Query psy5254
Match_columns 147
No_of_seqs 139 out of 1346
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 21:43:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 4.9E-45 1.1E-49 319.4 13.4 142 4-146 419-560 (821)
2 cd01381 MYSc_type_VII Myosin m 100.0 1.4E-44 3E-49 312.2 13.3 141 5-146 319-460 (671)
3 cd01384 MYSc_type_XI Myosin mo 100.0 1.4E-44 3.1E-49 312.0 12.6 141 5-146 325-465 (674)
4 cd01383 MYSc_type_VIII Myosin 100.0 1.9E-44 4.1E-49 311.4 13.1 142 4-146 321-463 (677)
5 cd01387 MYSc_type_XV Myosin mo 100.0 3.5E-44 7.6E-49 309.9 13.1 141 4-146 319-459 (677)
6 cd01378 MYSc_type_I Myosin mot 100.0 3.7E-44 8.1E-49 309.8 12.9 142 5-147 323-467 (674)
7 cd01379 MYSc_type_III Myosin m 100.0 3.8E-44 8.2E-49 308.6 12.7 142 4-146 325-471 (653)
8 cd01377 MYSc_type_II Myosin mo 100.0 4.7E-44 1E-48 309.9 13.1 141 5-146 332-473 (693)
9 cd01385 MYSc_type_IX Myosin mo 100.0 5.6E-44 1.2E-48 309.3 12.4 141 5-146 331-475 (692)
10 cd01382 MYSc_type_VI Myosin mo 100.0 8.1E-44 1.8E-48 309.2 12.6 140 5-146 356-495 (717)
11 COG5022 Myosin heavy chain [Cy 100.0 6.9E-44 1.5E-48 317.3 11.9 141 5-146 386-527 (1463)
12 cd01380 MYSc_type_V Myosin mot 100.0 1.4E-43 2.9E-48 307.0 13.0 140 5-146 323-465 (691)
13 smart00242 MYSc Myosin. Large 100.0 4.2E-43 9.1E-48 303.8 12.6 141 5-146 327-467 (677)
14 cd00124 MYSc Myosin motor doma 100.0 3.2E-42 6.9E-47 298.6 12.4 142 4-146 319-460 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 2.2E-41 4.8E-46 295.2 13.2 142 5-146 331-492 (767)
16 PF00063 Myosin_head: Myosin h 100.0 1.6E-41 3.4E-46 294.9 11.9 141 5-146 321-463 (689)
17 KOG0164|consensus 100.0 1.6E-39 3.4E-44 274.4 10.3 142 4-146 327-474 (1001)
18 KOG0161|consensus 100.0 5E-38 1.1E-42 289.0 9.4 141 5-147 406-547 (1930)
19 KOG0162|consensus 100.0 1.1E-36 2.3E-41 257.7 9.5 141 5-146 340-486 (1106)
20 KOG0163|consensus 100.0 2.7E-36 5.8E-41 256.1 10.9 141 4-146 409-549 (1259)
21 KOG0160|consensus 100.0 2.4E-34 5.1E-39 250.2 10.4 141 4-146 324-465 (862)
22 KOG4229|consensus 100.0 2.8E-31 6.1E-36 235.5 7.9 141 5-146 383-525 (1062)
23 KOG0967|consensus 98.6 2.6E-08 5.6E-13 85.1 4.0 64 1-64 205-268 (714)
24 PLN03113 DNA ligase 1; Provisi 97.7 2E-05 4.4E-10 69.8 2.0 64 1-64 235-298 (744)
25 PF04675 DNA_ligase_A_N: DNA l 97.4 6.8E-05 1.5E-09 55.1 1.0 61 4-64 108-168 (177)
26 PRK01109 ATP-dependent DNA lig 96.3 0.002 4.3E-08 56.1 1.7 64 2-65 110-173 (590)
27 TIGR00574 dnl1 DNA ligase I, A 96.3 0.0044 9.6E-08 53.0 3.7 62 3-64 51-112 (514)
28 PRK03180 ligB ATP-dependent DN 96.0 0.0023 5E-08 54.8 0.7 62 4-65 70-131 (508)
29 PRK09247 ATP-dependent DNA lig 92.9 0.068 1.5E-06 46.2 2.2 54 4-64 101-154 (539)
30 PF10256 Erf4: Golgin subfamil 59.5 13 0.00028 25.2 3.2 75 23-101 30-105 (118)
31 PF01150 GDA1_CD39: GDA1/CD39 30.4 47 0.001 27.7 2.6 35 22-56 135-173 (434)
32 PF04540 Herpes_UL51: Herpesvi 30.2 1.5E+02 0.0034 21.7 4.9 34 2-35 38-71 (164)
33 PF11822 DUF3342: Domain of un 26.5 1.8E+02 0.0038 23.8 5.1 53 26-82 56-108 (317)
34 PF01402 RHH_1: Ribbon-helix-h 24.3 1.1E+02 0.0023 16.0 2.6 24 10-34 8-31 (39)
35 PF08621 RPAP1_N: RPAP1-like, 24.0 1.6E+02 0.0034 17.1 4.0 34 5-38 13-46 (49)
36 PF08708 PriCT_1: Primase C te 23.7 99 0.0022 18.7 2.7 21 4-24 50-70 (71)
37 KOG2798|consensus 21.6 1.6E+02 0.0034 24.4 4.0 43 2-44 98-147 (369)
No 1
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=4.9e-45 Score=319.41 Aligned_cols=142 Identities=20% Similarity=0.211 Sum_probs=137.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
..|+|+++|..+||++|+++|++||+|+|+.||..|.+......+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus 419 ~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~-~NSfEQLcINy~NEkLQq~F~ 497 (821)
T PTZ00014 419 EGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFK-NNSLEQLFINITNEMLQKNFV 497 (821)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccC-cchHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999998877777899999999999999 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++|..+|++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus 498 ~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~ 560 (821)
T PTZ00014 498 DIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCN 560 (821)
T ss_pred HHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 2
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.4e-44 Score=312.22 Aligned_cols=141 Identities=32% Similarity=0.497 Sum_probs=136.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcC-CcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVAC-RHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~-~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
+|+|+++|.++||++|+++|+++|+|+|++||..|... .....+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus 319 ~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~-~NsfEQLcINy~NEkLQ~~f~ 397 (671)
