RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5257
         (295 letters)



>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
           protein, transport protein; HET: BOG; 1.65A {Aquifex
           aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
           2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
           3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
           3uso_A 3usp_A* 3qs5_A* ...
          Length = 519

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 9/157 (5%)

Query: 80  AILTSLINSCTSFIAGFVI--FSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPG 137
            +  + +N     I G  I   + + +    + V I +       L FI  PA  +   G
Sbjct: 279 GLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAG--AFNLGFITLPAIFSQTAG 336

Query: 138 SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLAS 197
             F   ++F +L   GL SS    + +I  L DE      +R+  +    ++ F      
Sbjct: 337 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL---KLSRKHAVLWTAAIVFFSAHLV 393

Query: 198 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG 234
                      +D +A    ++   L E I F  ++G
Sbjct: 394 M--FLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG 428


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.014
 Identities = 36/228 (15%), Positives = 66/228 (28%), Gaps = 87/228 (38%)

Query: 5   LSASSNDTKAPVFASAAG-----EYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLIC 59
           L  +  +  A + A   G     +YF     E++    L+                    
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFE----ELRD---LYQT------------------ 179

Query: 60  YFSMWKG-ISTSGKVRKGNEDAILTSLINSCTS----FIAGFVIFSVL---------GYM 105
           Y  +    I  S +         L+ LI +       F  G  I   L          Y+
Sbjct: 180 YHVLVGDLIKFSAET--------LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231

Query: 106 AH--ISGVPINEVAVEGPGLV----FIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFG 159
               IS  P+        G++    ++V    +   PG +   L             + G
Sbjct: 232 LSIPIS-CPLI-------GVIQLAHYVVTAKLLGFTPGELRSYL-----------KGATG 272

Query: 160 GSEAIITAL----SDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGF 203
            S+ ++TA+    +D +     +    I  LF     +G+       +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFF----IGVRC--YEAY 314



 Score = 27.7 bits (61), Expect = 5.4
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 28/110 (25%)

Query: 3   GNLSASSNDTKAPVFASAAGEYFSRYILEMQHSTG--LHDL------GYIKWDMALCLLA 54
            N+S ++ D + PV+ +  G        +++  +G     +        +KW+      A
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGS-------DLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498

Query: 55  VYLICYFSMWKG---ISTSGKVRKGNEDA-----ILTSLINSCTSFIAGF 96
            +++ +     G    S  G +   N+D      I+   ++       GF
Sbjct: 499 THILDF-----GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.1 bits (72), Expect = 0.25
 Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 19/75 (25%)

Query: 112 PINEVAVEGPG------LVFIVY--PAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEA 163
           P   V ++G        +   V         M   IFW        L L   +S    E 
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--------LNLKNCNS---PET 197

Query: 164 IITALSDEFPLIGNN 178
           ++  L      I  N
Sbjct: 198 VLEMLQKLLYQIDPN 212


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 27.9 bits (62), Expect = 4.6
 Identities = 5/14 (35%), Positives = 6/14 (42%)

Query: 159  GGSEAIITALSDEF 172
            GG +      S EF
Sbjct: 1131 GGYDDFQEEGSFEF 1144


>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
          phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
          PDB: 2j86_A 2y09_A 2xzv_A
          Length = 240

 Score = 26.8 bits (60), Expect = 7.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 71 GKVRKGNEDAILTS 84
          G +RK N+DA    
Sbjct: 10 GLIRKSNQDAFYID 23


>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
          protein; 2.65A {Streptococcus agalactiae}
          Length = 250

 Score = 26.8 bits (60), Expect = 8.6
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 66 GISTSGKVRKGNEDAILTS 84
           ++  G+ R  N+D I   
Sbjct: 10 LLTDIGQRRSNNQDFINQF 28


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,477,709
Number of extensions: 269026
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 19
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.9 bits)