
Q psy5252 81 EDPERGEA------EGRVTEERTSFGEDIRALCKNHRETWIFLNL-NWSIVAD---------MTLYVVLPLRRSTAEAFQ 144 (285)
Q Consensus 81 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~ 144 (285)
++...++. ++++++++.+..++++.++++|.+..+.... .+..... .....-++++.+..++-.
T Consensus 229 ~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~ 308 (472)
T TIGR00769 229 RNVLTDPRSYNPALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDF 308 (472)
T ss_pred hcccCCccccchhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 22111110 1122234556889999999999776632211 1111100 111122344445555544
Q ss_pred HHHhhhccccchhhhhHHHhHHhhhh
Q psy5252 145 ILISHAFGDAGSPYLIGLLSEMFRHS 170 (285)
Q Consensus 145 ~~~~~~~g~~~g~~~~G~l~d~~~~~ 170 (285)
....+.+..+ ..++.+++.+|+|-+
T Consensus 309 ~~~~gi~tl~-~~l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 309 STWTGVVSVT-MMLLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhHH
Confidence 4433434322 244446777777665
No 150
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.77 E-value=2.6e-05 Score=67.15 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=60.0
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~ 72 (285)
|++.+...+...++++|.+|+++|++++|+++....+|..++|.+.+.+.+..+ |++.|.+.+++.++.
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS 374 (377)
T ss_pred HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence 455566667778899999999999999999999999999999999999999886 999999888766554
No 151
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.77 E-value=6.6e-05 Score=67.70 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=57.4
Q ss_pred ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCc
Q psy5252 7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERG 86 (285)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~ 86 (285)
+........++++.+|++.|++++|+.+....++..++|.+.+++.+..++|+.++++..+.+++..+. .+++||+++.
T Consensus 357 ~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~ 435 (490)
T PRK10642 357 NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCC
Confidence 344455677888999999999999975444556668899999998876555887777666666655544 4456887664
Q ss_pred c
Q psy5252 87 E 87 (285)
Q Consensus 87 ~ 87 (285)
.
T Consensus 436 ~ 436 (490)
T PRK10642 436 P 436 (490)
T ss_pred C
Confidence 3
No 152
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.76 E-value=4.6e-05 Score=64.86 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=66.9
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLI 76 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~ 76 (285)
.|++.+...+...+++.|.+|+|+|++.+|+.+...++|..+++.+.+.+.+..+ |+..|.+.+++.++..+..
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHHh
Confidence 4778888899999999999999999999999999999999999999999998775 9999999998887766543
No 153
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.75 E-value=1.4e-06 Score=77.91 Aligned_cols=109 Identities=6% Similarity=-0.014 Sum_probs=69.5
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceeee---e--e--ccccc-c--c-cccccccccccCCc-chhhhhccccCCcchh
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV---A--N--AMLPS-S--L-APSLPFSSSNSTSL-PLVSSLDETAHRSDEF 218 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~---~--~--~~~~~-~--~-~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~ 218 (285)
++..++.++.|+++||+++|+......+. . . +.... . + ...++.+.+.+... .....+.|.+|+++|.
T Consensus 87 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~ 166 (465)
T TIGR00894 87 YGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS 166 (465)
T ss_pred HHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH
Confidence 66777788999999999999765542211 1 0 11111 1 1 11222222233333 3467889999999882
Q ss_pred -----------hhccccchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252 219 -----------LAHKSDEFLAHKSDEF-LALQYALFITSFIEVLGGIFFLLGS 259 (285)
Q Consensus 219 -----------l~~~~~p~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
+|..++|.+.+.+.+. .+|+..|++.++..++..+++....
T Consensus 167 ~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 167 RLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence 5668899999999888 4999999887776665555544433
No 154
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.74 E-value=1.8e-05 Score=71.56 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=67.9
Q ss_pred ccccchhhhhHHHhHHhhhhhccccee-------eeeecc--cc--cc---ccccccccccccCCcch-hhhhccccCCc
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGAST-------LVANAM--LP--SS---LAPSLPFSSSNSTSLPL-VSSLDETAHRS 215 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~--~~--~~---~~~~~~~~~~~~~~~~~-~~~~~~~~p~~ 215 (285)
+-.++..++.|.++||+.||+.+...- ..+.+. .. .. +.+.++...+.....|. ++.+.|++|++
T Consensus 56 LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~ 135 (524)
T PF05977_consen 56 LPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE 135 (524)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence 444445668999999999998776521 111111 11 11 12222233334444554 78899999998
Q ss_pred ch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5252 216 DE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFF 255 (285)
Q Consensus 216 ~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (285)
+. .++..+||.++|.+....|...+|.+.++..+++..++
T Consensus 136 ~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 136 DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILAL 186 (524)
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 84 15568999999999999999988988777666654443
No 155
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.74 E-value=1.2e-05 Score=70.44 Aligned_cols=127 Identities=9% Similarity=-0.041 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeeee-----c---cccc-----cc--
Q psy5252 124 VADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----A---MLPS-----SL-- 188 (285)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~---~~~~-----~~-- 188 (285)
.+....++.++.+.+...+... ++..++.++.|+++||+|||+.......... + .... .+
T Consensus 27 ~~~~~~~g~s~~~~g~~~~~~~-----l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (396)
T TIGR00882 27 IWLHDVNGLSKTDTGIVFSCIS-----LFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVG 101 (396)
T ss_pred HHHHHhcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333344555555555444333 5666678899999999999987754221100 0 0000 00
Q ss_pred -cc-cccccccccCCcc-hhhhhccccCCcc------h---hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 189 -AP-SLPFSSSNSTSLP-LVSSLDETAHRSD------E---FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 189 -~~-~~~~~~~~~~~~~-~~~~~~~~~p~~~------r---~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.+ ..+.....+...| ...+..|..+++. | .+|..++|.++|.+.+ .+|+..|+..+++.++..++.+
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 11 1111111222222 2344445433321 1 2666889999998876 4899999877776666554443
No 156
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.72 E-value=4.1e-05 Score=68.79 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=60.8
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeee--eec---cc-ccc--c-cccccccccccCCcchhhhhccccCCcchh--
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA---ML-PSS--L-APSLPFSSSNSTSLPLVSSLDETAHRSDEF-- 218 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~---~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~-- 218 (285)
.++..++.++.|+++||+|+|+......+. +.. .. .+. + ...++...+.+...+....+.|.+|+++|.
T Consensus 81 ~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a 160 (476)
T PLN00028 81 VSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTA 160 (476)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHH
Confidence 466677788999999999999765442211 111 11 111 1 111111111222334455678999998882
Q ss_pred ---------hhccccchhhhhhh----h-----hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252 219 ---------LAHKSDEFLAHKSD----E-----FLALQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 219 ---------l~~~~~p~~~G~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
++..+++.+.+.+. + ..|||+.|++.+++.++..+...+.
T Consensus 161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33345544444432 2 2589999998777766655544433
No 157
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.70 E-value=0.0001 Score=64.20 Aligned_cols=70 Identities=10% Similarity=0.011 Sum_probs=60.4
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV 73 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~ 73 (285)
|++.....|...+.+.|..|+++++...+.++...++|..+||.+++++.++++ |++.|.+.+.+.++..
T Consensus 296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 445556678899999999999888889999999999999999999999999986 9999998887776554
No 158
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.68 E-value=2.6e-06 Score=73.83 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=74.7
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee--e---ccc-ccc--ccc-cccccccc-
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA--N---AML-PSS--LAP-SLPFSSSN- 198 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~--~---~~~-~~~--~~~-~~~~~~~~- 198 (285)
.++.++.+.+...+.. .++..++.++.|+++||++||+......+.. . ... +.. +.. ..+...+.
T Consensus 20 ~~~~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~ 94 (377)
T PRK11102 20 DFGVSAGSVQMTLSAY-----ILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAA 94 (377)
T ss_pred HhCCCHHHHHHHHHHH-----HHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 3455555555444433 3666677889999999999987655422110 0 111 111 111 11111112
Q ss_pred cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
....+..+.+.|.+|+++|. ++..++|.+.+.+.+..+|+..++..+++.++..+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 95 AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 22334567788999988871 56688999999999988999998877766666554443
No 159
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.68 E-value=6.2e-05 Score=66.76 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=58.4
Q ss_pred HHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 14 PTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 14 ~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
..+++|.+|+++|++++|+.++...+|..++|.+.+.+.++.+ |+..|.+.++++++..+......++
T Consensus 359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999999999999999986 9999999988887776655554443
No 160
>PRK03545 putative arabinose transporter; Provisional
Probab=97.67 E-value=0.00015 Score=63.28 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=64.9
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
|++.+...+...+.+.+..| ++|++++|+++....+|..+|++++|.+.++++ ++..|++.+++.++..+......++
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSILIFRR 382 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHHHccc
Confidence 55555566667778888765 689999999999999999999999999999996 9999999998888877776666653
No 161
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.67 E-value=6.9e-06 Score=71.52 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=72.2
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--ee---cccccc---cccc-cccccccc
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLPSS---LAPS-LPFSSSNS 199 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~~~---~~~~-~~~~~~~~ 199 (285)
.++.+..+.+...+.. .++..++.++.|+++||+++|+........ ++ ....+. +.+. .+...+.+
T Consensus 32 ~~g~s~~~~g~~~s~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~ 106 (382)
T PRK10091 32 DVGISIPAAGHMISYY-----ALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHG 106 (382)
T ss_pred HcCCCHHHHhHHHHHH-----HHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhH
Confidence 3455555555544433 366777888999999999999876653211 11 111111 1111 11111112
Q ss_pred C-CcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy5252 200 T-SLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGI 253 (285)
Q Consensus 200 ~-~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 253 (285)
. .......+.|.+|+++|. ++..++|.+.+.+.+..+|++.|...+++.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~ 172 (382)
T PRK10091 107 AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLA 172 (382)
T ss_pred HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence 2 222345677888887761 45578899999999999999999877766555444
No 162
>PRK11043 putative transporter; Provisional
Probab=97.66 E-value=1.1e-05 Score=70.75 Aligned_cols=122 Identities=14% Similarity=-0.031 Sum_probs=71.7
Q ss_pred HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeeee-----ccc-ccc--cccc-cccccccc-
Q psy5252 130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----AML-PSS--LAPS-LPFSSSNS- 199 (285)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~~~-~~~--~~~~-~~~~~~~~- 199 (285)
++.++.+.+...+.. .++..++.++.|+++||++||+.+........ ... ++. +... .+...+.+
T Consensus 36 ~~~s~~~~g~~~s~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 110 (401)
T PRK11043 36 LQTSASAVSASLSLF-----LAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCS 110 (401)
T ss_pred HCCCHHHHHHHHHHH-----HHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHH
Confidence 444444444444333 36667788899999999999986654221110 011 111 1111 11111111
Q ss_pred CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
......+.+.|.+|++.+. ++..++|.+.|.+.++.+|+..++..+++.++..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 111 AAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 1222356678888887651 45578999999999999999999877666655554443
No 163
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.65 E-value=0.00011 Score=63.42 Aligned_cols=69 Identities=20% Similarity=0.147 Sum_probs=60.9
Q ss_pred ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHH
Q psy5252 9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLIL 77 (285)
Q Consensus 9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~ 77 (285)
..+...++++|.+|+++|++++|+.+...++|..+++.+.+.+.+..++|+..|++.++..++..+...
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999875599999988887766655543
No 164
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.62 E-value=1.1e-05 Score=70.53 Aligned_cols=121 Identities=7% Similarity=-0.092 Sum_probs=68.6
Q ss_pred HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--e---eccccc-c--cccc-ccccccc
Q psy5252 128 TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NAMLPS-S--LAPS-LPFSSSN 198 (285)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~~~~~-~--~~~~-~~~~~~~ 198 (285)
..++.++.+.+...+.. .++..++.++.|+++||++||+.+...... + ...... . +.+. .+...+.
T Consensus 36 ~~~~~s~~~~~~~~~~~-----~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (394)
T PRK11652 36 RDLNVREGAVQAVMAAY-----LLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGT 110 (394)
T ss_pred HHhCCCHHHHHHHHHHH-----HHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Confidence 34555555555444433 366777788999999999999865542211 0 001111 1 1111 1111111
Q ss_pred cCCcc-hhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy5252 199 STSLP-LVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGI 253 (285)
Q Consensus 199 ~~~~~-~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 253 (285)
+...+ ......|..+++.+. ++..++|.+.|.+.+..+|+..+.+.++...+..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 111 GVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 11122 234566777766651 34468899999999988999999876665544443
No 165
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.60 E-value=7.7e-05 Score=65.38 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=72.4
Q ss_pred hhhhhHHHhHH-hhhhhcccceeeeeec-----ccc----cc-ccccccc-cccccCCcc-hhhhhccccCCcch-----
Q psy5252 156 SPYLIGLLSEM-FRHSLQLGASTLVANA-----MLP----SS-LAPSLPF-SSSNSTSLP-LVSSLDETAHRSDE----- 217 (285)
Q Consensus 156 g~~~~G~l~d~-~~~~~~~~~~~~~~~~-----~~~----~~-~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~~r----- 217 (285)
.++++|+++|| +|+|+.+....+.... ..+ .. +.+++.+ ..+++..=| ..+.+.|++|+++.