T cd01381 319 TPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFD-VNSFEQLCINFANENLQQFFV 397 (671)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999754 4567889999999999999 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus 398 ~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~ 460 (671)
T cd01381 398 QHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLH 460 (671)
T ss_pred HHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.4e-44 Score=312.02 Aligned_cols=141 Identities=33% Similarity=0.472 Sum_probs=137.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
+|+++++|.++||++|+++|+++|+|+|+.||..|.+.......|+|+||+|||.+. .|+|||||||||||+||++|++
T Consensus 325 ~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~ 403 (674)
T cd01384 325 KPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFK-TNSFEQFCINLTNEKLQQHFNQ 403 (674)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccC-cCCHHHHHhhhhHHHHHHHHHH
Confidence 689999999999999999999999999999999998876677899999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus 404 ~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~ 465 (674)
T cd01384 404 HVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLY 465 (674)
T ss_pred HHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 4
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.9e-44 Score=311.44 Aligned_cols=142 Identities=33% Similarity=0.533 Sum_probs=136.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCC-cCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACR-HCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF 82 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~-~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~ 82 (147)
.+|+|+++|.++||++|+++|+++|+|+|+.||..|.+.. ....+|||+||+|||.+. .|+|||||||||||+||++|
T Consensus 321 ~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f 399 (677)
T cd01383 321 VQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFD-KNSFEQFCINYANERLQQHF 399 (677)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCC-CCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999998754 346789999999999999 99999999999999999999
Q ss_pred HHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 83 NQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 83 ~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus 400 ~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~ 463 (677)
T cd01383 400 NRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLK 463 (677)
T ss_pred HHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 5
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=3.5e-44 Score=309.94 Aligned_cols=141 Identities=37% Similarity=0.546 Sum_probs=135.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
.+|+++++|.++||++|+++|+++|+|+|+.||..|.+ .....+|+|+||||||.+. .|+|||||||||||+||++|+
T Consensus 319 ~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~-~~~~~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~ 396 (677)
T cd01387 319 FTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSP-TQDTLSIAILDIYGFEDLS-FNSFEQLCINYANENLQYLFN 396 (677)
T ss_pred eccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceEEEEecCccccCC-CCCHHHHHhHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999986 4456789999999999999 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++|..+|++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|+++|++|++|++
T Consensus 397 ~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~ 459 (677)
T cd01387 397 KIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCH 459 (677)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 6
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=3.7e-44 Score=309.78 Aligned_cols=142 Identities=27% Similarity=0.409 Sum_probs=136.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcC-CcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVAC-RHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~-~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
+|+|+++|.++||++|+++|+++|+|+|+.||..|... .....+|+|+||+|||.+. .|+|||||||||||+||++|+
T Consensus 323 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~ 401 (674)
T cd01378 323 VPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQ-KNSFEQFCINYVNEKLQQIFI 401 (674)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccc-cccHHHHHhHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999876 4567889999999999999 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccccCchhHHHHhhc-CcccccccchhhhhcC-CCCchHHHHhhhC
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKFS-LIPPDDILCRYFA 147 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~lLdee~~~p-~~td~~fl~kl~~ 147 (147)
+++|..++++|.+|||+|..++|.||++|+|||++ +|.|||++|||||++| ++||++|++||+.
