Query psy5258
Match_columns 252
No_of_seqs 196 out of 1667
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 21:48:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3660|consensus 100.0 1.7E-48 3.8E-53 379.3 15.4 229 1-229 319-590 (629)
2 KOG3659|consensus 100.0 8.7E-42 1.9E-46 323.8 11.4 221 1-221 357-622 (629)
3 PF00209 SNF: Sodium:neurotran 100.0 1.2E-39 2.5E-44 314.9 -0.6 201 2-202 284-523 (523)
4 COG0733 Na+-dependent transpor 99.9 3.5E-27 7.6E-32 219.9 8.4 174 2-186 249-424 (439)
5 PF10624 TraS: Plasmid conjuga 56.9 35 0.00077 27.5 5.6 76 139-215 29-111 (164)
6 KOG1289|consensus 45.7 2.2E+02 0.0047 28.4 10.2 151 34-193 312-479 (550)
7 PRK00701 manganese transport p 44.7 1.7E+02 0.0036 28.1 9.3 24 61-84 304-327 (439)
8 COG1914 MntH Mn2+ and Fe2+ tra 43.8 2.8E+02 0.0061 26.6 10.5 37 61-97 282-318 (416)
9 PF05525 Branch_AA_trans: Bran 37.0 1.1E+02 0.0023 29.5 6.6 57 61-119 271-327 (427)
10 PF02028 BCCT: BCCT family tra 35.3 1.1E+02 0.0024 29.9 6.5 79 9-90 337-419 (485)
11 PF13334 DUF4094: Domain of un 26.2 49 0.0011 24.9 1.9 18 106-123 4-21 (95)
12 PRK15433 branched-chain amino 24.9 2.2E+02 0.0047 27.6 6.4 63 53-118 267-329 (439)
13 PRK03356 L-carnitine/gamma-but 22.6 4E+02 0.0086 26.2 7.9 39 50-88 392-430 (504)
14 PRK09950 putative transporter; 21.5 5.4E+02 0.012 25.4 8.5 41 49-89 388-428 (506)
15 PF12273 RCR: Chitin synthesis 20.1 64 0.0014 25.3 1.6 33 181-217 2-34 (130)
No 1
>KOG3660|consensus
Probab=100.00 E-value=1.7e-48 Score=379.25 Aligned_cols=229 Identities=45% Similarity=0.799 Sum_probs=218.3
Q ss_pred CCceEEeHhHHHHHHHHHHHHHHHHhhHHHHhhCC-CcccccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhh
Q psy5258 1 MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGV-PINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLD 79 (252)
Q Consensus 1 ~rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~~g~-~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~ 79 (252)
.||+.++++.|+.+|+++|+++||++||||++.|+ ++++++++|+||+|++||+++++||.+++|+.|||+|++++|++
T Consensus 319 yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~ 398 (629)
T KOG3660|consen 319 YRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLD 398 (629)
T ss_pred eeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHHhhceeEEee
Q psy5258 80 SSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGL 159 (252)
Q Consensus 80 S~i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~i~~~ 159 (252)
|+++++|.++|++.|+||+.|++|+.+++.+|+++|++|++++|++|.|+++++|+|++++.+++++++|++.+.|+|+.
