Query psy5257
Match_columns 295
No_of_seqs 179 out of 1789
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:47:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 2.4E-45 8.1E-50 361.1 3.1 233 19-265 142-495 (519)
2 4ain_A Glycine betaine transpo 46.4 41 0.0014 32.8 7.0 122 89-221 363-490 (539)
3 3dh4_A Sodium/glucose cotransp 31.5 1.7E+02 0.006 27.8 8.9 43 127-171 309-351 (530)
4 2wsw_A BCCT family betaine/car 22.5 1E+02 0.0035 29.7 5.3 71 83-156 352-427 (509)
5 2a65_A Leutaa, Na(+):neurotran 14.5 43 0.0015 32.4 0.5 20 122-142 226-245 (519)
6 3tlw_A GLR4197 protein, GLIC; 14.1 2.6E+02 0.009 24.4 5.7 49 185-234 236-285 (321)
7 1jdm_A Sarcolipin; helix, memb 12.5 1.2E+02 0.004 17.4 1.7 12 48-59 15-26 (31)
8 1q90_L Cytochrome B6F complex 9.0 2.9E+02 0.01 16.1 2.7 13 57-69 19-31 (32)
9 3arc_X Photosystem II PSBX pro 8.5 3E+02 0.01 16.8 2.7 20 82-101 3-22 (39)
10 2jln_A MHP1; hydantoin, transp 6.8 9.7E+02 0.033 22.2 7.0 52 142-194 298-351 (501)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=100.00 E-value=2.4e-45 Score=361.15 Aligned_cols=233 Identities=19% Similarity=0.230 Sum_probs=207.9
Q ss_pred CcHHhhhHHhhcccccCCCCCCcccchHHHHHHHHHHHHHHHHHhhccc-cccceEEE---------------------e
Q psy5257 19 SAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGI-STSGKVRK---------------------G 76 (295)
Q Consensus 19 s~~~eff~~~vL~~~~s~~i~~~g~~~w~l~~~l~~~W~iv~~~i~kGi-~~~gKv~y---------------------G 76 (295)
+|++|||+ ++++. ++++++.|+++|++++|++++|++++++++||| |.++|+.| |
T Consensus 142 ~~~~~~f~-~~l~~--~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpG 218 (519)
T 2a65_A 142 RPFKEFLY-SYIGV--PKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLET 218 (519)
T ss_dssp HHHHHHHH-HHHTC--CSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CcHHHHHH-HHHCC--CCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35557775 57888 889999999999999999999999999999999 66888766 1
Q ss_pred ---------------------------------------------------------cCcceehhhhhhhhHhhhhHHHH
Q psy5257 77 ---------------------------------------------------------NEDAILTSLINSCTSFIAGFVIF 99 (295)
Q Consensus 77 ---------------------------------------------------------~~da~~v~~~n~~~Sllag~~vf 99 (295)
.||+.++++.|+++|++||++||
T Consensus 219 p~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF 298 (519)
T 2a65_A 219 PNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSIS 298 (519)
T ss_dssp TTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999
Q ss_pred HHHHHHHHHhCCC-ccccccCC-CcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCC
Q psy5257 100 SVLGYMAHISGVP-INEVAVEG-PGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGN 177 (295)
Q Consensus 100 ~~lG~~a~~~~~~-~~~v~~~G-~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~ 177 (295)
+.+||++ .|.+ ++|++++| |||+|++||+++++||++++|+++||+|++++|+||+++++|++++.++|+++ .
T Consensus 299 ~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~---~ 373 (519)
T 2a65_A 299 IPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK---L 373 (519)
T ss_dssp HHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---C
T ss_pred HHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhC---C
Confidence 9999987 5777 77777889 99999999999999999999999999999999999999999999999999986 5
Q ss_pred chhhhhHHHHHHHHHhhccccccc-ccccccchhHHhhhhHHHHHHHHHHHhhhhhhccccc------------------
Q psy5257 178 NREIFIACLFSLYFVVGLASCAQG-GFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY------------------ 238 (295)
Q Consensus 178 ~R~~~~~~~~~~~fllgl~~~t~~-G~y~~~l~D~~~~~~~l~~~~l~e~i~~~~i~~~~~~------------------ 238 (295)
+|++++..+|+++|++|+|++|++ | +|++|++++++.+++++++|++.+.|+|+..+.
