RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5258
(252 letters)
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 329 bits (845), Expect = e-111
Identities = 149/254 (58%), Positives = 180/254 (70%), Gaps = 39/254 (15%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
DA++TS IN TSF++GFVIFSVLGYMA SG PI +VA EGPGLVF+VYP A++TMPGS
Sbjct: 299 DALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEGPGLVFVVYPEALSTMPGS 358
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
FWSL+FF+ML+TLGLDSSFGGSEAIITALSDEFP+I +RE+F+ CLF+ YFV+GLA C
Sbjct: 359 TFWSLLFFLMLMTLGLDSSFGGSEAIITALSDEFPIIKRHRELFVGCLFAFYFVIGLAMC 418
Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
QGG YFFHLLD+YAAGYSILIAVLFE++A
Sbjct: 419 TQGGIYFFHLLDRYAAGYSILIAVLFEAVAVSWIYGLDRFCQDIKEMLGFRPGIYWKICW 478
Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
F I YGL Y+PL+Y+ Y YP WANVLG A SS+ MIP +A+YQ++ TP
Sbjct: 479 KFIAPIFLLFNITYGLINYQPLTYDDYTYPTWANVLGWIFAGSSISMIPIVAIYQILNTP 538
Query: 204 GTFMQRLNTLLTPW 217
GTF++R L+TP
Sbjct: 539 GTFIERKKKLVTPP 552
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 288 bits (740), Expect = 4e-95
Identities = 124/255 (48%), Positives = 161/255 (63%), Gaps = 40/255 (15%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
DA++TS IN TSF +GFVIFSVLGYMAH V I VA EGPGLVFIVYP AIAT+PGS
Sbjct: 285 DALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEVVATEGPGLVFIVYPEAIATLPGS 344
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
FW++IFF+ML+TLGLDS+FGG EA+IT L DEFP ++G RE+F+ + + F++ L +
Sbjct: 345 TFWAIIFFLMLITLGLDSTFGGLEAVITGLCDEFPPVLGKRRELFVLGVVIICFLLALPT 404
Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 152
GG Y LLD+YAAG SIL V E++A
Sbjct: 405 VTYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYGVDRFSDDIEEMLGFRPGLYWRVC 464
Query: 153 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
FI+++ L +YEPL Y+ YVYP W+ V+G I SS++ IP A+Y++IIT
Sbjct: 465 WKFISPIFLLFIVIFSLVSYEPLQYQDYVYPYWSTVVGWCITCSSIVCIPIYAIYKLIIT 524
Query: 203 PGTFMQRLNTLLTPW 217
PGTF +R+ L+TP
Sbjct: 525 PGTFKERIVYLITPE 539
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 238 bits (609), Expect = 1e-75
Identities = 105/258 (40%), Positives = 141/258 (54%), Gaps = 44/258 (17%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
D+I+ +NS TSF AGF IFS+LG+MA GVPI+EVA GPGL FI YP A++ +P
Sbjct: 286 DSIILCFLNSGTSFFAGFAIFSILGFMAQEQGVPISEVAESGPGLAFIAYPRAVSLLPLP 345
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
W+++FF+MLL LGLDS F G E +TA+ D +P + REIF+A + + F++GL
Sbjct: 346 QLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDLYPNVLRLRYRREIFVAIVCLVCFLIGL 405
Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIA-------------------------- 152
+GG Y F L D YAA G +L FE IA
Sbjct: 406 PMVTEGGIYVFQLFDYYAASGICLLWLAFFECIAISWVYGADRFYDNIEDMIGYRPGPWW 465
Query: 153 -------------FIIVYGLTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
I V+ L Y PL+Y +YVYP WA +G +A SS++ IPG A+Y
Sbjct: 466 KYCWKFLTPAICLGIFVFSLVKYTPLTYGNTYVYPWWAEAIGWFLALSSMLCIPGYAIYI 525
Query: 199 MIITPGTFMQRLNTLLTP 216
++ TPG+ +RL L TP
Sbjct: 526 LLKTPGSLKERLRKLTTP 543
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 232 bits (595), Expect = 8e-74
Identities = 107/238 (44%), Positives = 142/238 (59%), Gaps = 40/238 (16%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
DA++ S INS TSF+AGFVIFSVLG+MA GVPI+EVA GPGL FI YP A+ +P S
Sbjct: 267 DALIVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESGPGLAFIAYPEAVTMLPLS 326
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
FWS++FF+ML+TLGLDS FGG E IITAL DEFP L+ RE+F + + F++GL
Sbjct: 327 PFWSVLFFLMLITLGLDSQFGGVEGIITALVDEFPILLRKRRELFTLIVCVISFLIGLIL 386
Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 152
+GG Y F L D YAA + +L V FE IA
Sbjct: 387 VTEGGIYVFTLFDYYAASFGLLFVVFFECIAVAWVYGLDRFYDDIKEMLGFRPGLFWRLC 446
Query: 153 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMI 200
F+ ++ + Y+PL+Y +YVYP WAN LG +A SS++ IP ++Y+++
Sbjct: 447 WKFVSPLILLFLFIFSIVQYKPLTYNNYVYPNWANALGWLMALSSMLCIPLYSIYKLL 504
