Query psy5257
Match_columns 295
No_of_seqs 179 out of 1789
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:46:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3660|consensus 100.0 6.7E-57 1.4E-61 449.3 18.4 277 15-293 183-578 (629)
2 KOG3659|consensus 100.0 1.2E-54 2.7E-59 420.6 18.2 282 12-293 218-618 (629)
3 PF00209 SNF: Sodium:neurotran 100.0 1.1E-51 2.4E-56 409.8 -1.4 260 17-278 151-523 (523)
4 COG0733 Na+-dependent transpor 100.0 1.8E-31 4E-36 254.5 8.6 205 22-242 127-403 (439)
5 PRK09928 choline transport pro 87.2 2 4.4E-05 44.5 7.5 69 89-160 358-430 (679)
6 PF02028 BCCT: BCCT family tra 84.7 1.3 2.8E-05 44.3 4.6 134 77-221 329-468 (485)
7 TIGR00842 bcct choline/carniti 76.7 9.8 0.00021 37.7 7.6 38 125-162 342-379 (453)
8 PRK09950 putative transporter; 76.5 13 0.00029 37.4 8.5 77 83-162 344-425 (506)
9 PRK03356 L-carnitine/gamma-but 75.0 12 0.00026 37.7 7.7 127 84-221 348-484 (504)
10 PF05525 Branch_AA_trans: Bran 52.4 37 0.0008 33.4 6.2 57 137-195 271-327 (427)
11 COG1292 BetT Choline-glycine b 51.1 38 0.00082 34.2 6.1 125 89-224 353-484 (537)
12 PRK15433 branched-chain amino 43.5 61 0.0013 32.1 6.2 130 46-194 197-329 (439)
13 COG1914 MntH Mn2+ and Fe2+ tra 32.7 2.8E+02 0.0061 27.3 8.8 36 138-173 283-318 (416)
14 PRK00701 manganese transport p 30.7 1.7E+02 0.0038 28.7 7.1 24 137-160 304-327 (439)
15 PF10624 TraS: Plasmid conjuga 27.2 1.3E+02 0.0029 24.8 4.6 69 216-285 30-105 (164)
16 PRK09928 choline transport pro 27.1 7.1E+02 0.015 26.2 11.0 127 78-213 138-269 (679)
17 TIGR00796 livcs branched-chain 26.0 1.9E+02 0.0041 28.0 6.4 133 46-195 187-321 (378)
18 PF13334 DUF4094: Domain of un 22.4 55 0.0012 25.3 1.5 19 182-200 4-22 (95)
19 COG1953 FUI1 Cytosine/uracil/t 20.1 5.4E+02 0.012 26.0 8.3 27 47-73 170-196 (497)
No 1
>KOG3660|consensus
Probab=100.00 E-value=6.7e-57 Score=449.27 Aligned_cols=277 Identities=45% Similarity=0.839 Sum_probs=261.1
Q ss_pred CCccCcHHhhhHHhhcccccCC--CCCCcccchHHHHHHHHHHHHHHHHHhhccccccceEEE-----------------
Q psy5257 15 PVFASAAGEYFSRYILEMQHST--GLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRK----------------- 75 (295)
Q Consensus 15 ~~~~s~~~eff~~~vL~~~~s~--~i~~~g~~~w~l~~~l~~~W~iv~~~i~kGi~~~gKv~y----------------- 75 (295)
.+..++.+++|.+..++. ++ ++++.|.++|++++|++++|++||+|++||+|++||++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRg 260 (629)
T KOG3660|consen 183 LNFNSPVAEFWENRVLSL--SDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRG 260 (629)
T ss_pred hhhccchhhhhhhhhccc--ccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHH
Confidence 345678999999999998 66 499999999999999999999999999999999999999
Q ss_pred ----e-----------------------------------------------------cCcceehhhhhhhhHhhhhHHH
Q psy5257 76 ----G-----------------------------------------------------NEDAILTSLINSCTSFIAGFVI 98 (295)
Q Consensus 76 ----G-----------------------------------------------------~~da~~v~~~n~~~Sllag~~v 98 (295)
| +||+.++++.|+.+|+++|+++
T Consensus 261 vTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~i 340 (629)
T KOG3660|consen 261 VTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAI 340 (629)
T ss_pred ccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHH
Confidence 1 9999999999999999999999
Q ss_pred HHHHHHHHHHhCC-CccccccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCC
Q psy5257 99 FSVLGYMAHISGV-PINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGN 177 (295)
Q Consensus 99 f~~lG~~a~~~~~-~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~ 177 (295)
|+++||+|++.|+ +.++++++|+||+|++||+++++||.+++|+.+||+|++++|++|++.++|.+++++.|+||.+|.