T Consensus 374 ~R~~~~~~v~~~~fllgl~~~~~~~g---~~~~D~~~~~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~ 450 (519)
T 2a65_A 374 SRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYY 450 (519)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCC---cchHHHHHhHHHHHHHHHHHHHhhheeeehhHHHHHHHcccCCchHHHHHH
Confidence 799999999999999999999998 7 999999999999999999999888888876542
Q ss_pred ---------------------ccCCCCCcccCchhhhhhHHhhhhhhH
Q psy5257 239 ---------------------EPLSYESYVYPQWANVLGVVIASSSVI 265 (295)
Q Consensus 239 ---------------------~~~~y~~~~yp~W~~~~gw~l~~~~~~ 265 (295)
++.+|++|+||.|. ||.+++++++
T Consensus 451 ~~~~v~P~~l~~i~~~~~~~~~~~~y~~y~~~~~~---Gw~~~~~~~i 495 (519)
T 2a65_A 451 VMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWI---TRFYIIGLFL 495 (519)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTTHHH---HHHHHHHHHH
T ss_pred eEEehHHHHHHHHHHHHHHhCcCCCCCCccCccHH---HHHHHHHHHH
Confidence 23445567788884 9999987554
No 2
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=46.40 E-value=41 Score=32.78 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=55.7
Q ss_pred hhHhhhhHHHHHHHHHHHHH---hCCCccccccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCccee
Q psy5257 89 CTSFIAGFVIFSVLGYMAHI---SGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAII 165 (295)
Q Consensus 89 ~~Sllag~~vf~~lG~~a~~---~~~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~iv 165 (295)
++--+.+++=|++.|--|-. .|.++ ..++++. .++-+.++++|.+.+.++++.++++.-=++|.=|..-++
T Consensus 363 ~vPsl~~~~WfsvfGg~ai~~~~~g~~~--~~~~~~~---~alf~~l~~lP~~~i~~~l~iili~~FfvTSaDS~s~vl- 436 (539)
T 4ain_A 363 LVPAGVSTVWFSIFGGTAIVFEQNGESI--WGDGAAE---EQLFGLLHALPGGQIMGIIAMILLGTFFITSADSASTVM- 436 (539)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CTTSCHH---HHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTTHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHhccch--hhcCCHh---hHHHHHHHHCchHHHHHHHHHHHHHHHHHHccchHHHHH-
Confidence 33334445556666654432 22221 1122332 245678899999999988877666544444433322211
Q ss_pred hhhh---hccCCCCCchhhhhHHHHHHHHHhhcccccccccccccchhHHhhhhHHHHH
Q psy5257 166 TALS---DEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIA 221 (295)
Q Consensus 166 t~l~---D~f~~~~~~R~~~~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~ 221 (295)
+.+. |+-| .++.++.+.+.. -++++.+...+|..-++-++..+.-..+|+.
T Consensus 437 ~~~ss~g~~~p---~~~~rifWgv~~--g~va~~LL~~GG~~~L~aLQt~~ii~alPf~ 490 (539)
T 4ain_A 437 GTMSQHGQLEA---NKWVTAAWGVAT--AAIGLTLLLSGGDNALSNLQNVTIVAATPFL 490 (539)
T ss_dssp HHHHTTTCSSC---CHHHHHHHHHHH--HHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCC---CcchhhHHHHHH--HHHHHHHHHhCCHHHHHHHHhhHHHHHhHHH
Confidence 1122 1112 234455444333 3333333334564445556655544444443
No 3
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=31.53 E-value=1.7e+02 Score=27.79 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=29.6
Q ss_pred ehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhc
Q psy5257 127 VYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDE 171 (295)
Q Consensus 127 ~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~ 171 (295)
++|.....+| +....++...++-+.++|.-+.+-...+.+.+.
T Consensus 309 ~~p~l~~~lp--~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~D 351 (530)
T 3dh4_A 309 AYPWLTQFLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMD 351 (530)
T ss_dssp HHHHHHTTCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Confidence 5787776555 666777777777777777777777666665543
No 4
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=22.51 E-value=1e+02 Score=29.73 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=37.6
Q ss_pred hhhhhhhhHhhhhHHHHHHHHHHHHHh---C-CCcccc-ccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhcc
Q psy5257 83 TSLINSCTSFIAGFVIFSVLGYMAHIS---G-VPINEV-AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDS 156 (295)
Q Consensus 83 v~~~n~~~Sllag~~vf~~lG~~a~~~---~-~~~~~v-~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S 156 (295)
..+...++--+.++.=|++.|--|-.. | .++.+. .++|+. .++-+.++++|.+.+.++++.++++..=++|
T Consensus 352 fi~gvl~vPs~~~~~WfsvfGg~ai~~~~~g~~~l~~~~~~~~~~---~alf~~l~~lP~~~i~~~l~iil~~~FfvTS 427 (509)
T 2wsw_A 352 LCLGMVSGLTAGTWLIWTILGGNTLQLIDQNILNIPQLIDQYGVP---RAIIETWAALPLSTATMWGFFILCFIATVTL 427 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHCHH---HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHhHHHHHHHHhCCccHHHHHhccChh---hHHHHHHHHCChHHHHHHHHHHHHHHHHHHc
Confidence 334444444444555677777655322 2 122221 122332 2455678899999998887776554433333
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=14.53 E-value=43 Score=32.42 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=9.1
Q ss_pred cEEEeehHHHHhcCCCchhHH
Q psy5257 122 GLVFIVYPAAIATMPGSIFWS 142 (295)
Q Consensus 122 gL~Fi~~P~a~~~mp~~~~ws 142 (295)
|+.|.-.|+ ++++--++.|.