T Consensus 77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~g 156 (498)
T COG3104 77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG 156 (498)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCC
Confidence 47799999999 5666554442211111 111 11 2222222 233444444 57888899988773
Q ss_pred --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5252 218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYI 262 (285)
Q Consensus 218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
++|+.++|.+.|++.+++||..+|...++.+.++.+.+.+..++.
T Consensus 157 Ft~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 157 FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred ccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 278899999999999999999999999999999988888776543
No 166
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.58 E-value=3.2e-05 Score=70.31 Aligned_cols=108 Identities=10% Similarity=0.077 Sum_probs=65.9
Q ss_pred ccccchhhhhHHHhHHhhhhhccccee--eeeecc----cccc--cccccccc-ccccCCcchhhhhccccCCcchhhh-
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGAST--LVANAM----LPSS--LAPSLPFS-SSNSTSLPLVSSLDETAHRSDEFLA- 220 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~--~~~~~~----~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~r~l~- 220 (285)
++..++.++.|+++|.+|||....... ..++.. .+++ +..+..+. .+.+........++|+.|.+.|.++
T Consensus 89 l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~ 168 (599)
T PF06609_consen 89 LASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGL 168 (599)
T ss_pred HHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHh
Confidence 445555678999999999997554422 111111 1122 23333322 2233333445668999999999422
Q ss_pred ----------ccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252 221 ----------HKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 221 ----------~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
...+|.+...+..+.+|||.+++..+...++.+...+.
T Consensus 169 ~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 169 AIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred HHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 13567776666667789999998888777766655543
No 167
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.58 E-value=5.9e-06 Score=72.78 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=64.0
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--cccc-ccccccccC-CcchhhhhccccCCcchh--
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAPS-LPFSSSNST-SLPLVSSLDETAHRSDEF-- 218 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~~-~~~~~~~~~-~~~~~~~~~~~~p~~~r~-- 218 (285)
++..++.++.|.++||+|||+.+...... ++ ... ++. +.+. .+.+.+.+. .......+.|.+|+++|.
T Consensus 62 ~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (413)
T PRK15403 62 AGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKL 141 (413)
T ss_pred HHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66677788999999999999866542211 01 111 111 1111 111111111 122346677888887751
Q ss_pred ---------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5252 219 ---------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIF 254 (285)
Q Consensus 219 ---------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (285)
++..++|.+++.+.++.||++.|+..++..++..+.
T Consensus 142 ~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 142 MAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999899999998877766665544
No 168
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.57 E-value=6.1e-06 Score=72.04 Aligned_cols=107 Identities=11% Similarity=0.043 Sum_probs=65.9
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeee--eec---cc-ccc--cccc-cccccccc-CCcchhhhhccccCCcchh-
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA---ML-PSS--LAPS-LPFSSSNS-TSLPLVSSLDETAHRSDEF- 218 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~---~~-~~~--~~~~-~~~~~~~~-~~~~~~~~~~~~~p~~~r~- 218 (285)
.++..++.++.|+++||++||+.+...... +.. .. +.. +... .+...+.+ ......+.+.|.+|+++|.
T Consensus 48 ~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~ 127 (392)
T PRK10473 48 LAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAK 127 (392)
T ss_pred HHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHH
Confidence 366667788999999999998765542211 111 11 111 1111 11111122 2334567888999998882
Q ss_pred ----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 219 ----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 219 ----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
++..++|.+.+.+.+..+|+..+++.+.+.++..++..
T Consensus 128 ~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 128 VLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence 44567898988888888999988877766655555443
No 169
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.56 E-value=0.00016 Score=64.80 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=60.4
Q ss_pred cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh------hccCCchHHHHHhhHHHHHHHHHHHHhccCC
Q psy5252 10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF------SVMGAWPWSLRVTPVLGACAVLLILFFMEDP 83 (285)
Q Consensus 10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~------~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~ 83 (285)
.|....+++|.+|+++|++++|+.+....+|..+++.+.+.+. +.++ |++.|++.++++++..++.+++.||+
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLAALFMWKFVPET 460 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHHHHHHHHHhccccC
Confidence 3677899999999999999999999999999988876665444 4565 89999988888777777766677776
Q ss_pred cC
Q psy5252 84 ER 85 (285)
Q Consensus 84 ~~ 85 (285)
++
T Consensus 461 ~~ 462 (479)
T PRK10077 461 KG 462 (479)
T ss_pred CC
Confidence 54
No 170
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.56 E-value=1e-05 Score=73.04 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=69.4
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--cccc-cccccccc
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAPS-LPFSSSNS 199 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~~-~~~~~~~~ 199 (285)
.++.++.+.+....... ++...+.+..|+++||+|||+........ ++ ... ++. +..+ .+...+.+
T Consensus 35 ~l~~s~~~~~~~~~~~~-----l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~ 109 (495)
T PRK14995 35 TLGASGNELLWIIDIYS-----LVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAA 109 (495)
T ss_pred HhCCCHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34444445554444332 44445567899999999999876552211 11 111 111 1111 11122222
Q ss_pred CCcc-hhhhhccc-cCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 200 TSLP-LVSSLDET-AHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 200 ~~~~-~~~~~~~~-~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
...| ....+.+. .|+++|. ++..+||.++|.+.++.+|++.|++...+.++..++..
T Consensus 110 ~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~ 179 (495)
T PRK14995 110 MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTA 179 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Confidence 2233 33445454 4667761 56689999999999999999999876655555444433
No 171
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.55 E-value=0.0001 Score=65.80 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=53.5
Q ss_pred HHHhhcccCCchhHHHHHHHHHHhhHHHH-HHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 15 TIISDLFVKDLRSQMLAFFYFAIPIGSGL-GYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 15 ~~i~~~~~~~~rg~~~gi~~~~~~iG~~~-g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
.++.|.+|+++||+++|+.+....+|..+ +|.+.+.+.++.+ |+..|++.+..+++..+......
T Consensus 370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999888888654 7999999999986 99999988887776665554443
No 172
>KOG1330|consensus
Probab=97.54 E-value=4e-06 Score=72.48 Aligned_cols=130 Identities=9% Similarity=-0.001 Sum_probs=82.0
Q ss_pred HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee---eeeec--ccccc---cc-cccccccc-cc
Q psy5252 130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST---LVANA--MLPSS---LA-PSLPFSSS-NS 199 (285)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~---~~~~~--~~~~~---~~-~~~~~~~~-~~ 199 (285)
++.++...|......+ +...+..+++|.++||+.|++.+..+. ....+ .+... +. .=++.+.+ .+
T Consensus 63 fni~~s~~Gll~~vf~-----v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs 137 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFI-----VVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEAS 137 (493)
T ss_pred cCCCchhccchhHHHH-----HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 5666666666655444 556666789999999999997665532 11111 11111 11 11222223 34
Q ss_pred CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5252 200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLLGSLYIVQ 264 (285)
Q Consensus 200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
.+...++.++|.+|.++|. .|.++|=..++.+.++.+ ||++|...+++.++.+++.++..+..+|
T Consensus 138 ~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 138 YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 4445688999999999992 344555555566677666 9999998888888888777776654443
No 173
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.52 E-value=0.00019 Score=62.76 Aligned_cols=74 Identities=8% Similarity=0.073 Sum_probs=58.7
Q ss_pred cccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 6 EASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
.+...+....+..|.+| ++|++++++++...++|..+++.+++.+.+.++ |+..|++.+++.++..++. ++.||
T Consensus 319 ~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~ 392 (393)
T PRK15011 319 IGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCL-LRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH-HhhcC
Confidence 34444556677888886 569999999999999999999999999999886 9999998887777665444 44454
No 174
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.49 E-value=0.0016 Score=58.75 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=61.8
Q ss_pred ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
+...+...++..+..+++.+++..++.++..++|..+++++.|.+.+.+| |+..|.+.++++++..++... +++
T Consensus 331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~-~~~ 404 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLV-CRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 44556677888899999999999999999999999999999999999886 999999888888777655544 344
No 175
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.48 E-value=5.6e-05 Score=64.76 Aligned_cols=130 Identities=13% Similarity=0.027 Sum_probs=83.6
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-------eecc--ccc--c-ccccccccc
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAM--LPS--S-LAPSLPFSS 196 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~--~~~--~-~~~~~~~~~ 196 (285)
.+++++++.+...+.-. +.|. +.+++.|.+.||+|.|+......++ .++. .+. . +..+.++..
T Consensus 43 ~~~LS~~q~~ll~aiPi----l~Ga-llRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~ 117 (417)
T COG2223 43 DFGLSEGQKGLLVAIPI----LVGA-LLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL 117 (417)
T ss_pred ccCCCHHHHHHHHHHHH----HHhH-HHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence 45666666655554433 4444 4599999999999999866553211 1111 222 1 345555666
Q ss_pred cccCCcchhhhhccccCCcchh----------hhccccchhhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5252 197 SNSTSLPLVSSLDETAHRSDEF----------LAHKSDEFLAHKSDEFLA---LQYALFITSFIEVLGGIFFLLGSLYIV 263 (285)
Q Consensus 197 ~~~~~~~~~~~~~~~~p~~~r~----------l~~~~~p~~~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
.++.++....++++.+||+++. +|..+..+++..+....+ |+.+..+....+++.++...+.....+
T Consensus 118 ~GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 118 AGASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred ccceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 6677777778899999999982 333555666666777777 888887777777777776666555433
No 176
>KOG2816|consensus
Probab=97.47 E-value=0.0012 Score=58.62 Aligned_cols=82 Identities=13% Similarity=0.254 Sum_probs=72.2
Q ss_pred cccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcC
Q psy5252 6 EASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPER 85 (285)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~ 85 (285)
.+.......++++|....|+|...+|+.+.....+..++|.+++.+.+.++ .-..|.+..+..++..+...+++||+..
T Consensus 126 ~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 126 FSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-IALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred hhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHhhccccccC
Confidence 345567788999999999999999999999999999999999999999886 8889999999998888888889998765
Q ss_pred ccc
Q psy5252 86 GEA 88 (285)
Q Consensus 86 ~~~ 88 (285)
+..
T Consensus 205 ~~~ 207 (463)
T KOG2816|consen 205 EKE 207 (463)
T ss_pred ccc
Confidence 443
No 177
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.46 E-value=0.00023 Score=61.48 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=62.2
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+...+....++.|..|+ ++++++++++...++|..+++.+.+.+.+..+ |+..|++.+++.++..++. .+++
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~ 374 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCL-LLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH-heec
Confidence 3566666778888888998865 67799999999999999999999999999886 9999998888776665443 4443
No 178
>KOG2615|consensus
Probab=97.46 E-value=5.2e-05 Score=64.21 Aligned_cols=84 Identities=11% Similarity=-0.030 Sum_probs=57.1
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeeeee--cccccc---c---cc-cccccccccCCcchhhhhccccCCcchh--
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN--AMLPSS---L---AP-SLPFSSSNSTSLPLVSSLDETAHRSDEF-- 218 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~--~~~~~~---~---~~-~~~~~~~~~~~~~~~~~~~~~~p~~~r~-- 218 (285)
.++-.+..+..|.++|+.|||.++..+.+... ...... . .+ =...+...+..++..+.++|.+++++|.
T Consensus 78 ~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ 157 (451)
T KOG2615|consen 78 SILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLG 157 (451)
T ss_pred HHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccce
Confidence 35566677899999999999987655432211 111111 1 11 1112234777788899999999999982
Q ss_pred ---------hhccccchhhhhhhh
Q psy5252 219 ---------LAHKSDEFLAHKSDE 233 (285)
Q Consensus 219 ---------l~~~~~p~~~G~~~~ 233 (285)
+|..+||+++|++.+
T Consensus 158 ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 158 MSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred eeeeehhhhcchhhcchhhhHHHh
Confidence 666899999999988
No 179
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.45 E-value=0.00033 Score=62.70 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=70.4
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|+..|+.++...++.++..|+++.+..+|++....-....+||.+.+.+.+..++-|+.+....++.++..+++ ..++
T Consensus 390 ~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~ 468 (477)
T PF11700_consen 390 IGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVD 468 (477)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhcc
Confidence 588899999999999999999999999999999999999999999999999988889999988887777666554 4444
Q ss_pred C
Q psy5252 82 D 82 (285)
Q Consensus 82 ~ 82 (285)
.
T Consensus 469 ~ 469 (477)
T PF11700_consen 469 V 469 (477)
T ss_pred c
Confidence 3
No 180
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.43 E-value=0.0001 Score=64.67 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=62.6
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC--C-chHHHHHhhHHHHHHHHHHHHh
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG--A-WPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g--~-wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
|++.+...|...+++.+..|+++||+.+|+++....+|..+||.+++.+.+..+ + -...|++.+++.++..+.....
T Consensus 308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (400)
T PRK11646 308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQ 387 (400)
T ss_pred HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 556667778888999999999999999999999999999999999999998742 1 2456666666666665554444
Q ss_pred ccCC
Q psy5252 80 MEDP 83 (285)
Q Consensus 80 ~~~~ 83 (285)
.+++
T Consensus 388 ~~~~ 391 (400)
T PRK11646 388 FSQK 391 (400)
T ss_pred Hhhc
Confidence 4444
No 181
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.42 E-value=0.00019 Score=64.29 Aligned_cols=62 Identities=8% Similarity=0.048 Sum_probs=51.6
Q ss_pred HHHhhcccCCchhHHHHHHHHHHhh-HHHHHHHHHHHhhh------------ccCCchHHHHHhhHHHHHHHHHHH
Q psy5252 15 TIISDLFVKDLRSQMLAFFYFAIPI-GSGLGYIVGSTAFS------------VMGAWPWSLRVTPVLGACAVLLIL 77 (285)
Q Consensus 15 ~~i~~~~~~~~rg~~~gi~~~~~~i-G~~~g~~l~~~l~~------------~~g~wr~~f~i~~~~~~~~~~l~~ 77 (285)
....|.+|+++||++.|+.+...++ |..++|.+.|.+.+ ..+ |+..|++..+..++..+...