T Consensus 399 s~~~~ve~i~t~i~D~Fp~~~~~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i~wiYG~ 478 (629)
T KOG3660|consen 399 SQFAIVETIVTAIVDEFPRLRNRRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAIAWVYGA 478 (629)
T ss_pred hHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHHhheecc
Confidence 99999999999999999977889999999999999999999999999999999999999999999999999888888864
Q ss_pred c----------------------------------------ccccCCCC-CcccchhhhhhhhHhhhhhhHHHHHHHHHH
Q psy5258 160 T----------------------------------------TYEPLSYE-SYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198 (252)
Q Consensus 160 ~----------------------------------------~~~~l~y~-~~~~p~W~~~igw~i~~~~~l~IP~~~i~~ 198 (252)
. +|+|.+|+ .|.||.|.+.+||+++++|+++||++++++
T Consensus 479 ~~~~~di~~M~g~~~~~~~~~~~W~f~tP~~~~~i~v~s~~~~~p~~y~~~~~yP~w~~~~Gw~~a~~~~~~iP~~ai~~ 558 (629)
T KOG3660|consen 479 DRFRDDIHEMIGCGRPSPYWKLCWKFVTPILLLGILVFSLVKYYPLKYNKVYVYPPWGDIVGWLVALSPLLVIPLYAIIQ 558 (629)
T ss_pred cchHhhHHHHhCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHhccCccCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 36788899 789999999999999999999999999999
Q ss_pred HHcCCCC-HHHhhhhhcccCCCcccccccccc
Q psy5258 199 MIITPGT-FMQRLNTLLTPWRDHQTVLARSLS 229 (252)
Q Consensus 199 ~~~~~Gt-~~~r~~~~~~P~~~~~p~~~~~~~ 229 (252)
++|.+|+ .+||+|+.++|++||+|.++++++
T Consensus 559 ~~~~~~~~~~~R~~~~~~p~~~~~~~~~~~~~ 590 (629)
T KOG3660|consen 559 ILRAKGTKLKERIKFLLRPLSDWGPRDAEAPP 590 (629)
T ss_pred HHHccCCcHHHHHHHHhcCCcccCCccccccc
Confidence 9999996 999999999999999999986443
No 2
>KOG3659|consensus
Probab=100.00 E-value=8.7e-42 Score=323.83 Aligned_cols=221 Identities=53% Similarity=0.851 Sum_probs=207.3
Q ss_pred CCceEEeHhHHHHHHHHHHHHHHHHhhHHHHh---hCCCccc-ccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHH
Q psy5258 1 MPDAILTSLINSCTSFIAGFVIFSVLGYMAHI---SGVPINE-VAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTL 76 (252)
Q Consensus 1 ~rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~---~g~~~~~-v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~ 76 (252)
.|||++++.+|+.||+++|+++|+++|+||+. .+.+.++ ++.+||||+|++|||++++||.+.+|+++||+|+..+
T Consensus 357 ~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~l 436 (629)
T KOG3659|consen 357 YRDALLTSIINCLTSFLSGFVIFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTL 436 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999 7778777 6789999999999999999999999999999999999
Q ss_pred hhhcCCCCCcchhhhhhhccC-CCCCchHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHHhhcee
Q psy5258 77 GLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFII 155 (252)
Q Consensus 77 gl~S~i~~~E~ivt~l~d~f~-~~~~~R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~ 155 (252)
|++|+++.+|.++|.+.|+++ .+|++|+..++.+|+..+++|+++++.+|.|++++.|+|+.++++++.+++|++.+.|
T Consensus 437 gl~s~~g~~e~iit~l~d~~~~~l~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~Vsw 516 (629)
T KOG3659|consen 437 GLDSMFGGIEAIITPLLDEFYLSLRKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSW 516 (629)
T ss_pred hhHhhhhhHHHHhccccchhhhHhhhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999996 6789999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecc---------------------------------------cccCCCCCcccchhhhhhhhHhhhhhhHHHHHHHH
Q psy5258 156 VYGLTT---------------------------------------YEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAV 196 (252)
Q Consensus 156 i~~~~~---------------------------------------~~~l~y~~~~~p~W~~~igw~i~~~~~l~IP~~~i 196 (252)
+||..+ ++|.++..|.||+|+.++||.+.++++++||.+++
T Consensus 517 vYG~~rf~~d~~~Mlg~~P~~yw~v~w~~vsp~~ll~if~~~~~~~~~~~~~~y~yp~Wa~~l~~~i~~ss~~~ip~~~~ 596 (629)
T KOG3659|consen 517 VYGVRRFSADVKQMLGFRPGWYWRVCWPCVSPVFLLFIFVFSLRNFSPIQVVIYAYPDWALVLGWAIRASSKICIPLYAI 596 (629)
T ss_pred hhhHhHHHHHHHHHhCCCCchhHHHHHhhhhHHHHHHHHHHHHhccccceEEeecCCchHHHHHHHHHhhHHHHHhHHhh
Confidence 988653 34555567899999999999999999999999999
Q ss_pred HHHHcCCC-CHHHhhhhhcccCCCcc
Q psy5258 197 YQMIITPG-TFMQRLNTLLTPWRDHQ 221 (252)
Q Consensus 197 ~~~~~~~G-t~~~r~~~~~~P~~~~~ 221 (252)
|++++.+| +.+||+++.++|++++.
