RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5257
         (295 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 74.1 bits (181), Expect = 2e-15
 Identities = 37/267 (13%), Positives = 73/267 (27%), Gaps = 47/267 (17%)

Query: 43  YIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVL 102
            +       +     + + ++    S   K +      +  + +N     I G  I    
Sbjct: 238 GVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPA 297

Query: 103 GYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSE 162
                     +         L FI  PA  +   G  F   ++F +L   GL SS    +
Sbjct: 298 AVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQ 357

Query: 163 AIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAV 222
            +I  L DE  L   +  ++ A +                      +D +A    ++   
Sbjct: 358 PMIAFLEDELKLSRKHAVLWTAAIVFFSA-----HLVMFLNKSLDEMDFWAGTIGVVFFG 412

Query: 223 LFESIAF---------------------------------------IIVYGLTTYEPLSY 243
           L E I F                                       ++V     Y P   
Sbjct: 413 LTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIM 472

Query: 244 ESYVYPQWAN---VLGVVIASSSVIMI 267
           E   +  W     ++G+ +  + ++ +
Sbjct: 473 EETHWTVWITRFYIIGLFLFLTFLVFL 499


>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
          pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 27.6 bits (60), Expect = 1.8
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 64 WKGISTSGKVRKGNEDAILTS 84
          +   S  G VR  NED++   
Sbjct: 5  YAARSDRGLVRANNEDSVYAG 25


>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 654

 Score = 25.9 bits (56), Expect = 6.6
 Identities = 6/13 (46%), Positives = 6/13 (46%)

Query: 204 YFFHLLDKYAAGY 216
            F HL   Y A Y
Sbjct: 574 TFGHLAGGYDAQY 586


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,066,864
Number of extensions: 48030
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 11
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)