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 218 bits (556), Expect = 8e-68
Identities = 109/255 (42%), Positives = 149/255 (58%), Gaps = 41/255 (16%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVE-GPGLVFIVYPAAIATMPG 61
DA++TS++N TSF++GFVIF+VLGYMA + + EVA + GP L+FI Y AIA MPG
Sbjct: 282 DALVTSVVNCLTSFVSGFVIFTVLGYMAEMRNEDVIEVATDAGPSLLFITYAEAIANMPG 341
Query: 62 SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLA 120
S F+++IFF+M++TLGLDS+FGG E +ITA+ DEFP +IG REIF+ L + F+ LA
Sbjct: 342 STFFAIIFFLMIITLGLDSTFGGLEGVITAVLDEFPHVIGKRREIFVLGLVIVCFLGSLA 401
Query: 121 SCAQGGFYFFHLLDKYAAGYSILIAVLFESIA---------------------------- 152
+ GG Y LL++YA G ++L VL E+IA
Sbjct: 402 TLTFGGAYVVKLLEEYATGPAVLTVVLLEAIAVSWFYGITQFCSDIKEMLGFTPGWFWRV 461
Query: 153 -----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMII 201
FIIV L L Y YP W+ V+G I SS+I IP A+Y++II
Sbjct: 462 CWVAISPLFLLFIIVSFLMNPPQLRLFDYNYPYWSIVVGYCIGMSSIICIPIYALYKLII 521
Query: 202 TPGTFMQRLNTLLTP 216
TPG+ +R+ +TP
Sbjct: 522 TPGSLKERIIKSITP 536
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 209 bits (533), Expect = 3e-64
Identities = 109/265 (41%), Positives = 154/265 (58%), Gaps = 39/265 (14%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
DA+LTS IN TSFI+GF IFS+LGYMAH V I +VA EG GLVFI+YP AI+T+ GS
Sbjct: 287 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFILYPEAISTLSGS 346
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
FW+++FF+MLLTLG+DSS GG EA+IT L+D+F ++ +R++F + + F++ L
Sbjct: 347 TFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDFSILKKHRKLFTFGVAFITFLLALFCI 406
Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
GG Y LLD +AAG SIL AVL E+I
Sbjct: 407 TNGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSDDIQQMMGFRPGLYWRLCW 466
Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
F+++ + ++PL+Y+ Y +P WAN G IA SS++++P +Y+ P
Sbjct: 467 KFVSPAFLLFVVIVSIINFKPLTYDDYNFPPWANRTGWGIALSSMLLVPIYVIYKFFTVP 526
Query: 204 GTFMQRLNTLLTPWRDHQTVLARSL 228
GTF +RL +TP +H V +
Sbjct: 527 GTFEERLAYCITPENEHYLVAQGDI 551
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 208 bits (531), Expect = 5e-64
Identities = 109/260 (41%), Positives = 153/260 (58%), Gaps = 39/260 (15%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
DAI+T+ INS TSF +GFV+FS LGYMA VPI +VA +GPGL+FI+YP AIAT+P S
Sbjct: 286 DAIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPIGDVAKDGPGLIFIIYPEAIATLPLS 345
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
W++IFF+MLLTLG+DS+ GG E++IT L DEF + +RE+F + F++ L
Sbjct: 346 SVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEFKFLHRHRELFTLFIVLSTFLISLFCV 405
Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
GG Y F LLD +AAG SIL VL E+I
Sbjct: 406 TNGGIYVFTLLDHFAAGTSILFGVLIEAIGIAWFYGVGRFSDDIEEMIGQRPGLYWRLCW 465
Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
F++V + T+ P Y SY++P WAN++G +A SS+ M+P A+Y+ P
Sbjct: 466 KFVSPCFLLFVVVVSIVTFRPPKYGSYIFPDWANMVGWCLAISSMAMVPLYAIYKFCSLP 525
Query: 204 GTFMQRLNTLLTPWRDHQTV 223
G+F ++L +TP ++H+ V
Sbjct: 526 GSFREKLAYAITPEKEHELV 545
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 198 bits (506), Expect = 2e-60
Identities = 94/257 (36%), Positives = 135/257 (52%), Gaps = 40/257 (15%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
D ++ +L N TS AGF IFSVLG+MAH GVP+ +VA GPGL F+ YP A+ +P S
Sbjct: 285 DTLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVKDVADAGPGLAFVAYPEALTLLPVS 344
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
FWS++FF MLLTLGLDS F E I+TA++DEFP L+ + F+ + +++GL
Sbjct: 345 PFWSILFFFMLLTLGLDSQFAMLETIVTAVTDEFPYLLRKYKTWFLGLICVGMYLLGLLL 404
Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 152
GG Y+ L+D Y+A + +++ LF +A
Sbjct: 405 VTDGGMYWLTLMDWYSASFGLMVLALFMCLAISWVYGIQRFCRDIKMMIGFEPNLYFKAC 464
Query: 153 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
FI+VY + Y+P Y SY YP WA +LG+ + S +MIP A+ ++
Sbjct: 465 WMFISPALLLFILVYSIVKYQPSEYGSYRYPPWAELLGILMGLLSCLMIPIGAIVAILRE 524
Query: 203 PGTFMQRLNTLLTPWRD 219
G+ +RL P D
Sbjct: 525 EGSLWERLKQACRPAMD 541