T Consensus 372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence 5667999999999999999988886 77999999999999 454 99999988777766554443
No 182
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.42 E-value=0.00074 Score=59.87 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=56.7
Q ss_pred cccchhHHHHhhccc--CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 8 SYSTIAPTIISDLFV--KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 8 ~~~~~~~~~i~~~~~--~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
....++-+++.|... +++|+...+.......+|.+++..++|.+.+..+ +|..|.+.+.+..+..+...+..+|
T Consensus 102 ~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 102 FADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 334445555555552 3347888999999999999999999999999885 9999999988877776666666665
No 183
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.41 E-value=5.7e-05 Score=66.94 Aligned_cols=83 Identities=7% Similarity=-0.045 Sum_probs=46.4
Q ss_pred HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-------eeccc----ccc---cccccccc
Q psy5252 130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAML----PSS---LAPSLPFS 195 (285)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~----~~~---~~~~~~~~ 195 (285)
+++++.+.+...+... ++..++.+..|++.||+|.|+......+. .++.. ++. +....+..
T Consensus 65 ~~ls~~q~g~l~ai~~-----l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~G 139 (462)
T PRK15034 65 FNFTTDQLFLLTALPS-----VSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCG 139 (462)
T ss_pred cCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHH
Confidence 4555555555444333 44445677889999999999766553211 11111 111 12222222
Q ss_pred ccccCCcchhhhhccccCCcch
Q psy5252 196 SSNSTSLPLVSSLDETAHRSDE 217 (285)
Q Consensus 196 ~~~~~~~~~~~~~~~~~p~~~r 217 (285)
.+.....+....+.+.+|+++|
T Consensus 140 igg~~f~~~~~~vs~wfp~~~r 161 (462)
T PRK15034 140 FAGANFASSMGNISFFFPKAKQ 161 (462)
T ss_pred HHHHhHHHHHHHHHHHCCHhHh
Confidence 2234445566778899999987
No 184
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.40 E-value=0.00021 Score=64.42 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=51.4
Q ss_pred ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHH
Q psy5252 9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLG 69 (285)
Q Consensus 9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~ 69 (285)
..+...+++.|.+|+++|++.+|+++....+|..+||.+++.+.+.++ |+..+...+...
T Consensus 383 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~ 442 (496)
T PRK03893 383 ISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSL 442 (496)
T ss_pred cchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence 345667789999999999999999999999999999999999999886 998876555433
No 185
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.22 E-value=0.00027 Score=62.74 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=57.8
Q ss_pred HHHhhcccCCchhHHHHHHHHHHhhH-HHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252 15 TIISDLFVKDLRSQMLAFFYFAIPIG-SGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPE 84 (285)
Q Consensus 15 ~~i~~~~~~~~rg~~~gi~~~~~~iG-~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~ 84 (285)
....|.+|+++|++++|+.+....+| .+++|.+.+.+.++.+ |...|++..+..++..++..+.++|.+
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45679999999999999999887776 5789999999999886 999999888777777777777777643
No 186
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.18 E-value=0.0002 Score=61.97 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=55.2
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHH-HHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAF-FYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLG 69 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi-~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~ 69 (285)
|++.+...+...++++|.+|+++|++++++ ++.+..+|..++|.+++.+.++.++|+..++...+..
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 323 ALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 455667778889999999999999999998 4566778999999999999998765888777665544
No 187
>PRK09952 shikimate transporter; Provisional
Probab=97.18 E-value=0.0011 Score=58.98 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=59.7
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhcc-CCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVM-GAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~-g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
|++.+...+...++++|.+|++.|+...++.+ .+..+|..++|.+.+++.+.. ++|+..+...++..++..+.. +.+
T Consensus 354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~ 432 (438)
T PRK09952 354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHc
Confidence 34445556777889999999999999999854 455689999999999998754 358888888777777666554 445
Q ss_pred cC
Q psy5252 81 ED 82 (285)
Q Consensus 81 ~~ 82 (285)
+|
T Consensus 433 ~~ 434 (438)
T PRK09952 433 KD 434 (438)
T ss_pred cc
Confidence 55
No 188
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.14 E-value=0.00039 Score=64.62 Aligned_cols=43 Identities=5% Similarity=0.081 Sum_probs=31.2
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccce
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAS 176 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~ 176 (285)
.++++..+.|...+... ++..++.++.|++.||.+|++.+...
T Consensus 62 ~F~lss~~~G~i~s~~~-----i~~~~~~i~v~~~~~r~~r~~~i~~g 104 (633)
T TIGR00805 62 RFKLSTSSSGLINGSYE-----IGNLLLIIFVSYFGTKLHRPIVIGIG 104 (633)
T ss_pred hhCCCCCcceeeeehhh-----HHHHHHHHHHHHhhcccCcceEEEec
Confidence 45666666666655443 66666778999999999999877653
No 189
>TIGR00898 2A0119 cation transport protein.
Probab=97.13 E-value=0.00063 Score=61.53 Aligned_cols=78 Identities=14% Similarity=0.054 Sum_probs=61.3
Q ss_pred cccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCC
Q psy5252 4 IGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDP 83 (285)
Q Consensus 4 ~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~ 83 (285)
.+.+..++....+.+|.+|++.|++++|+.+....+|.+++|.+.+ +.+ .+ +..++.+.++..++..++. .++||+
T Consensus 422 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~-~~lpet 497 (505)
T TIGR00898 422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILT-LFLPET 497 (505)
T ss_pred HHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHH-HcCcCC
Confidence 3444556778889999999999999999999999999999999998 444 43 7778888887777766544 566776
Q ss_pred cC
Q psy5252 84 ER 85 (285)
Q Consensus 84 ~~ 85 (285)
+.
T Consensus 498 ~~ 499 (505)
T TIGR00898 498 KG 499 (505)
T ss_pred CC
Confidence 54
No 190
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.12 E-value=5e-05 Score=55.41 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=64.6
Q ss_pred ccccchhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--ccc-ccccccc-ccCCcchhhhhccccCCcchh--
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAP-SLPFSSS-NSTSLPLVSSLDETAHRSDEF-- 218 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~p~~~r~-- 218 (285)
++..++.++.|++.||+++|+........ +. ... .+. ... ......+ ..........+.|.+|+++|.
T Consensus 9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (141)
T TIGR00880 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA 88 (141)
T ss_pred hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence 44555677899999999998765442211 00 011 111 111 1111111 222334567788999998871
Q ss_pred ---------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 219 ---------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 219 ---------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
++..++|.+.|.+.+..+|+..+.....+..+..+...
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA 135 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence 56689999999999988998888876666555554443
No 191
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.09 E-value=0.00083 Score=59.24 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=44.3
Q ss_pred cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHH
Q psy5252 10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWS 61 (285)
Q Consensus 10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~ 61 (285)
.+....++.|.+|+++|++++|+.+....+|..++|.+.+++.+.++ +...
T Consensus 339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~ 389 (426)
T PRK12307 339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA 389 (426)
T ss_pred hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence 34556788999999999999999999999999999999999999875 6554
No 192
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.08 E-value=0.0013 Score=59.45 Aligned_cols=76 Identities=9% Similarity=0.012 Sum_probs=59.8
Q ss_pred cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC---------CchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG---------AWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g---------~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
.+....+.+|.+|.+.|++++|+.+....+|..+++.+.+.+.+..+ ++...|++.++..++..+. .+++
T Consensus 410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~l 488 (502)
T TIGR00887 410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLI 488 (502)
T ss_pred CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEe
Confidence 45566778999999999999999999999999999999999887321 2566788888777766544 4677
Q ss_pred cCCcCc
Q psy5252 81 EDPERG 86 (285)
Q Consensus 81 ~~~~~~ 86 (285)
||++.+
T Consensus 489 pEt~~~ 494 (502)
T TIGR00887 489 PETKGK 494 (502)
T ss_pred ccCCCC
Confidence 887653
No 193
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.04 E-value=0.0012 Score=57.59 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=59.0
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV 73 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~ 73 (285)
.|+..+...++...++.+. |+++|++..++++ ....+|..+++.++|++.++++ + ..|++.++++++..
T Consensus 303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHH
Confidence 5777888999999999998 9999999999986 5678999999999999999985 6 66777777776554
No 194
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.02 E-value=0.0013 Score=57.11 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=63.4
Q ss_pred cccccccccchhHHHHhhcccCC---chhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKD---LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLL 75 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~---~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l 75 (285)
.++|.|++=|...++.+|.++++ +|.+...+++.+.|+|..++..+.+++.+.++ |.+.|.+.++..++..+.
T Consensus 43 ia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 43 IAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHH
Confidence 57889999999999999999886 46778889999999999999999999999886 999999998877766533
No 195
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.99 E-value=0.095 Score=47.13 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=64.1
Q ss_pred HHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHH----HhhHHHHHHHHHHHHhcc
Q psy5252 14 PTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLR----VTPVLGACAVLLILFFME 81 (285)
Q Consensus 14 ~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~----i~~~~~~~~~~l~~~~~~ 81 (285)
..+..|.++.+|-.|..+++..+.++|.+++..+..++.+ ..++|...+. +..+.+++...+ ...+.
T Consensus 166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~-~~~~~ 244 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILL-YRYMN 244 (491)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5778999999999999999999999999999999999888 1123654332 222222222222 22222
Q ss_pred -CC---cCc---cccCccccccccHHHHHHHHhhhhhhHH
Q psy5252 82 -DP---ERG---EAEGRVTEERTSFGEDIRALCKNHRETW 114 (285)
Q Consensus 82 -~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (285)
+. ++. ..++++++++.+..++++.++++|.+..
T Consensus 245 ~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~ 284 (491)
T PF03219_consen 245 KNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLC 284 (491)
T ss_pred HHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHH
Confidence 11 111 1112223455678899999999888765
No 196
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.98 E-value=0.0018 Score=56.89 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=56.2
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLIL 77 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~ 77 (285)
|++.+...+ ..+.+.+.. |++|++++|+.+....+|..++|.+.+.+.+..| |+..|++.+++.++..++..
T Consensus 327 G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 327 GIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHH
Confidence 344444333 345666765 5689999999999999999999999999999886 99999999888776665443
No 197
>PRK10504 putative transporter; Provisional
Probab=96.90 E-value=0.0014 Score=58.63 Aligned_cols=55 Identities=11% Similarity=0.200 Sum_probs=48.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG 56 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g 56 (285)
+|++.+...+....++.+.+|+|+++.++|+.+....+|..+|+.+++.+.+..+
T Consensus 363 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 363 QGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777788888999999999999999999999999999999999999887654
No 198
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.90 E-value=0.002 Score=56.27 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=55.7
Q ss_pred cccccchhHHHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252 6 EASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV 73 (285)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~ 73 (285)
.+...+...+.+.+..++ +++++.+++.++..++|..++|.++|.+.+..| ++..|.+.+++.++..
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHH
Confidence 455556667777777776 789999999999999999999999999999886 9999998877666544
No 199
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.87 E-value=0.00015 Score=62.41 Aligned_cols=55 Identities=16% Similarity=-0.004 Sum_probs=41.5
Q ss_pred cchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh--------hHHHHHHHHHHHHHHHHHHH
Q psy5252 202 LPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA--------LQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 202 ~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 256 (285)
.+..+++.|.+|+++|. +|..++|.+.+.+.++.+ |+..|++.++..++..+..+
T Consensus 102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 44567889999998882 556788888888888888 99999887776666544433
No 200
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.87 E-value=0.0033 Score=56.43 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=58.4
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHH
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLI 76 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~ 76 (285)
+++.+..+.+...++.+..|+++++...+++++..++|..+++.+++.+.+..| +.++...+.....-+..+..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 445556667779999999999999999999999999999999999999998764 23333333333333333344
Q ss_pred HHhccC
Q psy5252 77 LFFMED 82 (285)
Q Consensus 77 ~~~~~~ 82 (285)
.+++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 457786
No 201
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.86 E-value=0.0011 Score=57.13 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=69.1
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+.|...|+.++.+-++.++.+|++|-++.+|+++...-.+..+||.+-+.+.+..++-|..+....++..+.. +....+
T Consensus 350 l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl-~~L~~v 428 (438)
T COG2270 350 LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL-LLLLRV 428 (438)
T ss_pred HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH-hhEEee
Confidence 3578899999999999999999999999999999999999999999999999988888888776666555444 334455
Q ss_pred cCCc
Q psy5252 81 EDPE 84 (285)
Q Consensus 81 ~~~~ 84 (285)
|++.