T Consensus 597 y~~~~~~~~~~~~~~~~~~~p~~~~~ 622 (629)
T KOG3659|consen 597 YKFVSRRGVSGKERLHRWITPEEGHA 622 (629)
T ss_pred heeeecCCCCchhhcccccCCCCCCc
Confidence 99999887 99999999999997665
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=100.00 E-value=1.2e-39 Score=314.88 Aligned_cols=201 Identities=46% Similarity=0.841 Sum_probs=159.0
Q ss_pred CceEEeHhHHHHHHHHHHHHHHHHhhHHHHhhCCCcccccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhhcC
Q psy5258 2 PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSS 81 (252)
Q Consensus 2 rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~~g~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~ 81 (252)
||++++++.|+++|++||+++|+++||++++.|.+++++.++||||+|+++|+++++||.+++|+++||+|++++|++|+
T Consensus 284 ~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~ 363 (523)
T PF00209_consen 284 RDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQ 363 (523)
T ss_dssp HHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhc
Confidence 68999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHHhhceeEEeecc
Q psy5258 82 FGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTT 161 (252)
Q Consensus 82 i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~i~~~~~ 161 (252)
++++|++++.+.|+++..|++|++++..+|+.++++|+|+++++|.|+++++|++.+++.+++++++|++.+.|+|+..+
T Consensus 364 i~~~E~iv~~l~d~~~~~~~~r~~~~~~v~~~~~l~gl~~~t~~G~~~~~~~d~~~~~~~l~~~~l~e~i~v~wvyG~~~ 443 (523)
T PF00209_consen 364 ISMLEVIVSALMDEFPISRKKRKKVTLIVCLVGFLLGLPFCTQGGIYIFDLLDDYVGSISLLIIALLECIAVGWVYGWDR 443 (523)
T ss_dssp HHHHHHHHHHHHHTST----HHHHHHHHHHHHHHHHHHHHHBT---THHHHHHHHTTTHHHHHHHHHHHHHHHTTSTHHH
T ss_pred CCceeceeEeeeecCccchhhccceeHHHhhhHeEeccccccccHHHhcchHhhcchhHHHHHHHHHHHHheecccccee
Confidence 99999999999999997677899999999999999999999999999999999999999999999999988888887543
Q ss_pred ---------------------------------------cccCCCCCcccchhhhhhhhHhhhhhhHHHHHHHHHHHHcC
Q psy5258 162 ---------------------------------------YEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202 (252)
Q Consensus 162 ---------------------------------------~~~l~y~~~~~p~W~~~igw~i~~~~~l~IP~~~i~~~~~~ 202 (252)
+++.+|++|.||.|+..+||++.++++++||++++|+++|+
T Consensus 444 ~~~di~~~~g~~~~~~w~~~w~~v~Pi~ll~ili~~i~~~~~~~~~~~~yp~w~~~igw~i~~~~~l~Ip~~~i~~~~~~ 523 (523)
T PF00209_consen 444 FREDINEMLGFKPGKFWKFLWKYVTPIILLVILIWSIIDYKPLSYNSYIYPWWAIAIGWLIALSPLLPIPIYAIYKICRT 523 (523)
T ss_dssp HHHHHHTT-SS---THHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSS-TTHHHHHHHH---------------------
T ss_pred hhhhhcccccccHHHHHHhhEEEeecccccceeeeeEEecCCCCCcceEEhHheEEEEEEecccccccccccccccccCC
Confidence 33445567889999999999999999999999999999974
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=99.94 E-value=3.5e-27 Score=219.90 Aligned_cols=174 Identities=28% Similarity=0.424 Sum_probs=155.1
Q ss_pred CceEEeHhHHHHHHHHHHHHHHHHhhHHHHhhCCCcccccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhhcC
Q psy5258 2 PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSS 81 (252)
Q Consensus 2 rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~~g~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~ 81 (252)
++++.+++.|+..|++||++|||.++.+. .+ +++||||+|+++|++|++||.+++++++||+.+.+||+||.
