RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5252
(285 letters)
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 50.5 bits (121), Expect = 3e-07
Identities = 39/202 (19%), Positives = 68/202 (33%), Gaps = 8/202 (3%)
Query: 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
+ G+G + A +I+D F + R + L +G+ LG ++G + + W
Sbjct: 94 LQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG-LLASLFGWRA 152
Query: 61 SLRV-TPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNL 119
+ + + AVL L P + E + L ++ + L
Sbjct: 153 AFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALL 212
Query: 120 NWSIVADMTLYVVLPLRR-----STAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLG 174
+ L LPL + S A +L A L+G LS+ +L
Sbjct: 213 LFGFAF-FALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLL 271
Query: 175 ASTLVANAMLPSSLAPSLPFSS 196
+ L+ SL SS
Sbjct: 272 LALLLLILAALGLALLSLTESS 293
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 50.0 bits (120), Expect = 4e-07
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
++G+G + A +I++ F R + L F +G+ LG ++G + W W
Sbjct: 96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG-LLAESLGWRW 154
Query: 61 SLRVTPVLGACAVLLILFFM 80
+ +LG LL+LF +
Sbjct: 155 LFLILAILGLLLALLLLFLL 174
Score = 33.4 bits (77), Expect = 0.12
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
++G G T+ S+L + R F +G LG ++ G +
Sbjct: 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGG 332
Query: 61 SLRVTPVLGACAVLLILFFM 80
+ L A LL+L
Sbjct: 333 VFLILAALALLAALLLLLLP 352
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 37.7 bits (88), Expect = 0.005
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--VMGAWP 59
+GIG S + P +S++ K LR + + + AI G + Y GS S W
Sbjct: 137 LGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR 196
Query: 60 WSLRVTPVLGACAVLLILFFMEDP 83
L + + L + F E P
Sbjct: 197 IPLGLQLIPAGLLFLGLFFLPESP 220
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 33.8 bits (78), Expect = 0.032
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
+ G G A +I+D++ + R L I +G LG +G +G W
Sbjct: 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRA 118
Query: 61 SLRVTPVLGACAVLLILFFMED 82
+L A +L+ F + +
Sbjct: 119 PFLFLAILALAAFILLAFLLPE 140
>gnl|CDD|182031 PRK09694, PRK09694, helicase Cas3; Provisional.
Length = 878
Score = 34.0 bits (78), Expect = 0.087
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 126 DMTLYVVLPLRRSTAEAF----QILI---SHAFGDAGSPYLIGLLSEMFRHSLQLGASTL 178
D L VLP++ F +LI HA+ DA Y+ GLL + + Q G S +
Sbjct: 419 DQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DA---YMYGLLEAVLKAQAQAGGSVI 474
Query: 179 VANAMLPSSLAPSL------PFSSSNSTSLPLVSSLDETAHRSDEFLAH 221
+ +A LP++L L S++ PL++ + + AH
Sbjct: 475 LLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAH 523
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 33.1 bits (76), Expect = 0.13
Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
Query: 1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGY-IVGSTAFSVMGAWP 59
++G EA + I++ F R+ ++ F A +G +G +VG + +W
Sbjct: 91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL--IHFSWQ 148
Query: 60 WSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNL 119
W+ + VLG +L L F+ DP + +A+ EE+ + A + +
Sbjct: 149 WAFIIEGVLGIIWGVLWLKFIPDPPQ-KAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQ 207
Query: 120 NWSIVADMTLYVV 132
++ D ++ +
Sbjct: 208 IKELLKDRRVWGL 220
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known
as Stage III sporulation protein F, and related
proteins. The integral membrane protein SpoVB has been
implicated in the biosynthesis of the peptidoglycan
component of the spore cortex in Bacillus subtilis. This
model represents a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Proteins from
the MATE family are involved in exporting metabolites
across the cell membrane and are often responsible for
multidrug resistance (MDR).
Length = 434
Score = 32.8 bits (76), Expect = 0.17
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 29 MLAFFYFAIPIGSGLGYIV-GSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGE 87
+L Y +P+G GL Y G+T +V+GA L VLL + + E
Sbjct: 158 ILVLAYLLLPVGGGLYYAAAGATFGAVIGA----------LAGLLVLLYYYRKKRRELKR 207
Query: 88 AEGRVTEERTSFGEDIRALCK 108
+ + S E ++ L
Sbjct: 208 LLRKSPRSKISTKEILKELLS 228
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 33.1 bits (75), Expect = 0.19
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 13 APTIISDLFVKDL---RSQMLAFFYFAIPI--GSGLGYIVGSTAFSVMGAWPWSLRVTPV 67
P S LF+ +L +++ L + P +G G G ++ G W W + +
Sbjct: 146 GPAGASPLFIGELMSNKTKFLGLLIVSAPTIAMNGAGPYFGQR-LAIQGNWRWIFYIYII 204
Query: 68 LGACAVLLILFFMEDPERGEAEGRVTEER 96
+ A AVLLI+ + P + G+ +R
Sbjct: 205 MSAIAVLLIIIWYHPPSFAQLHGKKARKR 233
>gnl|CDD|235682 PRK06041, PRK06041, flagellar assembly protein J; Reviewed.