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 193 bits (492), Expect = 2e-59
Identities = 77/157 (49%), Positives = 104/157 (66%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
DA++ S++N+ TS +AGFVIFSVLG++AH GVP+ +V GPGL F+VYP AIA MP
Sbjct: 222 DALIVSILNTLTSLLAGFVIFSVLGFLAHELGVPVADVVKGGPGLAFVVYPEAIAKMPVP 281
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
WS++FF ML LGLDS F E I+TA+ DEFP + + + + + F++GL
Sbjct: 282 QLWSVLFFFMLFLLGLDSQFAIVETIVTAIVDEFPKLRKRKWLVTLGVCVVGFLLGLPYV 341
Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGL 159
QGG Y LLD YAA +S+L+ LFE IA +YG+
Sbjct: 342 TQGGIYILDLLDYYAATFSLLVLALFELIAISWIYGV 378
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 185 bits (472), Expect = 2e-55
Identities = 105/258 (40%), Positives = 138/258 (53%), Gaps = 44/258 (17%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
D +L +NS TSF++GF IFSVLG+MA GV I +VA GPGL FI YP A+ MP
Sbjct: 285 DCMLLGCLNSGTSFVSGFAIFSVLGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMMPLP 344
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
FW+++FF+MLL LGLDS F E IT+L D +P G REIFIA + + +++GL
Sbjct: 345 TFWAILFFIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYRREIFIAIVCFISYLLGL 404
Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIAFIIVYG-------------------- 158
+GG Y F L D YAA G +L FE IA VYG
Sbjct: 405 TMVTEGGMYVFQLFDYYAASGVCLLWVAFFECIAVAWVYGADNFYDAIEDMIGYRPGPWM 464
Query: 159 -------------------LTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
L Y+PL+Y + YVYP+WA LG +A SS+I IP + V +
Sbjct: 465 KWSWIVITPVLCVGCFIFSLVKYKPLTYNKVYVYPEWAIGLGWVLALSSMICIPMVVVIR 524
Query: 199 MIITPGTFMQRLNTLLTP 216
+I + G ++R+ L TP
Sbjct: 525 IIQSDGPLIERIKALATP 542
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 183 bits (466), Expect = 4e-54
Identities = 101/264 (38%), Positives = 145/264 (54%), Gaps = 40/264 (15%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
D ++ + NS TS AGFVIFSV+G+MAH V I VA +GPG+ F+VYP A+ +P S
Sbjct: 311 DTLIVTCTNSATSIFAGFVIFSVIGFMAHELKVNIESVADQGPGIAFVVYPEALTRLPLS 370
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
FW++IFF+MLLTLGLD+ F E I+T++SDEFP + ++ +F +F++G
Sbjct: 371 PFWAIIFFLMLLTLGLDTMFATIETIVTSVSDEFPKYLRTHKPLFTLVCCISFFIMGFPM 430
Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY------------------- 162
QGG Y L+D YAA YS++I +FE + +YGL +
Sbjct: 431 ITQGGMYMLQLVDTYAASYSLVIIAIFELVGISYIYGLQRFCEDIEMMIGFQPNKFWRVC 490
Query: 163 --------------------EPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
EP++Y SY YP W+ VLG + + SVI IP M V +M +
Sbjct: 491 WAFVTPTILTFILCFSFYQWEPMTYGSYHYPNWSMVLGWLMLACSVIWIPIMFVIKMHLA 550
Query: 203 PGTFMQRLNTLLTPWRDHQTVLAR 226
PG+F++RL + +P D LA+
Sbjct: 551 PGSFIERLKLVCSPQPDWGPFLAK 574
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 177 bits (451), Expect = 4e-52
Identities = 100/258 (38%), Positives = 142/258 (55%), Gaps = 41/258 (15%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
D+I+ INSCTS AGFVIFS++G+MAH++ PI +VA GPGL F+ YP A+ +P S
Sbjct: 318 DSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRPIADVAASGPGLAFLAYPEAVTQLPIS 377
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
W+++FF MLL LG+DS F E ITAL DEFP L+ N REIFIA + + +++GL++
Sbjct: 378 PLWAVLFFSMLLMLGIDSQFCTVEGFITALVDEFPRLLRNRREIFIAVVCIVSYLIGLSN 437
Query: 122 CAQGGFYFFHLLDKY-AAGYSILIAVLFESIAFIIVYGLTTY------------------ 162
QGG Y F L D Y A+G S+L V FE ++ YG+ +
Sbjct: 438 ITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIEEMVGYRPCIWWKL 497
Query: 163 ---------------------EPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMII 201
PL+ +YV+P+W +G +A SS+++IPG Y +
Sbjct: 498 CWSFFTPIIVAGVFLFSAVQMTPLTMGNYVFPKWGQGVGWFMALSSMVLIPGYMAYMFLT 557
Query: 202 TPGTFMQRLNTLLTPWRD 219
G+ QRL ++ P D
Sbjct: 558 LKGSLKQRLQVMIQPTED 575
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 175 bits (445), Expect = 4e-51
Identities = 93/257 (36%), Positives = 126/257 (49%), Gaps = 43/257 (16%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
DAI+ + N TS AGF IFSVLG+MAH+ P++EV G L FI YP A+A +P S