T Consensus 429 ~~~~ 432 (438)
T COG2270 429 KVPG 432 (438)
T ss_pred cCCC
Confidence 5543
No 202
>KOG0255|consensus
Probab=96.80 E-value=0.00033 Score=63.70 Aligned_cols=103 Identities=15% Similarity=0.043 Sum_probs=65.5
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeee-----eecccccc--c-----cccccccccccCCcchhhhhccccCCcch
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLPSS--L-----APSLPFSSSNSTSLPLVSSLDETAHRSDE 217 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 217 (285)
.+|.++|+++.|.++|++|||+......+. ....+... . ++.++.. .+.....+..++|.+++++|
T Consensus 128 ~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~--~~~~~~~~~~~~E~~~~~~R 205 (521)
T KOG0255|consen 128 FLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFG--SGPLTVGFGLVAEIVSPKQR 205 (521)
T ss_pred HHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhc--cchhHHhHhhheeecCcchh
Confidence 488888999999999999999766553211 11111111 1 1111111 33444456778999999999
Q ss_pred h----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 218 F----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 218 ~----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
. .+..++|...+++.. +||+.++..++..++..+.++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~ 252 (521)
T KOG0255|consen 206 GLALTLGGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWF 252 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHH
Confidence 3 233566666666666 899988887777666655533
No 203
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.80 E-value=0.0018 Score=57.37 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=47.3
Q ss_pred cccccccccchhHHHHhhccc-------CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCc
Q psy5252 2 VGIGEASYSTIAPTIISDLFV-------KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAW 58 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~-------~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~w 58 (285)
.|++.+...+...++++|..+ ++++|..+|+++....+|..+++.+.+.+.+..| |
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G-~ 383 (437)
T TIGR00792 321 AGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG-Y 383 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 356777778888899988865 5568999999999999999999999999988764 5
No 204
>KOG3762|consensus
Probab=96.79 E-value=0.0021 Score=57.14 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=67.7
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHH-hhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAI-PIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILF 78 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~-~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~ 78 (285)
++|+..+.++.++.+++++..||+-|..+.++.+... .+|-.+|.+++|.+...++ -|..|.+.++.+++.+++...
T Consensus 468 lqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 468 LQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999999999999997665 7999999999999999996 899999999888877655433
No 205
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0015 Score=57.54 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=66.6
Q ss_pred cccccccccchhHHHHhhcccCC--chhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKD--LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~--~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
.++|.|.+=|...++++|.+|++ +|-..+++++.+.|+|..++|.+.+++.+.++ |+..|-+.++-..... +.+..
T Consensus 127 I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl-~~f~~ 204 (498)
T COG3104 127 IIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGL-VIFLL 204 (498)
T ss_pred HHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHH-HHHHH
Confidence 46889999999999999999986 47788999999999999999999999999997 9999998877655554 44455
Q ss_pred ccC
Q psy5252 80 MED 82 (285)
Q Consensus 80 ~~~ 82 (285)
.|.
T Consensus 205 ~~r 207 (498)
T COG3104 205 GRR 207 (498)
T ss_pred ccc
Confidence 543
No 206
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=96.59 E-value=0.0064 Score=53.35 Aligned_cols=79 Identities=13% Similarity=-0.029 Sum_probs=54.8
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+...+...+...+ .++++||+..++++....+|..+|+.+.+.+.+..+ +....+...+..++...+...+.+
T Consensus 319 ~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK15402 319 YAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLWLLLVRIFLK 396 (406)
T ss_pred HHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355556555655555544 345899999999999999999999999999988775 655555555555554444444444
Q ss_pred C
Q psy5252 82 D 82 (285)
Q Consensus 82 ~ 82 (285)
+
T Consensus 397 ~ 397 (406)
T PRK15402 397 D 397 (406)
T ss_pred c
Confidence 4
No 207
>KOG2532|consensus
Probab=96.53 E-value=0.00019 Score=63.96 Aligned_cols=126 Identities=12% Similarity=-0.021 Sum_probs=78.7
Q ss_pred hcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee---eecccccc--c--ccc----cccccc-c
Q psy5252 131 VVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV---ANAMLPSS--L--APS----LPFSSS-N 198 (285)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~---~~~~~~~~--~--~~~----~~~~~~-~ 198 (285)
..+.++.+...+.. ..|.+++.+..|.+.||+|.|++.....+. ..+..|.. . ... ++-+.+ .
T Consensus 69 ~ws~~~k~~i~ss~-----~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 69 DWSSTEKGLIFSSF-----FWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG 143 (466)
T ss_pred cCCHHHHHHHHHHH-----HHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence 33444444444433 488888888999999999999765542211 11111110 0 000 000111 2
Q ss_pred cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5252 199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEF-LALQYALFITSFIEVLGGIFFLLGSLY 261 (285)
Q Consensus 199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
........+.++-.|+++|. +|+.++-.+.|.+.+. .||+..|++.+++.++-.++++.....
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 23334567778889999982 5556676788888888 899999999988888877777766553
No 208
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=96.48 E-value=0.41 Score=42.57 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=65.9
Q ss_pred HHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCC---------chHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252 14 PTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA---------WPWSLRVTPVLGACAVLLILFFMEDPE 84 (285)
Q Consensus 14 ~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~---------wr~~f~i~~~~~~~~~~l~~~~~~~~~ 84 (285)
.....|.+..||-.|-.++++.+.+++..++..+..++..+... -+..+.+.++.+++...+.++.-+...
T Consensus 170 w~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il 249 (509)
T COG3202 170 WQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVL 249 (509)
T ss_pred HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35677888899999999999999999999999999998874321 234455555555554444433322211
Q ss_pred Ccc-------ccCccccccccHHHHHHHHhhhhhhHH
Q psy5252 85 RGE-------AEGRVTEERTSFGEDIRALCKNHRETW 114 (285)
Q Consensus 85 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (285)
+.+ .++++++.+....+.++.+.|+|.+..
T Consensus 250 ~~~~f~~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ 286 (509)
T COG3202 250 TDPLFYLRAKKKKKKKKLKLGLIESFKMILRSKYLGA 286 (509)
T ss_pred cCcchhHHHhcccccccccCcHHHHHHHHHhhhHHHH
Confidence 111 111223344567888999999887765
No 209
>PRK03699 putative transporter; Provisional
Probab=96.44 E-value=0.0038 Score=54.56 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=58.1
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
|++.+..++...++..+..| +++++..+.......+|..++|.+.+++.+..+ |+..|++.+++.++..+++...
T Consensus 305 G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 305 GFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHH
Confidence 44555566777777777665 557788899999999999999999999999886 9999988887776665444333
No 210
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.44 E-value=0.0042 Score=62.05 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=60.0
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLI 76 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~ 76 (285)
.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++.+.+.....++...|++.+++.++...+.
T Consensus 344 ~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (1140)
T PRK06814 344 LAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAILI 418 (1140)
T ss_pred HHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 467777888889999999999999999999999999999999999999987533247777766665544444333
No 211
>KOG4686|consensus
Probab=96.42 E-value=0.0057 Score=50.28 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=55.4
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCC--chHHHHHhhHHHHHHHHHHHHhc
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA--WPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~--wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
|+..+..-......++..+|+++.|++.|..++..|+|-++.+++++.+.++-|+ |-..|++......+..+-..+.+
T Consensus 363 GLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 363 GLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 4444433333556777888999999999999999999999999999999987543 54455544333333333444444
Q ss_pred cCC
Q psy5252 81 EDP 83 (285)
Q Consensus 81 ~~~ 83 (285)
.++
T Consensus 443 N~k 445 (459)
T KOG4686|consen 443 NKK 445 (459)
T ss_pred ecc
Confidence 443
No 212
>PRK15075 citrate-proton symporter; Provisional
Probab=96.36 E-value=0.0062 Score=54.03 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=42.9
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHH-HHhhHHHHHHHHHHHhhhccCCch
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYF-AIPIGSGLGYIVGSTAFSVMGAWP 59 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~-~~~iG~~~g~~l~~~l~~~~g~wr 59 (285)
|++.+...+....++.|.+|+++|++.+++.+. +..++..++|.+.+++.+..+ ++
T Consensus 342 ~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g-~~ 398 (434)
T PRK15075 342 SFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG-DK 398 (434)
T ss_pred HHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC-Cc
Confidence 344455556667889999999999999999644 444557789999999999875 54
No 213
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.018 Score=49.92 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=54.9
Q ss_pred hHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 13 APTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 13 ~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
...-+++ ..||.+..+.+++....|+|..+|..++|.+.+++| ++...++.+++.++..++.....+
T Consensus 321 ~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 321 LQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444 336899999999999999999999999999999986 999999999988887766655443
No 214
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.25 E-value=0.0074 Score=52.68 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=64.8
Q ss_pred cccccchhHHHHhhcccCCchhHHHHHH-HHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252 6 EASYSTIAPTIISDLFVKDLRSQMLAFF-YFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPE 84 (285)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~~~rg~~~gi~-~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~ 84 (285)
.+....+...++++.+|+|-.++...+. +.+..+|..+.+.++|.+.++.| .+..|++++.+.++..++..+.+++++
T Consensus 326 ~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 326 FPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 3455677889999999988888888885 68889999999999999999996 999999999998888888888887654
Q ss_pred C
Q psy5252 85 R 85 (285)
Q Consensus 85 ~ 85 (285)
+
T Consensus 405 ~ 405 (412)
T PF01306_consen 405 K 405 (412)
T ss_dssp S
T ss_pred c
Confidence 4
No 215
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.011 Score=50.25 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=63.2
Q ss_pred CcccccccccchhHHHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILF 78 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~ 78 (285)
++|+|.|..+|.+...+.+..+. ++-++..|+.+....+=...||.+.|++-+..|||+.+........++..+.-+.
T Consensus 305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 46999999999999999988766 4556777777877777788899999999999999999988777776665544433
No 216
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.14 E-value=0.017 Score=50.62 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=48.4
Q ss_pred ccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHH
Q psy5252 5 GEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLI 76 (285)
Q Consensus 5 g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~ 76 (285)
+.+...+....++.+.+|.++ .++++...++|...+.+++|.+.+.+| |+..|.+.++++++..++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 320 GTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 344445666667777776554 455555667787777789999999996 9999999888887765454
No 217
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.11 E-value=0.00095 Score=58.81 Aligned_cols=106 Identities=6% Similarity=-0.034 Sum_probs=60.9
Q ss_pred hhhccccchhhhhHHHhHHhhhhhcccceeee--eecc-------cccc--cccc-cccccc-ccCCcchhhhhccccCC
Q psy5252 148 SHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANAM-------LPSS--LAPS-LPFSSS-NSTSLPLVSSLDETAHR 214 (285)
Q Consensus 148 ~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~~-------~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~p~ 214 (285)
...++..++.+..|++.||+|+|+.+...... ++.. .++. +... ++...+ .......++.+.+..|+
T Consensus 46 ~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~ 125 (410)
T TIGR00885 46 AFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE 125 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH
Confidence 33477777888999999999999866553211 1111 0111 1111 111222 22233445667777777
Q ss_pred cch-----------hhhccccchhhhhhh--------------------------hhhhhHHHHHHHHHHHHHHHH
Q psy5252 215 SDE-----------FLAHKSDEFLAHKSD--------------------------EFLALQYALFITSFIEVLGGI 253 (285)
Q Consensus 215 ~~r-----------~l~~~~~p~~~G~~~--------------------------~~~~~~~~~~~~~~~~~~~~~ 253 (285)
+.| .+|..++|.+.+.+. +..+|+..+...+++.++..+
T Consensus 126 ~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 126 STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 156678888877663 234688888776665554443
No 218
>KOG3762|consensus
Probab=96.07 E-value=0.017 Score=51.61 Aligned_cols=116 Identities=10% Similarity=-0.023 Sum_probs=74.4
Q ss_pred hccccchhhhhHHHhHHhhhhhccccee-------eeeecccccc-c-----cccccccccccCCcchhhhhccccCCcc
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGAST-------LVANAMLPSS-L-----APSLPFSSSNSTSLPLVSSLDETAHRSD 216 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 216 (285)
..|-+..-++.+++.+|+|+.+.+.... +...+.-.+. + .-+... ........++++...||+.
T Consensus 416 ~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~---aliWaa~~sY~s~vaPp~l 492 (618)
T KOG3762|consen 416 HAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITH---ALIWAAIISYASHVAPPGL 492 (618)
T ss_pred ccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHH---HHHHHHHHHHHHhhCCCcc
Confidence 4666666678889999999887654422 1111111111 1 111111 1112223466778899998
Q ss_pred hh------------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5252 217 EF------------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRAR 268 (285)
Q Consensus 217 r~------------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (285)
|. +|-..|++++|.+.+.++-+..|.+.++.+++..+.+....+..+++.+.
T Consensus 493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i 556 (618)
T KOG3762|consen 493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLLKRRGFI 556 (618)
T ss_pred hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 71 56689999999999999999999988888887777777666655555443
No 219
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.00 E-value=0.0013 Score=58.15 Aligned_cols=111 Identities=11% Similarity=-0.068 Sum_probs=67.0
Q ss_pred HHHHHHhcCCCC-cchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee-------eeecccccc-c-cccccc
Q psy5252 125 ADMTLYVVLPLR-RSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL-------VANAMLPSS-L-APSLPF 194 (285)
Q Consensus 125 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~-------~~~~~~~~~-~-~~~~~~ 194 (285)
+....++++.++ .|....... .+..+..+.+|+++||+|.|+.+....+ +.++..... + ++=+++
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~-----ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll 125 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLP-----YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY 125 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHH-----HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467777777 676666554 6777778899999999999987665321 111111111 1 111111
Q ss_pred cccccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHH
Q psy5252 195 SSSNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYAL 241 (285)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~ 241 (285)
+.+.+.....+.++.+-+|+++|. +|.++++.+.++ ....||+.-.