T Consensus 402 ~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~ 467 (674)
T cd01378 402 ELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNK 467 (674)
T ss_pred HHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999 8999999999999999 9999999999863
No 7
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=3.8e-44 Score=308.58 Aligned_cols=142 Identities=34% Similarity=0.501 Sum_probs=135.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc-----CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH-----CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHL 78 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~-----~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l 78 (147)
.+|+|+++|.++||++||++|+++|+|+|+.||..|.+... ....|+|+|++|||.+. .|+|||||||||||+|
T Consensus 325 ~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkL 403 (653)
T cd01379 325 VRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFK-KNSFEQLCINIANEQI 403 (653)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCC-CCCHHHHHhhhhHHHH
Confidence 36899999999999999999999999999999999987543 35689999999999999 9999999999999999
Q ss_pred HHHHHHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 79 QYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
|++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++|++
T Consensus 404 Q~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~ 471 (653)
T cd01379 404 QYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFE 471 (653)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=4.7e-44 Score=309.91 Aligned_cols=141 Identities=30% Similarity=0.473 Sum_probs=137.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
+|+|+++|.++||++|+++|+++|+|+|+.||..|.+......+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus 332 ~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~ 410 (693)
T cd01377 332 KGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFD-FNSFEQLCINYTNEKLQQFFNH 410 (693)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccC-CCCHHHHHHHHhHHHHHHHHHH
Confidence 689999999999999999999999999999999999877788999999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|+.++++|.+|||.|+.++| .||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus 411 ~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~ 473 (693)
T cd01377 411 HMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLY 473 (693)
T ss_pred HHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999999 5999999999999999999999999999999999999986
No 9
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=5.6e-44 Score=309.28 Aligned_cols=141 Identities=36% Similarity=0.640 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc---Ccceeeeeeccchhhhhhh-HHHHHHHhhhhhhHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH---CEARYLIRSLAGKLRIGLA-EHFEQLCINYANEHLQY 80 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~---~~~~i~ildi~Gfe~~~~~-~~~eql~iN~~nE~l~~ 80 (147)
.|+++++|.+.||++|+++|++||.|+|+.||..|.+... ....|+|+|++|||.+. . |+|||||||||||+||+
T Consensus 331 ~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~-~~NsfEQLcINyaNEkLQ~ 409 (692)
T cd01385 331 LPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFG-RCNSFEQLCINYANEQLQY 409 (692)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCC-CCCCHHHHhhHHHHHHHHH
Confidence 5899999999999999999999999999999999986442 35789999999999998 6 99999999999999999
Q ss_pred HHHHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 81 YFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 81 ~~~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+|++++|..++++|..|||.|..++|.||++|+|||+++|.|||++|||||++|++||++|++|+.
T Consensus 410 ~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~ 475 (692)
T cd01385 410 YFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFN 475 (692)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 10
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=8.1e-44 Score=309.23 Aligned_cols=140 Identities=26% Similarity=0.456 Sum_probs=134.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
.|+|+++|.++||++|+++|+++|+|+|+.||..|.. ......|+|+||||||.+. .|+|||||||||||+||++|++
T Consensus 356 ~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~-~~~~~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~ 433 (717)
T cd01382 356 VPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPF-ETSSNFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFNE 433 (717)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcEEEEEeccccccCC-CCCHHHHhhhhhHHHHHHHHHH
Confidence 5799999999999999999999999999999999975 4456789999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|..++++|.+|||+|.+++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus 434 ~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~kl~ 495 (717)
T cd01382 434 RILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVH 495 (717)
T ss_pred HHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 11
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.9e-44 Score=317.28 Aligned_cols=141 Identities=31% Similarity=0.536 Sum_probs=135.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
.|++..||...||++|+.+|+++|+|+|+.||..|........+|||+||+|||.|. .|+||||||||+||+|||+|++
T Consensus 386 ~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFE-kNSFEQlCINYtNEKLQQ~Fn~ 464 (1463)
T COG5022 386 VPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFE-KNSFEQLCINYTNEKLQQFFNQ 464 (1463)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhc-cCcHHHHHHhhhhHHHHHHHHH
Confidence 689999999999999999999999999999999998755667899999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccccCchhHHHHhhc-CcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
|+|..+|++|.+|||+|.+++|.||++|+|||++ .|.|||++|||||..|.+||++|..||.