T Consensus 341 FsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp~~~~ 420 (629)
T KOG3660|consen 341 FSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLDSQFAIVETIVTAIVDEFPRLRN 420 (629)
T ss_pred HHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999 889999999999999999999999999999999999999999999999999999999999997788
Q ss_pred chhhhhHHHHHHHHHhhcccccccccccccchhHHhhhhHHHHHHHHHHHhhhhhhc-----------------------
Q psy5257 178 NREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG----------------------- 234 (295)
Q Consensus 178 ~R~~~~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~~l~e~i~~~~i~~----------------------- 234 (295)
+|+..++.+|+++|++|++++|++|.|+++++|+|++++.+++++++|++.+.|+||
T Consensus 421 ~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i~wiYG~~~~~~di~~M~g~~~~~~~~~~ 500 (629)
T KOG3660|consen 421 RRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAIAWVYGADRFRDDIHEMIGCGRPSPYWKL 500 (629)
T ss_pred cchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHHhheecccchHhhHHHHhCCCCCCHHHHH
Confidence 899999999999999999999999999999999999999999999999955555554
Q ss_pred -----------------ccccccCCCC-CcccCchhhhhhHHhhhhhhHHHHHHHHHHHHhCCCc-hHHhhhhhccCc
Q psy5257 235 -----------------LTTYEPLSYE-SYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGT-FMQDQEKTSRSS 293 (295)
Q Consensus 235 -----------------~~~~~~~~y~-~~~yp~W~~~~gw~l~~~~~~~Ip~~~i~~~~~~~G~-~~~r~~~~~~p~ 293 (295)
..+|+|.+|+ .|+||+|.+.+||+++++|+++||++++++++|.+|+ .+||+|+.++|+
T Consensus 501 ~W~f~tP~~~~~i~v~s~~~~~p~~y~~~~~yP~w~~~~Gw~~a~~~~~~iP~~ai~~~~~~~~~~~~~R~~~~~~p~ 578 (629)
T KOG3660|consen 501 CWKFVTPILLLGILVFSLVKYYPLKYNKVYVYPPWGDIVGWLVALSPLLVIPLYAIIQILRAKGTKLKERIKFLLRPL 578 (629)
T ss_pred HHHHhhhHHHHHHHHHHHHhccCccCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHhcCC
Confidence 3445788899 8899999999999999999999999999999999997 999999999995
No 2
>KOG3659|consensus
Probab=100.00 E-value=1.2e-54 Score=420.64 Aligned_cols=282 Identities=50% Similarity=0.820 Sum_probs=263.2
Q ss_pred CCCCCccCcHHhhhHHhhcccccCCCCCCcccchHHHHHHHHHHHHHHHHHhhccccccceEEE----------------
Q psy5257 12 TKAPVFASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRK---------------- 75 (295)
Q Consensus 12 ~~~~~~~s~~~eff~~~vL~~~~s~~i~~~g~~~w~l~~~l~~~W~iv~~~i~kGi~~~gKv~y---------------- 75 (295)
+.....++|++|||+|++|+++++.+++|.|+++|++++|++++|+++|++++||+|++||++|
T Consensus 218 ~~~~ek~s~a~ef~~r~~l~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illir 297 (629)
T KOG3659|consen 218 DEECEKTSPAQEFWYRKVLGLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVR 297 (629)
T ss_pred chhhhccchhHHHHHhhcccccccccccccCCCchHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHh
Confidence 3444568999999999999998888899999999999999999999999999999999999998
Q ss_pred -----e-----------------------------------------------------cCcceehhhhhhhhHhhhhHH
Q psy5257 76 -----G-----------------------------------------------------NEDAILTSLINSCTSFIAGFV 97 (295)
Q Consensus 76 -----G-----------------------------------------------------~~da~~v~~~n~~~Sllag~~ 97 (295)
| +|||++++.+|+.+|+++|++
T Consensus 298 gl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfv 377 (629)
T KOG3659|consen 298 GLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALLTSIINCLTSFLSGFV 377 (629)
T ss_pred cccccccccchhheecccHHHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 1 999999999999999999999
Q ss_pred HHHHHHHHHHH---hCCCccc-cccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccC
Q psy5257 98 IFSVLGYMAHI---SGVPINE-VAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP 173 (295)
Q Consensus 98 vf~~lG~~a~~---~~~~~~~-v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~ 173 (295)
+|+++|+||+. .+.+.++ +..+||||+|++|||++++||.+.+|+++||+|+..+|++|+++.+|.+++.+.|+++
T Consensus 378 iFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~s~~g~~e~iit~l~d~~~ 457 (629)
T KOG3659|consen 378 IFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLDSMFGGIEAIITPLLDEFY 457 (629)
T ss_pred HHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhHhhhhhHHHHhccccchhh
Confidence 99999999998 7777777 7789999999999999999999999999999999999999999999999999999995
Q ss_pred -CCCCchhhhhHHHHHHHHHhhcccccccccccccchhHHhhhhHHHHHHHHHHHhhhhhhccccc--------------
Q psy5257 174 -LIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY-------------- 238 (295)