T Consensus 126 GvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~ 182 (511)
T TIGR00806 126 SVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS 182 (511)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence 111122225677888999999982 667888888888 4456776433
No 220
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=95.83 E-value=0.022 Score=51.06 Aligned_cols=84 Identities=18% Similarity=0.079 Sum_probs=70.5
Q ss_pred cccccccccchhHHHHhhcccC--CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVK--DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILF 78 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~--~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~ 78 (285)
.|+.-+..+...++++++..++ ++.|..+|+++....+.+++..+..+.+.+.+| +-.+.+.+.++..++..++..+
T Consensus 390 ~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 390 LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 5677777888889999999985 456999999999999999999998888776665 4566888889999999989888
Q ss_pred hccCCcC
Q psy5252 79 FMEDPER 85 (285)
Q Consensus 79 ~~~~~~~ 85 (285)
.+|+++.
T Consensus 470 ~~~~~~~ 476 (477)
T TIGR01301 470 LLPRPRV 476 (477)
T ss_pred hCCCCCC
Confidence 8887653
No 221
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.82 E-value=0.022 Score=49.61 Aligned_cols=69 Identities=10% Similarity=-0.010 Sum_probs=53.4
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV 73 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~ 73 (285)
.|++.+...+....++.+. +++++++..++++ ....+|..+|+.++|.+.+.++ + ..|+..+++.++..
T Consensus 303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHH
Confidence 4666777788888888886 5667899999886 6677888999999999999886 6 46666666655443
No 222
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=95.72 E-value=0.049 Score=50.88 Aligned_cols=76 Identities=26% Similarity=0.501 Sum_probs=62.1
Q ss_pred cccccccccchhHHHHhhcccCC---chhHHHHHHHHHHhhHHHHHHHHHHHhhhcc---C---CchHHHHHhhHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKD---LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM---G---AWPWSLRVTPVLGACA 72 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~---~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~---g---~wr~~f~i~~~~~~~~ 72 (285)
..+|.|++-|+..+...|.++++ +|-..+.+++.+.|+|..+++.+.+++.+.. + +|...|.+.++..++.
T Consensus 95 ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia 174 (654)
T TIGR00926 95 IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILA 174 (654)
T ss_pred HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Confidence 45788899999999999999864 3778899999999999999999999987443 1 4999999988887776
Q ss_pred HHHHH
Q psy5252 73 VLLIL 77 (285)
Q Consensus 73 ~~l~~ 77 (285)
.++..
T Consensus 175 ~lvf~ 179 (654)
T TIGR00926 175 LIVFM 179 (654)
T ss_pred HHHHH
Confidence 65543
No 223
>KOG2504|consensus
Probab=95.71 E-value=0.004 Score=56.27 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=66.0
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLIL 77 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~ 77 (285)
.|+..|.+......++.|..+.++...+.|+......++..+||++++++.+..++|...|+..++..++...++.
T Consensus 398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 3566677777777899999999999999999999999999999999999999887899999999988777764443
No 224
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=95.70 E-value=0.033 Score=49.37 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=46.8
Q ss_pred cchhHHHHhhcccCCchhHHHHHHHHHHhh-HHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 10 STIAPTIISDLFVKDLRSQMLAFFYFAIPI-GSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~i-G~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
.+....+++|++|+|.|++++|+.+...++ .....|.+.+.+. ..++|...++..++..++..+.. .++++
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~-~~l~~ 425 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVS-LMLHR 425 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHH-HHhhh
Confidence 344567889999999999999999866553 3445777777554 34446666666655555554443 34443
No 225
>KOG3098|consensus
Probab=95.67 E-value=0.18 Score=44.86 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=44.2
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF 52 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~ 52 (285)
+.|+|.+..+..--.++++...+|++.+..++.-.....+..+|..+--.+.
T Consensus 111 llG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~ 162 (461)
T KOG3098|consen 111 LLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYF 162 (461)
T ss_pred HhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence 4699999999999999999999999999999998888888887766654443
No 226
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=95.59 E-value=0.024 Score=56.75 Aligned_cols=72 Identities=10% Similarity=-0.046 Sum_probs=55.3
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV 73 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~ 73 (285)
.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++.+++.+.....++...|++.+.+.++..
T Consensus 332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 403 (1146)
T PRK08633 332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGT 403 (1146)
T ss_pred HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 467777788888999999999999999999999999999988888887775421136666666655544433
No 227
>KOG0569|consensus
Probab=95.42 E-value=0.076 Score=47.50 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=66.8
Q ss_pred ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcc
Q psy5252 9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGE 87 (285)
Q Consensus 9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~ 87 (285)
..|...-+.+|.+|++.|..++++.....-+...+-...-..+.+..|+ +.|++..+.+.+..+..++.+||++.+.
T Consensus 385 ~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 385 PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 3578888999999999999999999999999998888888888888873 7788888888888889999999997543
No 228
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=95.18 E-value=0.14 Score=43.59 Aligned_cols=92 Identities=20% Similarity=0.119 Sum_probs=55.6
Q ss_pred ccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHHhccCCcCccccCcccccccc
Q psy5252 21 FVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTS 98 (285)
Q Consensus 21 ~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|++..+.-++... ..+.+-.+++.+++.++.+..+ +-..+|.....+.++..+++...-+|...+..+ +.+..++
T Consensus 155 ~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~--~~~~~~~ 232 (354)
T PF05631_consen 155 FPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSS--SSSLSGS 232 (354)
T ss_pred CChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCccc--ccchHHH
Confidence 44444555555555 4455566777777777777654 247788888777776666655545554332111 1122345
Q ss_pred HHHHHHHHhhhhhhHH
Q psy5252 99 FGEDIRALCKNHRETW 114 (285)
Q Consensus 99 ~~~~~~~~~~~~~~~~ 114 (285)
.++.++.+.+||+.+.
T Consensus 233 ~~~a~~~i~~d~ril~ 248 (354)
T PF05631_consen 233 FREAWRAILSDPRILL 248 (354)
T ss_pred HHHHHHHHHcCchhHH
Confidence 6677888888888876
No 229
>KOG0254|consensus
Probab=95.17 E-value=0.0071 Score=54.96 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=61.2
Q ss_pred hccccchhhhhHHHhHHhhhhhccccee-------eeeecccccc-ccccccc-c-ccccCCcchhhhhccccCCcchh-
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGAST-------LVANAMLPSS-LAPSLPF-S-SSNSTSLPLVSSLDETAHRSDEF- 218 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~r~- 218 (285)
.+|..+|.++.|+++|++|||+.+.... ++.++..... +..+=++ . +.++.......+++|..|++.|.
T Consensus 99 ~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~ 178 (513)
T KOG0254|consen 99 NLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGT 178 (513)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHH
Confidence 4777788899999999999997665422 1111111111 2111111 1 11344455677899999999992
Q ss_pred ----------hhccccchhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHH
Q psy5252 219 ----------LAHKSDEFLAHKSDEFL--ALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 219 ----------l~~~~~p~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 256 (285)
+|..++ .+.|...++. +||..+....+..++-.+.++
T Consensus 179 l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~ 227 (513)
T KOG0254|consen 179 LVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGML 227 (513)
T ss_pred HHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 222233 4555555443 799777776666666665533
No 230
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.17 E-value=0.072 Score=46.63 Aligned_cols=65 Identities=11% Similarity=-0.024 Sum_probs=49.9
Q ss_pred cccccccccchhHHHHhhcccCCc-hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDL-RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVL 68 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~-rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~ 68 (285)
.|++.+...+...+.+.+..|+|+ +|++.++.+...++|..++..+.+.+.. +| -|..+.+.++.
T Consensus 303 ~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 368 (393)
T PRK11195 303 IGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK-LG-VPVVAVIVGFG 368 (393)
T ss_pred HHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH-cC-CCHHHHHHHHH
Confidence 467777778888888888765554 7999999999999999999999997644 54 56655554433
No 231
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=94.91 E-value=0.13 Score=41.92 Aligned_cols=80 Identities=16% Similarity=0.117 Sum_probs=52.7
Q ss_pred ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
|.+.+.+..++.....+.|| ++||.+.|+.-....++..+-..+...+.+. |-..-+...+....+..+...++++.
T Consensus 107 ~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~--~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 107 GNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD--DPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred cccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHhhheec
Confidence 34455556677677778996 5899999999999999888877776666654 23333444555544444455556665
Q ss_pred CcC
Q psy5252 83 PER 85 (285)
Q Consensus 83 ~~~ 85 (285)
.++
T Consensus 184 ~~~ 186 (250)
T PF06813_consen 184 VPP 186 (250)
T ss_pred cCC
Confidence 443
No 232
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=94.91 E-value=0.022 Score=48.99 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=48.7
Q ss_pred cccccccccchhHHHHhhccc-CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchH
Q psy5252 2 VGIGEASYSTIAPTIISDLFV-KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~ 60 (285)
.|++.+...|...+.+.+..+ +++++..+++.+....+|..++|.+.+.+.++.++|.+
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 577888888888787776555 46678999999999999999999999999998876654
No 233
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=94.47 E-value=0.058 Score=45.62 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=51.5
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVL 68 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~ 68 (285)
.|++.+..+|...+...+.+|+ +.+++.++. ....+|.++.|++.|.+.+..+ .+..|++..+.
T Consensus 240 ~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v~~~~ 303 (310)
T TIGR01272 240 LGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHHHHHHHH
Confidence 5788889999999999998865 456777776 4566899999999999999886 88888744433
No 234
>PRK09848 glucuronide transporter; Provisional
Probab=94.35 E-value=0.038 Score=49.24 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=46.7
Q ss_pred cccccccccchhHHHHhhcccCC-------chhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKD-------LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG 56 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~-------~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g 56 (285)
.|+|.+...+...++.+|..|.+ ++|..+|+++....+|..+|+.+.+.+.+..|
T Consensus 329 ~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 329 ASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788888888999999988754 35999999999999999999999999877653
No 235
>PRK09669 putative symporter YagG; Provisional
Probab=94.35 E-value=0.049 Score=48.49 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=45.7
Q ss_pred cccccccccchhHHHHhhcccC-------CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252 2 VGIGEASYSTIAPTIISDLFVK-------DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG 56 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~-------~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g 56 (285)
.|++.+...+...++++|..+. ++.|...|.++....+|..+|+.+++.+.+..|
T Consensus 329 ~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 329 FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4777888889999999998862 334667899999999999999999999988764
No 236
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=94.22 E-value=1.2 Score=39.63 Aligned_cols=58 Identities=9% Similarity=-0.082 Sum_probs=43.9
Q ss_pred cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 22 VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 22 ~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
+++++.+.++.+.-.-.+.-+++|++.|.+.+..+ .+....+.+...++..++-++++
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888999999999999999775 88777766666666555444443
No 237
>KOG3764|consensus
Probab=94.00 E-value=0.4 Score=41.63 Aligned_cols=54 Identities=7% Similarity=0.048 Sum_probs=39.4
Q ss_pred ccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHH
Q psy5252 21 FVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLL 75 (285)
Q Consensus 21 ~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l 75 (285)
-++++-....|+...+..+-+.+..++.|.+.++.| +|.++++.-++.....++
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iG-y~ipm~~Gl~vmf~sTil 152 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIG-YKIPMVAGLFVMFLSTIL 152 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhc-cccHHHHHHHHHHHHHHH
Confidence 344555567888888888888888888888888886 999887655554444433
No 238
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=93.73 E-value=0.19 Score=41.14 Aligned_cols=70 Identities=19% Similarity=0.383 Sum_probs=56.4
Q ss_pred cccccccccchhHHHHhhcccC-CchhHHHHHHHH-HHhhHHHHHHHHHHHhhhc--cCCchHHHHHhhHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVK-DLRSQMLAFFYF-AIPIGSGLGYIVGSTAFSV--MGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~-~~~iG~~~g~~l~~~l~~~--~g~wr~~f~i~~~~~~~~ 72 (285)
+|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+... . +||..|.+........
T Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLW-GWRAAFLLAALLGLLL 177 (338)
T ss_pred HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence 4778888899999999999987 689999999988 5888999998888777754 3 4999777766665443
No 239
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=93.31 E-value=0.0074 Score=53.69 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=61.8
Q ss_pred ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcc
Q psy5252 9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGE 87 (285)
Q Consensus 9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~ 87 (285)
..+....+.+|.+|.+.|++..++......++..+++.+...+.+..+ -...|.+.+.+.++..+...+++||++.+.
