Query psy5254
Match_columns 147
No_of_seqs 139 out of 1346
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 21:43:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 1.4E-46 4.7E-51 324.5 13.1 142 4-146 337-478 (697)
2 2v26_A Myosin VI; calmodulin-b 100.0 6.1E-46 2.1E-50 323.9 12.1 140 5-146 405-544 (784)
3 1w7j_A Myosin VA; motor protei 100.0 1E-45 3.5E-50 322.7 13.0 140 5-146 389-528 (795)
4 4db1_A Myosin-7; S1DC, cardiac 100.0 1.3E-45 4.6E-50 321.1 13.3 141 4-146 412-553 (783)
5 1w9i_A Myosin II heavy chain; 100.0 2.7E-45 9.4E-50 318.5 13.3 140 5-146 407-548 (770)
6 1kk8_A Myosin heavy chain, str 100.0 4.6E-45 1.6E-49 319.9 12.4 140 5-146 412-552 (837)
7 4anj_A Unconventional myosin-V 100.0 5.6E-45 1.9E-49 324.7 12.1 141 4-146 408-548 (1052)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 1.6E-44 5.5E-49 323.6 12.7 140 5-146 389-528 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 3.8E-44 1.3E-48 319.2 13.3 141 5-146 384-528 (995)
10 1g8x_A Myosin II heavy chain f 100.0 1.7E-43 5.8E-48 315.1 12.8 140 5-146 407-548 (1010)
11 1i84_S Smooth muscle myosin he 100.0 2.3E-43 7.9E-48 319.1 12.6 142 4-146 414-559 (1184)
12 4htp_A DNA ligase 4; helical d 97.4 3.2E-05 1.1E-09 58.9 0.7 62 4-65 140-201 (240)
13 1x9n_A DNA ligase I; 5'-adenyl 96.9 0.00024 8.4E-09 61.5 1.0 63 2-64 163-225 (688)
14 3gde_A DNA ligase; DNA-binding 96.4 0.00058 2E-08 57.8 0.2 61 4-64 112-172 (558)
15 2hiv_A Thermostable DNA ligase 96.0 0.00094 3.2E-08 57.2 -0.3 62 3-64 135-196 (621)
16 3l2p_A DNA ligase 3; DNA ligas 95.7 0.002 7E-08 54.7 0.5 58 4-64 115-172 (579)
17 2cfm_A Thermostable DNA ligase 95.7 0.0017 5.7E-08 55.0 -0.1 60 5-64 109-168 (561)
18 3ka5_A Ribosome-associated pro 52.6 11 0.00037 22.5 2.6 18 2-19 8-25 (65)
19 3k2t_A LMO2511 protein; lister 50.0 11 0.00037 21.9 2.2 18 2-19 8-25 (57)
20 3lyv_A Ribosome-associated fac 39.5 15 0.0005 22.0 1.7 18 2-19 9-26 (66)
21 3mhs_C SAGA-associated factor 36.0 21 0.00072 23.1 2.1 22 14-35 6-27 (99)
22 1z7l_A Ubiquitin-activating en 21.9 30 0.001 26.3 1.1 69 18-87 31-108 (276)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.4e-46 Score=324.49 Aligned_cols=142 Identities=27% Similarity=0.377 Sum_probs=137.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
.+|+|+++|.++||++||++|++||+|+|++||..|.+..+...+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus 337 ~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~-~NsFEQlcINy~NEkLQq~F~ 415 (697)
T 1lkx_A 337 SVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQ-NNSFEQLNINFCNEKLQQLFI 415 (697)
T ss_dssp CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEeeccccccccC-cCCHHHHHHHhhhhHHHHHHH
Confidence 4789999999999999999999999999999999998766668899999999999999 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++|..+|++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus 416 ~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~ 478 (697)
T 1lkx_A 416 ELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSIC 478 (697)
T ss_dssp HHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=6.1e-46 Score=323.86 Aligned_cols=140 Identities=26% Similarity=0.445 Sum_probs=135.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
.|+|+++|.++||+|||++|++||+|+|++||..|.. .....+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus 405 ~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~-~~~~~~IGvLDI~GFE~f~-~NsFEQlcINyaNEkLQq~F~~ 482 (784)
T 2v26_A 405 VPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF-ETSSYFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFNE 482 (784)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-SCCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccccceeeecccCCcccCC-cCCHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999965 4567899999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|..+|++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus 483 ~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~ 544 (784)
T 2v26_A 483 RILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVH 544 (784)
T ss_dssp HHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred hhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1e-45 Score=322.66 Aligned_cols=140 Identities=31% Similarity=0.488 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
+|+|+++|.++||+|||++|++||+|+|++||..|....+...+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus 389 ~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~-~NsFEQlcINyaNEkLQq~Fn~ 467 (795)
T 1w7j_A 389 KPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE-INSFEQFCINYANEKLQQQFNM 467 (795)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccceEEeeccCcccccC-cCCHHHHHHHhhhHHHHHHHHH
Confidence 689999999999999999999999999999999998766678899999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|..+|++|.+|||+|..++|.||++|+|||+++ .|||++|||||++|++||++|++||+