Q Consensus 174 -~~~~~R~~~~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~~l~e~i~~~~i~~~~~~-------------- 238 (295)
.+|++|+..++.+|+..+++|+++++.+|.|+++++|+|+.++.++..+++|.+.+.|+||..++
T Consensus 458 ~~l~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~Mlg~~P~~ 537 (629)
T KOG3659|consen 458 LSLRKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSWVYGVRRFSADVKQMLGFRPGW 537 (629)
T ss_pred hHhhhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhCCCCch
Confidence 66789999999999999999999999999999999999999999999999999888888887653
Q ss_pred -------------------------ccCCCCCcccCchhhhhhHHhhhhhhHHHHHHHHHHHHhCCC-chHHhhhhhccC
Q psy5257 239 -------------------------EPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPG-TFMQDQEKTSRS 292 (295)
Q Consensus 239 -------------------------~~~~y~~~~yp~W~~~~gw~l~~~~~~~Ip~~~i~~~~~~~G-~~~~r~~~~~~p 292 (295)
+|.++.+|.||+|+.++||.++.+++++||.+++|++++.+| +.+||+++.+.|
T Consensus 538 yw~v~w~~vsp~~ll~if~~~~~~~~~~~~~~y~yp~Wa~~l~~~i~~ss~~~ip~~~~y~~~~~~~~~~~~~~~~~~~p 617 (629)
T KOG3659|consen 538 YWRVCWPCVSPVFLLFIFVFSLRNFSPIQVVIYAYPDWALVLGWAIRASSKICIPLYAIYKFVSRRGVSGKERLHRWITP 617 (629)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHhccccceEEeecCCchHHHHHHHHHhhHHHHHhHHhhheeeecCCCCchhhcccccCC
Confidence 344555689999999999999999999999999999999887 999999999888
Q ss_pred c
Q psy5257 293 S 293 (295)
Q Consensus 293 ~ 293 (295)
.
T Consensus 618 ~ 618 (629)
T KOG3659|consen 618 E 618 (629)
T ss_pred C
Confidence 5
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=100.00 E-value=1.1e-51 Score=409.83 Aligned_cols=260 Identities=45% Similarity=0.859 Sum_probs=186.5
Q ss_pred ccCcHHhhhHHhhcccccCCCCCCcccchHHHHHHHHHHHHHHHHHhhccccccceEEE---------------------
Q psy5257 17 FASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRK--------------------- 75 (295)
Q Consensus 17 ~~s~~~eff~~~vL~~~~s~~i~~~g~~~w~l~~~l~~~W~iv~~~i~kGi~~~gKv~y--------------------- 75 (295)
.++|++|||++++||. ++++++.|+++|++++|++++|+++++++.||+|+.||++|
T Consensus 151 ~~~~~~~ff~~~vl~~--s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ 228 (523)
T PF00209_consen 151 RISPAEEFFYREVLQI--SDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLP 228 (523)
T ss_dssp --------------------------------HHHHHHHHHHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-E
T ss_pred cccccccccccccccc--ccccccccchhHHHHHHHHHHHHHHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCC
Confidence 4578999999999999 89999999999999999999999999999999999999987
Q ss_pred e-----------------------------------------------------cCcceehhhhhhhhHhhhhHHHHHHH
Q psy5257 76 G-----------------------------------------------------NEDAILTSLINSCTSFIAGFVIFSVL 102 (295)
Q Consensus 76 G-----------------------------------------------------~~da~~v~~~n~~~Sllag~~vf~~l 102 (295)
| .||+.++++.|+++|++||+++|+++
T Consensus 229 ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~ 308 (523)
T PF00209_consen 229 GASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVL 308 (523)
T ss_dssp EHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHH
T ss_pred CCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHH
Confidence 1 88999999999999999999999999
Q ss_pred HHHHHHhCCCccccccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCCchhhh
Q psy5257 103 GYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIF 182 (295)
Q Consensus 103 G~~a~~~~~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~~R~~~ 182 (295)
||++++.|.+++++.++||||+|+++|+++++||++++|+++||+|++++|++|+++++|++++.++|+++..|++|+++
T Consensus 309 g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~~~~r~~~ 388 (523)
T PF00209_consen 309 GFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEFPISRKKRKKV 388 (523)
T ss_dssp HHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----HHHHH
T ss_pred hhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecCccchhhccce
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999766789999
Q ss_pred hHHHHHHHHHhhcccccccccccccchhHHhhhhHHHHHHHHHHHhhhhhhccccc------------------------
Q psy5257 183 IACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY------------------------ 238 (295)
Q Consensus 183 ~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~~l~e~i~~~~i~~~~~~------------------------ 238 (295)
+..+|+.++++|++++|++|.|++|++|++.+++.+++++++|++.+.|+||.+++
T Consensus 389 ~~~v~~~~~l~gl~~~t~~G~~~~~~~d~~~~~~~l~~~~l~e~i~v~wvyG~~~~~~di~~~~g~~~~~~w~~~w~~v~ 468 (523)