T Consensus 366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGVCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence 346666888999999999999999999999999999998888877653 245666666666677777778899987643
No 240
>KOG2533|consensus
Probab=92.69 E-value=2.1 Score=38.78 Aligned_cols=117 Identities=13% Similarity=-0.001 Sum_probs=64.8
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHH
Q psy5252 24 DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDI 103 (285)
Q Consensus 24 ~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (285)
+..+.-.+...+...+|.+++.+.++++.+.+. -.......++...+..++... . .++
T Consensus 77 ~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~-ls~~l~~~~~~w~~~~~~~~~-~--------------------~s~ 134 (495)
T KOG2533|consen 77 KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP-LSKGLSVSGILWGLFGFLTAA-V--------------------HSF 134 (495)
T ss_pred chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHH-H--------------------hhh
Confidence 356777888888999999999999999999885 444333333332222222211 1 111
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHh
Q psy5252 104 RALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMF 167 (285)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~ 167 (285)
..+.--+.+.-++-...|-........-...++++.-++... ...-+|..++|.++-.+
T Consensus 135 ~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~-----a~~~~g~i~ggliA~g~ 193 (495)
T KOG2533|consen 135 PGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWY-----ASASLGNIFGGLIAYGV 193 (495)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHH-----HhcchhhHHHHHHHHHh
Confidence 111111111113334455555445555667778888888654 33344455666666654
No 241
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=92.21 E-value=0.49 Score=38.57 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHh---hh-ccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcccc-Ccc-ccccc
Q psy5252 24 DLRSQMLAFFYFAIPIGSGLGYIVGSTA---FS-VMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAE-GRV-TEERT 97 (285)
Q Consensus 24 ~~rg~~~gi~~~~~~iG~~~g~~l~~~l---~~-~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~-~~~-~~~~~ 97 (285)
++|+....+-..+.++|.++....--.- .+ .-.+|++.+-+.+++..+-+++..++-+|-+....+ +++ ++.+.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k~~~~~ 81 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEKENSTL 81 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccccccccc
Confidence 5667667777777888877765543221 11 011599999999888777665655554432111111 111 11111
Q ss_pred cHHHHHHHHhhhhhhH-HHHHHHHHHHH--------HHHHHHhcCC---------CCcchhHHHHHHHhhhccccchhhh
Q psy5252 98 SFGEDIRALCKNHRET-WIFLNLNWSIV--------ADMTLYVVLP---------LRRSTAEAFQILISHAFGDAGSPYL 159 (285)
Q Consensus 98 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~ 159 (285)
+..+..+..+|++..| |...+..|... ........++ +....... ...+....|..+|++.
T Consensus 82 ~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~-~~~I~fv~g~~~G~~~ 160 (267)
T PF07672_consen 82 SKKPSYKSILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIP-IFQILFVAGYFLGPFT 160 (267)
T ss_pred cccchHHHHHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhH-HHHHHHHHHHhhhcee
Confidence 2235566777777554 44444444321 1110111111 11111112 2334445777788889
Q ss_pred hHHHhHHhhhhhcc
Q psy5252 160 IGLLSEMFRHSLQL 173 (285)
Q Consensus 160 ~G~l~d~~~~~~~~ 173 (285)
.|..+...-+|++.
T Consensus 161 ig~~nkt~~kRk~f 174 (267)
T PF07672_consen 161 IGLWNKTNYKRKPF 174 (267)
T ss_pred eccchhhhhhhhhH
Confidence 99888765555433
No 242
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=91.63 E-value=7.7 Score=34.20 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=51.3
Q ss_pred chhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252 11 TIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILFFMEDPE 84 (285)
Q Consensus 11 ~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~~~~~~~ 84 (285)
.+-.++|-..+|+++-.++.+...++.-+|..++..++..+...-+ +.+....+.-....+.. ++.+++|.++
T Consensus 112 vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~-~~~~fLP~~~ 185 (412)
T PF01770_consen 112 VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL-LIALFLPMPK 185 (412)
T ss_pred HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHcCCCC
Confidence 4456778888899999999999999999999999999998887322 34555454444333333 4445666544
No 243
>KOG2816|consensus
Probab=91.62 E-value=0.049 Score=48.62 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=65.6
Q ss_pred ccchhhhhHHHhHHhhhhhccccee---ee--eeccccccc--cccccccccccCCcchhhhhccccCCcchh-------
Q psy5252 153 DAGSPYLIGLLSEMFRHSLQLGAST---LV--ANAMLPSSL--APSLPFSSSNSTSLPLVSSLDETAHRSDEF------- 218 (285)
Q Consensus 153 ~~~g~~~~G~l~d~~~~~~~~~~~~---~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~------- 218 (285)
.++..+..|.++|++|||..+..-. ++ ........+ ....+.......+....++++|....+.|.
T Consensus 75 ~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~ 154 (463)
T KOG2816|consen 75 TLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLS 154 (463)
T ss_pred HHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhhcccccchhhhhhhhhhheeeccchhHHHHHHHHHH
Confidence 3444668999999999996443210 00 000011110 111111222344455678889999999982
Q ss_pred ----hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252 219 ----LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGS 259 (285)
Q Consensus 219 ----l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
.+..++|.+.+.+.+..|+...+.+..+..+++.+......
T Consensus 155 ~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l 199 (463)
T KOG2816|consen 155 GTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFL 199 (463)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 34479999999999998988888877777666666555443
No 244
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=91.53 E-value=0.58 Score=40.70 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=62.5
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc----C-----CchHHHHHhhHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM----G-----AWPWSLRVTPVLGAC 71 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~----g-----~wr~~f~i~~~~~~~ 71 (285)
+.|++.|.+.....+.+-|..++++.|..+|.+.....++..++..+++.+.+.. + +|-..|.+.++..++
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999887642 1 255667777776655
Q ss_pred HHHHH
Q psy5252 72 AVLLI 76 (285)
Q Consensus 72 ~~~l~ 76 (285)
..++.
T Consensus 390 a~~ll 394 (403)
T PF03209_consen 390 ALVLL 394 (403)
T ss_pred HHHHH
Confidence 55443
No 245
>KOG0252|consensus
Probab=90.89 E-value=0.32 Score=43.02 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=59.0
Q ss_pred HHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-----ccCCchHHHHHhhHHHHHHHHHHHHhccCCcCc
Q psy5252 15 TIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-----VMGAWPWSLRVTPVLGACAVLLILFFMEDPERG 86 (285)
Q Consensus 15 ~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-----~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~ 86 (285)
.+-+|.||.+-|+..-|+.....-.|.++|...-..+.+ ..+ .|+.|++.+.+.++.. +..+++||++.+
T Consensus 429 ivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi-~~T~l~pEtk~~ 503 (538)
T KOG0252|consen 429 IVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIG-VRNVFIILAGCMLLGI-LFTLLIPETKGK 503 (538)
T ss_pred EeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcccc-chHHHHHHHHHHHHhH-heeEEeeccccc
Confidence 456899999999999999999999999999999999988 554 8999999998887765 555677787654
No 246
>PRK10429 melibiose:sodium symporter; Provisional
Probab=89.93 E-value=0.31 Score=43.86 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=44.5
Q ss_pred cccccccccchhHHHHhhccc-------CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252 2 VGIGEASYSTIAPTIISDLFV-------KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG 56 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~-------~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g 56 (285)
.|++.+...+...++++|..+ +++.|..+|......-+|..+++.+.+++.+..|
T Consensus 334 ~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 334 LNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777778888889999865 3445668999999999999999999999887654
No 247
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=89.88 E-value=1.9 Score=38.42 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=51.5
Q ss_pred hhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-------CchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 12 IAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-------AWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 12 ~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-------~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
+...++++..|+..-|...++..+..|+|..++..++..+.+.++ +-.+..++..+..++.. .+..++|+
T Consensus 338 P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l-~ll~lLp~ 414 (433)
T PF03092_consen 338 PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPL-PLLFLLPP 414 (433)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH-HHHHHcCC
Confidence 345678999999999999999999999999999999999988764 12234455555554433 44445554
No 248
>PRK10133 L-fucose transporter; Provisional
Probab=89.30 E-value=0.57 Score=41.70 Aligned_cols=70 Identities=11% Similarity=-0.061 Sum_probs=53.9
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV 73 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~ 73 (285)
.|++.+..+|...+...+.+|+ +.+.+.++..+ ..+|..+++++.+.+.+..|+-|..|++..+..+...
T Consensus 357 ~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 357 CSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 5788999999999999999865 56778888865 4478888999999999877436788876665544443
No 249
>PF12832 MFS_1_like: MFS_1 like family
Probab=89.18 E-value=0.25 Score=32.25 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcc
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQL 173 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~ 173 (285)
+.+.++.+.|...+... +...+++++.|.++||.++++..
T Consensus 29 ~~Gl~~~~iGil~~i~~-----~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 29 QLGLSPSQIGILSAIRP-----LIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred hcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCccHHH
Confidence 35566666666555443 44566788999999999998754
No 250
>KOG2325|consensus
Probab=89.17 E-value=0.27 Score=43.93 Aligned_cols=79 Identities=20% Similarity=0.187 Sum_probs=64.2
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.........++-++...|++++.+.++++.+.+++..++|++.......+| .|+...+..+..++...++..+.+
T Consensus 398 ~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~~~l~~~~~~ 476 (488)
T KOG2325|consen 398 FGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLVVAALWIVFLK 476 (488)
T ss_pred eccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667788999999999999999999999999999999999999999886 888877776665555555555444
No 251
>PTZ00207 hypothetical protein; Provisional
Probab=88.30 E-value=22 Score=33.17 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccc-hhhhhHHHhHHhhhh
Q psy5252 118 NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAG-SPYLIGLLSEMFRHS 170 (285)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~G~l~d~~~~~ 170 (285)
...|..........+. ++.|.-+... .+.+.+|..+ ...+.|.+-|+-.+|
T Consensus 467 G~~~~~~~~i~selFg-k~~g~~yN~~-~~a~pigs~~~n~~l~G~~Yd~ea~k 518 (591)
T PTZ00207 467 GFMAATIALVTRTIFA-KDPAKHYNFC-FLGSVLSAIFLNRLLYGEWYTQQADK 518 (591)
T ss_pred hHhHHHHHHHHHHHhc-cchHHHhhHH-hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555444444444 5556555533 2233344333 256788888887766
No 252
>KOG0253|consensus
Probab=88.12 E-value=0.32 Score=41.94 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=57.8
Q ss_pred ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252 7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPE 84 (285)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~ 84 (285)
++.+-+++.|-.|.+|.+-|+...|.-.+..-+|.++.|+++ ...+. +-..+..+.+.+.++..++..++.-|++
T Consensus 449 sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 449 SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 445667788999999999999999999999999999999999 33332 2345566677777777777766655654
No 253
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=86.87 E-value=0.23 Score=46.52 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=42.5
Q ss_pred CCcchhhhhccccCCcch--------------hhhccccchhhhhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHH
Q psy5252 200 TSLPLVSSLDETAHRSDE--------------FLAHKSDEFLAHKSDEFL-------ALQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 200 ~~~~~~~~~~~~~p~~~r--------------~l~~~~~p~~~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
.-+...+...|.++++++ .+|..+++.+.+++.+.. +|..+|.+.+++++++.+++...
T Consensus 102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAG 181 (654)
T ss_pred cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 334456777787776432 156677888888876443 58899998888888888877665
Q ss_pred hhH
Q psy5252 259 SLY 261 (285)
Q Consensus 259 ~~~ 261 (285)
.+.
T Consensus 182 ~k~ 184 (654)
T TIGR00926 182 SKM 184 (654)
T ss_pred ccc
Confidence 443
No 254
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=86.57 E-value=0.92 Score=34.11 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=45.0
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF 52 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~ 52 (285)
+.|++.+..+++.-.++.+..++++|++..+++......+.++|.++.-.+.
T Consensus 98 l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 98 LLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998888888888877665554
No 255
>KOG3810|consensus
Probab=86.16 E-value=8.9 Score=33.05 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=51.1
Q ss_pred hhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHH-HHHhhHHHHHHHHHHHHhccCCcC
Q psy5252 12 IAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWS-LRVTPVLGACAVLLILFFMEDPER 85 (285)
Q Consensus 12 ~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~-f~i~~~~~~~~~~l~~~~~~~~~~ 85 (285)
+-.++|-.-++|+++.++.|...+..-.|...|..++..+..... +... .-...+......+++..++|.++|
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~fLP~v~r 187 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLALFLPRVKR 187 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHhhCCCCch
Confidence 345677778899999999999999999999999999999887532 3222 122333344444555667776653
No 256
>PF13347 MFS_2: MFS/sugar transport protein
Probab=86.14 E-value=2.2 Score=37.77 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=48.2
Q ss_pred CcccccccccchhHHHHhhcccC-------CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVK-------DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG 56 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~-------~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g 56 (285)
+.|++.+..++...++++|..+. ++.|..+|+++....+|..++..+.+.+.+..|
T Consensus 324 l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 324 LAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 35888999999999999998873 446899999999999999999999999887654
No 257
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=83.90 E-value=0.28 Score=43.67 Aligned_cols=53 Identities=9% Similarity=0.045 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc
Q psy5252 118 NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA 175 (285)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~ 175 (285)
...|...++....++++...|.... +..++ ..+.-++.|.++||..+|.-+++
T Consensus 31 ~~~yLl~fYTdv~Gis~~~aG~ifl----v~Rii-DAi~DP~~G~i~D~t~~r~GrfR 83 (467)
T COG2211 31 VVLYLLFFYTDVFGLSAALAGTIFL----VARII-DAITDPIMGFIVDRTRSRWGRFR 83 (467)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHH----HHHHH-HHHhcchheeeeccccccccccc
Confidence 3445555555566666554443333 22333 44557799999998887665555
No 258
>PRK11462 putative transporter; Provisional
Probab=80.56 E-value=2 Score=38.56 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=38.9
Q ss_pred ccccccccchhHHHHhhccc-------CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc
Q psy5252 3 GIGEASYSTIAPTIISDLFV-------KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM 55 (285)
Q Consensus 3 G~g~~~~~~~~~~~i~~~~~-------~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~ 55 (285)
|++.+...+...++++|..+ +++.|..++.......+|..+++.+++.+.+..
T Consensus 329 g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 329 GVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555556666778887766 334456668878889999999999999988754
No 259
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=77.83 E-value=1.4 Score=38.33 Aligned_cols=69 Identities=9% Similarity=0.050 Sum_probs=51.6
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV 73 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~ 73 (285)
.|+..+..+|...++..+..| +....-|..-....+|.++-|.+.|++.+..| -+..+.+...++.+..