T Consensus 249 ~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g----~~----~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~ 320 (439)
T COG0733 249 SSALSIVLLNTLISLLAGLVIFPALFSFG----AD----ASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSA 320 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc----cC----CCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999997654 34 37899999999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHHhhceeEEeecc
Q psy5258 82 FGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTT 161 (252)
Q Consensus 82 i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~i~~~~~ 161 (252)
++++|++++.++|+++ .+|+++++.++.+.+++|+|+.++.|.+++|.+|+.++++.++.+++++++++.|+++..+
T Consensus 321 iSmlE~~va~l~~~~~---~~R~~a~~~~~~~~fl~gi~~~ls~g~~~fD~~D~~~s~~l~plgaL~~~i~~~w~~~~~~ 397 (439)
T COG0733 321 ISMLEVLVAALIDKFG---ISRKKATWLIGILIFLLGIPSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKEL 397 (439)
T ss_pred HHHHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999986 6899999999999999999999999999999999999999999999999999999997554
Q ss_pred c-ccCCCC-CcccchhhhhhhhHhhhh
Q psy5258 162 Y-EPLSYE-SYVYPQWANVLGVAIASS 186 (252)
Q Consensus 162 ~-~~l~y~-~~~~p~W~~~igw~i~~~ 186 (252)
. ++++-+ +....+|...++++.+..
T Consensus 398 ~~~~~~~~s~~~~~~w~~~vr~i~Pi~ 424 (439)
T COG0733 398 LREELNAGSAKLFKIWLYLVRYIAPIV 424 (439)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3 344433 345567888888876633
No 5
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=56.89 E-value=35 Score=27.54 Aligned_cols=76 Identities=12% Similarity=0.210 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhhceeEEeecccccCCCCCcc--cchhhhhhhhHhhhhhhHHHHHHHHHHHHc---CCC--CHHHhhh
Q psy5258 139 GYSILIAVLFESIAFIIVYGLTTYEPLSYESYV--YPQWANVLGVAIASSSVIMIPGMAVYQMII---TPG--TFMQRLN 211 (252)
Q Consensus 139 ~~~ll~~~l~e~l~~~~i~~~~~~~~l~y~~~~--~p~W~~~igw~i~~~~~l~IP~~~i~~~~~---~~G--t~~~r~~ 211 (252)
.+.++++++++- ++.|++.-++-++..-+.++ -..|....+.+.-++|+++.-++.++.+|. -.| +.+|-.|
T Consensus 29 ~fil~f~~lWqg-lFiwlF~qIrkKr~v~defkfsk~vwyi~mpVcsllsPllsLM~fI~gtL~~lrrvsgcisik~w~~ 107 (164)
T PF10624_consen 29 IFILLFIVLWQG-LFIWLFIQIRKKRNVSDEFKFSKGVWYILMPVCSLLSPLLSLMVFIIGTLYELRRVSGCISIKEWMQ 107 (164)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCcchhccccceEEeeecHHHHHhHHHHHHHHHHHHHHHHHHhhcceeHHHHHH
Confidence 356667777764 45677655544433333333 457888888888888888887777777763 334 5555444
Q ss_pred hhcc
Q psy5258 212 TLLT 215 (252)
Q Consensus 212 ~~~~ 215 (252)
....
T Consensus 108 ~q~~ 111 (164)
T PF10624_consen 108 SQVN 111 (164)
T ss_pred HHHh
Confidence 4443
No 6
>KOG1289|consensus
Probab=45.75 E-value=2.2e+02 Score=28.36 Aligned_cols=151 Identities=15% Similarity=0.225 Sum_probs=74.8
Q ss_pred CCCcccccccCCceEeeh-hHHHHhcCCChhHHHHHHHHHHHHHhhhcCCCCCcchhhhhhhc-cCCCC---------Cc
Q psy5258 34 GVPINEVAVEGPGLVFIV-YPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDE-FPLIG---------NN 102 (252)
Q Consensus 34 g~~~~~v~~~G~gL~Fi~-~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~i~~~E~ivt~l~d~-f~~~~---------~~ 102 (252)
+.|.+.+..+.-|.-++. |-+++.+= +.-....+-.+.+++-|++|..+.--.+-+.-.|. .|..| +.