T PF00209_consen 389 TLIVCLVGFLLGLPFCTQGGIYIFDLLDDYVGSISLLIIALLECIAVGWVYGWDRFREDINEMLGFKPGKFWKFLWKYVT 468 (523)
T ss_dssp HHHHHHHHHHHHHHHHBT---THHHHHHHHTTTHHHHHHHHHHHHHHHTTSTHHHHHHHHHTT-SS---THHHHHHHTHH
T ss_pred eHHHhhhHeEeccccccccHHHhcchHhhcchhHHHHHHHHHHHHheeccccceehhhhhcccccccHHHHHHhhEEEee
Confidence 99999999999999999999999999999999999999999999888888876543
Q ss_pred ---------------ccCCCCCcccCchhhhhhHHhhhhhhHHHHHHHHHHHHhC
Q psy5257 239 ---------------EPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIIT 278 (295)
Q Consensus 239 ---------------~~~~y~~~~yp~W~~~~gw~l~~~~~~~Ip~~~i~~~~~~ 278 (295)
++.+|++|.||.|+..+||+++++++++||++++|+++|+
T Consensus 469 Pi~ll~ili~~i~~~~~~~~~~~~yp~w~~~igw~i~~~~~l~Ip~~~i~~~~~~ 523 (523)
T PF00209_consen 469 PIILLVILIWSIIDYKPLSYNSYIYPWWAIAIGWLIALSPLLPIPIYAIYKICRT 523 (523)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHSS-TTHHHHHHHH---------------------
T ss_pred cccccceeeeeEEecCCCCCcceEEhHheEEEEEEecccccccccccccccccCC
Confidence 2334456789999999999999999999999999999974
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=99.97 E-value=1.8e-31 Score=254.45 Aligned_cols=205 Identities=30% Similarity=0.410 Sum_probs=180.2
Q ss_pred HhhhHHhhcccccCCCCCCcccchHHHHHHHHHHHHHHHHHhhccccccceEEE------------------e-------
Q psy5257 22 GEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRK------------------G------- 76 (295)
Q Consensus 22 ~eff~~~vL~~~~s~~i~~~g~~~w~l~~~l~~~W~iv~~~i~kGi~~~gKv~y------------------G------- 76 (295)
.|++.+...+. +++ .+.....+.+++++++.++..|+.||||+.+|++| |
T Consensus 127 ~~~~~~~f~~~--~~~---~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f 201 (439)
T COG0733 127 GEQFAQLFGQT--ISN---PGLAVIFHLLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKF 201 (439)
T ss_pred hhHHHHHHHHH--hcC---chHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 45555555555 332 34445556888999999999999999999999998 1
Q ss_pred ----------------------------------------------cCcceehhhhhhhhHhhhhHHHHHHHHHHHHHhC
Q psy5257 77 ----------------------------------------------NEDAILTSLINSCTSFIAGFVIFSVLGYMAHISG 110 (295)
Q Consensus 77 ----------------------------------------------~~da~~v~~~n~~~Sllag~~vf~~lG~~a~~~~ 110 (295)
.+++..+++.|+.+|++||++|||.++.+ +
T Consensus 202 ~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~----g 277 (439)
T COG0733 202 LFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSF----G 277 (439)
T ss_pred HhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----c
Confidence 88999999999999999999999999765 4
Q ss_pred CCccccccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCCchhhhhHHHHHHH
Q psy5257 111 VPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLY 190 (295)
Q Consensus 111 ~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~~R~~~~~~~~~~~ 190 (295)
.++ ++||||+|+++|++|++||.+++++++||+.+.+||+||.++++|++++.++|+++ .+|+++++.++.+.
T Consensus 278 ~~~----~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~~---~~R~~a~~~~~~~~ 350 (439)
T COG0733 278 ADA----SQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKFG---ISRKKATWLIGILI 350 (439)
T ss_pred cCC----CCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cchHHHHHHHHHHH
Confidence 443 58999999999999999999999999999999999999999999999999999986 78999999999999
Q ss_pred HHhhcccccccccccccchhHHhhhhHHHHHHHHHHHhhhhhhcccc-cccCC
Q psy5257 191 FVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTT-YEPLS 242 (295)
Q Consensus 191 fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~~l~e~i~~~~i~~~~~-~~~~~ 242 (295)
|++|+|+.+..|.+++|.+|+.++++.++++++++++++.|+++.++ .++.+
T Consensus 351 fl~gi~~~ls~g~~~fD~~D~~~s~~l~plgaL~~~i~~~w~~~~~~~~~~~~ 403 (439)
T COG0733 351 FLLGIPSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKELLREELN 403 (439)
T ss_pred HHHhHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998554 33443
No 5
>PRK09928 choline transport protein BetT; Provisional
Probab=87.20 E-value=2 Score=44.49 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=40.2
Q ss_pred hhHhhhhHHHHHHHHHHHHHh---C-CCccccccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCC
Q psy5257 89 CTSFIAGFVIFSVLGYMAHIS---G-VPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGG 160 (295)
Q Consensus 89 ~~Sllag~~vf~~lG~~a~~~---~-~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~ 160 (295)
++--+.+++-|++.|.-|-.. | .+..+...+++ -.++-+.++++|++.+.+.++.+++++.=++|.=+.
