RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5252
         (285 letters)



>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 35.9 bits (81), Expect = 0.005
 Identities = 8/84 (9%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVMGAWP 59
           +               I+  F     + +    + F   +      ++    +  +G + 
Sbjct: 321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQ 379

Query: 60  WSLRVTPVLGACAVLLILFFMEDP 83
            +  V  ++     L+ +F +  P
Sbjct: 380 GAYLVLGLVALGFTLISVFTLSGP 403


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 32.0 bits (71), Expect = 0.085
 Identities = 12/85 (14%), Positives = 22/85 (25%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           ++G        +      +L  K        F      +G  +              W  
Sbjct: 352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 411

Query: 61  SLRVTPVLGACAVLLILFFMEDPER 85
              V       AV+L++  M   +R
Sbjct: 412 GFMVMIGGSILAVILLIVVMIGEKR 436


>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa
           acuminata), 1,3-beta-glucanase [TaxId: 4641]}
          Length = 312

 Score = 27.7 bits (61), Expect = 1.7
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 172 QLGASTLVANAMLPSSLAPSLPF--SSSNSTSLPLVSSLDETAHRSDEFLAHKSDEFLAH 229
           Q+  ST V   +L +S  PS     S++ +   P+V  L          L +    F   
Sbjct: 124 QIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASN---GAPLLVNVYPYFSYT 180

Query: 230 KSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANREIAGEDN 278
            +   ++L YALF  S + V  G F        + D   A  E  G  N
Sbjct: 181 GNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGAN 229


>d2h85a2 d.294.1.2 (A:191-345) Nsp15, C-terminal domain {SARS
           coronavirus [TaxId: 227859]}
          Length = 155

 Score = 25.5 bits (56), Expect = 5.1
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 194 FSSSNSTSLPLVSSLDETAHRSDEFLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGI 253
           F+ S         S  ET     +FL    DEF+     E  A ++ ++       LGG+
Sbjct: 4   FTQSRDLEDFKPRSQMET-----DFLELAMDEFIQRYKLEGYAFEHIVYGDFSHGQLGGL 58

Query: 254 FFLLG 258
             ++G
Sbjct: 59  HLMIG 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 994,433
Number of extensions: 43129
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 8
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)