Query psy5252
Match_columns 285
No_of_seqs 185 out of 1923
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 21:41:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 2.9E-22 9.8E-27 175.9 6.0 258 1-258 128-433 (451)
2 3o7q_A L-fucose-proton symport 99.8 4.4E-20 1.5E-24 161.5 5.7 242 1-249 126-423 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.7 3.2E-17 1.1E-21 145.6 9.2 80 1-81 117-198 (491)
4 2gfp_A EMRD, multidrug resista 99.6 6.3E-18 2.1E-22 145.0 -4.3 230 2-244 98-362 (375)
5 4gc0_A D-xylose-proton symport 99.5 1.9E-14 6.5E-19 127.6 6.5 84 1-85 135-225 (491)
6 2cfq_A Lactose permease; trans 99.5 1.9E-15 6.4E-20 131.7 -0.5 247 5-256 113-397 (417)
7 2xut_A Proton/peptide symporte 99.3 1.2E-12 4.2E-17 116.9 3.8 74 2-76 119-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 98.1 2.6E-06 8.9E-11 74.1 4.8 78 2-80 356-434 (451)
9 3o7q_A L-fucose-proton symport 97.9 6.5E-07 2.2E-11 77.6 -2.2 122 129-255 55-226 (438)
10 2cfq_A Lactose permease; trans 97.8 7.9E-06 2.7E-10 70.7 3.2 81 4-85 324-405 (417)
11 4aps_A DI-OR tripeptide H+ sym 97.8 1.5E-05 5.2E-10 70.2 4.1 81 2-84 396-476 (491)
12 4gc0_A D-xylose-proton symport 97.6 0.00011 3.7E-09 64.6 7.4 78 9-87 387-470 (491)
13 2xut_A Proton/peptide symporte 97.6 1.7E-05 5.8E-10 70.5 2.0 82 2-83 415-506 (524)
14 2gfp_A EMRD, multidrug resista 97.3 2.8E-05 9.5E-10 65.9 -0.5 104 150-253 45-169 (375)
15 3qnq_A PTS system, cellobiose- 43.9 32 0.0011 29.6 5.1 39 226-265 387-425 (442)
16 3arc_T Photosystem II reaction 29.1 61 0.0021 16.3 3.2 12 75-86 18-29 (32)
17 2rdd_B UPF0092 membrane protei 27.1 72 0.0025 16.5 3.5 9 252-260 14-22 (37)
18 2zxe_G FXYD10, phospholemman-l 22.7 77 0.0026 19.4 2.8 21 236-256 18-38 (74)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.85 E-value=2.9e-22 Score=175.94 Aligned_cols=258 Identities=10% Similarity=0.107 Sum_probs=163.8
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
++|++.+...+...++++|++|+|+|++++++.+.+.++|.++++.+++.+.+..++||+.|++.+++.++..++..+++
T Consensus 128 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 128 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36888999999999999999999999999999999999999999999999888763399999999988888777777778
Q ss_pred cCCcCccccCccc---c-----------ccccHHHH-HHHHhhhhhhHHHHHH--HH----HHHHHHHHHHhcCCCCcch
Q psy5252 81 EDPERGEAEGRVT---E-----------ERTSFGED-IRALCKNHRETWIFLN--LN----WSIVADMTLYVVLPLRRST 139 (285)
Q Consensus 81 ~~~~~~~~~~~~~---~-----------~~~~~~~~-~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~ 139 (285)
||++++....+.+ + ++.+.++. .+..+++|.++..... .. .........+..+....+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 287 (451)
T 1pw4_A 208 RDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 287 (451)
T ss_dssp CCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred cCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 8765432211100 0 01111221 4566777776652211 11 1111111122222112222
Q ss_pred hHHHHHHHhhhccccchhhhhHHHhHHh--hhhhcccceeee---eec---cc-c--cc-c-ccc-cccccc-ccCCcch
Q psy5252 140 AEAFQILISHAFGDAGSPYLIGLLSEMF--RHSLQLGASTLV---ANA---ML-P--SS-L-APS-LPFSSS-NSTSLPL 204 (285)
Q Consensus 140 ~~~~~~~~~~~~g~~~g~~~~G~l~d~~--~~~~~~~~~~~~---~~~---~~-~--~~-~-~~~-~~~~~~-~~~~~~~ 204 (285)
...........++.+++.++.|+++||+ ++|+........ ++. .. + .. . ... .....+ .......