T Consensus 358 lvPsl~~~~WfsIfGgsal~l~~~g~~~l~~~~~~~~---~~alf~~l~~lP~~~i~~~l~~il~~iFfvTSaDS~ 430 (679)
T PRK09928 358 IIPFTFTLLWLSIFGNSALYEIIHGNAAFAEEAMAHP---ERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSG 430 (679)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHcCCccHHHHhhcch---hhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcchHH
Confidence 333344455566766544332 2 12222222343 245678899999999999888877766656665444
No 6
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=84.70 E-value=1.3 Score=44.26 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=71.7
Q ss_pred cCcceehhhhhhhhHhhhhHHHHHHHHHHHHHh---C-CCccccccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHh
Q psy5257 77 NEDAILTSLINSCTSFIAGFVIFSVLGYMAHIS---G-VPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTL 152 (295)
Q Consensus 77 ~~da~~v~~~n~~~Sllag~~vf~~lG~~a~~~---~-~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~ 152 (295)
-|..-...+.+...--+.+++-|++.|--+-.. | .+..+..++|+. .+.-+.++++|.+++...+|.+++++.
T Consensus 329 GRTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~---~a~~~~l~~lP~~~i~~~~~lil~~~f 405 (485)
T PF02028_consen 329 GRTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPE---AALFAFLEQLPLSKILSILFLILIFIF 405 (485)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HH---HHHHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchh---hHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455555666677777777777788887654432 2 222222345543 234577899999999998888777665
Q ss_pred hhccCCCCCcceehhhhh--ccCCCCCchhhhhHHHHHHHHHhhcccccccccccccchhHHhhhhHHHHH
Q psy5257 153 GLDSSFGGSEAIITALSD--EFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIA 221 (295)
Q Consensus 153 gl~S~i~~lE~ivt~l~D--~f~~~~~~R~~~~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~ 221 (295)
=.+|.=+...++-+.-.+ +-| .++.|+.+ |++...+++.....+| +|.+.....-..+|+.
T Consensus 406 ~vTs~DS~~~~la~~s~~~~~ep---~~~~ri~W--~~~~~~~a~~ll~~gg---l~~lq~~~ii~~lP~~ 468 (485)
T PF02028_consen 406 FVTSADSATYVLAMLSSKGDEEP---PRWLRIFW--GLIIGALAIVLLLIGG---LDALQSASIIGGLPFS 468 (485)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSSS----HHHHHHH--HHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHcCCCCCC---chHHHHHH--HHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHH
Confidence 555544443333333222 222 23334433 3333344444444466 5556655443334433
No 7
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=76.69 E-value=9.8 Score=37.72 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=28.0
Q ss_pred EeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCc
Q psy5257 125 FIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSE 162 (295)
Q Consensus 125 Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE 162 (295)
-.+.-+.++++|.+++...++.+.+++.=.+|.=+..-
T Consensus 342 ~~a~~~~l~~lP~~~i~~~l~~il~~if~vTs~DS~s~ 379 (453)
T TIGR00842 342 ARALFGLLQALPLGTITSALALIVIIIFFITSADSGAL 379 (453)
T ss_pred hhHHHHHHHHCcHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34677889999999999988888776665666544433
No 8
>PRK09950 putative transporter; Provisional
Probab=76.52 E-value=13 Score=37.35 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=44.3
Q ss_pred hhhhhhhhHhhhhHHHHHHHHHHHHH---hCC-Cccccc-cCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccC
Q psy5257 83 TSLINSCTSFIAGFVIFSVLGYMAHI---SGV-PINEVA-VEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSS 157 (295)
Q Consensus 83 v~~~n~~~Sllag~~vf~~lG~~a~~---~~~-~~~~v~-~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~ 157 (295)
..+...+.--+.+++-|++.|--+-. .|. +..+.. ++|+ -.+.-+.++++|.+.+.+.++.+.++..=.+|.