T Consensus 312 ~~D~~~v~ns~~g~p~~~i~~~~lg~k-~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~ 390 (550)
T KOG1289|consen 312 PDDLDAVLNSSLGQPIVQIYYQALGKK-GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKV 390 (550)
T ss_pred cchHHHHhcCCCCChHHHHHHHhcCCC-ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCC
Confidence 335555666665555543 22333221 22234444455666677777766544444444554 23211 12
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHH----hhceeEEeecccccCC--CCCcccchhh
Q psy5258 103 REIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFES----IAFIIVYGLTTYEPLS--YESYVYPQWA 176 (252)
Q Consensus 103 R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~----l~~~~i~~~~~~~~l~--y~~~~~p~W~ 176 (252)
...++++.|++..++|+...-.. .-+|.. ++.-.++++-. ++.-..+++.+++|-. .+++..|.=.
T Consensus 391 P~nAv~l~~i~s~llgll~L~s~-----~Af~Al---fs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk~s~p~~~ 462 (550)
T KOG1289|consen 391 PLNAVLLSCIISILLGLLILASA-----TAFNAL---FSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGKFSKPIGI 462 (550)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhH-----HHHHHH---HHHHHHHHHHHHHHhHHhheeecccccCCCCccccccccchHH
Confidence 34567788888888887654211 111111 12222222221 3333445555566433 3344445444
Q ss_pred hhhhhHhhhhhhHHHHH
Q psy5258 177 NVLGVAIASSSVIMIPG 193 (252)
Q Consensus 177 ~~igw~i~~~~~l~IP~ 193 (252)
..+.|.+.+.++++.|-
T Consensus 463 i~v~w~lf~~vil~fP~ 479 (550)
T KOG1289|consen 463 IAVLWVLFMIVILCFPS 479 (550)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 55888888777777663
No 7
>PRK00701 manganese transport protein MntH; Reviewed
Probab=44.69 E-value=1.7e+02 Score=28.11 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=17.9
Q ss_pred ChhHHHHHHHHHHHHHhhhcCCCC
Q psy5258 61 GSIFWSLIFFMMLLTLGLDSSFGG 84 (252)
Q Consensus 61 ~~~~wa~lFF~~l~~~gl~S~i~~ 84 (252)
.|+.-..+|-+-++.+|++|.+..
T Consensus 304 ~G~~a~~lFaiGL~aag~sS~i~~ 327 (439)
T PRK00701 304 LGAAAATLFGIALLASGLSSTVVG 327 (439)
T ss_pred HhHHHHHHHHHHHHHhHhHHHhHH
Confidence 456666777777888999987763
No 8
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=43.81 E-value=2.8e+02 Score=26.56 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHHHHhhhcCCCCCcchhhhhhhccC
Q psy5258 61 GSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP 97 (252)
Q Consensus 61 ~~~~wa~lFF~~l~~~gl~S~i~~~E~ivt~l~d~f~ 97 (252)
.++.-..+|=..++.+|++|....-..-...+++..+
T Consensus 282 ~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~ 318 (416)
T COG1914 282 LGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLN 318 (416)
T ss_pred hhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhc
Confidence 3566777787888889999887765555555555444
No 9
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=37.02 E-value=1.1e+02 Score=29.51 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=43.2
Q ss_pred ChhHHHHHHHHHHHHHhhhcCCCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhh
Q psy5258 61 GSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGL 119 (252)
Q Consensus 61 ~~~~wa~lFF~~l~~~gl~S~i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl 119 (252)
.|+.-.+++=..++++-+++.++++-.......|.+| |.+.+..+.+.|++.++++.