Sbjct: 306 DAIVVCVTNCLTSVFAGFAIFSVLGHMAHVLKKPVSEVVDSGFDLAFIAYPEALAKLPIS 365
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIAC-LFSLYFVVGLAS 121
WS++FF MLLTLGLDS F G E I T + D FP + + I I + + F++GL
Sbjct: 366 PLWSILFFFMLLTLGLDSQFAGIETITTTIQDAFPKVMKKKRIPITLGVCIILFLLGLPC 425
Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG----------------------- 158
Q G Y+ +L+D + AG+ IL A + E I I +YG
Sbjct: 426 VTQAGIYWVNLIDHFCAGWGILFAAVLELIGIIWIYGGNRFIEDIEMMIGKKSWIFWLWW 485
Query: 159 -------------------LTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQM 199
L T+ +Y S YP W LG + + +I IP +AVY++
Sbjct: 486 RACWFFITPVLLIAILIWSLVTFHSPTYGSVPYPDWGTALGWCMIAFCLIWIPIVAVYKI 545
Query: 200 IITPGTFMQRLNTLLTP 216
I G QRL + P
Sbjct: 546 IKAKGNIFQRLKSCCRP 562
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 170 bits (433), Expect = 8e-50
Identities = 99/261 (37%), Positives = 139/261 (53%), Gaps = 44/261 (16%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
D I +NS TSF+AGF IFS+LG+MA+ GVPI+EVA GPGL FI YP A++ MP S
Sbjct: 282 DCIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEVAESGPGLAFIAYPRAVSMMPFS 341
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
W+ FF+M++ LGLDS F E+++TA+ D +P + N RE+ I + + F+VGL
Sbjct: 342 PLWACFFFIMIVLLGLDSQFVCVESLVTAMVDMYPEVFRKKNRRELLILFVSIVSFLVGL 401
Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIAFIIVYG-------------------- 158
+GG Y F L D YAA G +L +FE++ VYG
Sbjct: 402 IMLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCIAWVYGADRFYDNIEDMIGYRPGPYI 461
Query: 159 -------------------LTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
L Y PL Y + YVYP W + +G +A SS++ IP +Y+
Sbjct: 462 KYCWLFITPAVCVATFLFSLIKYTPLKYNKEYVYPWWGDAIGWLLALSSMVCIPLWIIYK 521
Query: 199 MIITPGTFMQRLNTLLTPWRD 219
+ T G+ +R++ LL P D
Sbjct: 522 LSTTKGSLRERIHQLLCPSPD 542
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males, this
disorder is characterized by language and speech delays,
autistic-like behavior, seizures in about 50% of cases,
and can also involve midfacial hypoplasia, and short
stature. In females, it is characterized by mild
cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 168 bits (428), Expect = 8e-49
Identities = 102/264 (38%), Positives = 136/264 (51%), Gaps = 45/264 (17%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
DA + +LINS TSF AGFV+FSVLG+MA GV I++VA GPGL FI YP A+ MP +
Sbjct: 297 DAFILALINSGTSFFAGFVVFSVLGFMASEQGVDISKVAESGPGLAFIAYPKAVTLMPVA 356
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGN---NREIFIACLFSLYFVVGL 119
W+ +FF MLL LGLDS F G E IT + D FP REI A L F++ L
Sbjct: 357 PLWAALFFFMLLLLGLDSQFVGVEGFITGILDLFPQKYYGRLRREITAALCCLLCFLIDL 416
Query: 120 ASCAQGGFYFFHLLDKY-AAGYSILIAVLFESIAFIIVYG-------------------- 158
+ QGG Y F L D Y A+G ++L +E + VYG
Sbjct: 417 SMVTQGGMYVFQLFDYYSASGITLLWQAFWECVVIAWVYGADRFMDDIARMIGYRPLPWM 476
Query: 159 -------------------LTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
+ Y+PL+Y ++YVYP W +G A+A SS++ IP +Y+
Sbjct: 477 KWCWSVITPLVCVGIFLFHVVNYKPLTYNKTYVYPWWGEAIGWALALSSMLCIPLTVLYK 536
Query: 199 MIITPGTFMQRLNTLLTP-WRDHQ 221
++ G+F +R L TP W H
Sbjct: 537 LLRAKGSFRERWQLLTTPVWGHHH 560
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1 is
encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target for
antiepileptic drugs. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 541
Score = 165 bits (420), Expect = 5e-48
Identities = 104/258 (40%), Positives = 136/258 (52%), Gaps = 44/258 (17%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
D I+ +NS TSF+AGF IFSVLG+MA GVPI+EVA GPGL FI YP A+ MP S
Sbjct: 284 DCIMLCFLNSATSFVAGFAIFSVLGFMAREQGVPISEVAESGPGLAFIAYPTAVTMMPVS 343
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
WS +FF+ML+ LGLDS F E+++TA D FP + RE+ I + + +++GL
Sbjct: 344 QLWSCLFFLMLIFLGLDSQFVCVESMVTASIDMFPGVFRKKGRRELLILAIAVICYLLGL 403
Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIAFIIVYG-------------------- 158
+GG Y F L D YAA G +L +FE I VYG
Sbjct: 404 LLVTEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGWVYGANRFYDNIEDMIGYRPWPLI 463