T Consensus 468 ~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl~ 528 (795)
T 1w7j_A 468 HVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLY 528 (795)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999976 99999999999999999999999986
No 4
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.3e-45 Score=321.13 Aligned_cols=141 Identities=30% Similarity=0.510 Sum_probs=134.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
.+|+|+++|.++||+|||++|++||+|+|++||+.|.+..+...+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus 412 ~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~-~NsFEQlCINyaNEkLQq~Fn 490 (783)
T 4db1_A 412 TKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFD-FNSFEQLCINFTNEKLQQFFN 490 (783)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEeccccccccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998766677899999999999999 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++|..+|++|.+|||+|..++| .||++|+|||++ |.|||++|||||++|++||++|++||+
T Consensus 491 ~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~kl~ 553 (783)
T 4db1_A 491 HHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAKLF 553 (783)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHHHH
T ss_pred HHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999 599999999995 899999999999999999999999986
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=2.7e-45 Score=318.54 Aligned_cols=140 Identities=31% Similarity=0.517 Sum_probs=134.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
+|+|+++|..+||++||++|++||+|+|++||..|....+ ..+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus 407 ~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~-~~~IGvLDI~GFE~F~-~NsFEQlCINyaNEkLQq~Fn~ 484 (770)
T 1w9i_A 407 QHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK-AYFIGVLDIYGFEIFK-VNSFEQLCINYTNEKLQQFFNH 484 (770)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC-SEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCeeeeccCccccccc-cCCHHHHHHHhhHHHHHHHHHh
Confidence 6899999999999999999999999999999999986555 8899999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcC-cccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~-p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|..+|++|.+|||.|..++| .||++|+|||+++ |.|||++|||||++|++||++|++||+
T Consensus 485 ~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~ 548 (770)
T 1w9i_A 485 HMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLH 548 (770)
T ss_dssp HHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred hhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHH
Confidence 9999999999999999999999 5999999999974 999999999999999999999999975
No 6
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=4.6e-45 Score=319.91 Aligned_cols=140 Identities=29% Similarity=0.524 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
+|+|+++|.++||++||++|++||+|+|++||..|....+...+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus 412 ~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~-~NsFEQlcINyaNEkLQq~Fn~ 490 (837)
T 1kk8_A 412 KGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFD-FNSFEQLCINYTNERLQQFFNH 490 (837)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceEEEEecCCccccc-cccHHHHHHHHhhHHHHHHHHH
Confidence 689999999999999999999999999999999998655677899999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|..+|++|.+|||+|..++| .||++|+|||++ |.|||++|||||++|++||++|++||+
T Consensus 491 ~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~kl~ 552 (837)
T 1kk8_A 491 HMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDKLY 552 (837)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred hhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHHHH
Confidence 9999999999999999999999 599999999996 899999999999999999999999975
No 7
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=5.6e-45 Score=324.67 Aligned_cols=141 Identities=26% Similarity=0.441 Sum_probs=135.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
..|+++++|..+||+||+++|++||+|+|+.||..|.. .....+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus 408 ~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~-~~~~~~IGILDI~GFE~f~-~NsFEQLCINyaNEkLQq~Fn 485 (1052)
T 4anj_A 408 KVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF-ETSSYFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFN 485 (1052)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-SCCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccccceEEEEecCCCcccc-cCcHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999976 4567899999999999999 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++|..+|++|..|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus 486 ~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~ 548 (1052)
T 4anj_A 486 ERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVH 548 (1052)