Length = 553
Score = 32.6 bits (75), Expect = 0.21
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 152 GDAGSPYLIGLLSEMFRHSLQLGASTLVA 180
G+ GS YLI SEMF +++LG V
Sbjct: 389 GETGS-YLIQKFSEMFVDAVELGGDPKVI 416
>gnl|CDD|235400 PRK05305, PRK05305, phosphatidylserine decarboxylase;
Provisional.
Length = 206
Score = 31.3 bits (72), Expect = 0.35
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 42 GLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPER 85
G +I + ++ W +G L L+F DPER
Sbjct: 6 GYPFIAAAALVLLILGLLW--WPLAWIGLLLTLFCLYFFRDPER 47
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 31.1 bits (71), Expect = 0.74
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 2 VGIGEASYSTIAPTIISDLFVKDLRSQM-LAFFYFAIPIGSGLGYIVGS 49
GIG T+ + I D VK S + L + G +G+++GS
Sbjct: 149 RGIGATPIFTLGISYIDD-NVKSKNSPLYLGILFTMAMFGPAIGFLLGS 196
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 30.7 bits (70), Expect = 0.83
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFF----YFAIPIGSGLGYIVGSTAFSVMGA 57
VG+G S + P IS++ K LR + + + F I + + +G + + S
Sbjct: 111 VGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSD--G 168
Query: 58 WPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRE 112
W L + V +L+ L F+ + R EE + +R + +E
Sbjct: 169 WRIPLGLQFVPAI-LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQE 222
>gnl|CDD|224866 COG1955, FlaJ, Archaeal flagella assembly protein J [Cell motility
and secretion / Intracellular trafficking and
secretion].
Length = 527
Score = 30.4 bits (69), Expect = 1.3
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 127 MTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVANAMLPS 186
LY L + + +A+++ + GS YLI SE+F ++ LG V ++
Sbjct: 341 RRLYKRLAMGIDSNKAWRLFS----AETGS-YLISKFSEIFTDAIDLGGDPDVVGEIISE 395
Query: 187 S 187
+
Sbjct: 396 N 396
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 28.9 bits (65), Expect = 3.3
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIV-------GSTAFSVM 55
GIG S ++P I+++ +R ++++F FAI G + Y V G ++
Sbjct: 131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190
Query: 56 GAWPWSLRVTPVLGACAVLLILFFMEDP 83
W + + ++L+ F E P
Sbjct: 191 DGWRYMFASEAIPALLFLMLLYFVPETP 218
>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam
antibiotics, the antitumor agent, bestatin, and various
protease inhibitors). [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 641
Score = 28.6 bits (64), Expect = 3.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 23 KDLRSQMLAFFYFAIPIGS 41
LR + +FFYFAI GS
Sbjct: 119 LSLRFRFFSFFYFAINAGS 137
>gnl|CDD|224873 COG1962, MtrH, Tetrahydromethanopterin S-methyltransferase, subunit
H [Coenzyme metabolism].
Length = 313
Score = 28.6 bits (64), Expect = 4.3
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 19 DLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
D V L S A I + + LG VGS + AW W
Sbjct: 198 DTAVTPLGSGAGAAVRATIAVKAKLGLPVGSGIHNAPSAWDW 239
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.
Length = 622
Score = 28.3 bits (63), Expect = 5.3
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 40 GSGLGYIVGSTAFSVMGA--WPWSLRVTPVLGACAVLL 75
G L VG +M W +S+ +GA L+
Sbjct: 124 GQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLM 161
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 27.8 bits (62), Expect = 7.7
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 11 TIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGA 70
++ P+++SD+F + F Y A + G ++ S A + +G T ++
Sbjct: 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF-----EYTFIVTG 368
Query: 71 CAVLLILF 78
L L
Sbjct: 369 AFALTSLA 376
>gnl|CDD|110955 pfam02007, MtrH, Tetrahydromethanopterin S-methyltransferase MtrH
subunit. The enzyme tetrahydromethanopterin
S-methyltransferase EC:2.1.1.86 is composed of eight
subunits. The enzyme is a membrane- associated enzyme
complex which catalyzes an energy-conserving,
sodium-ion-translocating step in methanogenesis from
hydrogen and carbon dioxide.
Length = 296
Score = 27.4 bits (61), Expect = 9.5
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 17 ISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
+ D V L S A I + + G VGS + AW W
Sbjct: 188 LIDTAVTPLGSGAGAAVKATIAVKAKFGLPVGSGIHNAPSAWDW 231
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and citrate
hydro-lyase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle.
Cis-aconitate is formed as an intermediary product
during the course of the reaction. In eukaryotes two
isozymes of aconitase are known to exist: one found in
the mitochondrial matrix and the other found in the
cytoplasm. This is the mitochondrial form. The
mitochondrial product is coded by a nuclear gene. Most
members of this subfamily are mitochondrial but there
are some bacterial members.
Length = 412
Score = 27.4 bits (61), Expect = 9.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 38 PIGSGLGYIV----GSTAFSVMGAWPWSLRVTPVLG 69
P GLG I G+ A VM PW L+ V+G
Sbjct: 102 PNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIG 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.400
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,787,976
Number of extensions: 1452760
Number of successful extensions: 1626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1616
Number of HSP's successfully gapped: 71
Length of query: 285
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 189
Effective length of database: 6,679,618
Effective search space: 1262447802
Effective search space used: 1262447802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)