Query: 159 -------------------LTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
L Y PL Y SYVYP W VLG +A SS++ IP A++
Sbjct: 464 KICWLVFTPGLCLAVFLFSLIKYTPLKYNNSYVYPPWGYVLGWLMALSSMVCIPLYAIFI 523
Query: 199 MIITPGTFMQRLNTLLTP 216
++ T G+ QRL L++P
Sbjct: 524 LLKTKGSLKQRLMQLISP 541
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter
3; solute-binding domain. This family includes human
GAT3 (hGAT3) a high-affinity transporter of
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 164 bits (415), Expect = 3e-47
Identities = 103/258 (39%), Positives = 133/258 (51%), Gaps = 44/258 (17%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
D I+ +NS TSF+AGF IFSVLG+MA+ GVPI EVA GPGL FI YP A+ MP S
Sbjct: 285 DCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESGPGLAFIAYPKAVTMMPLS 344
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
W+ +FFMML+ LGLDS F E+++TA+ D +P + G RE+ I L + + +GL
Sbjct: 345 PLWATLFFMMLIFLGLDSQFVCVESLVTAVVDMYPKVFRRGYRRELLILALSIVSYFLGL 404
Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIAFIIVYG-------------------- 158
+GG Y F L D YAA G +L +FE I VYG
Sbjct: 405 VMLTEGGMYIFQLFDSYAASGMCLLFVAIFECICIGWVYGSNRFYDNIEDMIGYRPLSLI 464
Query: 159 -------------------LTTYEPLSYES-YVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
L Y+PL Y + Y YP W +G +A SS+I IP +
Sbjct: 465 KWCWMVITPGICAGIFIFFLVKYKPLKYNNVYTYPDWGYGIGWLMALSSMICIPLWICIK 524
Query: 199 MIITPGTFMQRLNTLLTP 216
M T GTF ++L L TP
Sbjct: 525 MWKTEGTFPEKLQKLTTP 542
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a
role in schizophrenia. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 150 bits (379), Expect = 8e-42
Identities = 95/262 (36%), Positives = 140/262 (53%), Gaps = 48/262 (18%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
D+I+ S+ N TS AGFVIFS+LG+MA+ GV ++EVA GPGL F+ YP A+ +P S
Sbjct: 313 DSIIISITNCATSVYAGFVIFSILGFMANHLGVDVSEVADHGPGLAFVAYPEALTLLPIS 372
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLY-----FVV 117
WSL+FF ML+ LGL + F E ++TA+ DE IGN+ I +L F++
Sbjct: 373 PLWSLLFFFMLILLGLGTQFCLLETLVTAVVDE---IGNDWIIRNKTYVTLGVAIIGFLL 429
Query: 118 GLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------- 152
G+ Q G Y+ L+D YAA +S++I IA
Sbjct: 430 GIPLTTQAGIYWLLLMDNYAASFSLVIISCIMCIAIMYIYGHRNYFKDIEMMLGFPPPLF 489
Query: 153 --------------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
FI+++ + Y P++Y YVYP WA V+G +A SSVI IP A+++
Sbjct: 490 FQICWRFVSPAIIFFILIFTVIQYRPITYNDYVYPGWAIVIGFLMALSSVICIPIYAIFK 549
Query: 199 MIITPG-TFMQRLNTLLTPWRD 219
+ ++ G TF++RL + P +D
Sbjct: 550 ICMSEGDTFLERLKNAVKPSKD 571
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 135 bits (342), Expect = 1e-36
Identities = 84/295 (28%), Positives = 116/295 (39%), Gaps = 99/295 (33%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMA-------------------------------- 30
DA+L SLIN TS A V+FSVLG+ A
Sbjct: 271 DAVLVSLINCFTSIFASIVVFSVLGFKATTRYDRCVDSNILILVINFLLNSTEDYVDNYT 330
Query: 31 HISGVPINEV----------------AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLL 74
I+ V + E AVEG GL FIV+ AI PG+ FWS++FF+MLL
Sbjct: 331 AINNVTLTENQTLGLTNCSLEDELDEAVEGTGLAFIVFTEAIVKFPGAPFWSVLFFLMLL 390
Query: 75 TLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLD 134
TLGL S FG E ++T L D L +E + + F++GL + G Y+ + D
Sbjct: 391 TLGLGSMFGTLEGVLTPLFDSKILPKVPKEYLTGLVCLVCFLIGLIFTQRSGNYWVQMFD 450
Query: 135 KYAAGYSILIAVLFESIAFIIVYGLTTYE------------------------------- 163
Y+ +LI LFE IA VYGL +E
Sbjct: 451 SYSGTLPLLIIALFEMIAVSYVYGLDRFEDDIEYMTGKRPGWYWKITWRYVSPLAMLVIL 510
Query: 164 ----------PLSY----------ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
P +Y ES YP W + + + S++ IP +A+ +
Sbjct: 511 VASIVQLVTKPPTYSAWNAELASTESLPYPGWGLAVIILLILLSILPIPVVALLR 565
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 125 bits (316), Expect = 3e-33
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMP-- 60
+A++ + NS +AG +FS+LG+MA GVP++EV G GL F+ +P AI MP
Sbjct: 252 NALIVAFANSSFEILAGIGVFSILGFMAQAQGVPVSEVVSSGIGLAFVAFPKAINLMPPG 311