T Consensus 344 ~ilg~l~~psl~~~~wf~ifGg~ai~l~~~g~~~~~~~~~~~~~---~~a~~~~l~~lP~~~i~~~l~~vl~~if~vTs~ 420 (506)
T PRK09950 344 VIWGLILGSSVGCWFFFGVLESYAIHQFINGVINVPQILNTLGG---ETAVQQLLSSLPAGKLFLAAYLGIMIIFLASHM 420 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHccCc---chHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444455566776644332 221 222222 3343 445667899999999999988887766656665
Q ss_pred CCCCc
Q psy5257 158 FGGSE 162 (295)
Q Consensus 158 i~~lE 162 (295)
=+..-
T Consensus 421 DS~s~ 425 (506)
T PRK09950 421 DAVAY 425 (506)
T ss_pred hHHHH
Confidence 44433
No 9
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=75.04 E-value=12 Score=37.66 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=63.0
Q ss_pred hhhhhhhHhhhhHHHHHHHHHHHHH---hC-CCccc-cccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCC
Q psy5257 84 SLINSCTSFIAGFVIFSVLGYMAHI---SG-VPINE-VAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSF 158 (295)
Q Consensus 84 ~~~n~~~Sllag~~vf~~lG~~a~~---~~-~~~~~-v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i 158 (295)
.+...+.--+.+++-|++.|-.+-. .| .+..+ +.++|+ -.+.-+.++++|.+.+.++++.+++++.=++|.=
T Consensus 348 ilg~l~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~~~~---~~alf~~l~~lPl~~i~~~l~~il~~if~vTsaD 424 (504)
T PRK03356 348 CFGMVLGLTASTWILWTVLGSNTLLLMDKNIINIPNLIEQYGV---ARAIIETWAALPLSTATMWGFFILCFIATVTLIN 424 (504)
T ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHHHHcCchhHHHHHhccCh---hhHHHHHHHHCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333344444455556666644332 22 12222 223342 2456688999999999998888877665555554
Q ss_pred CCCcceehhhhh-----ccCCCCCchhhhhHHHHHHHHHhhcccccccccccccchhHHhhhhHHHHH
Q psy5257 159 GGSEAIITALSD-----EFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIA 221 (295)
Q Consensus 159 ~~lE~ivt~l~D-----~f~~~~~~R~~~~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~ 221 (295)
+..-++-+.-.+ +-| .++.|+.+.+.....-+.+ ...+| ++-++..+.-..+|+.
T Consensus 425 S~t~vla~~ts~g~~~~~~p---~~~~ri~W~v~ig~ia~~L--l~~GG---l~~lQt~sii~alPf~ 484 (504)
T PRK03356 425 ACSYTLAMSTCREVRDGEEP---PLLVRIGWSILVGIIGIVL--LALGG---LKPIQTAIIAGGCPLF 484 (504)
T ss_pred HHHHHHHHHHcCCCCCCCCC---CcchhhHHHHHHHHHHHHH--HHhcC---HHHHHHHHHHHHHHHH
Confidence 433333322221 222 2334454444433333333 33356 5555555443344443
No 10
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=52.42 E-value=37 Score=33.45 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=46.0
Q ss_pred CchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCCchhhhhHHHHHHHHHhhc
Q psy5257 137 GSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGL 195 (295)
Q Consensus 137 ~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~~R~~~~~~~~~~~fllgl 195 (295)
.|+.-.+++=+.+++|++++.++++-..-..++|.+| |.+.+..+.+.|+..++++.
T Consensus 271 ~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~--kisY~~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 271 FGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP--KISYKVWVIIFTIFSFIIAN 327 (427)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccChHHHHHHHHHHHHHHHH
Confidence 5677778888889999999999999999999999887 45666667777777776654
No 11
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=51.13 E-value=38 Score=34.24 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=64.6
Q ss_pred hhHhhhhHHHHHHHHHHHHHhCCC----c-cccccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcc
Q psy5257 89 CTSFIAGFVIFSVLGYMAHISGVP----I-NEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEA 163 (295)
Q Consensus 89 ~~Sllag~~vf~~lG~~a~~~~~~----~-~~v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ 163 (295)
+..-+-+..=|++.|--|-..... . ..+..+|+.. ++=+.++++|.+++-+.++.+.++...++|.=+..-+
T Consensus 353 ~~P~~~~~~wftVfG~~ai~~~~~~~~~~~~~~~~~~~e~---alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~v 429 (537)
T COG1292 353 LIPTLFTWLWFTVFGNYALYLIINGGGGILGLVTTEGPET---ALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYV 429 (537)
T ss_pred HHhHHHHHHHHHHHhhhHHHHHhccccchhhhhhccchhh---HHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 333334445566766554433221 1 1122233332 2346788999999999999888888888776554322
Q ss_pred eehhhh--hccCCCCCchhhhhHHHHHHHHHhhcccccccccccccchhHHhhhhHHHHHHHH
Q psy5257 164 IITALS--DEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLF 224 (295)
Q Consensus 164 ivt~l~--D~f~~~~~~R~~~~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~~l~ 224 (295)
+-..-. ++.| .++.++.+.++.... ++.....+| ++-+...+.-..+|+....