T Consensus 271 ~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~--kisY~~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 271 FGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP--KISYKVWVIIFTIFSFIIAN 327 (427)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccChHHHHHHHHHHHHHHHH
Confidence 4566667777778888899999988888888888887 45666667777877777543
No 10
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=35.32 E-value=1.1e+02 Score=29.85 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHh---hC-CCcccccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhhcCCCC
Q psy5258 9 LINSCTSFIAGFVIFSVLGYMAHI---SG-VPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGG 84 (252)
Q Consensus 9 ~~n~~~Si~ag~~iFs~lG~~a~~---~g-~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~i~~ 84 (252)
+.+...--+.+++-|++.|--+-. .| .++.+..++|++ .+.-+.++++|.+++...++.++++..=.||.=+.
T Consensus 337 l~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~---~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~ 413 (485)
T PF02028_consen 337 LGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPE---AALFAFLEQLPLSKILSILFLILIFIFFVTSADSA 413 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HH---HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchh---hHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 344445555566667777644332 22 233333455554 23456789999999999888887776655554444
Q ss_pred Ccchhh
Q psy5258 85 SEAIIT 90 (252)
Q Consensus 85 ~E~ivt 90 (252)
..++-+
T Consensus 414 ~~~la~ 419 (485)
T PF02028_consen 414 TYVLAM 419 (485)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 11
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=26.21 E-value=49 Score=24.92 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhcccc
Q psy5258 106 FIACLFSLYFVVGLASCA 123 (252)
Q Consensus 106 ~~~~~c~~~fllgl~~~t 123 (252)
.++++|+.+|++|+.++.
T Consensus 4 w~l~Lc~~SF~~G~lft~ 21 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTN 21 (95)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 367899999999998764
No 12
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=24.85 E-value=2.2e+02 Score=27.59 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=41.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhhcCCCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhh
Q psy5258 53 PAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVG 118 (252)
Q Consensus 53 P~a~~~mp~~~~wa~lFF~~l~~~gl~S~i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllg 118 (252)
|....+--.++.-..++=+.++++-+++.++++-+..+.+.+.++ .+.+..+.+.|+++++++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---LSYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHHHHHHH
Confidence 434443345666666667777778888888887777777666554 456666777777777654
No 13
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=22.59 E-value=4e+02 Score=26.25 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=27.7
Q ss_pred ehhHHHHhcCCChhHHHHHHHHHHHHHhhhcCCCCCcch
Q psy5258 50 IVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAI 88 (252)
Q Consensus 50 i~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~i~~~E~i 88 (252)
.+.-+.++++|.+.+.++++.++++.-=+||.=+...++
T Consensus 392 ~alf~~l~~lPl~~i~~~l~~il~~if~vTsaDS~t~vl 430 (504)
T PRK03356 392 RAIIETWAALPLSTATMWGFFILCFIATVTLINACSYTL 430 (504)
T ss_pred hHHHHHHHHCcHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455678999999999998888877765555554443333
No 14
>PRK09950 putative transporter; Provisional
Probab=21.48 E-value=5.4e+02 Score=25.36 Aligned_cols=41 Identities=2% Similarity=0.074 Sum_probs=29.5
Q ss_pred eehhHHHHhcCCChhHHHHHHHHHHHHHhhhcCCCCCcchh
Q psy5258 49 FIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAII 89 (252)
Q Consensus 49 Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~i~~~E~iv 89 (252)
-.+.-+.++++|.+.+.+.++.+.++..=.||.=+..-++-
T Consensus 388 ~~a~~~~l~~lP~~~i~~~l~~vl~~if~vTs~DS~s~vla 428 (506)
T PRK09950 388 ETAVQQLLSSLPAGKLFLAAYLGIMIIFLASHMDAVAYTMA 428 (506)
T ss_pred chHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34566789999999999999888777766666555444333
No 15
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.12 E-value=64 Score=25.33 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=15.0
Q ss_pred hHhhhhhhHHHHHHHHHHHHcCCCCHHHhhhhhcccC
Q psy5258 181 VAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPW 217 (252)
Q Consensus 181 w~i~~~~~l~IP~~~i~~~~~~~Gt~~~r~~~~~~P~ 217 (252)
|++.++-+++|-++++...|+. ++|.|+-.+|.
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~----rRR~r~G~~P~ 34 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHN----RRRRRRGLQPI 34 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHH----HHHhhcCCCCc
Confidence 4444443444444444444432 24555555564
Done!