Query: 61 GSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLA 120
G++F ++FF+ L+ GL S E +I+AL D+F + + + I CL F+V L
Sbjct: 312 GALF-GVLFFLSLVFAGLTSLISLVEVVISALQDKFG-LSRKKAVTIVCLVG--FLVSLL 367
Query: 121 SCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGL 159
G Y ++D + Y I++ L E I V+G
Sbjct: 368 FATGAGLYLLDIVDHFINNYGIVLVGLVEVIVVGWVFGA 406
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain, and
are involved in regulating neurotransmitter signaling
and homeostasis, and are the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 406
Score = 107 bits (270), Expect = 3e-27
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
DA++ + NS IAGF +F ++GY+ GV A+ G L F+ YP AIA MPGS
Sbjct: 219 DALIIAGSNSLFEIIAGFAVFGIVGYLGMTPGV--EGEALGGFVLGFVTYPEAIAQMPGS 276
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
F++++FF+ L LG+ S+F EA++T + D R + + F++ L C
Sbjct: 277 NFFAVLFFLTLFLLGISSAFALLEAVVTLICDSGWGRKVKRWWIATVVCFVSFLLSLPYC 336
Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLT 160
+ G+Y +D + + +++ V E +A VY
Sbjct: 337 TRFGYYLLDAVDAWISNVALVFVVWAECVAATTVYRFE 374
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 99 bits (249), Expect = 4e-24
Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 21/176 (11%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGY-----------MAHISGVPINE---VAVEGPGLV 48
DA+L S IN TS +A V+F+VLG+ + I + AV+G GL
Sbjct: 273 DAVLVSFINFFTSVLATLVVFAVLGFKIQKVKEEEFSALGLDSCLIEDELDKAVQGTGLA 332
Query: 49 FIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIF-- 106
FI + A+ P S FWS++FF+ML+ LGL S FG E I T + D F + +EI
Sbjct: 333 FIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGITTPIVDTFKV---RKEILTV 389
Query: 107 IACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
I CLF+ F++GL + G YF + D Y+A +LI V+ E+IA +YG+ +
Sbjct: 390 ICCLFA--FLIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVAWIYGIKKF 443
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 93.6 bits (233), Expect = 7e-22
Identities = 58/192 (30%), Positives = 83/192 (43%), Gaps = 36/192 (18%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVE------------------- 43
DA + +L+N TS IA + F+V+G+ A +S E VE
Sbjct: 269 DAFVVALVNLLTSLIATPIFFAVMGFWATVSTHRCCEKNVENLLMLGVLPPEAKPPADLS 328
Query: 44 -----------------GPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSE 86
GPG F+ + AI+ PGS FW+++FF+ LL GL + FG +
Sbjct: 329 LDPASIYLLWLFNLPMEGPGFAFLAFSEAISLAPGSAFWAIVFFLALLLAGLSTMFGIMQ 388
Query: 87 AIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAV 146
I T L D F + ++ + F+ GL G YF LLD Y I+ V
Sbjct: 389 GIYTPLQDTFSFFRKHPKLLTVLVCVGLFLGGLVFTQPSGSYFRSLLDDYLVPLPIIFIV 448
Query: 147 LFESIAFIIVYG 158
+FE+IA YG
Sbjct: 449 VFENIALAWAYG 460
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 89.6 bits (223), Expect = 1e-20
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
A+ L+N+ S +AG VIF L + +GPGLVFIV PA MP
Sbjct: 250 SALSIVLLNTLISLLAGLVIFPALFSFGADAS--------QGPGLVFIVLPAVFNQMPLG 301
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
+ ++FF++LL L S+ E ++ AL D+F G +R+ + L F++G+ S
Sbjct: 302 TLFGILFFLLLLFAALTSAISMLEVLVAALIDKF---GISRKKATWLIGILIFLLGIPSI 358
Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGL 159
G F L+D + + + L +I V
Sbjct: 359 LSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKK 395
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 89.1 bits (221), Expect = 2e-20
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 7/129 (5%)
Query: 39 EVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPL 98
+ AV+G GL FIVY AI M S WS+++F MLL LG+ S G + AI+T L+D +
Sbjct: 364 DTAVQGTGLAFIVYSEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTD-SKI 422
Query: 99 IGNN--REIF--IACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFI 154
I ++ +E + C + ++GL + G Y+F + + YAA S+L+ VL E+IA
Sbjct: 423 ISSHLPKEAISGLVCFINC--IIGLVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVC 480
Query: 155 IVYGLTTYE 163
VYGL +E
Sbjct: 481 YVYGLRRFE 489
Score = 31.4 bits (71), Expect = 0.44
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 4 AILTSLINSCTSFIAGFVIFSVLGYMA 30