T Consensus 465 h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~ 527 (1463)
T COG5022 465 HMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLA 527 (1463)
T ss_pred HHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHH
Confidence 9999999999999999999999999999999996 3789999999999999999999999986
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.4e-43 Score=306.99 Aligned_cols=140 Identities=33% Similarity=0.513 Sum_probs=134.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcC---CcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVAC---RHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYY 81 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~---~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~ 81 (147)
.|+|+++|.++||++|+++|+++|.|+|+.||..|.+. ......|+|+||||||.+. .|+|||||||||||+||++
T Consensus 323 ~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~ 401 (691)
T cd01380 323 KPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFE-KNSFEQFCINYANEKLQQQ 401 (691)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccC-CCCHHHHhhhhhhHHHHHH
Confidence 68999999999999999999999999999999999876 3556789999999999999 9999999999999999999
Q ss_pred HHHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 82 FNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 82 ~~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
|++++|..++++|.+|||+|+.++|.||++|+|||++ |.|||++|||||++|++||++|++||+
T Consensus 402 f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~ 465 (691)
T cd01380 402 FNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLY 465 (691)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999996 699999999999999999999999986
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=4.2e-43 Score=303.76 Aligned_cols=141 Identities=35% Similarity=0.575 Sum_probs=137.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
+|+++++|.+.||++|+++|+++|.|+|+.||..|.+......+|+|+|+||||.+. .|+|||||||||||+||++|++
T Consensus 327 ~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~-~NsfEQLcINyaNEkLq~~f~~ 405 (677)
T smart00242 327 KPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFE-VNSFEQLCINYANEKLQQFFNQ 405 (677)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccc-cCCHHHHHhHhhHHHHHHHHHH
Confidence 689999999999999999999999999999999999877788999999999999999 8999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|..++++|.+|||.|+.++|.||++|+|||+++|.||+++|||||++|++||++|++||+
T Consensus 406 ~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~ 467 (677)
T smart00242 406 HVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLN 467 (677)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=3.2e-42 Score=298.56 Aligned_cols=142 Identities=37% Similarity=0.542 Sum_probs=137.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
..|+++++|.+.||++|+++|+++|+|+|+.||..|.+.......|+|+|++|||.+. .|+|||||||||||+||++|+
T Consensus 319 ~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~-~NsfEQLcINy~NEkLq~~f~ 397 (679)
T cd00124 319 TIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFE-KNSFEQLCINYANEKLQQFFN 397 (679)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCC-CCCHHHHhcccchHHHHHHHH
Confidence 3689999999999999999999999999999999998876778899999999999999 899999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++|..++++|..|||.|..++|.||++|+|||+++|.||+++|||||++|+++|++|++||+
T Consensus 398 ~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~ 460 (679)
T cd00124 398 QHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLN 460 (679)
T ss_pred HHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.2e-41 Score=295.23 Aligned_cols=142 Identities=25% Similarity=0.329 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhh-----hHHHHHHHhhhhhhHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGL-----AEHFEQLCINYANEHLQ 79 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~-----~~~~eql~iN~~nE~l~ 79 (147)
.++++.+|.++||++||++|+++|+|+|++||..|........+|+|+||+|||.+.. .|+|||||||||||+||
T Consensus 331 ~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQ 410 (767)
T cd01386 331 SSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQ 410 (767)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHH
Confidence 3578899999999999999999999999999999988766678999999999999973 38999999999999999
Q ss_pred HHHHHhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCc--------------ccccccchhhhhcCCCCchHHHHh
Q psy5254 80 YYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDDQAKFSLIPPDDILCR 144 (147)
Q Consensus 80 ~~~~~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p--------------~Gll~lLdee~~~p~~td~~fl~k 144 (147)
++|++++|..+|++|..|||+|+...+ .||.+|++||+++| .|||++|||||++|++||++|++|
T Consensus 411 q~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~k 490 (767)
T cd01386 411 LLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLER 490 (767)
T ss_pred HHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHH
Confidence 999999999999999999999986555 79999999999765 599999999999999999999999
Q ss_pred hh
Q psy5254 145 YF 146 (147)
Q Consensus 145 l~ 146 (147)
|+
T Consensus 491 l~ 492 (767)
T cd01386 491 LF 492 (767)
T ss_pred HH
Confidence 86
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1.6e-41 Score=294.89 Aligned_cols=141 Identities=36% Similarity=0.613 Sum_probs=126.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCC-cCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACR-HCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~-~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
.|+++++|.++||+||+++|++||.|+|+.||..|++.. ....+|+|+|+||||.+. .|+|||||||||||+||++|+
