Query psy5258
Match_columns 252
No_of_seqs 196 out of 1667
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 21:48:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 2.4E-36 8.3E-41 289.5 0.1 177 2-189 277-495 (519)
2 3dh4_A Sodium/glucose cotransp 17.6 2.8E+02 0.0097 25.5 7.1 42 51-94 309-350 (530)
3 3arc_X Photosystem II PSBX pro 16.8 1.4E+02 0.0048 17.9 3.1 18 8-25 5-22 (39)
4 4ain_A Glycine betaine transpo 13.0 7.1E+02 0.024 23.4 8.5 33 51-83 399-431 (539)
5 3bz1_X Photosystem II PSBX pro 11.3 2.3E+02 0.0079 17.9 3.1 19 7-25 14-32 (50)
6 3iyz_A Aquaporin-4; water tran 11.3 2.8E+02 0.0096 24.6 4.8 27 191-217 259-286 (340)
7 1emz_A Envelope glycoprotein E 8.5 2.8E+02 0.0097 15.1 2.4 16 16-31 6-21 (26)
8 3arc_I Photosystem II reaction 7.6 2.4E+02 0.0083 16.7 2.0 15 66-80 11-25 (38)
9 2eq9_C Pyruvate dehydrogenase 6.8 2.5E+02 0.0086 16.1 1.9 19 28-46 9-27 (41)
10 2eq8_C Pyruvate dehydrogenase 6.7 2.5E+02 0.0087 15.9 1.8 19 28-46 8-26 (40)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=100.00 E-value=2.4e-36 Score=289.46 Aligned_cols=177 Identities=21% Similarity=0.291 Sum_probs=159.4
Q ss_pred CceEEeHhHHHHHHHHHHHHHHHHhhHHHHhhCCC-cccccccC-CceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhh
Q psy5258 2 PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVP-INEVAVEG-PGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLD 79 (252)
Q Consensus 2 rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~~g~~-~~~v~~~G-~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~ 79 (252)
||++++++.|+.+|++||++||+.+||++ +|.+ +++++++| |||+|++||+++++||++++|+++||+|++++|+|
T Consensus 277 ~~a~~v~~~n~~~sllaG~~IF~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~aglt 354 (519)
T 2a65_A 277 LSGLTAATLNEKAEVILGGSISIPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLT 354 (519)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 78999999999999999999999999997 5777 77778899 99999999999999999999999999999999999
Q ss_pred cCCCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhhcccccc-ccccccchhhhhhhhHHHHHHHHHHhhceeEEe
Q psy5258 80 SSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQG-GFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG 158 (252)
Q Consensus 80 S~i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl~~~t~~-G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~i~~ 158 (252)
|+++++|++++.++|+++ ++|++++..+|++++++|+|++|++ | +|++|++++++.+++++++|++.+.|+|+
T Consensus 355 S~i~~~E~~vt~l~D~~~---~~R~~~~~~v~~~~fllgl~~~~~~~g---~~~~D~~~~~~~l~~~~l~~~i~v~wv~g 428 (519)
T 2a65_A 355 SSIAIMQPMIAFLEDELK---LSRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFG 428 (519)
T ss_dssp HHHHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhHhHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHcCCCC---cchHHHHHhHHHHHHHHHHHHHhhheeee
Confidence 999999999999999986 5899999999999999999999998 7 99999999999999999999988888887
Q ss_pred ecc---------------------------------------cccCCCCCcccchhhhhhhhHhhhhhhH
Q psy5258 159 LTT---------------------------------------YEPLSYESYVYPQWANVLGVAIASSSVI 189 (252)
Q Consensus 159 ~~~---------------------------------------~~~l~y~~~~~p~W~~~igw~i~~~~~l 189 (252)
..+ +.|.+|++|.||.|. ||++.+++++
T Consensus 429 ~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~~~~~~y~~y~~~~~~---Gw~~~~~~~i 495 (519)
T 2a65_A 429 ADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWI---TRFYIIGLFL 495 (519)
T ss_dssp HHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTTHHH---HHHHHHHHHH
T ss_pred hhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHHHHHHHHhCcCCCCCCccCccHH---HHHHHHHHHH
Confidence 543 234455567788884 9988877444
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=17.61 E-value=2.8e+02 Score=25.54 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=28.8
Q ss_pred hhHHHHhcCCChhHHHHHHHHHHHHHhhhcCCCCCcchhhhhhh
Q psy5258 51 VYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 94 (252)
Q Consensus 51 ~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~i~~~E~ivt~l~d 94 (252)