T Consensus 334 ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~~~~~~pllc~lyV 402 (422)
T COG0738 334 IGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 577788899999999999997 33444455555667889999999999999987 6777665555554433
No 260
>KOG0637|consensus
Probab=76.46 E-value=2.2 Score=37.90 Aligned_cols=44 Identities=25% Similarity=0.433 Sum_probs=37.8
Q ss_pred cccchhHHHHhhcccCCchhH-HHHHHHHHHhhHHHHHHHHHHHh
Q psy5252 8 SYSTIAPTIISDLFVKDLRSQ-MLAFFYFAIPIGSGLGYIVGSTA 51 (285)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~rg~-~~gi~~~~~~iG~~~g~~l~~~l 51 (285)
.....+-++++|...++++-+ +++.+.....+|..+|..+++++
T Consensus 158 ~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 158 TLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 345677899999999988877 99999999999999999988854
No 261
>KOG1237|consensus
Probab=75.51 E-value=4.5 Score=37.45 Aligned_cols=74 Identities=22% Similarity=0.397 Sum_probs=60.0
Q ss_pred cccccccccchhHHHHhhccc---C-Cch--hHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFV---K-DLR--SQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLL 75 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~---~-~~r--g~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l 75 (285)
..+|.|+.-|+..+.=+|.++ + +++ ..-+.+++...+.|..++..+--++-+..+ |.+.|.+..+...+..++
T Consensus 162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILI 240 (571)
T ss_pred heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHH
Confidence 457889999999999999998 3 222 367889999999999999999999987775 999999888776665544
Q ss_pred H
Q psy5252 76 I 76 (285)
Q Consensus 76 ~ 76 (285)
.
T Consensus 241 F 241 (571)
T KOG1237|consen 241 F 241 (571)
T ss_pred H
Confidence 3
No 262
>KOG3626|consensus
Probab=75.14 E-value=4.7 Score=38.17 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=38.2
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhh
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSL 171 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~ 171 (285)
...+++++.+.+.+...++..++|.+.+|++.|++.|.--.++
T Consensus 612 LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~tCl~W 654 (735)
T KOG3626|consen 612 LRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTTCLLW 654 (735)
T ss_pred EEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhHHHHh
Confidence 3567889999999999999999999999999999999876653
No 263
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=74.81 E-value=1.4 Score=38.22 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=46.5
Q ss_pred hhhhhccccCCcch--------------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5252 204 LVSSLDETAHRSDE--------------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQ 264 (285)
Q Consensus 204 ~~~~~~~~~p~~~r--------------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
..++.+|.++++.+ .+|..+++.+.+++.|+.||..+|.+.++.++++.+.+....+++++
T Consensus 54 i~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~ 128 (372)
T PF00854_consen 54 ISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRK 128 (372)
T ss_dssp HHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--
T ss_pred HHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcC
Confidence 46778888887731 16778899999999999999999999999888888877766554443
No 264
>KOG3098|consensus
Probab=68.92 E-value=6.7 Score=35.13 Aligned_cols=52 Identities=25% Similarity=0.464 Sum_probs=43.5
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS 53 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~ 53 (285)
++|++.+........++++.+ +++|..+.+++-.-..++..++.........
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~l 413 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLLL 413 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 368888889999999999999 7789999999998888888887776666544
No 265
>PRK03612 spermidine synthase; Provisional
Probab=67.91 E-value=13 Score=33.99 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=40.4
Q ss_pred cccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-ccCCchHHHHHhhHHH
Q psy5252 4 IGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-VMGAWPWSLRVTPVLG 69 (285)
Q Consensus 4 ~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-~~g~wr~~f~i~~~~~ 69 (285)
+-.|+..|....+..+.. .++-++..|-.+....+|.++|.++.+++.- .+| -....++.+.+.
T Consensus 122 ~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG-~~~t~~~~a~l~ 186 (521)
T PRK03612 122 LLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG-LIRTAALTGSLN 186 (521)
T ss_pred HHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Confidence 344555566655555432 2346778889999999999999999887654 565 333333344433
No 266
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=61.51 E-value=48 Score=25.64 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=36.5
Q ss_pred cccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHH
Q psy5252 8 SYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVL 68 (285)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~ 68 (285)
.-+....+++.+..|+++|.++.-+=..+..+--.+.-.++.++.+. |++...+.|+.
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~---~~~i~~igG~~ 69 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSI---FPWILLIGGLF 69 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34556778888999998888776554444444555555666666664 34555555544
No 267
>KOG3574|consensus
Probab=58.80 E-value=95 Score=27.54 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=26.6
Q ss_pred hcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252 131 VVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS 170 (285)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~ 170 (285)
..+|...|+.+.+++.+.+..|.-. ..+.+++.|.+..+
T Consensus 397 isdp~iggTymTlLNTLsnLGg~wp-~tv~l~l~D~ltv~ 435 (510)
T KOG3574|consen 397 ISDPAIGGTYMTLLNTLSNLGGNWP-GTVALWLADGLTVK 435 (510)
T ss_pred cCCcccCccHHHHHHHHHHhcCCcH-HHHHHHhcccCcee
Confidence 4466677777777776666666555 34777888887766
No 268
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=56.07 E-value=22 Score=31.32 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=45.9
Q ss_pred ccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHHhccCC
Q psy5252 5 GEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILFFMEDP 83 (285)
Q Consensus 5 g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~~~~~~ 83 (285)
+.|.....-.++ +..+++ ..++-+.+|+..+.++|+..-..+-. .+ +-|..+.+...+.++..+..++.++.+
T Consensus 125 ssg~GE~tfL~l-t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 125 SSGLGEVTFLSL-THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred hhhhhHHHHHHH-HHhcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333333444444 335543 35788999999999999887766665 43 247788877777666555555566543
No 269
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=55.77 E-value=9 Score=27.25 Aligned_cols=24 Identities=21% Similarity=0.485 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 233 EFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
|...|+++++++++++++..++++
T Consensus 31 D~tpWNysiL~Ls~vvlvi~~~LL 54 (125)
T PF15048_consen 31 DATPWNYSILALSFVVLVISFFLL 54 (125)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHH
Confidence 456799988876666555444433
No 270
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=51.54 E-value=46 Score=30.10 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=45.7
Q ss_pred hHHHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHH
Q psy5252 13 APTIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACA 72 (285)
Q Consensus 13 ~~~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~ 72 (285)
--..+.+.+|. ++|...+|-++...++...+..++++.+.+.+| |...-.+.-++.++.
T Consensus 287 ~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~G-w~~~a~i~Pii~lit 346 (472)
T TIGR00769 287 WKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYG-WLTAALITPLVMLLT 346 (472)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 34556666655 478999999999999999888888899999997 998877666655553
No 271
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=50.15 E-value=25 Score=31.40 Aligned_cols=40 Identities=5% Similarity=-0.114 Sum_probs=30.4
Q ss_pred hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252 219 LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 219 l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
+.+.++|.+.|.+.+..+...+..+.....+++...=.+.
T Consensus 160 ~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 160 FCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999998888887777777777766544433
No 272
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=49.39 E-value=36 Score=30.62 Aligned_cols=45 Identities=9% Similarity=-0.039 Sum_probs=26.2
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5252 225 EFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARAN 270 (285)
Q Consensus 225 p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (285)
+.+.|++....+|+...+ ..++.+++.+++.-..+...|.+.+.+
T Consensus 394 ~~l~~fl~t~g~~~~~il-q~v~lvi~~lIY~PFvK~~dk~~~~~~ 438 (452)
T PRK10297 394 TGLGAFFNTNGSVAALLV-ALFNLGIATLIYLPFVVVANKAQNAID 438 (452)
T ss_pred HHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655456776554 345566777777766665555444433
No 273
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=47.67 E-value=1.5e+02 Score=27.22 Aligned_cols=43 Identities=19% Similarity=0.079 Sum_probs=23.1
Q ss_pred cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc
Q psy5252 132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA 175 (285)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~ 175 (285)
..+...|....... +...+++.++.+..+++-..++.+++++.
T Consensus 290 ~~~~~rg~l~t~~i-~~y~~~~~iaGy~S~~~yk~~~g~~W~~~ 332 (521)
T PF02990_consen 290 LSPNNRGSLLTAAI-ILYALTSFIAGYVSARLYKSFGGKKWKKN 332 (521)
T ss_pred ccccCcchHHHHHH-HHHHHHhhHHHHHHHHHHHHcCCCceeeh
Confidence 34554555444222 22334445556667777777777666654
No 274
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=45.32 E-value=57 Score=21.43 Aligned_cols=21 Identities=0% Similarity=-0.077 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q psy5252 243 ITSFIEVLGGIFFLLGSLYIV 263 (285)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~ 263 (285)
...+..+++.+++.+....++
T Consensus 11 aliv~~iiaIvvW~iv~ieYr 31 (81)
T PF00558_consen 11 ALIVALIIAIVVWTIVYIEYR 31 (81)
T ss_dssp HHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555554444333
No 275
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=44.02 E-value=1.7e+02 Score=23.43 Aligned_cols=46 Identities=7% Similarity=0.062 Sum_probs=30.1
Q ss_pred cccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh
Q psy5252 8 SYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS 53 (285)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~ 53 (285)
.-+....+++.+..|+++|.++.-+=..+..+--.+--.++.++.+
T Consensus 9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~ 54 (215)
T TIGR03716 9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK 54 (215)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888999888887755444444455555556666665
No 276
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.39 E-value=75 Score=19.27 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=26.7
Q ss_pred HHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHH
Q psy5252 36 AIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLIL 77 (285)
Q Consensus 36 ~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~ 77 (285)
+..+|.+++...+......++ .+....+..+.+++...+..
T Consensus 10 s~il~~vvgyI~ssL~~~~~n-~~~~~Ii~vi~~i~~~~~~~ 50 (57)
T PF11151_consen 10 SFILGEVVGYIGSSLTGVTYN-FTTAAIIAVIFGIIVANIIA 50 (57)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHHHHHHH
Confidence 445777888777777766664 77776666666666554443
No 277
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=42.03 E-value=8.5 Score=35.42 Aligned_cols=51 Identities=25% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252 120 NWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS 170 (285)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~ 170 (285)
...|........+++++.+.+.++...+..++|.+.||++.|.+.|+--..
T Consensus 468 ~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tCl~ 518 (539)
T PF03137_consen 468 SQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTCLL 518 (539)
T ss_dssp ---------------------------------------------------
T ss_pred cccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhhhh
Confidence 334555556678889999999999999999999999999999999986544
No 278
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=40.88 E-value=1.4e+02 Score=24.52 Aligned_cols=57 Identities=11% Similarity=-0.094 Sum_probs=34.3
Q ss_pred cccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhH
Q psy5252 8 SYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPV 67 (285)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~ 67 (285)
.-+....+++.+.+|+++|-|+.=+=-.+..+=-.+--..+.++.+. |++.+.+.+.
T Consensus 32 iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l---~~~l~~~fg~ 88 (254)
T COG0861 32 IDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTL---TQPLLYIFGL 88 (254)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHH
Confidence 34556788999999999888776333233333333344445566653 6666666443
No 279
>KOG1237|consensus
Probab=38.70 E-value=32 Score=31.99 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=48.6
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM 55 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~ 55 (285)
|.|+++....+...-+--+.+|++-|+.+++++.+...+|..+...+.......-
T Consensus 467 Lig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 467 LLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred HHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688888888888999999999999999999999999999999999987776543
No 280
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=38.40 E-value=1.1e+02 Score=19.80 Aligned_cols=38 Identities=8% Similarity=0.152 Sum_probs=19.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHH
Q psy5252 30 LAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGAC 71 (285)
Q Consensus 30 ~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~ 71 (285)
--+++....++.+++.+. |++.+ +.+..+++.++-.++
T Consensus 10 e~l~~~il~~~~iisfi~-Gy~~q---~~~~~~~~~~~g~~~ 47 (76)
T PF06645_consen 10 EKLMQYILIISAIISFIV-GYITQ---SFSYTFYIYGAGVVL 47 (76)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHH
Confidence 344555555665555444 44444 355666655544333
No 281
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=36.78 E-value=55 Score=21.08 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=2.9
Q ss_pred hhHHHHH
Q psy5252 236 ALQYALF 242 (285)
Q Consensus 236 ~~~~~~~ 242 (285)
|+...|.
T Consensus 11 Gm~iVF~ 17 (79)
T PF04277_consen 11 GMGIVFL 17 (79)
T ss_pred HHHHHHH
Confidence 4444443
No 282
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=36.37 E-value=2.3e+02 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHh
Q psy5252 27 SQMLAFFYFAIPIGSGLGYIVGSTA 51 (285)
Q Consensus 27 g~~~gi~~~~~~iG~~~g~~l~~~l 51 (285)
.+.....-.+.-+|..+|...+..-
T Consensus 9 ~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667777666555444
No 283
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=36.21 E-value=2.4e+02 Score=23.07 Aligned_cols=50 Identities=26% Similarity=0.234 Sum_probs=36.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 30 LAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 30 ~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
........++|..+| .+.|.+.++++ -+....+.++...+.-.+.+....