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~-~N~fEQLciNyanErLq~~f~ 399 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFS-VNSFEQLCINYANERLQQFFN 399 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---S-SB-HHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcccccccc-ccccccceeeeccccccceee
Confidence 579999999999999999999999999999999998866 567889999999999998 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++|..++++|.+|||.|+.++| .||.+|+|||+++|.|||++|||||++|+++|++|+++++
T Consensus 400 ~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~ 463 (689)
T PF00063_consen 400 QHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLL 463 (689)
T ss_dssp HHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHH
T ss_pred eecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999985
No 17
>KOG0164|consensus
Probab=100.00 E-value=1.6e-39 Score=274.39 Aligned_cols=142 Identities=26% Similarity=0.373 Sum_probs=133.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCC---c--CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACR---H--CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHL 78 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~---~--~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l 78 (147)
.+++++++|..+||++|+++|+++|.|+|..||..+.... . ....|+++||+|||.++ .|+|||||||||||+|
T Consensus 327 ~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~-~NSFEQfcINYCNEKL 405 (1001)
T KOG0164|consen 327 LKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQ-DNSFEQFCINYCNEKL 405 (1001)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeec-CCcHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999996531 2 23679999999999999 9999999999999999
Q ss_pred HHHHHHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCC-CCchHHHHhhh
Q psy5254 79 QYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSL-IPPDDILCRYF 146 (147)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~-~td~~fl~kl~ 146 (147)
|+.|++-+++++|+||..|||+|.+++|.+|.-++||++.+-.||++||||+|+.|+ .||.+||++|-
T Consensus 406 QQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~ 474 (1001)
T KOG0164|consen 406 QQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLN 474 (1001)
T ss_pred HHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 69999999873
No 18
>KOG0161|consensus
Probab=100.00 E-value=5e-38 Score=288.96 Aligned_cols=141 Identities=30% Similarity=0.485 Sum_probs=135.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
..-++++|..+..++|+++|+++|.|+|..||..|....+..++|||+||+||++|. .|+|+||||||+||+||++|++
T Consensus 406 k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe-~nSFEQLciNytnEkLQqfFnh 484 (1930)
T KOG0161|consen 406 KAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFE-FNSFEQLCINYTNEKLQQFFNH 484 (1930)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccC-cCCHHHHHHHHHHHHHHhhhcc
Confidence 446789999999999999999999999999999998877888999999999999999 8999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhhC
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYFA 147 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~~ 147 (147)
|+|..++++|..|||.|.+++| .|-+||++||+ +|+||+|+|||||++|++||.||++||++
T Consensus 485 ~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-kp~Gi~slLdEEc~~PkAtd~tf~~kL~~ 547 (1930)
T KOG0161|consen 485 HMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-KPMGILSLLDEECVVPKATDKTFLEKLCD 547 (1930)
T ss_pred hhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-chhhHHHHHHHHHhcCCCccchHHHHHHH
Confidence 9999999999999999999999 89999999999 57899999999999999999999999974
No 19
>KOG0162|consensus
Probab=100.00 E-value=1.1e-36 Score=257.74 Aligned_cols=141 Identities=28% Similarity=0.417 Sum_probs=131.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc-CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH-CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~-~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
.||+++||..+||++|+++|.+||+|+|+.||+.|....+ .+.+|||+||+|||.|. .|+||||||||.||+||+.|+
T Consensus 340 v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe-~N~FEQ~CINfVNEKLQQIFI 418 (1106)
T KOG0162|consen 340 VPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFE-NNGFEQFCINFVNEKLQQIFI 418 (1106)
T ss_pred ecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecc-cCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999986554 57789999999999999 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccccCchhHHHHhhc-CcccccccchhhhhcCC----CCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKFSL----IPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~lLdee~~~p~----~td~~fl~kl~ 146 (147)
+.+++.+|++|.+|||.|.++.|.||.-++|||+. .|.||+++|||.|.... +-|++|+++|-
T Consensus 419 eLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn 486 (1106)
T KOG0162|consen 419 ELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLN 486 (1106)
T ss_pred HHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999987 48899999999999653 56889998874
No 20
>KOG0163|consensus
Probab=100.00 E-value=2.7e-36 Score=256.08 Aligned_cols=141 Identities=30% Similarity=0.472 Sum_probs=133.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
..||-+.+|...||++|+++|+.||+|+|..||..+- -..+..+|||+|+.|||.+. .|+|||||||||||+||++|+
T Consensus 409 rVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiP-Fe~St~fiGVLDiAGFEyf~-~NSFEQFCINyCNEKLQ~FFN 486 (1259)
T KOG0163|consen 409 RVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIP-FEKSTFFIGVLDIAGFEYFA-VNSFEQFCINYCNEKLQKFFN 486 (1259)
T ss_pred EeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccc-cccccceeEEEeeccceeee-cccHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999998773 24456789999999999998 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++++.+|+.|..||+.++.+.|.||++|++||+.+..|||.+||||.++|+++++.|-.+.|
