RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5254
(147 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 74.3 bits (182), Expect = 5e-17
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 65 HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448
Query: 125 CVLDDQAKF 133
+LD+
Sbjct: 449 SLLDEACLI 457
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 70.1 bits (171), Expect = 6e-16
Identities = 39/64 (60%), Positives = 50/64 (78%)
Query: 1 MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
M P PLT + VF K +DIA +TG AS ++KID I+ LFVACRH EAR++ RSL+G+LR+
Sbjct: 132 MLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRL 191
Query: 61 GLAE 64
GLAE
Sbjct: 192 GLAE 195
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 70.1 bits (171), Expect = 2e-15
Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 64 EHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 123
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+
Sbjct: 424 NSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGI 483
Query: 124 LCVLDDQAKF 133
+L+++ F
Sbjct: 484 FSILEEECMF 493
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 69.4 bits (169), Expect = 3e-15
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 65 HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 121
FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 397 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 456
Query: 122 GLLCVLDDQAKFSLIPPDDILCRYF 146
G+L +LD++ F + +
Sbjct: 457 GVLALLDEECWFPKATDTSFVEKLI 481
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 69.0 bits (168), Expect = 3e-15
Identities = 34/69 (49%), Positives = 44/69 (63%)
Query: 65 HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+L
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482
Query: 125 CVLDDQAKF 133
+L+++ F
Sbjct: 483 SILEEECMF 491
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 68.2 bits (166), Expect = 7e-15
Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 65 HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K G+L
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 444
Query: 125 CVLDDQAKF 133
+LD++ K
Sbjct: 445 DLLDEECKM 453
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 65.5 bits (159), Expect = 7e-14
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 65 HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNG 122
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P G
Sbjct: 418 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 477
Query: 123 LLCVLDDQAKFSLIPPDDILCRYF 146
+L +LD+Q+ F + ++ +
Sbjct: 478 ILALLDEQSVFPNATDNTLITKLH 501
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 107
Score = 26.4 bits (58), Expect = 0.85
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 94 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDD 140
Y E + R++ N +L G+L DD + +L+ PD
Sbjct: 52 YKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAADDGERVALLMPDK 98
>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
{Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
Length = 367
Score = 26.9 bits (59), Expect = 1.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 AGKLRIGLAEHFEQLCINYANEHLQ 79
AGKL +A E+L NY N ++
Sbjct: 26 AGKLPPNVAAGMEELYQNYRNAVIE 50
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 24.9 bits (54), Expect = 3.2
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 14 DKLKDIAGMTGQAS-----VSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQ 68
D L ++ ++G S V R Q F+ R C+ + R + + +
Sbjct: 30 DALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRHQYPF 89
Query: 69 LCINYANEHLQYYFNQHV------FQYEQEEYN 95
+ +N + + N Q E+
Sbjct: 90 VVLNISVDSECVDINVTPDKRQILLQEEKLLLA 122
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.2 bits (55), Expect = 4.2
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 71 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 109
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 424
Score = 24.6 bits (53), Expect = 5.5
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 13 FDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCIN 72
+K + T + +D L+V C + + KL + LC+N
Sbjct: 286 REKGHEYGTTTKRPRRCGWLDIPMLLYVKCINSIDMINLT----KLDVLSGLEEILLCVN 341
Query: 73 YANEHLQYYFNQHVFQYEQEEYNK 96
+ N+ + + E+E +
Sbjct: 342 FKNKKTGELLEKGCYPVEEEISEE 365
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific
methyltransferase SET7/9 N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 23.6 bits (51), Expect = 6.0
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 114 QLVEGKPNGLLCVLDDQAKFSLIPPDDILC 143
+++EGK L+ + + F L+P + +
Sbjct: 48 EMIEGKLATLMSTEEGRPHFELMPGNSVYH 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.436
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 572,302
Number of extensions: 25204
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 17
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.1 bits)