T Consensus 226 Gl~~~~~Pd-~s~L~~~~vw~ 245 (519)
T 2a65_A 226 GLNFLWTPD-FEKLKDPGVWI 245 (519)
T ss_dssp HHHHHHSCC-TTSTTCHHHHH
T ss_pred HHHHHhcCC-HHHhCCHHHHH
Confidence 444444444 44443345554
No 6
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=14.14 E-value=2.6e+02 Score=24.43 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcccccccccccccchhHHhh-hhHHHHHHHHHHHhhhhhhc
Q psy5257 185 CLFSLYFVVGLASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIAFIIVYG 234 (295)
Q Consensus 185 ~~~~~~fllgl~~~t~~G~y~~~l~D~~~~-~~~l~~~~l~e~i~~~~i~~ 234 (295)
+++...++..+--....-.| ..++|.|.. .+.+.+.+++|.+++..+..
T Consensus 236 lL~~t~~~~~~~~~lP~~s~-vp~i~~~~~~~~~~v~~sll~~v~v~~l~~ 285 (321)
T 3tlw_A 236 LIAHIAFNILVETCLPKTPY-MTYTGAIIFMIYLFYFVAVIEVTVQHYLKV 285 (321)
T ss_dssp HHHHHHHHHHHCCCCCCCSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCccc-cHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 34444444444322333345 688998876 47788888888877666553
No 7
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=12.46 E-value=1.2e+02 Score=17.42 Aligned_cols=12 Identities=8% Similarity=0.517 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q psy5257 48 MALCLLAVYLIC 59 (295)
Q Consensus 48 l~~~l~~~W~iv 59 (295)
+++|+++.|++|
T Consensus 15 vLI~vlLi~llV 26 (31)
T 1jdm_A 15 VLITVILMWLLV 26 (31)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 467888888875
No 8
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=9.02 E-value=2.9e+02 Score=16.10 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=10.0
Q ss_pred HHHHHHhhccccc
Q psy5257 57 LICYFSMWKGIST 69 (295)
Q Consensus 57 ~iv~~~i~kGi~~ 69 (295)
...|.++.||||-
T Consensus 19 ~~lfiGL~K~IkL 31 (32)
T 1q90_L 19 LGIYLGLLKVVKL 31 (32)
T ss_dssp HHHHHHHHTTSCC
T ss_pred HHHHHHHhccccc
Confidence 3468899999873
No 9
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=8.52 E-value=3e+02 Score=16.84 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=15.2
Q ss_pred ehhhhhhhhHhhhhHHHHHH
Q psy5257 82 LTSLINSCTSFIAGFVIFSV 101 (295)
Q Consensus 82 ~v~~~n~~~Sllag~~vf~~ 101 (295)
.-++.|.+-|+++|-++..+
T Consensus 3 TpSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 3 TPSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 34678999999998876554
No 10
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=6.78 E-value=9.7e+02 Score=22.23 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=28.8
Q ss_pred HHHHH-HHHHHhhhccCC-CCCcceehhhhhccCCCCCchhhhhHHHHHHHHHhh
Q psy5257 142 SLIFF-MMLLTLGLDSSF-GGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVG 194 (295)
Q Consensus 142 s~lFF-~~l~~~gl~S~i-~~lE~ivt~l~D~f~~~~~~R~~~~~~~~~~~fllg 194 (295)
+.+.. +.+.+.-+++.. +.+.+....++..+|+. .+|++.+.+++++..++.
T Consensus 298 ~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~-i~~~~~~~i~~vi~~~i~ 351 (501)
T 2jln_A 298 MAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRV-FTFKTGVIVSAVVGLLMM 351 (501)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTT-CCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccc-cchhHHHHHHHHHHHHHH
Confidence 44444 445555556665 35666666777766621 256666665555555443
Done!