AI+ SLINS TS A V FS+ G+ A
Sbjct: 275 AIIVSLINSGTSIFASIVTFSIYGFKA 301
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 88.7 bits (220), Expect = 4e-20
Identities = 73/307 (23%), Positives = 115/307 (37%), Gaps = 111/307 (36%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMA-------------------------------- 30
DA+ +L+NS TS A +FSVLG+ A
Sbjct: 272 DAVTIALVNSMTSLYASIPVFSVLGFKATNDYEHCLDRNILSLINEFDFPEQSISRDNYP 331
Query: 31 ------------HISGVPIN--------EVAVEGPGLVFIVYPAAIATMPGSIFWSLIFF 70
++ +P+ + + GPGL FIV+ A+ MPG+ W+++FF
Sbjct: 332 SVLMHLNATWPERVAQLPLKACLLEDFLDKSASGPGLAFIVFTEAVLHMPGAQVWAVLFF 391
Query: 71 MMLLTLGLDSSFGGSEAIITALSDEFPLI-GNNREIF--IACLFSLYFVVGLASCAQGGF 127
ML TLGL S FG E +IT L D L +E + CL F+ L Q G
Sbjct: 392 GMLFTLGLSSMFGNVEGVITPLLDVGVLPRWVPKEALTGLVCLVC--FLSALCFTLQSGN 449
Query: 128 YFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY------------------------- 162
Y+ + D +AA ++L+ FE + + VYG+ +
Sbjct: 450 YWLEIFDSFAASLNLLVIAFFEVVGVVYVYGIKRFCDDIEWMTGRRPSLYWRLTWRVVSP 509
Query: 163 ----------------EPLSY-------------ESYVYPQWANVLGVAIASSSVIMIPG 193
+P SY E +YP W + V ++ V+ +P
Sbjct: 510 LLLLTIFVAYIILLFQKPPSYKAWNPKYELFPSREEKLYPGWVQAICVLLSLLPVLWVPV 569
Query: 194 MAVYQMI 200
+A+ Q++
Sbjct: 570 VALAQLL 576
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 88.4 bits (219), Expect = 6e-20
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 41 AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIG 100
AV+G GL FI + A+ P S FWS++FF+ML+ LGL S FG E IIT + D F +
Sbjct: 375 AVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVDTFKV-- 432
Query: 101 NNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLT 160
+EI L F +GL + G YF + D Y+A +LI V+ E+IA VYG+
Sbjct: 433 -RKEILTVICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGID 491
Query: 161 TY 162
+
Sbjct: 492 KF 493
Score = 34.1 bits (78), Expect = 0.060
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVE 43
DA+L S IN TS +A V+F+VLG+ A++ INE +
Sbjct: 273 DAVLVSFINFFTSVLATLVVFAVLGFKANV----INEKCII 309
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 81.9 bits (202), Expect = 9e-18
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 21/173 (12%)
Query: 41 AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIG 100
+V+G GL FI + A+ P S FWS++FF+ML+ LGL S G I T + D F +
Sbjct: 375 SVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMSGITTPIIDTFKV-- 432
Query: 101 NNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG-- 158
+E+F F+VGL + G YF + D Y+A + I V+ E+IA +YG
Sbjct: 433 -RKEVFTVGCCIFAFLVGLIFVQRSGNYFVTMFDDYSATLPLTIVVILENIAVAWIYGTK 491
Query: 159 --------LTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
+ + P S+ Y + + + + ++S+I Q+ ++P
Sbjct: 492 KFMQELTEMLGFRPYSFYFYTWKYVSPICMAVLMTASII--------QLGVSP 536
Score = 33.0 bits (75), Expect = 0.13
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHI 32
DA L S IN TS +A V+F+VLG+ A+I
Sbjct: 273 DAALVSFINFFTSVLATLVVFAVLGFKANI 302
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 74.9 bits (184), Expect = 2e-15
Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 11/125 (8%)
Query: 41 AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD------ 94
VEG GL FIV+ AI MP S WS++FF+ML LGL S FG E ++ L D
Sbjct: 361 GVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVLVPLQDLKVIPK 420
Query: 95 EFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFI 154
+P +EI + + F++GL G Y+ L D +A +LI E + +
Sbjct: 421 SWP-----KEIITGLICLVSFLIGLIFVLGSGNYWLALFDSFAGSIPLLIIAFCEMFSVV 475
Query: 155 IVYGL 159
VYG+
Sbjct: 476 YVYGI 480
Score = 29.9 bits (67), Expect = 1.4
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMA 30
DA++ S+IN TS A VI+S++G+ A
Sbjct: 271 DAVIISVINGFTSIYAATVIYSIIGFRA 298
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 59.4 bits (145), Expect = 3e-10
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
A++ +++++ + +AG VIF + + + GPGL+FI PA A MPG
Sbjct: 246 SALIVAILDTLVALLAGLVIFPAV-FAFGLE-------PAAGPGLLFITLPAVFAQMPGG 297
