RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5254
(147 letters)
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 125 bits (315), Expect = 3e-34
Identities = 46/86 (53%), Positives = 59/86 (68%)
Query: 60 IGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 119
G FEQLCINYANE LQYYFNQH+F+ EQEEY EGI W +IE++DN C+QL K
Sbjct: 389 FGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKK 448
Query: 120 PNGLLCVLDDQAKFSLIPPDDILCRY 145
P GLL +LD+++ F +L ++
Sbjct: 449 PTGLLYLLDEESNFPHATSQTLLAKF 474
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 124 bits (313), Expect = 8e-34
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F DN C+ L+E KP G+L
Sbjct: 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS 446
Query: 126 VLDDQAKF 133
+LD++ +F
Sbjct: 447 LLDEECRF 454
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 115 bits (291), Expect = 6e-31
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 65 HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F+DN + L+E KP GLL
Sbjct: 379 SFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLL 438
Query: 125 CVLDDQAKF 133
+LD++ F
Sbjct: 439 SLLDEECLF 447
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 109 bits (275), Expect = 9e-29
Identities = 38/68 (55%), Positives = 52/68 (76%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
FEQLCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF DN L L+ KP ++
Sbjct: 380 FEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMS 439
Query: 126 VLDDQAKF 133
++D+++KF
Sbjct: 440 LIDEESKF 447
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 109 bits (274), Expect = 1e-28
Identities = 39/68 (57%), Positives = 47/68 (69%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
FEQ CIN NE LQ +FNQHVF+ EQEEY KE I W +IEF DN L L+E KP G++
Sbjct: 385 FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIA 444
Query: 126 VLDDQAKF 133
+LD+ F
Sbjct: 445 LLDEACMF 452
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 108 bits (272), Expect = 2e-28
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
FEQLCINYANE LQ +FN H+F+ EQEEY +EGI W I++ DN C+ L+E KP G+L
Sbjct: 381 FEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDNQACIDLIEKKPPGIL 440
Query: 125 CVLDDQAKF 133
+LD++ +F
Sbjct: 441 SLLDEECRF 449
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 105 bits (263), Expect = 3e-27
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
FEQ CINYANE LQ FNQHVF+ EQEEY KEGI W I+F DN C+ L+E K G+L
Sbjct: 386 FEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESKL-GILS 444
Query: 126 VLDDQAK 132
+LD++ +
Sbjct: 445 LLDEECR 451
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 100 bits (251), Expect = 1e-25
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 6 PLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH 65
PLTV + D IA + + I ++ +L V+ I + G L+ +
Sbjct: 321 PLTVESAVDARDAIAKVLYALLFNWLITRVNAL-VSPTQDTLSIAILDIYGFE--DLSFN 377
Query: 66 -FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
FEQLCINYANE+LQY FN+ VFQ EQEEY +E + W I F+DN + L+ KP G+L
Sbjct: 378 SFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGIL 437
Query: 125 CVLDDQAKF 133
+LDDQ F
Sbjct: 438 RILDDQCCF 446
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 100 bits (250), Expect = 2e-25
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
FEQ CINYANE LQ +FN+H+F+ EQEEY ++GI W +EF DN CL L E KP GLL
Sbjct: 383 FEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLS 442
Query: 126 VLDDQAKFS 134
+LD+++ F
Sbjct: 443 LLDEESTFP 451
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 99.8 bits (249), Expect = 3e-25
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 124
FEQLCINY NE LQ +FNQH+F+ EQEEY KEGI W I++ DN C+ L+E K P G+L
Sbjct: 446 FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGIL 505
Query: 125 CVLDDQA 131
+LD++
Sbjct: 506 SLLDEEC 512
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 92.6 bits (230), Expect = 8e-23
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 8/89 (8%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
FEQLCIN ANE +QYYFNQH+F +EQ+EY EG+ R +E+ DN L + KP GLL
Sbjct: 391 FEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLA 450
Query: 126 VLDDQAKF------SLIPP--DDILCRYF 146
+LD++++F +L+ D++ ++F
Sbjct: 451 LLDEESRFPQATDQTLVEKFEDNLKSKFF 479
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 90.3 bits (225), Expect = 5e-22
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
FEQLCINY NE LQ +FN H+F EQEEY +EGI W I+F D + L+E P G+L
Sbjct: 392 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGIL 451
Query: 125 CVLDDQAKF 133
+LD++ F
Sbjct: 452 SLLDEECVF 460
>gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus. This region is
found in many but not all ATP-dependent DNA ligase
enzymes (EC:6.5.1.1). It is thought to be involved in
DNA binding and in catalysis. In human DNA ligase I, and
in Saccharomyces cerevisiae, this region was necessary
for catalysis, and separated from the amino terminus by
targeting elements. In vaccinia virus this region was
not essential for catalysis, but deletion decreases the
affinity for nicked DNA and decreased the rate of strand
joining at a step subsequent to enzyme-adenylate
formation.
Length = 177
Score = 84.2 bits (209), Expect = 2e-21
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 1 MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
+F+P PLTV V++ L IA ++G+ S KID ++ L EA+YLIR + G+LRI
Sbjct: 105 LFKPPPLTVQEVYETLDKIAKLSGKGSQDEKIDLLKKLLSRATPLEAKYLIRLILGELRI 164
Query: 61 GLAE 64
G+ E
Sbjct: 165 GVGE 168
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 88.4 bits (220), Expect = 2e-21
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 124
FEQ CINY NE LQ F + + EQEEY +EGI+W IE+ +N + L+EGK P G+
Sbjct: 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIF 443
Query: 125 CVLDD 129
+LDD
Sbjct: 444 SILDD 448
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 86.4 bits (214), Expect = 1e-20
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
FEQ CINY NE LQ +FN+ + + EQE Y +EG+ + + DN C+ L+E K NG+L
Sbjct: 415 FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILD 474
Query: 126 VLDDQAKF 133
+LD++ +
Sbjct: 475 ILDEENRL 482
>gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1). All proteins
in this family with known functions are ATP-dependent
DNA ligases. Functions include DNA repair, DNA
replication, and DNA recombination (or any process
requiring ligation of two single-stranded DNA sections).