T ss_dssp HHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=1.6e-44 Score=323.63 Aligned_cols=140 Identities=31% Similarity=0.488 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
.|+|+++|.++||+||+++|++||+|+|+.||..|.+..+...+|||+||||||.|. .|+|||||||||||+||++|++
T Consensus 389 ~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~-~NsFEQlcINy~NEkLQq~F~~ 467 (1080)
T 2dfs_A 389 KPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE-INSFEQFCINYANEKLQQQFNM 467 (1080)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS-SBCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC-cCCHHHHHHHhhhHHHHHHHHH
Confidence 689999999999999999999999999999999998766678899999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|..+|++|..|||+|..++|.||++|+|||+++ .|||++|||||++|++||++|++||+
T Consensus 468 ~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~ 528 (1080)
T 2dfs_A 468 HVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLY 528 (1080)
T ss_dssp HHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999976 99999999999999999999999986
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=3.8e-44 Score=319.21 Aligned_cols=141 Identities=30% Similarity=0.456 Sum_probs=135.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc-CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH-CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN 83 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~-~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~ 83 (147)
+|+|+++|.++||++|+++|++||+|+|++||..|....+ ...+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus 384 ~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~-~NsfEQlcINy~NEkLQq~F~ 462 (995)
T 2ycu_A 384 KAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQ-LNSFEQLCINYTNEKLQQLFN 462 (995)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCCCS-SBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccccc-cchHHHHHHHhhHHHHHHHHH
Confidence 6899999999999999999999999999999999986554 67899999999999999 999999999999999999999
Q ss_pred HhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhc--CcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 84 QHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~--~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
+++|..+|++|..|||+|..++| .||++|+|||++ +|.|||++|||||++|++||++|++||+
T Consensus 463 ~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~~kl~ 528 (995)
T 2ycu_A 463 HTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVA 528 (995)
T ss_dssp HHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHHHHHH
T ss_pred HhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHHHHHH
Confidence 99999999999999999999999 699999999997 3899999999999999999999999986
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=1.7e-43 Score=315.14 Aligned_cols=140 Identities=31% Similarity=0.515 Sum_probs=134.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ 84 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~ 84 (147)
+|+|+++|.++||++|+++|++||+|+|++||..|.... ...+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus 407 ~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~-~~~~IgvLDI~GFE~f~-~NsfEQlcINy~NEkLQq~F~~ 484 (1010)
T 1g8x_A 407 QHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER-KAYFIGVLDISGFEIFK-VNSFEQLCINYTNEKLQQFFNH 484 (1010)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CSEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cCceeeeccCcccccCC-cCcHHHHHHHhhhHHHHHHHHH
Confidence 689999999999999999999999999999999998644 67899999999999999 9999999999999999999999
Q ss_pred hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhc-CcccccccchhhhhcCCCCchHHHHhhh
Q psy5254 85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~-~p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++|..+|++|..|||.|..++| .||++|+|||++ +|.|||++|||||++|++||++|++||+
T Consensus 485 ~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~ 548 (1010)
T 1g8x_A 485 HMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLH 548 (1010)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred HhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHH
Confidence 9999999999999999999999 599999999997 4999999999999999999999999975
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=2.3e-43 Score=319.14 Aligned_cols=142 Identities=30% Similarity=0.475 Sum_probs=131.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcC-CcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVAC-RHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF 82 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~-~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~ 82 (147)
..|+|+++|..+||+||+++|++||+|+|+.||..|.+. .+...+|||+||||||.|. .|+|||||||||||+||++|
T Consensus 414 ~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~-~NsfeQlciNy~nEkLq~~f 492 (1184)