T Consensus 39 l~~l~~~~~~G~~~G-~~~G~l~d~~g-p~~~l~iG~~~~~~GY~~~~l~~~ 88 (250)
T PF06813_consen 39 LNTLSTAGDIGSYFG-ILAGLLYDRFG-PWVVLLIGAVLGFVGYGLLWLAVS 88 (250)
T ss_pred HHHHHHHHHHHhhcc-HHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777888898876 77899999987 666667777777776655555443
No 284
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=33.90 E-value=1.4e+02 Score=19.77 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=36.2
Q ss_pred cccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHH
Q psy5252 8 SYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGAC 71 (285)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~ 71 (285)
.+.|..+.++.|.--. ..--|...+.+.+|..+|.+....+.++.. .+..+....+.+.+
T Consensus 10 ayTplLP~M~~~~~ls---~~~ag~lasaNy~GYL~GAl~~~~~~~~~~-~~~~~~~~l~~~~~ 69 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLS---LSQAGWLASANYLGYLVGALLASRLPRHSR-PRRLLRAGLLLTVL 69 (85)
T ss_pred HHHhHhHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHH
Confidence 4456555666553322 223566778888899999998888877543 44444444443333
No 285
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=33.69 E-value=1.5e+02 Score=27.00 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=43.0
Q ss_pred HHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252 15 TIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV 73 (285)
Q Consensus 15 ~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~ 73 (285)
+.+.+.+|. +++...+|-++...++-..+-..+++.+.+.+| |+..-.+.-+..++..
T Consensus 305 ~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~G-W~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 305 SQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFG-WRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhHHHHHHHH
Confidence 444555554 467888898888888888888899999999997 9988776655444443
No 286
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=32.04 E-value=78 Score=19.96 Aligned_cols=6 Identities=33% Similarity=0.385 Sum_probs=2.5
Q ss_pred hHHHHH
Q psy5252 237 LQYALF 242 (285)
Q Consensus 237 ~~~~~~ 242 (285)
-++..+
T Consensus 31 ~qW~aI 36 (68)
T PF04971_consen 31 SQWAAI 36 (68)
T ss_pred ccchhH
Confidence 344443
No 287
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=31.61 E-value=1.9e+02 Score=20.58 Aligned_cols=16 Identities=13% Similarity=0.249 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhccCCc
Q psy5252 69 GACAVLLILFFMEDPE 84 (285)
Q Consensus 69 ~~~~~~l~~~~~~~~~ 84 (285)
.+++-++.++++|+.|
T Consensus 52 ~~~~Yi~l~~~lp~~P 67 (118)
T PRK10697 52 TLVAYIILSFALDPMP 67 (118)
T ss_pred HHHHHHHHHHhccCCc
Confidence 3444445556666544
No 288
>COG1455 CelB Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
Probab=31.57 E-value=1.3e+02 Score=26.85 Aligned_cols=40 Identities=8% Similarity=-0.174 Sum_probs=22.6
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5252 225 EFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQD 265 (285)
Q Consensus 225 p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (285)
|.+.|++....+|+.... ..+..+++.++++-..+.+.|.
T Consensus 379 ~~i~~~laTg~~w~a~vl-q~i~l~v~~lIY~PF~kv~dk~ 418 (432)
T COG1455 379 PPLGAFLATGGDWRALVL-QLINLVVAVLIYLPFFKVYDKQ 418 (432)
T ss_pred hHHHHHHhccccHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666567876554 3455566666666555444443
No 289
>KOG4332|consensus
Probab=31.17 E-value=48 Score=27.75 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=48.6
Q ss_pred ccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252 5 GEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF 79 (285)
Q Consensus 5 g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~ 79 (285)
+.|.++|..+.+=+++.|.++|+..+.++..-.++=..++-..-..=.... +-|..|-++.....+..++...+
T Consensus 357 cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~-~tr~mf~icS~~~~~a~i~~~~L 430 (454)
T KOG4332|consen 357 CVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPT-TTRNMFGICSAFLFVASILQRRL 430 (454)
T ss_pred HHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCcc-ccchhhhhhHHHHHHHHHHHHHH
Confidence 467889999999999999999999999988776654443322110000112 25778888877766655544443
No 290
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=30.91 E-value=77 Score=21.97 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=19.8
Q ss_pred CchHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252 57 AWPWSLRVTPVLGACAVLLILFFMEDPE 84 (285)
Q Consensus 57 ~wr~~f~i~~~~~~~~~~l~~~~~~~~~ 84 (285)
+|+.+|++.-.++++...+.+.+.||+.
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4999988776666666666666667654
No 291
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=30.61 E-value=84 Score=16.08 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=4.2
Q ss_pred HHHHhccCCcC
Q psy5252 75 LILFFMEDPER 85 (285)
Q Consensus 75 l~~~~~~~~~~ 85 (285)
....+.||||+
T Consensus 18 ffAI~FRePPr 28 (29)
T PF01405_consen 18 FFAIFFREPPR 28 (29)
T ss_dssp HHHHHSS----
T ss_pred HhhhhccCCCC
Confidence 44556788764
No 292
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=30.12 E-value=1.6e+02 Score=25.11 Aligned_cols=25 Identities=20% Similarity=0.616 Sum_probs=17.8
Q ss_pred CchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 57 AWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 57 ~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.|++..++.++.+++.+++++
T Consensus 293 ~~~~Gy~~~l~~m~~~~~~~~~~fr 317 (322)
T COG0598 293 DWPYGYPIALILMLLLALLLYLYFR 317 (322)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHH
Confidence 5999888777776666666666554
No 293
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=28.58 E-value=86 Score=19.09 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q psy5252 236 ALQYALFITSFIEVLGGIFFLLGSL 260 (285)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (285)
||+++.++.+++.++++.++-...+
T Consensus 4 g~r~~~~~ggfVg~iG~a~Ypi~~~ 28 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAALYPIYFR 28 (58)
T ss_pred cccchhhHHHHHHHHHHHHhhhhcc
Confidence 7888888888888888877776544
No 294
>KOG4112|consensus
Probab=28.49 E-value=46 Score=22.42 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=20.4
Q ss_pred ccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5252 223 SDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQ 264 (285)
Q Consensus 223 ~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
+-.++.|...+.. .+..++.++..+++.++.+--.+.++|
T Consensus 37 iVg~i~Gf~~Qql--s~tvy~vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 37 IVGFIYGFAQQQL--SVTVYIVGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCchhhhc
Confidence 3345666666644 444555555555565554433344444
No 295
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=28.44 E-value=20 Score=30.69 Aligned_cols=29 Identities=3% Similarity=-0.023 Sum_probs=11.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 228 AHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 228 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.+....+....+..++..++.+++.+++.
T Consensus 276 ~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 276 IDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 33333333344433433333344444443
No 296
>COG2056 Predicted permease [General function prediction only]
Probab=27.23 E-value=53 Score=28.38 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5252 237 LQYALFITSFIEVLGGIFFLLGSLYIVQ 264 (285)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
...++++.+..++++.++..+...+.+|
T Consensus 190 V~~am~ip~lgMi~GLl~ai~~~YrKpR 217 (444)
T COG2056 190 VPKAMWIPGLGMIVGLLLAIFVSYRKPR 217 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 5677888888888887777666444333
No 297
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=27.07 E-value=3e+02 Score=21.35 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=16.5
Q ss_pred hhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252 139 TAEAFQILISHAFGDAGSPYLIGLLSEMFRHS 170 (285)
Q Consensus 139 ~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~ 170 (285)
...+........+|.+......+.+.++..++
T Consensus 149 ~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~ 180 (199)
T PF13386_consen 149 PLYGALLMLAFGLGTLPALLLAGLLAGKLSRR 180 (199)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33343444444455555555666666665544
No 298
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=26.84 E-value=3.4e+02 Score=21.89 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=19.8
Q ss_pred chhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252 138 STAEAFQILISHAFGDAGSPYLIGLLSEMFRHS 170 (285)
Q Consensus 138 ~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~ 170 (285)
+...+........+|........|..+|++...
T Consensus 162 S~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~ 194 (232)
T COG2836 162 SAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKS 194 (232)
T ss_pred CHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 344444444555577766666777777776543
No 299
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=26.32 E-value=53 Score=25.55 Aligned_cols=14 Identities=21% Similarity=0.762 Sum_probs=9.8
Q ss_pred chHHHHHhhHHHHH
Q psy5252 58 WPWSLRVTPVLGAC 71 (285)
Q Consensus 58 wr~~f~i~~~~~~~ 71 (285)
|+|.|++...+-++
T Consensus 3 WK~aF~~Lla~~l~ 16 (187)
T PF09911_consen 3 WKWAFLILLALNLA 16 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999986544333
No 300
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=25.24 E-value=3.7e+02 Score=24.07 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=24.8
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIV 47 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l 47 (285)
.|++.+.......++.+ .+|++ .++.+..|..++.+++..+
T Consensus 116 ~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 116 INSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence 45566666666666666 56653 3555566666666665554
No 301
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=23.17 E-value=3.7e+02 Score=21.05 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=22.8
Q ss_pred CCchhHHHHHHHHHHhhHHHHHHHHHHHhhh
Q psy5252 23 KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS 53 (285)
Q Consensus 23 ~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~ 53 (285)
.++.+++.++-..+..+|.++|..+..++..
T Consensus 136 ~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 136 ERKLGRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3456777777777778888888888777654
No 302
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=22.89 E-value=54 Score=29.50 Aligned_cols=36 Identities=22% Similarity=0.014 Sum_probs=18.0
Q ss_pred HHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 45 YIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 45 ~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
+++++++.... |||...+-..++. +..++.+.+++-
T Consensus 394 ~~l~~fl~t~g-~~~~~ilq~v~lv-i~~lIY~PFvK~ 429 (452)
T PRK10297 394 TGLGAFFNTNG-SVAALLVALFNLG-IATLIYLPFVVV 429 (452)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 44556665433 5888755443333 233344445553
No 303
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=22.59 E-value=3e+02 Score=21.48 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=28.4
Q ss_pred hcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhH
Q psy5252 19 DLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPV 67 (285)
Q Consensus 19 ~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~ 67 (285)
|++.++++.+.-.......-++..+|..+++.+.+..+ . +..++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~-~-~al~~~~~ 199 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLG-F-WALLLPAL 199 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-HHHHHHHH
Confidence 44434444455556666677777888888888887765 4 33343333
No 304
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=22.56 E-value=2.1e+02 Score=18.89 Aligned_cols=10 Identities=30% Similarity=0.135 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q psy5252 251 GGIFFLLGSL 260 (285)
Q Consensus 251 ~~~~~~~~~~ 260 (285)
.++++++..+
T Consensus 13 ~~i~yf~~~r 22 (84)
T TIGR00739 13 FLIFYFLIIR 22 (84)
T ss_pred HHHHHHheec
Confidence 3344444443
No 305
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=22.55 E-value=1.3e+02 Score=15.59 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=7.0
Q ss_pred HHHHhccCCcC
Q psy5252 75 LILFFMEDPER 85 (285)
Q Consensus 75 l~~~~~~~~~~ 85 (285)
....+.||||+
T Consensus 18 FFAIfFRepPr 28 (31)
T PRK11875 18 FFAIAFRDPPK 28 (31)
T ss_pred HHhhhccCCCC
Confidence 44456788775
No 306
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.85 E-value=2.8e+02 Score=19.12 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=20.0
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhccCC---chHHHHHhhHHH
Q psy5252 32 FFYFAIPIGSGLGYIVGSTAFSVMGA---WPWSLRVTPVLG 69 (285)
Q Consensus 32 i~~~~~~iG~~~g~~l~~~l~~~~g~---wr~~f~i~~~~~ 69 (285)
.......+..++|..++-+|=.++++ |-.+|.+.|++.
T Consensus 47 ~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 47 LIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 33344445556666666666666642 444555555543
No 307
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.80 E-value=3.1e+02 Score=19.24 Aligned_cols=53 Identities=23% Similarity=0.112 Sum_probs=26.6
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHH
Q psy5252 24 DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLI 76 (285)
Q Consensus 24 ~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~ 76 (285)
++++.+.++--+.--++.++-...-||+.+++- .=.|.+++.-++++.+.++.
T Consensus 38 s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 38 SIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 345556665555555555555566667776652 12333333334444444333
No 308
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=20.62 E-value=3.5e+02 Score=19.85 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=20.4
Q ss_pred HHhhcccCCchhHHHHHHHHHHhhHHH
Q psy5252 16 IISDLFVKDLRSQMLAFFYFAIPIGSG 42 (285)
Q Consensus 16 ~i~~~~~~~~rg~~~gi~~~~~~iG~~ 42 (285)
-+.|++|+..|....+.++.......-
T Consensus 59 aLkdi~P~~~R~~i~~~~~~~~~~~k~ 85 (137)
T PF04281_consen 59 ALKDIFPPSVRNWISSTVSTTSSAVKS 85 (137)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999988887766554443
No 309
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=20.09 E-value=3.3e+02 Score=20.14 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=20.3
Q ss_pred HHHhhcccCCchhHHHHHHHHHHhhHH
Q psy5252 15 TIISDLFVKDLRSQMLAFFYFAIPIGS 41 (285)
Q Consensus 15 ~~i~~~~~~~~rg~~~gi~~~~~~iG~ 41 (285)
.-+.|++|+..|....+.+.......-
T Consensus 56 ~ALkDm~Pp~~R~~i~~~~s~t~s~~k 82 (145)
T TIGR00986 56 YALKDIVPPTTRGWIYHKYSTTTNFVK 82 (145)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 346799999999988877776655443
Done!