++|.....+| +....++...++.+.++|.-+.+-...+.+.+
T Consensus 309 ~~p~l~~~lp--~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~ 350 (530)
T 3dh4_A 309 AYPWLTQFLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTM 350 (530)
T ss_dssp HHHHHHTTCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 5788776555 55677777777777777766666666666543
No 3
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=16.83 E-value=1.4e+02 Score=17.94 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=14.3
Q ss_pred HhHHHHHHHHHHHHHHHH
Q psy5258 8 SLINSCTSFIAGFVIFSV 25 (252)
Q Consensus 8 ~~~n~~~Si~ag~~iFs~ 25 (252)
++.|.+-|+++|-+|..+
T Consensus 5 SL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 5 SLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567999999998876654
No 4
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=13.04 E-value=7.1e+02 Score=23.42 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=23.9
Q ss_pred hhHHHHhcCCChhHHHHHHHHHHHHHhhhcCCC
Q psy5258 51 VYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFG 83 (252)
Q Consensus 51 ~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~i~ 83 (252)
++=+.+.++|.+.+.++++.++++.-=+||.=+
T Consensus 399 alf~~l~~lP~~~i~~~l~iili~~FfvTSaDS 431 (539)
T 4ain_A 399 QLFGLLHALPGGQIMGIIAMILLGTFFITSADS 431 (539)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHCchHHHHHHHHHHHHHHHHHHccch
Confidence 556788999999999988877666544554433
No 5
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=11.33 E-value=2.3e+02 Score=17.90 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.6
Q ss_pred eHhHHHHHHHHHHHHHHHH
Q psy5258 7 TSLINSCTSFIAGFVIFSV 25 (252)
Q Consensus 7 i~~~n~~~Si~ag~~iFs~ 25 (252)
=.+-|.+.|+++|-+|..+
T Consensus 14 pSL~NFl~SlvaG~vVvv~ 32 (50)
T 3bz1_X 14 PSLKGFFIGLLSGAVVLGL 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578999999998876544
No 6
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=11.30 E-value=2.8e+02 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCC-CHHHhhhhhcccC
Q psy5258 191 IPGMAVYQMIITPG-TFMQRLNTLLTPW 217 (252)
Q Consensus 191 IP~~~i~~~~~~~G-t~~~r~~~~~~P~ 217 (252)
+-...+|++...++ +..+|+|..++..
T Consensus 259 ilaallY~~l~~p~~~~~~r~~~~~~~~ 286 (340)
T 3iyz_A 259 VLAGALYEYVFCPDVELKRRLKEAFSKA 286 (340)
T ss_pred HHHHHHHHHHhCCChhhhHHHHHhhcCc
Confidence 34456788777666 5678888776443
No 7
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=8.51 E-value=2.8e+02 Score=15.06 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhHHHH
Q psy5258 16 FIAGFVIFSVLGYMAH 31 (252)
Q Consensus 16 i~ag~~iFs~lG~~a~ 31 (252)
+++|++.||..|..|.
T Consensus 6 vl~glayfsm~gnWaK 21 (26)
T 1emz_A 6 VLAGIAYFSMVGNWAK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHhhHHhh
Confidence 5788999999987764
No 8
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=7.63 E-value=2.4e+02 Score=16.70 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhc
Q psy5258 66 SLIFFMMLLTLGLDS 80 (252)
Q Consensus 66 a~lFF~~l~~~gl~S 80 (252)
-++||..++.-|.-|
T Consensus 11 vV~ffvsLFiFGfLs 25 (38)
T 3arc_I 11 VVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccC
Confidence 467899999988866
No 9
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=6.82 E-value=2.5e+02 Score=16.08 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=14.2
Q ss_pred HHHHhhCCCcccccccCCc
Q psy5258 28 YMAHISGVPINEVAVEGPG 46 (252)
Q Consensus 28 ~~a~~~g~~~~~v~~~G~g 46 (252)
-+|.+.|++++.+..+|++
T Consensus 9 ~la~e~gidl~~v~gtG~~ 27 (41)
T 2eq9_C 9 KLARELGIPIEEVPGSGPL 27 (41)
T ss_dssp HHHHHTTCCGGGSCCCSTT
T ss_pred HHHHHcCCChhhcCCCCCC
Confidence 4677889998887767764
No 10
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=6.75 E-value=2.5e+02 Score=15.95 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHhhCCCcccccccCCc
Q psy5258 28 YMAHISGVPINEVAVEGPG 46 (252)
Q Consensus 28 ~~a~~~g~~~~~v~~~G~g 46 (252)
-+|.+.|++++++..+|++
T Consensus 8 ~la~e~gidl~~v~gtG~~ 26 (40)
T 2eq8_C 8 RLARELGVDLTRLRGTGLA 26 (40)
T ss_dssp HHHHHHTCCGGGCCCCSTT
T ss_pred HHHHHhCCChhhcCCCCCC
Confidence 3567889998887767763
Done!