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 367 (451)
T 1pw4_A 288 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHH
Confidence 2222223333466777888999999999 877654432211 111 11 1 11 1 111 111111 2223334
Q ss_pred hhhhccccCCcch-----------hh-hccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252 205 VSSLDETAHRSDE-----------FL-AHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG 258 (285)
Q Consensus 205 ~~~~~~~~p~~~r-----------~l-~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
.+.+.|.+|++.| .+ +..++|.+.|.+.|+.|++..+++.+++.+++.++....
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999987 16 788999999999999999999988888777777666543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.79 E-value=4.4e-20 Score=161.46 Aligned_cols=242 Identities=12% Similarity=0.020 Sum_probs=154.4
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh-hccCC----------------------
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF-SVMGA---------------------- 57 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~-~~~g~---------------------- 57 (285)
++|++.+...+...++++|++|+|+|++++++.+.+.++|..+++.+++.+. +..++
T Consensus 126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (438)
T 3o7q_A 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence 3688999999999999999999999999999999999999999999999998 55444
Q ss_pred --chHHHHHhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHH
Q psy5252 58 --WPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIV 124 (285)
Q Consensus 58 --wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 124 (285)
||+.|++.+++.++..++.. +.++++.++.+ ++++++.+.++.++..+++|.++.... ...|.+.
T Consensus 206 ~~w~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (438)
T 3o7q_A 206 LSVQTPYMIIVAIVLLVALLIM-LTKFPALQSDN-HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR 283 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HCCCCCCTTTC-CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHcCCcccccc-cccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877666654443 33332222111 112233345567788888888766211 2233444
Q ss_pred H-HHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee--e---ccc-ccc--cccccccc
Q psy5252 125 A-DMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA--N---AML-PSS--LAPSLPFS 195 (285)
Q Consensus 125 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~--~---~~~-~~~--~~~~~~~~ 195 (285)
+ ....++.++...+..... ..++.+++.++.|+++||+++|+......+.. . ... +.. +....+..
T Consensus 284 ~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 358 (438)
T 3o7q_A 284 YAVEEIPGMTAGFAANYLTG-----TMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCS 358 (438)
T ss_dssp HHHHHSTTCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HhhhccCCcchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4 222224443333333332 23566677889999999999997655422110 0 111 111 11111111
Q ss_pred ccc-cCCcchhhhhccccCCcch---------hhhccccchhhhhhhhhhh-hHHHHHHHHHHHH
Q psy5252 196 SSN-STSLPLVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFLA-LQYALFITSFIEV 249 (285)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~ 249 (285)
.+. ...+...+...|.+|++.+ .++..++|.+.|.+.|+.| ++..+++..++.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 359 AFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHTTHHHHHHHHHHSSCGGGHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 222 2333346666888887743 2667899999999999998 9888876544433
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.70 E-value=3.2e-17 Score=145.56 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=68.6
Q ss_pred CcccccccccchhHHHHhhcccCCc--hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDL--RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILF 78 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~--rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~ 78 (285)
++|++.+...+...++++|++|+++ |++++++++.+.++|..++|.+++.+.+..+ ||+.|++.++..++..++..+
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 3688899999999999999999998 7888999999999999999999999999886 999999988777666555544
Q ss_pred hcc
Q psy5252 79 FME 81 (285)
Q Consensus 79 ~~~ 81 (285)
..+
T Consensus 196 ~~~ 198 (491)
T 4aps_A 196 GGK 198 (491)
T ss_dssp HHH
T ss_pred hCc
Confidence 433
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.62 E-value=6.3e-18 Score=145.00 Aligned_cols=230 Identities=14% Similarity=0.055 Sum_probs=143.1
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
+|++.+...+...+++.|++|+|+|++++++.+.+.++|..+++.+++.+.+..+ ||+.|++.+++.++..++..+.+|
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 176 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLFLLVLCAGVTFSMARWMP 176 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHCc
Confidence 5788889999999999999999999999999999999999999999999998886 999999988887776654555667
Q ss_pred CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--HHHHHH---------HHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252 82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--NLNWSI---------VADMTLYVVLPLRRSTAEAFQILISHA 150 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
|+++++++++ +. ++.++..+++|.++.... ...+.. .+....++.++...+ .......