Query: 63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNRE---------IFIACLFSL 113
+ ++FF++LL L S+ E + L DEF G +R+ IF+ + S
Sbjct: 298 RLFGILFFLLLLFAALTSAISLLEVPVAYLIDEF---GWSRKKATLIVGIIIFLLGIPSA 354
Query: 114 YFVVGLASCAQGGFYFFHLLDKYAAGY-----SILIAVLF 148
L+ G F LLD + +LIA+
Sbjct: 355 LSFGVLSDPTIFGKTIFDLLDFLVSNILLPLGGLLIAIFV 394
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 51.9 bits (125), Expect = 9e-08
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 46 GLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREI 105
GL FI P + MPG F+ ++F +L G+ SS + +I L +E +R+
Sbjct: 300 GLGFIALPNVFSQMPGGQFFGFLWFFLLFFAGITSSIAMLQPLIAFLEEEL---KWSRKH 356
Query: 106 FIACLFSLYFVVGLASCA-QGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG 158
+F+L +VGL LD + +++ L E I F ++G
Sbjct: 357 AALWIFALVIIVGLPVAFEFIDLKALDELDFWVGTILLVVLGLIEVIVFAWIFG 410
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 31.8 bits (72), Expect = 0.31
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 17 IAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTL 76
IA +VI S MA + +P YP +PGS+ + F L
Sbjct: 246 IAAYVITSDPQLMASLGNLP-------SAANADKAYPWLTQFLPGSVGVKGLVFAALAAA 298
Query: 77 GLDSSFGGSEAIITALSDEFP 97
+ S + T L+ +
Sbjct: 299 IVSSLAAMLNSTATILTMDIY 319
>gnl|CDD|236581 PRK09598, PRK09598, lipid A phosphoethanolamine transferase;
Reviewed.
Length = 522
Score = 31.7 bits (72), Expect = 0.33
Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 19/158 (12%)
Query: 66 SLIFFMMLLTLGLDSSFGGSEAIITALSDEFPL----IGNNREI-FIACLFSLYFVVGLA 120
+ +F + L G +++ + FPL + ++ FIA L L F V
Sbjct: 2 ASLFHLKFLKPLSCLQAGLLYSLLNGVLYHFPLFAYVYKESNQVSFIAMLVVLLFCVNGL 61
Query: 121 SCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLG 180
F LL + S ++ L SIAF Y + TY+ +S + NVL
Sbjct: 62 L-----FLLLGLLSRRLMRLSAIVFSLLNSIAF---YFINTYKVFLNKSMM----GNVLN 109
Query: 181 VAIASSSVIMIPGMAVYQMI--ITPGTFMQRLNTLLTP 216
A SS + + +Y ++ + PG + ++ +
Sbjct: 110 TNTAESSGFLSVKLFIYIVVLGVLPGYIIYKIPLKNSS 147
>gnl|CDD|162787 TIGR02253, CTE7, HAD superfamily (subfamily IA) hydrolase,
TIGR02253. This family of sequences from archaea and
metazoans includes the human uncharacterized protein
CTE7. Pyrococcus species appear to have three different
forms of this enzyme, so it is unclear whether all
members of this family have the same function. This
family is a member of the haloacid dehalogenase (HAD)
superfamily of hydrolases which are characterized by
three conserved sequence motifs. By virtue of an alpha
helical domain in-between the first and second conserved
motif, this family is a member of subfamily IA
(TIGR01549).
Length = 221
Score = 28.1 bits (63), Expect = 3.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 73 LLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACL 110
L LG+ F +A+IT S+E + + +IF A L
Sbjct: 128 LERLGVRDFF---DAVIT--SEEEGVEKPHPKIFYAAL 160
>gnl|CDD|225377 COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell
envelope biogenesis, outer membrane].
Length = 373
Score = 27.7 bits (62), Expect = 5.6
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 168 ESYVYPQWANVLGVAIASSSVIMIPG--MAVYQMIITPGTFM 207
S+V+ + ++ V + P +AV + II PG +
Sbjct: 261 PSFVFFKETPGAPPPKGAAGVPLTPERSVAVDRSIIPPGAPL 302
>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 27.7 bits (62), Expect = 6.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 131 HLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYE 168
+K GYS+L+A + FI+V YEP E
Sbjct: 78 SDYEKTNTGYSLLLAKDYMDGRFILVMSDHVYEPSILE 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.422
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,349,172
Number of extensions: 1343536
Number of successful extensions: 2325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2245
Number of HSP's successfully gapped: 239
Length of query: 252
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 157
Effective length of database: 6,723,972
Effective search space: 1055663604
Effective search space used: 1055663604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.0 bits)