T 1i84_S 414 QKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE-INSFEQLCINYTNEKLQQLF 492 (1184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC-cchHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999864 3567899999999999999 99999999999999999999
Q ss_pred HHhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcC--cccccccchhhhhcCCCCchHHHHhhh
Q psy5254 83 NQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQAKFSLIPPDDILCRYF 146 (147)
Q Consensus 83 ~~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~--p~Gll~lLdee~~~p~~td~~fl~kl~ 146 (147)
++++|..+|++|..|||.|.+++| .||++|+|||+++ |+|||++|||||++|++||.+|++||+
T Consensus 493 ~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~~kl~ 559 (1184)
T 1i84_S 493 NHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLI 559 (1184)
T ss_dssp HHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHHHHHH
T ss_pred HHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHHHHHH
Confidence 999999999999999999999999 6999999999963 349999999999999999999999986
No 12
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=97.39 E-value=3.2e-05 Score=58.89 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH 65 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~ 65 (147)
+.+||+++|++.++.||...++++...+.+.+..++.++++.|.+++++.+.|..|+|...+
T Consensus 140 ~~~LTv~~V~~~L~~IA~~~g~~s~~~k~~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~ 201 (240)
T 4htp_A 140 KGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQ 201 (240)
T ss_dssp SCCCBHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHH
T ss_pred CCCcCHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHCCHHHHHHHHHHHhcccccCccHh
Confidence 46899999999999999999999999999999999999999999999999999999996443
No 13
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=96.85 E-value=0.00024 Score=61.49 Aligned_cols=63 Identities=60% Similarity=1.032 Sum_probs=59.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 2 FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 2 ~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
|+|.+||+++|++.++.||+..+.++...+++.|..++.++++.+.+++++-+.|-.|+|...
T Consensus 163 ~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~ 225 (688)
T 1x9n_A 163 LPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAE 225 (688)
T ss_dssp CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCSTHHHHHHHHHTTCCCCSCCH
T ss_pred CCCCCCcHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHhcccccCccH
Confidence 567899999999999999999999999999999999999999999999999999999998633
No 14
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.00058 Score=57.82 Aligned_cols=61 Identities=36% Similarity=0.552 Sum_probs=57.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
+.+||+.+|++.++.||+..++++...+.+.|..++.++++.|.+++++.+.|-.|+|...
T Consensus 112 ~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~~~~E~~~l~rli~~~lRiG~~~ 172 (558)
T 3gde_A 112 FEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEARYLTRLILNEMRLGVGE 172 (558)
T ss_dssp CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCCSSCCH
T ss_pred CCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhccccccccH
Confidence 5789999999999999999999999999999999999999999999999999999999644
No 15
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=96.05 E-value=0.00094 Score=57.20 Aligned_cols=62 Identities=32% Similarity=0.544 Sum_probs=57.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 3 QPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 3 ~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
++.+||+++|++.++.||+..++++...+++.|..++.++++.+.+++++.+.|-.|+|...
T Consensus 135 ~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~ 196 (621)
T 2hiv_A 135 SKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGD 196 (621)
T ss_dssp -CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCCCCCH
T ss_pred CCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCccCccH
Confidence 46889999999999999999999999999999999999999999999999999999998643
No 16
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=95.72 E-value=0.002 Score=54.72 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
+.+||+.+|++.++.||+..++++... .+..++.+|++.|.+++++.+.|-.++|..+
T Consensus 115 ~~~LTv~~V~~~L~~ia~~~g~~sq~~---~l~~l~~~~~~~E~k~l~R~i~~~lriG~~e 172 (579)
T 3l2p_A 115 KSLLTIQEVDEFLLRLSKLTKEDEQQQ---ALQDIASRCTANDLKCIIRLIKHDLKMNSGA 172 (579)
T ss_dssp SCCCBHHHHHHHHHHHHTCCSHHHHHH---HHHHHHTTCCSHHHHHHHHHHTTCCSSSCCH
T ss_pred CCCccHHHHHHHHHHHHhccCcHHHHH---HHHHHHHhCCHHHHHHHHHHHHhhhhcccch
Confidence 468999999999999999999998874 5667888999999999999999999988643
No 17
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=95.71 E-value=0.0017 Score=54.97 Aligned_cols=60 Identities=37% Similarity=0.677 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254 5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64 (147)
Q Consensus 5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~ 64 (147)
.+||+.+|++.++.||+..++++...+++.|..++.++++.+.+++++-+.|-.|+|...