T Consensus 487 erILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vH 549 (1259)
T KOG0163|consen 487 ERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVH 549 (1259)
T ss_pred HHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987765
No 21
>KOG0160|consensus
Probab=100.00 E-value=2.4e-34 Score=250.16 Aligned_cols=141 Identities=35% Similarity=0.540 Sum_probs=135.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc-CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH-CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF 82 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~-~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~ 82 (147)
.+|++..++...||++|+.+|+.||+|+|+.||..|....+ ...+|+|+|++|||.+. .|+|+||||||+||+||+.|
T Consensus 324 ~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~-~nsfeQfcINyanEkLqq~f 402 (862)
T KOG0160|consen 324 VKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFE-VNSFEQFCINYANEKLQQQF 402 (862)
T ss_pred ecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccc-cCcHHHhhhhhHHHHhhHHH
Confidence 37899999999999999999999999999999999987554 47899999999999999 99999999999999999999
Q ss_pred HHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 83 NQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 83 ~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
.+|+|+.++++|..|+|.|..++|.||++|+++|+. |.|++++|||+|++|.++|++|..||+
T Consensus 403 nqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~ 465 (862)
T KOG0160|consen 403 NQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLY 465 (862)
T ss_pred HHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHH
Confidence 999999999999999999999999999999999996 899999999999999999999999986
No 22
>KOG4229|consensus
Probab=99.97 E-value=2.8e-31 Score=235.50 Aligned_cols=141 Identities=36% Similarity=0.557 Sum_probs=134.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc--CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH--CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF 82 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~--~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~ 82 (147)
.|+++++|.+.+|++|+.+|.++|.|++..||..+.+... ....||++|+||||++. .|+|+|+|+|||||++|.+|
T Consensus 383 ~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~-~nsfEq~~in~Ane~lQ~~f 461 (1062)
T KOG4229|consen 383 APLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFE-RNSFEQLCINLANEQLQYYF 461 (1062)
T ss_pred hhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchh-hhHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999987544 25789999999999996 99999999999999999999
Q ss_pred HHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 83 NQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 83 ~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
.+|+|..++++|..|+|.|..+.|.||..|+++|..+|+||+.+||||+.+|+++|+|++.|+.
T Consensus 462 nqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~ 525 (1062)
T KOG4229|consen 462 NQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLN 525 (1062)
T ss_pred HHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999874
No 23
>KOG0967|consensus
Probab=98.63 E-value=2.6e-08 Score=85.15 Aligned_cols=64 Identities=61% Similarity=0.953 Sum_probs=61.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 1 MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 1 ~~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
||+|+||||..|++++..||+..|.++...+++.|-++|.+|++.|+++++|-+.|..|+|.+.
T Consensus 205 m~~P~pLtV~~VF~~Lr~IAk~sG~~S~~kK~~lik~Llvac~~~E~kyLiRsL~gkLRiGlae 268 (714)
T KOG0967|consen 205 MFKPKPLTVRDVFSTLRKIAKESGKGSQNKKKDLIKALLVACRGIEAKYLIRSLEGKLRIGLAE 268 (714)
T ss_pred ccCCCCccHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHhcccccHHHHHHHHHhhhhhhhhH
Confidence 7899999999999999999999999999999999999999999999999999999999999633
No 24
>PLN03113 DNA ligase 1; Provisional
Probab=97.67 E-value=2e-05 Score=69.80 Aligned_cols=64 Identities=48% Similarity=0.774 Sum_probs=60.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 1 MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 1 ~~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
||+|.|||+.+|++.+..||+..|.++...+++.|.++|..+++.|.+++|+-+.|-.|+|...
T Consensus 235 ~~~~~~LTi~~V~~~L~~IA~~~G~~sq~~K~~~i~~Ll~~~~~~E~k~liR~l~g~LRIGv~e 298 (744)
T PLN03113 235 MRKPEPLTVVKVFNTFQQIAKESGKDSQEKKKNRIKALLVAATDCEPLYLIRLLQTKLRIGLAG 298 (744)
T ss_pred ccCCCCCCHHHHHHHHHHHHhhhCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccccccccH
Confidence 4678999999999999999999999999999999999999999999999999999999999644
No 25
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=97.35 E-value=6.8e-05 Score=55.10 Aligned_cols=61 Identities=36% Similarity=0.695 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
+.+||+.+|++.++.||...|+++...+.+.+..++..+++.|..++++.+.|-.++|...
T Consensus 108 ~~~lTi~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~s~~E~k~i~Riil~~lriG~~~ 168 (177)
T PF04675_consen 108 PSPLTISEVNETLDELAAASGKGSQDEKIDILKELLRRCSPEEAKWIVRIILKDLRIGVSE 168 (177)
T ss_dssp SS--BHHHHHHHHHHHHH--STTHHHHHHHHHHHHHTTS-HHHHHHHHHHHTT--SSS--H
T ss_pred CCCCCHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeCccH
Confidence 6899999999999999999999999999999999999999999999999999999999543
No 26
>PRK01109 ATP-dependent DNA ligase; Provisional
Probab=96.28 E-value=0.002 Score=56.10 Aligned_cols=64 Identities=38% Similarity=0.602 Sum_probs=58.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHH
Q psy5254 2 FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH 65 (147)
Q Consensus 2 ~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~ 65 (147)
+.+.|||+.++++.++.||+..++++...+.+.|..+|..+++.+..++++-+.|-.++|.+..