T Consensus 430 l~~~ss~~~~~p---p~~~r~~W~v~~~~i--a~~lL~~gg---l~aLqt~~ii~alPF~~vl 484 (537)
T COG1292 430 LAMISSRGGEDP---PRWVRVFWGVLIGLI--AAVLLLIGG---LEALQTAAIITALPFSLVL 484 (537)
T ss_pred HHHHhccCCCCC---hHHHHHHHHHHHHHH--HHHHHHhCC---HHHHHHHHHHHHccHHHHH
Confidence 221111 2232 345555554444333 333334455 5556655544445554433
No 12
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=43.55 E-value=61 Score=32.09 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccceEEEecCcceehhhhhhhhHhhhhHHH---HHHHHHHHHHhCCCccccccCCCc
Q psy5257 46 WDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVI---FSVLGYMAHISGVPINEVAVEGPG 122 (295)
Q Consensus 46 w~l~~~l~~~W~iv~~~i~kGi~~~gKv~yG~~da~~v~~~n~~~Sllag~~v---f~~lG~~a~~~~~~~~~v~~~G~g 122 (295)
-+....+..+.+++--.-.||++.-.+ +.-.....+++|+... +.-++|+........++ .++|.
T Consensus 197 MDalaal~Fg~iii~~i~~~G~~~~~~----------~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~-~~~g~- 264 (439)
T PRK15433 197 MDTLGAMVFGIVIVNAARSRGVTEARL----------LTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQ-SANGA- 264 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-CCcHh-
Confidence 446777888888777777788853222 1112223345554433 33344442221111111 11232
Q ss_pred EEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCCchhhhhHHHHHHHHHhh
Q psy5257 123 LVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVG 194 (295)
Q Consensus 123 L~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~~R~~~~~~~~~~~fllg 194 (295)
..|....+.-.|+.-..++=+.++++.+++.++++-...+.+++.++ .+.+..+.+.|+..++++
T Consensus 265 ----~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 265 ----AILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---LSYRTLVFILGGFSMVVS 329 (439)
T ss_pred ----HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHHHHHHH
Confidence 24554554456777778888888899999999998888888888765 456666777777777654
No 13
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=32.69 E-value=2.8e+02 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHhhhccCCCCCcceehhhhhccC
Q psy5257 138 SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP 173 (295)
Q Consensus 138 ~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~ 173 (295)
++.-..+|=..++.+|++|....--.-...+++..+
T Consensus 283 G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~ 318 (416)
T COG1914 283 GSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLN 318 (416)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhc
Confidence 466677777888888998877655544444555443
No 14
>PRK00701 manganese transport protein MntH; Reviewed
Probab=30.67 E-value=1.7e+02 Score=28.75 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=18.1
Q ss_pred CchhHHHHHHHHHHHhhhccCCCC
Q psy5257 137 GSIFWSLIFFMMLLTLGLDSSFGG 160 (295)
Q Consensus 137 ~~~~ws~lFF~~l~~~gl~S~i~~ 160 (295)
.|+.-..+|-+-++.+|++|.+..
T Consensus 304 ~G~~a~~lFaiGL~aag~sS~i~~ 327 (439)
T PRK00701 304 LGAAAATLFGIALLASGLSSTVVG 327 (439)
T ss_pred HhHHHHHHHHHHHHHhHhHHHhHH
Confidence 456666777788888999987663
No 15
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=27.15 E-value=1.3e+02 Score=24.81 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHhhhhhhcccccccCCCCCccc--CchhhhhhHHhhhhhhHHHHHHHHHHHHh---CCC--chHHh
Q psy5257 216 YSILIAVLFESIAFIIVYGLTTYEPLSYESYVY--PQWANVLGVVIASSSVIMIPGMAVYQMII---TPG--TFMQD 285 (295)
Q Consensus 216 ~~l~~~~l~e~i~~~~i~~~~~~~~~~y~~~~y--p~W~~~~gw~l~~~~~~~Ip~~~i~~~~~---~~G--~~~~r 285 (295)
+.+.++++.+ .++.|++.-++-++..-+.|++ .-|-...+.+-.++|+++.-++.++.+|. -.| +.+|-
T Consensus 30 fil~f~~lWq-glFiwlF~qIrkKr~v~defkfsk~vwyi~mpVcsllsPllsLM~fI~gtL~~lrrvsgcisik~w 105 (164)
T PF10624_consen 30 FILLFIVLWQ-GLFIWLFIQIRKKRNVSDEFKFSKGVWYILMPVCSLLSPLLSLMVFIIGTLYELRRVSGCISIKEW 105 (164)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCcchhccccceEEeeecHHHHHhHHHHHHHHHHHHHHHHHHhhcceeHHHH
Confidence 4555666666 4667888766655555444544 46778888888888888776666665553 345 55543
No 16
>PRK09928 choline transport protein BetT; Provisional
Probab=27.06 E-value=7.1e+02 Score=26.25 Aligned_cols=127 Identities=14% Similarity=0.187 Sum_probs=54.6