T Consensus 109 ~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~~~e~~~l~rli~~~lriG~~~ 168 (561)
T 2cfm_A 109 QPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAEPLEAKYLARTILGTMRTGVAE 168 (561)
T ss_dssp CCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCCCCH
T ss_pred CCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHhccccccccH
Confidence 689999999999999999999999999999999999999999999999999999988643
No 18
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=52.61 E-value=11 Score=22.53 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q psy5254 2 FQPAPLTVATVFDKLKDI 19 (147)
Q Consensus 2 ~~~~~Ltv~~v~~~~~~i 19 (147)
|+.+|+|+++|..+++.+
T Consensus 8 ~~~kpMsveEAv~qmel~ 25 (65)
T 3ka5_A 8 FAIKPMSEEEAVLEMELL 25 (65)
T ss_dssp SCCSCBCHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHhC
Confidence 556899999999988865
No 19
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=50.00 E-value=11 Score=21.86 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHHHH
Q psy5254 2 FQPAPLTVATVFDKLKDI 19 (147)
Q Consensus 2 ~~~~~Ltv~~v~~~~~~i 19 (147)
|+.+|+|+++|..+++.+
T Consensus 8 ~~~kpmsveEAv~qmel~ 25 (57)
T 3k2t_A 8 FSLKPMDSEEAVLQMNLL 25 (57)
T ss_dssp ---CCBCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHhC
Confidence 446899999999988765
No 20
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=39.47 E-value=15 Score=21.99 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHHH
Q psy5254 2 FQPAPLTVATVFDKLKDI 19 (147)
Q Consensus 2 ~~~~~Ltv~~v~~~~~~i 19 (147)
|+.+|+|+++|..+++.+
T Consensus 9 ~~~kpMsveEAv~qMel~ 26 (66)
T 3lyv_A 9 VTLKPMDVEEARLQMELL 26 (66)
T ss_dssp CCCCEECHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHcC
Confidence 456899999999888754
No 21
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=35.97 E-value=21 Score=23.09 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q psy5254 14 DKLKDIAGMTGQASVSRKIDKI 35 (147)
Q Consensus 14 ~~~~~ia~~ly~~lf~~iv~~i 35 (147)
+++++++..+|..|+.-.+--|
T Consensus 6 ~t~~~~s~~Iy~nLl~~~i~dI 27 (99)
T 3mhs_C 6 ITIDSISNGILNNLLTTLIQDI 27 (99)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999998765544
No 22
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=21.91 E-value=30 Score=26.34 Aligned_cols=69 Identities=10% Similarity=0.237 Sum_probs=39.8
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhcCCcCc-----ce----eeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHHhhh
Q psy5254 18 DIAGMTGQASVSRKIDKIQSLFVACRHCE-----AR----YLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVF 87 (147)
Q Consensus 18 ~ia~~ly~~lf~~iv~~in~~L~~~~~~~-----~~----i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~~~~ 87 (147)
..||.+++++|....+.+|..+......+ .. -.+-.+..........+|++ |+-+|....+.+|...+-
T Consensus 31 ~WAr~lFe~lF~~~~~~~n~~l~dp~~~~~~~~~~~~~~~~~l~~i~~~L~~~~p~~~~~-c~~~Ar~~F~k~F~~~I~ 108 (276)
T 1z7l_A 31 QWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQTWGD-CVTWACHHWHTQYCNNIR 108 (276)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCSHHHHHHHTSSTTHHHHHHHHHHHHHTTTCCSSHHH-HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHhhcChHHHHHHHhccchhhHHHHHHHHHHHhhcCCCcHHH-HHHHHHHHHHHHHHHHHH
Confidence 58999999999998888888775421000 00 00000111110011234555 999998888888876654
Done!