T Consensus 177 ~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-----~~~~~~~ 245 (375)
T 2gfp_A 177 ETRPVDAPRT--RL----LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS-----ILFILPI 245 (375)
T ss_dssp CCSTTTCCCC--CT----TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHH-----HHHHTHH
T ss_pred ccCCCCcccc--cH----HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHH
Confidence 6554322211 11 122344556666554221 111111 111111233222222 2223334
Q ss_pred ccccchhhhhHHHhHHhhhhhccccee-eeeec-----cc--c-cc--c-ccccccccc-ccCCcchhhhhccccCCcch
Q psy5252 151 FGDAGSPYLIGLLSEMFRHSLQLGAST-LVANA-----ML--P-SS--L-APSLPFSSS-NSTSLPLVSSLDETAHRSDE 217 (285)
Q Consensus 151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~-~~~~~-----~~--~-~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r 217 (285)
++.+++.++.+++.||.+++....... ...+. .. . +. . ....+...+ ........+...|..| ++|
T Consensus 246 ~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~ 324 (375)
T 2gfp_A 246 PAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLA 324 (375)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-ccc
Confidence 666777889999999988732211111 11111 11 0 11 1 111111122 2344556778889988 666
Q ss_pred -----------hhhccccchhhhhhhhhhhhHHHHHHH
Q psy5252 218 -----------FLAHKSDEFLAHKSDEFLALQYALFIT 244 (285)
Q Consensus 218 -----------~l~~~~~p~~~G~~~~~~~~~~~~~~~ 244 (285)
.++..++|.+.|.+.|..+++..+...
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 166789999999999888887777653
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.50 E-value=1.9e-14 Score=127.57 Aligned_cols=84 Identities=23% Similarity=0.373 Sum_probs=68.4
Q ss_pred CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-------CchHHHHHhhHHHHHHH
Q psy5252 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-------AWPWSLRVTPVLGACAV 73 (285)
Q Consensus 1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-------~wr~~f~i~~~~~~~~~ 73 (285)
++|+|.|...+.+..+++|+.|+++|++..++.+.+..+|..+++.++..+....+ +||..+.+..+..++..
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh
Confidence 36899999999999999999999999999999999999999999999887765321 37777776666665544
Q ss_pred HHHHHhccCCcC
Q psy5252 74 LLILFFMEDPER 85 (285)
Q Consensus 74 ~l~~~~~~~~~~ 85 (285)
+..++.||+|+
T Consensus 215 -~~~~~~peSp~ 225 (491)
T 4gc0_A 215 -MLLYTVPESPR 225 (491)
T ss_dssp -HHGGGSCCCHH
T ss_pred -hhhhcCCCChH
Confidence 55567788765
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.49 E-value=1.9e-15 Score=131.70 Aligned_cols=247 Identities=9% Similarity=-0.045 Sum_probs=135.0
Q ss_pred ccccccchhHHHHhhcccC--CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 5 GEASYSTIAPTIISDLFVK--DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 5 g~~~~~~~~~~~i~~~~~~--~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
+.+..++.....+.++.++ ++++..++......++|..++|.+++++.+ .+ ||+.|++.++..++..++..+..||
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~-~~~~f~~~~~~~~~~~~~~~~~~~~ 190 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN-NQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-SHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-hhHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3344444445555555543 356777888888899999999999999987 44 9999998877655444333222334
Q ss_pred CcCccc-cC-ccccccccHHHHHHHHhhhhhhHHHHHH-----------HHHHHHHHHHHHhcCCCCcc-hhHHHHHHHh
Q psy5252 83 PERGEA-EG-RVTEERTSFGEDIRALCKNHRETWIFLN-----------LNWSIVADMTLYVVLPLRRS-TAEAFQILIS 148 (285)
Q Consensus 83 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 148 (285)
++++.+ ++ +++++++...+.++..+++|.++..... ..|.+.+... ..+....+ ...+.. ...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~ 267 (417)
T 2cfq_A 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS--FFATGEQGTRVFGYV-TTM 267 (417)
T ss_dssp CSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSSHHHHTHHHHHH-HHH
T ss_pred cccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCChhHHHHH-HHH
Confidence 322111 11 0111111122345667777776542211 1122222211 11111111 111222 222
Q ss_pred hhccccchhhhhHHHhHHhhhhhcccceeee--e---eccc-ccc--cccc-cccccc-ccCCcchhhhhccccCCcchh
Q psy5252 149 HAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NAML-PSS--LAPS-LPFSSS-NSTSLPLVSSLDETAHRSDEF 218 (285)
Q Consensus 149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~~~-~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~r~ 218 (285)
..++.+++.++.|+++||+++|+........ + .... ++. +... .+.... .....+....+.|.+|++.|.
T Consensus 268 ~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g 347 (417)
T 2cfq_A 268 GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA 347 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 2344556678999999999999765542211 1 1111 111 1111 111111 112223456788999999881
Q ss_pred ------------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252 219 ------------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 219 ------------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
+++.++|.+.|.+.|+.|++..|.+.+++.+++.++..