Q ss_pred CcceehhhhhhhhHhhhhHHHHH-HHHHHHHHhCCCccccccCCCcEEEeehHHHHhc--CCCchhHHHHHHHHHHHhhh
Q psy5257 78 EDAILTSLINSCTSFIAGFVIFS-VLGYMAHISGVPINEVAVEGPGLVFIVYPAAIAT--MPGSIFWSLIFFMMLLTLGL 154 (295)
Q Consensus 78 ~da~~v~~~n~~~Sllag~~vf~-~lG~~a~~~~~~~~~v~~~G~gL~Fi~~P~a~~~--mp~~~~ws~lFF~~l~~~gl 154 (295)
+.|+...+.|=...--|--++.+ .++|.+++.|.|.. + ++. + +|-.=.+ =|.|+.-=++. +.-.+.|+
T Consensus 138 ~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~~pl~-i-ssa----l--~pllG~ri~G~~G~~IDi~a-v~~tvfGi 208 (679)
T PRK09928 138 RQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLT-I-RSA----L--YPIFGKRINGPIGHSVDIAA-VIGTIFGI 208 (679)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCCCCc-h-hHh----h--hhhcCCCCCCCchhHHHHHH-HHHHHHHH
Confidence 34555555555554444333333 36788888877642 1 110 0 1111011 12333332222 22233455
Q ss_pred ccCCCC-CcceehhhhhccCCC-CCchhhhhHHHHHHHHHhhcccccccccccccchhHHh
Q psy5257 155 DSSFGG-SEAIITALSDEFPLI-GNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYA 213 (295)
Q Consensus 155 ~S~i~~-lE~ivt~l~D~f~~~-~~~R~~~~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~ 213 (295)
.+.+++ ..-+-+.+...|+.- ...-+....++..+.+.++...-.+.|+..+..++-+.
T Consensus 209 aTSLGlGv~qi~~GL~~lfGi~~~~~~q~~ii~vi~~i~~~S~~sGl~KGIk~LS~lN~~L 269 (679)
T PRK09928 209 ATTLGIGVVQLNYGLSVLFDIPESLAAQAALIALSVIIATISVTSGVNKGIRVLSELNVLL 269 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 222333444444311 11123333344455555555555567777666555543
No 17
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=26.04 E-value=1.9e+02 Score=27.97 Aligned_cols=133 Identities=12% Similarity=0.129 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccceEEEecCcceehhhhhhhhHhhhhHHHHHHHHHHHHHhCCCcccccc--CCCcE
Q psy5257 46 WDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAV--EGPGL 123 (295)
Q Consensus 46 w~l~~~l~~~W~iv~~~i~kGi~~~gKv~yG~~da~~v~~~n~~~Sllag~~vf~~lG~~a~~~~~~~~~v~~--~G~gL 123 (295)
.+....+...|+++--.-.||+|.-.|..- .....+++++....-+.+.+++--..+.++..+ +|..+
T Consensus 187 mD~laal~fg~iiv~~i~~~g~~~~~~~~~----------~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~ 256 (378)
T TIGR00796 187 MDALAALVFGIIVVNAIRSRGVTKPKKITK----------YTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQI 256 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHH
Confidence 456788999999888777778875554221 111222333332222222222211111111111 12211
Q ss_pred EEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCCchhhhhHHHHHHHHHhhc
Q psy5257 124 VFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGL 195 (295)
Q Consensus 124 ~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~~R~~~~~~~~~~~fllgl 195 (295)
+.+ .++.-.|+.=..+.=..++++.+++.++.+-..-..+.+.++ |.+.+..+...|+.+++++.
T Consensus 257 ----l~~-~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~--k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 257 ----LSA-YSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP--KLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred ----HHH-HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHH
Confidence 112 122223444445555566778888888887777777777655 35666666677777776654
No 18
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=22.44 E-value=55 Score=25.27 Aligned_cols=19 Identities=16% Similarity=0.273 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhhcccccc
Q psy5257 182 FIACLFSLYFVVGLASCAQ 200 (295)
Q Consensus 182 ~~~~~~~~~fllgl~~~t~ 200 (295)
.++++|+.+|++|+.++.+
T Consensus 4 w~l~Lc~~SF~~G~lft~R 22 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTNR 22 (95)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4678899999999988643
No 19
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=20.12 E-value=5.4e+02 Score=25.98 Aligned_cols=27 Identities=15% Similarity=0.477 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccccceE
Q psy5257 47 DMALCLLAVYLICYFSMWKGISTSGKV 73 (295)
Q Consensus 47 ~l~~~l~~~W~iv~~~i~kGi~~~gKv 73 (295)
...+|.++-|++-..++++|.|+..|.
T Consensus 170 ~~~i~F~ifW~l~~l~~~~g~~~Ir~~ 196 (497)
T COG1953 170 LELICFFIFWVLQLLVLFKGMESIRKF 196 (497)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 347999999999999999999988774
Done!