T Consensus 110 ~~~~~lti~eV~~~L~~Ia~~sg~~s~~~k~~iL~~Ll~~~~~~E~k~iirli~g~lriGv~e~ 173 (590)
T PRK01109 110 FSKEPLTVKEVYDTLVKIALATGEGSQDLKIKLLAGLLKDASPLEAKYIARFVEGRLRLGVGDA 173 (590)
T ss_pred CCCCCcCHHHHHHHHHHHHhhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCccHH
Confidence 3578899999999999999999999999999999999999999999999999999999986443
No 27
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1). All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.26 E-value=0.0044 Score=53.05 Aligned_cols=62 Identities=47% Similarity=0.742 Sum_probs=57.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 3 QPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 3 ~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
.+.+||+.+|++.++.||+..+.++...+.+.|.+++..+++.+.+++++-+.|-.++|...
T Consensus 51 ~~~~lti~eV~~~L~~ia~~~g~~s~~~k~~~l~~ll~~~~~~e~k~l~r~i~~~lriG~~~ 112 (514)
T TIGR00574 51 FSAPLTVKEVYETLKNIAETSGEGSQDKKIKLLKSLLKRASPLEAKYLIRTILGDLRIGIAE 112 (514)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcccCccH
Confidence 46889999999999999999999999999999999999999999999999999999988643
No 28
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed
Probab=95.99 E-value=0.0023 Score=54.79 Aligned_cols=62 Identities=37% Similarity=0.517 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH 65 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~ 65 (147)
+.+||+.+|++.++.||+..+.++...+++.|..++..+++.|.+++++.+.|-.|+|...+
T Consensus 70 ~~~ltl~~V~~~l~~ia~~~g~~s~~~k~~~l~~ll~~~~~~E~~~l~r~i~~~lRiGv~~~ 131 (508)
T PRK03180 70 EPTLTVADVDAALSEIAAVAGAGSQARRAALLAALFAAATEDEQRFLRRLLTGELRQGALDG 131 (508)
T ss_pred CCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcccccHH
Confidence 46799999999999999999999999999999999999999999999999999999996443
No 29
>PRK09247 ATP-dependent DNA ligase; Validated
Probab=92.88 E-value=0.068 Score=46.20 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
+.++|+.+++.++..+++.. +.+.|.+++.++++.+.+++++-+.|-.|+|...
T Consensus 101 ~~~~tv~~v~~~l~~~~~~~-------k~~~l~~ll~~~~~~e~~~i~rli~g~lRiG~~~ 154 (539)
T PRK09247 101 PLAPWLEEVLLPLRGLGREE-------LRAALADLWDRLDEDGRFALNKLITGGFRVGVSA 154 (539)
T ss_pred CccccHHHHHHHHHhhhHHH-------HHHHHHHHHHhCCHHHHHHHHHHhhCccccchhH
Confidence 46799999999999998753 7788999999999999999999999999999644
No 30
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=59.54 E-value=13 Score=25.25 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHhhhhhhcCCcCcceeeeee-ccchhhhhhhHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHhhhhCccc
Q psy5254 23 TGQASVSRKIDKIQSLFVACRHCEARYLIRS-LAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 101 (147)
Q Consensus 23 ly~~lf~~iv~~in~~L~~~~~~~~~i~ild-i~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~~~~~~~~~~~~~Egi~~ 101 (147)
+=..=|..+++.||..+..+...-....+.+ +.|.... +.-.+|.....++...-....+-...++.|..-|+.|
T Consensus 30 is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~----~l~~~~~~~~~~~~~~~le~~l~~~N~~~~~~~gi~i 105 (118)
T PF10256_consen 30 ISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTL----GLSSLCFKTHYKRKLRELEKYLEQLNEELFKPRGIKI 105 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 3345578889999999987633211112221 2333322 2344455544555544444444444445777778766
No 31
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=30.35 E-value=47 Score=27.71 Aligned_cols=35 Identities=6% Similarity=-0.025 Sum_probs=23.3
Q ss_pred HHhHHHHHHH-HHHhhhhhhcC---CcCcceeeeeeccc
Q psy5254 22 MTGQASVSRK-IDKIQSLFVAC---RHCEARYLIRSLAG 56 (147)
Q Consensus 22 ~ly~~lf~~i-v~~in~~L~~~---~~~~~~i~ildi~G 56 (147)
..-+++|.|+ ++.+.+.|... .+...+++++|+-|
T Consensus 135 G~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGG 173 (434)
T PF01150_consen 135 GEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGG 173 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-S
T ss_pred HHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCC
Confidence 3558999999 66777666543 12457799999876
No 32
>PF04540 Herpes_UL51: Herpesvirus UL51 protein; InterPro: IPR007625 UL51 protein is a virion protein. In Suid herpesvirus 1 (Pseudorabies virus), UL51 (Q85227 from SWISSPROT) was identified as a component of the capsid []. In Human herpesvirus 1 (HHV-1) there is evidence for post-translational modification of UL51 [].
