RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5258
         (252 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 74.8 bits (183), Expect = 4e-16
 Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 47/233 (20%)

Query: 1   MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMP 60
           +   +  + +N     I G  I              +         L FI  PA  +   
Sbjct: 272 VLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTA 331

Query: 61  GSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLA 120
           G  F   ++F +L   GL SS    + +I  L DE  L   +  ++ A +          
Sbjct: 332 GGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSA----- 386

Query: 121 SCAQGGFYFFHLLDKYAAGYSILIAVLFESIAF--------------------------- 153
                       +D +A    ++   L E I F                           
Sbjct: 387 HLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYY 446

Query: 154 ------------IIVYGLTTYEPLSYESYVYPQWAN---VLGVAIASSSVIMI 191
                       ++V     Y P   E   +  W     ++G+ +  + ++ +
Sbjct: 447 VMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFL 499


>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 654

 Score = 26.3 bits (57), Expect = 4.3
 Identities = 6/13 (46%), Positives = 6/13 (46%)

Query: 128 YFFHLLDKYAAGY 140
            F HL   Y A Y
Sbjct: 574 TFGHLAGGYDAQY 586


>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 665

 Score = 25.5 bits (55), Expect = 7.4
 Identities = 5/13 (38%), Positives = 5/13 (38%)

Query: 128 YFFHLLDKYAAGY 140
            F HL   Y   Y
Sbjct: 585 TFGHLAGGYDGQY 597


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 922,177
Number of extensions: 40820
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 9
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.0 bits)