T Consensus 348 ~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 45579999999999988988888877777777666543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.28 E-value=1.2e-12 Score=116.92 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=64.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHH---HHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAF---FYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLI 76 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi---~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~ 76 (285)
+|++.+...+...++++|++|+++|+++.+. ++.+.++|..++|.+++.+.+..+ ||+.|++.+++.++..++.
T Consensus 119 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 119 IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHH
Confidence 5888899999999999999999999877666 999999999999999999998886 9999999888776655444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.08 E-value=2.6e-06 Score=74.05 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=66.7
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhh-HHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPI-GSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM 80 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~i-G~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~ 80 (285)
.|++.+...+...+++.|.+|+++|++++|+++....+ |..+++.+.+.+.+..+ |+..|++.+++.++..++..+..
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777889999999999999999999999999 99999999999999886 99999998888777765554443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.91 E-value=6.5e-07 Score=77.64 Aligned_cols=122 Identities=9% Similarity=0.033 Sum_probs=73.0
Q ss_pred HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eec---cc-ccc--cccc-ccccc
Q psy5252 129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANA---ML-PSS--LAPS-LPFSS 196 (285)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~---~~-~~~--~~~~-~~~~~ 196 (285)
.++.+..+.+...+.. .++..++.++.|+++||+|||+......+. +.. .. ++. +.+. .+...
T Consensus 55 ~~g~s~~~~g~~~~~~-----~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 129 (438)
T 3o7q_A 55 AFTLTNFQAGLIQSAF-----YFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAA 129 (438)
T ss_dssp HSCCCSHHHHHHHHHH-----HHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHh
Confidence 3455554444444433 366677788999999999999876653211 111 11 111 1111 11111
Q ss_pred c-ccCCcchhhhhccccCCcchh-----------hhccccchhhhhhh-hhhh-------------------------hH
Q psy5252 197 S-NSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSD-EFLA-------------------------LQ 238 (285)
Q Consensus 197 ~-~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~-~~~~-------------------------~~ 238 (285)
+ ........+++.|.+|+++|. +|..++|.+.+.+. +..+ |+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 209 (438)
T 3o7q_A 130 GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQ 209 (438)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHH
Confidence 2 233344578899999999982 56689999999887 5544 88
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5252 239 YALFITSFIEVLGGIFF 255 (285)
Q Consensus 239 ~~~~~~~~~~~~~~~~~ 255 (285)
+.++..++...+..+++
T Consensus 210 ~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 210 TPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88876665555544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.82 E-value=7.9e-06 Score=70.67 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=64.7
Q ss_pred cccccccchhHHHHhhcccCCchhHHHHH-HHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 4 IGEASYSTIAPTIISDLFVKDLRSQMLAF-FYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 4 ~g~~~~~~~~~~~i~~~~~~~~rg~~~gi-~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
++.+...+....+++|.+|++.|+++.++ ++....+|..++|.+++.+.+..+ ++..|.+.+++.++..++.....||
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 33344455667899999999999999999 588889999999999999998775 9999998888877776665555665
Q ss_pred CcC
Q psy5252 83 PER 85 (285)
Q Consensus 83 ~~~ 85 (285)
+++
T Consensus 403 ~~~ 405 (417)
T 2cfq_A 403 PGP 405 (417)
T ss_dssp SCT
T ss_pred CCc
Confidence 443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.76 E-value=1.5e-05 Score=70.16 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=65.5
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME 81 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~ 81 (285)
.|++.+...+...+++.|.+|+++|++++|+.+....+|..+++.+.+.+.+. + +.+.|.+.+++.++..++..+..+
T Consensus 396 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 396 VILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-S-EVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-S-TTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788899999999999999999999999999999999999999988774 3 778888888887777766666555
Q ss_pred CCc
Q psy5252 82 DPE 84 (285)
Q Consensus 82 ~~~ 84 (285)
+.+
T Consensus 474 ~~~ 476 (491)
T 4aps_A 474 RIQ 476 (491)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.62 E-value=0.00011 Score=64.64 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=64.5
Q ss_pred ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh------ccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252 9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS------VMGAWPWSLRVTPVLGACAVLLILFFMED 82 (285)
Q Consensus 9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~------~~g~wr~~f~i~~~~~~~~~~l~~~~~~~ 82 (285)
..|....+.+|.+|.+.|++++|+.+....++..+++.+.+.+.+ ..+ +...|++.++++++..+..++++||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHheecC
Confidence 346677899999999999999999999999999998888766643 233 6678888898888888888899999
Q ss_pred CcCcc
Q psy5252 83 PERGE 87 (285)
Q Consensus 83 ~~~~~ 87 (285)
++.+.