Probab=30.15 E-value=1.5e+02 Score=21.67 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=24.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy5254 2 FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKI 35 (147)
Q Consensus 2 ~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~i 35 (147)
|=|.|||++.|...+|.+-|-.=.+.-.+.....
T Consensus 38 lLP~pltleDvi~SaD~~rrLvra~~LARty~ac 71 (164)
T PF04540_consen 38 LLPAPLTLEDVIESADETRRLVRAQALARTYAAC 71 (164)
T ss_pred hcCCcCcHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999876665555555544444
No 33
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=26.50 E-value=1.8e+02 Score=23.81 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254 26 ASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF 82 (147)
Q Consensus 26 ~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~ 82 (147)
..|+|+++.|.+.-- .-..+..|.|+..-.|.. ..++-.-|+.|+.+.+.+..
T Consensus 56 ~iF~WLm~yv~~~~p-~l~~~NvvsIliSS~FL~---M~~Lve~cl~y~~~~~~~Iv 108 (317)
T PF11822_consen 56 HIFEWLMRYVKGEPP-SLTPSNVVSILISSEFLQ---MESLVEECLQYCHDHMSEIV 108 (317)
T ss_pred hHHHHHHHHhhcCCC-cCCcCcEEEeEehhhhhc---cHHHHHHHHHHHHHhHHHHH
Confidence 469999999998221 124466788888888876 55777788888877777654
No 34
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=24.28 E-value=1.1e+02 Score=16.01 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5254 10 ATVFDKLKDIAGMTGQASVSRKIDK 34 (147)
Q Consensus 10 ~~v~~~~~~ia~~ly~~lf~~iv~~ 34 (147)
++.++.++.+|+..| .+.++++..
T Consensus 8 ~~~~~~l~~~a~~~g-~s~s~~ir~ 31 (39)
T PF01402_consen 8 DELYERLDELAKELG-RSRSELIRE 31 (39)
T ss_dssp HHHHHHHHHHHHHHT-SSHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 467788999999998 566655543
No 35
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=23.97 E-value=1.6e+02 Score=17.05 Aligned_cols=34 Identities=3% Similarity=0.027 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSL 38 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~ 38 (147)
..+|.++....+..|-..+...+...+.++-+..
T Consensus 13 ~~MS~eEI~~er~eL~~~LdP~li~~L~~R~~~~ 46 (49)
T PF08621_consen 13 ASMSPEEIEEEREELLESLDPKLIEFLKKRANKK 46 (49)
T ss_pred HhCCHHHHHHHHHHHHHhCCHHHHHHHHHhhhcc
Confidence 3589999999999999999999999888776643
No 36
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=23.75 E-value=99 Score=18.69 Aligned_cols=21 Identities=33% Similarity=0.232 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q psy5254 4 PAPLTVATVFDKLKDIAGMTG 24 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly 24 (147)
..||+.+|+..+.+++++-.+
T Consensus 50 ~~PL~~~Ev~~i~kSi~k~~~ 70 (71)
T PF08708_consen 50 SPPLPESEVKAIAKSIAKWTW 70 (71)
T ss_pred CCCCCHHHHHHHHHHHHHhcc
Confidence 579999999999999887654
No 37
>KOG2798|consensus
Probab=21.61 E-value=1.6e+02 Score=24.42 Aligned_cols=43 Identities=23% Similarity=0.191 Sum_probs=34.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhH-------HHHHHHHHHhhhhhhcCCc
Q psy5254 2 FQPAPLTVATVFDKLKDIAGMTGQ-------ASVSRKIDKIQSLFVACRH 44 (147)
Q Consensus 2 ~~~~~Ltv~~v~~~~~~ia~~ly~-------~lf~~iv~~in~~L~~~~~ 44 (147)
+.+.|+.+..+..++..|++.-.+ -+++-+++.||.+.-++..
T Consensus 98 ~~~n~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~ 147 (369)
T KOG2798|consen 98 AQVNPDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGK 147 (369)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccc
Confidence 346778888999999999998665 6888999999998866443
Done!