RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5258
         (252 letters)



>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
           protein, transport protein; HET: BOG; 1.65A {Aquifex
           aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
           2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
           3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
           3uso_A 3usp_A* 3qs5_A* ...
          Length = 519

 Score = 82.8 bits (205), Expect = 2e-18
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 9/157 (5%)

Query: 4   AILTSLINSCTSFIAGFVI--FSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPG 61
            +  + +N     I G  I   + + +    + V I +       L FI  PA  +   G
Sbjct: 279 GLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAG--AFNLGFITLPAIFSQTAG 336

Query: 62  SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLAS 121
             F   ++F +L   GL SS    + +I  L DE      +R+  +    ++ F      
Sbjct: 337 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL---KLSRKHAVLWTAAIVFFSAHLV 393

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG 158
                      +D +A    ++   L E I F  ++G
Sbjct: 394 M--FLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG 428


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 35.2 bits (80), Expect = 0.017
 Identities = 38/250 (15%), Positives = 68/250 (27%), Gaps = 69/250 (27%)

Query: 36  PINEVAVEGPG------LVFIVY--PAAIATMPGSIFW----------SLIFFMMLLTLG 77
           P   V ++G        +   V         M   IFW          +++  +  L   
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 78  LDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLL---- 133
           +D ++       T+ SD    I        A L  L       +C         LL    
Sbjct: 209 IDPNW-------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---------LLVLLN 252

Query: 134 -------DKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQ------WANVLG 180
                  + +     IL+   F+ +   +    TT+  L + S               L 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 181 VAIAS--SSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRD-----HQTVLARSL-SLNG 232
                    V+      +  +I      ++        W+        T++  SL  L  
Sbjct: 313 CRPQDLPREVLTTNPRRL-SII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-- 366

Query: 233 GITSDPAQIR 242
               +PA+ R
Sbjct: 367 ----EPAEYR 372


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.63
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 48/147 (32%)

Query: 4   AILTSLINSCTS----FIAGFVIFSVL---------GYMAH--ISGVPINEVAVEGPGLV 48
             L+ LI +       F  G  I   L          Y+    IS  P+        G++
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS-CPLI-------GVI 244

Query: 49  ----FIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITAL----SDEFPLIG 100
               ++V    +   PG +   L             + G S+ ++TA+    +D +    
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYL-----------KGATGHSQGLVTAVAIAETDSWESFF 293

Query: 101 NNREIFIACLFSLYFVVGLASCAQGGF 127
            +    I  LF     +G+       +
Sbjct: 294 VSVRKAITVLFF----IGVRC--YEAY 314


>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
           membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
           maritima} PDB: 4av6_A
          Length = 735

 Score = 28.2 bits (63), Expect = 3.1
 Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 41  AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLT-LGLDSSFGGSEAIITALSDEFPLI 99
           +   P  V  +    +  +P     +LI + +    +GL  S  G   +I     + P  
Sbjct: 269 SYMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILYVIVKKPSDNPQR 328

Query: 100 GNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGL 159
             N  ++ + L ++     L            +L       S   + +    + I++   
Sbjct: 329 ELNISLWTSALLTVVLTAFLTYFYLKDLQGLDVLGFRFGAISPWFSAIIGIFSGILIGFW 388

Query: 160 TTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAV 196
             Y    Y SY Y     +   +I  + +++  G+++
Sbjct: 389 AEY----YTSYRYKPTQFLGKSSIEGTGMVISNGLSL 421


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 27.9 bits (62), Expect = 4.0
 Identities = 5/14 (35%), Positives = 6/14 (42%)

Query: 83   GGSEAIITALSDEF 96
            GG +      S EF
Sbjct: 1131 GGYDDFQEEGSFEF 1144


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,907,232
Number of extensions: 234454
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 14
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.5 bits)