T Consensus 466 Tkg~t 470 (491)
T 4gc0_A 466 TKGKT 470 (491)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 87654
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.61 E-value=1.7e-05 Score=70.52 Aligned_cols=82 Identities=10% Similarity=0.160 Sum_probs=60.3
Q ss_pred cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-Cc---------hHHHHHhhHHHHH
Q psy5252 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AW---------PWSLRVTPVLGAC 71 (285)
Q Consensus 2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~w---------r~~f~i~~~~~~~ 71 (285)
.|++.+...+...+++.|.+|+++|++++|++++...+|..+++.+.+.+.+..+ +| +..|++.+.+.++
T Consensus 415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
T 2xut_A 415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAIL 494 (524)
T ss_dssp HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHH
Confidence 4667777888899999999999999999999999999999999999999886321 13 3347777776666
Q ss_pred HHHHHHHhccCC
Q psy5252 72 AVLLILFFMEDP 83 (285)
Q Consensus 72 ~~~l~~~~~~~~ 83 (285)
..++..++.++.
T Consensus 495 ~~~~~~~~~~~~ 506 (524)
T 2xut_A 495 AAIVFALYARSY 506 (524)
T ss_dssp HHHHHC------
T ss_pred HHHHHHHHHHHh
Confidence 665554444443
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.31 E-value=2.8e-05 Score=65.93 Aligned_cols=104 Identities=8% Similarity=-0.045 Sum_probs=66.1
Q ss_pred hccccchhhhhHHHhHHhhhhhcccceeeeee--c---cc-ccc--ccc-ccccccccc-CCcchhhhhccccCCcchh-
Q psy5252 150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN--A---ML-PSS--LAP-SLPFSSSNS-TSLPLVSSLDETAHRSDEF- 218 (285)
Q Consensus 150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~--~---~~-~~~--~~~-~~~~~~~~~-~~~~~~~~~~~~~p~~~r~- 218 (285)
.++..++.++.|+++||+|||+.......... . .. ++. +.. ..+...+.+ ......+.+.|.+|+++|.
T Consensus 45 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (375)
T 2gfp_A 45 LLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRH 124 (375)
T ss_dssp HHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHH
Confidence 36666778899999999999976654221110 0 11 111 111 111111222 3334567888999988871
Q ss_pred ----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy5252 219 ----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGI 253 (285)
Q Consensus 219 ----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 253 (285)
++..++|.+.|.+.+..+|+..+.+.++..++..+
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 125 ANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 56689999999999999999999877666555544
No 15
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=43.94 E-value=32 Score=29.56 Aligned_cols=39 Identities=5% Similarity=-0.136 Sum_probs=21.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5252 226 FLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQD 265 (285)
Q Consensus 226 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (285)
.+.|++....+|+... ...+..+++.+++.-..+.+.|+
T Consensus 387 ~i~~~l~t~g~~~~~i-l~~~~~~i~~~iy~PF~k~~dk~ 425 (442)
T 3qnq_A 387 LFSGYLGSGGKISGVI-LQLVNFALAFVIYLPFLKIWDKQ 425 (442)
T ss_dssp HHHHHHTTTSCTHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445655533476544 34455566677666665555444
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=29.08 E-value=61 Score=16.28 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=7.9
Q ss_pred HHHHhccCCcCc
Q psy5252 75 LILFFMEDPERG 86 (285)
Q Consensus 75 l~~~~~~~~~~~ 86 (285)
....+.||||+-
T Consensus 18 FFAI~FRePPri 29 (32)
T 3arc_T 18 FFAIFFREPPRI 29 (32)
T ss_dssp HHHHHTSCCCCC
T ss_pred HHhhhhcCCCCC
Confidence 445677888763
No 17
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=27.10 E-value=72 Score=16.48 Aligned_cols=9 Identities=22% Similarity=0.286 Sum_probs=4.1
Q ss_pred HHHHHHHhh
Q psy5252 252 GIFFLLGSL 260 (285)
Q Consensus 252 ~~~~~~~~~ 260 (285)
++.+++..|
T Consensus 14 ~ifYFl~iR 22 (37)
T 2rdd_B 14 LIFYFMILR 22 (37)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHHhh
Confidence 344454443
No 18
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=22.69 E-value=77 Score=19.40 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy5252 236 ALQYALFITSFIEVLGGIFFL 256 (285)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ 256 (285)
.+|..=++.+.++++.+++++
T Consensus 18 tLRigGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HheeccchhHHHHHHHHHHHH
Confidence 344333334444444444333
Done!