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 514
Score = 78.5 bits (194), Expect = 7e-18
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 1 MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
F PAPLTV V++ LK IA ++G+ S +KI ++SL EA+YLIR + G LRI
Sbjct: 49 SFFPAPLTVKEVYEVLKFIARLSGEGSQDKKIKLLKSLLKRATPLEAKYLIRLILGDLRI 108
Query: 61 GLAE 64
G+AE
Sbjct: 109 GIAE 112
>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional.
Length = 744
Score = 71.6 bits (175), Expect = 2e-15
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 1 MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
M +P PLTV VF+ + IA +G+ S +K ++I++L VA CE YLIR L KLRI
Sbjct: 235 MRKPEPLTVVKVFNTFQQIAKESGKDSQEKKKNRIKALLVAATDCEPLYLIRLLQTKLRI 294
Query: 61 GLAEH 65
GLA
Sbjct: 295 GLAGQ 299
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 58.5 bits (142), Expect = 8e-11
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 67 EQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 126
EQL IN NE LQ F VF+ E + Y EGI +E++ N + L+ GK +L +
Sbjct: 481 EQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSI 540
Query: 127 LDDQ 130
L+DQ
Sbjct: 541 LEDQ 544
>gnl|CDD|234900 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional.
Length = 590
Score = 55.7 bits (135), Expect = 6e-10
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 2 FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIG 61
F PLTV V+D L IA TG+ S KI + L EA+Y+ R + G+LR+G
Sbjct: 110 FSKEPLTVKEVYDTLVKIALATGEGSQDLKIKLLAGLLKDASPLEAKYIARFVEGRLRLG 169
Query: 62 LAE 64
+ +
Sbjct: 170 VGD 172
>gnl|CDD|235108 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed.
Length = 508
Score = 41.1 bits (97), Expect = 7e-05
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 4 PAP-----LTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKL 58
PAP LTVA V L +IA + G S +R+ + +LF A E R+L R L G+L
Sbjct: 65 PAPAAEPTLTVADVDAALSEIAAVAGAGSQARRAALLAALFAAATEDEQRFLRRLLTGEL 124
Query: 59 RIG 61
R G
Sbjct: 125 RQG 127
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 41.0 bits (96), Expect = 8e-05
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 61 GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
A FE+LC NY E LQ F+ F E Y +EG+ +EF L E P
Sbjct: 392 DRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFD-------LAEPSP 441
Query: 121 NGLLCVLDDQAKFSLIPPD 139
+ ++D + ++P
Sbjct: 442 GTTVALVDQAPQQVVVPAG 460
>gnl|CDD|227338 COG5005, COG5005, Mu-like prophage protein gpG [General function
prediction only].
Length = 140
Score = 27.9 bits (62), Expect = 1.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 31 KIDKI----QSLFVACRHCEARY-LIRSLAGKLRIGLAEHFEQ 68
KID Q L + + R L+RS+AG +R + ++FE
Sbjct: 5 KIDNTSTIQQKLEALAQVTDGRKDLMRSVAGTMRSAVEKNFEL 47
>gnl|CDD|224403 COG1486, CelF, Alpha-galactosidases/6-phospho-beta-glucosidases,
family 4 of glycosyl hydrolases [Carbohydrate transport
and metabolism].
Length = 442
Score = 28.0 bits (63), Expect = 2.0
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 74 ANEHLQYYFNQHVFQYEQEEYNKEGIR---WRHIEFSDNTLCLQ-LVEGKPNGLL 124
++ H YY+ + + + +E K G R E L + ++ KP L
Sbjct: 255 SSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELE 309
>gnl|CDD|221303 pfam11902, DUF3422, Protein of unknown function (DUF3422). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 426 to 444 amino acids in length.
Length = 419
Score = 27.9 bits (63), Expect = 2.2
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 98 GIRW-RHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPD 139
+RW RH EFS T +P D A L+P D
Sbjct: 74 RLRWERHTEFSTYTFFRPGPGDEP------FDPPA-LELLPQD 109
>gnl|CDD|233451 TIGR01531, glyc_debranch, glycogen debranching enzymye. glycogen
debranching enzyme possesses two different catalytic
activities; oligo-1,4-->1,4-glucantransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site
directed mutagenesis studies in S. cerevisiae indicate
that the transferase and glucosidase activities are
independent and located in different regions of the
polypeptide chain. Proteins in this model belong to the
larger alpha-amylase family. The model covers eukaryotic
proteins with a seed composed of human, nematode and
yeast sequences. Yeast seed sequence is well
characterized. The model is quite rigorous; either query
sequence yields large bit score or it fails to hit the
model altogether. There doesn't appear to be any middle
ground [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 1464
Score = 26.7 bits (59), Expect = 6.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 37 SLFVACRHCEARYLIRSLAGKLRIGL 62
L R EAR +I + AG LR GL
Sbjct: 1049 MLLTTGRFDEARAIILAFAGTLRHGL 1074
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.436
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,582,523
Number of extensions: 666378
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 32
Length of query: 147
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 59
Effective length of database: 7,034,450
Effective search space: 415032550
Effective search space used: 415032550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.4 bits)