BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5259
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 120/268 (44%), Gaps = 53/268 (19%)
Query: 50 GCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 109
G LLC VDK LD +G NLKVIST SVG DHL LD+IK RGIRVG V +D
Sbjct: 53 GAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDT 112
Query: 110 VAEFNIGLAI--------AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 161
AE + L + A++ +K + G + G+ TVG + +
Sbjct: 113 TAELAVSLLLTTCRRLPEAIEEVK-----NGGWTSWKPLWLCGYGLTQSTVGIIGLGRIG 167
Query: 162 EFNIGLAIAVSRRFQQG--HNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLV 219
+ A++RR + + +G + E A+ V
Sbjct: 168 Q-------AIARRLKPFGVQRFLYTGRQPRPEE------------------AAEFQAEFV 202
Query: 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRD 266
L AQSDFI V C+LT TE L + F RG +++Q+ L + L
Sbjct: 203 STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALAS 262
Query: 267 KKIGGAGLDVMIPEPMPADHPLVQLDNC 294
KI AGLDV PEP+P +HPL+ L NC
Sbjct: 263 GKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 114/269 (42%), Gaps = 55/269 (20%)
Query: 50 GCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 109
G LLC VDK LD +G NLKVIST SVG DHL LD+IK RGIRVG V +D
Sbjct: 51 GAHGLLCLLSDHVDKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDT 110
Query: 110 VAEFNIGLAIA-----------VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD 158
AE + L + VKN S + L Q I +G +G +
Sbjct: 111 TAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIAR 170
Query: 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQL 218
+ F + + R+ + E A+
Sbjct: 171 RLKPFGVQRFLYTGRQPRPEE-------------------------------AAEFQAEF 199
Query: 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLR 265
V L AQSDFI V C+LT TE L + F RG +++Q+ L + L
Sbjct: 200 VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQALA 259
Query: 266 DKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
KI AGLDV PEP+P +HPL+ L NC
Sbjct: 260 SGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 39/211 (18%)
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
LKVI+ VG D++ ++ K +GI V SS +VAE +GL +V+R+ +
Sbjct: 66 KLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKM 125
Query: 183 ASGEWALKQTQTV---------------------ISDIIGLNGSTVGIV-----GTELGA 216
G WA K+ + I++ +G+N E+
Sbjct: 126 REGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNG 185
Query: 217 QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEF 263
+ V L+TL +SD + + L + T LI ++ RG ++D ALV+
Sbjct: 186 KFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKA 245
Query: 264 LRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
L++ I GAGLDV EP+P DHPL + DN
Sbjct: 246 LKEGWIAGAGLDVFEEEPLPKDHPLTKFDNV 276
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 140/305 (45%), Gaps = 36/305 (11%)
Query: 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
KPK+ +TR + P V LED F++ + E +PR+I ++K+K AL+ +++
Sbjct: 2 KPKVFITR-EIPEV--GIKXLEDEFEVEVWG-DEKEIPREILLKKVKEVDALVTXLSERI 57
Query: 63 DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
DKE E+ L++++ ++VG+D++ +++ RGI V V +DA A+ L +A
Sbjct: 58 DKEVF-ENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATA 116
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
V G + + K RG+ + D + + I
Sbjct: 117 RHVV-----KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGK------TIGIIGLGRIGQAI 165
Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTE 242
A K+ + I+ + + V EL A+ PL+ L +SDF+ + LT++T
Sbjct: 166 A------KRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETY 219
Query: 243 QLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV 289
LI ++ RG ++D ALV+ L++ I GAGLDV EP + L
Sbjct: 220 HLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY-YNEELF 278
Query: 290 QLDNC 294
+LDN
Sbjct: 279 KLDNV 283
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 45/215 (20%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
+ LKVIS S G+D++ L++ RGI V V + S+AVAEF +GL I + R+
Sbjct: 63 ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF 122
Query: 182 IASGEW-ALKQTQTVISDIIGLNGSTVGIVG----------------------------- 211
I GEW + + T I L G VGI+G
Sbjct: 123 IRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVN 182
Query: 212 --TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------RGGLLDQ 257
EL A+ + +D L +SD + + LT+DT +I ++ RG L+D+
Sbjct: 183 VEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDE 242
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLD 292
+A+ E ++ K+ G DV EP+ +H L + +
Sbjct: 243 KAVTEAIKQGKLKGYATDVFEKEPV-REHELFKYE 276
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 136/338 (40%), Gaps = 102/338 (30%)
Query: 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
KPK+ +TR + P V +LED F++ + E +PR+I ++K+K AL+ +++
Sbjct: 2 KPKVFITR-EIPEV--GIKMLEDEFEVEVWG-DEKEIPREILLKKVKEVDALVTMLSERI 57
Query: 63 DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
DKE + + +
Sbjct: 58 DKEVFENAPK-------------------------------------------------- 67
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
L++++ ++VG+D++ +++ RGI V V +DA A+ L +A +R +G +
Sbjct: 68 -LRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFV 126
Query: 183 ASGEWALK--------------------------QTQTVISDIIGLNGSTVGI------- 209
SGEW + Q + G N +
Sbjct: 127 RSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEE 186
Query: 210 VGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
V EL A+ PL+ L +SDF+ + LT++T LI ++ RG ++D
Sbjct: 187 VERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVD 246
Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
ALV+ L++ I GAGLDV EP + L +LDN
Sbjct: 247 TNALVKALKEGWIAGAGLDVFEEEPY-YNEELFKLDNV 283
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 38/210 (18%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
K LKVI+ +SVG DH+ L+ + RGIRV V ++A A+ + L +AV+RR +G
Sbjct: 64 KGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAY 123
Query: 182 IASGEWALKQTQTVISDI----------IGLNGSTVGIVGTELGAQLV------------ 219
G W + ++ +G G V G ++V
Sbjct: 124 ARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYP 183
Query: 220 --PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFL 264
L+ L ++D + + LT +T +L+ R++ RG L+D EALVE L
Sbjct: 184 FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL 243
Query: 265 RDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
R + GAGLDV PEP+P HPL L N
Sbjct: 244 RG-HLFGAGLDVTDPEPLPPGHPLYALPNA 272
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 39 MPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIR 98
+P+ +++++G L+ ++D E +D + + LKVI+ +SVG DH+ L+ + RGIR
Sbjct: 32 LPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSVGVDHVDLEAARERGIR 90
Query: 99 V 99
V
Sbjct: 91 V 91
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 119/284 (41%), Gaps = 53/284 (18%)
Query: 37 GRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRG 96
G +PR +E + L+ P ++ LD+ + + T D L L R
Sbjct: 13 GLVPRGSHMEAI---GVLMMCPMSTYLEQELDKRFKLFRYW-TQPAQRDFLALQAESIRA 68
Query: 97 IRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS 156
+ VG ++ A AE L A+ L+++S+FSVG D + L + + +G+RV V
Sbjct: 69 V----VGNSNAGADAE----LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVL 120
Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWAL---KQTQTVISDIIGLNGSTVGIVGTE 213
+D VA+ IGL +AV RR + + G W K T +G+ G +G +G
Sbjct: 121 TDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIG--LGRIGLA 178
Query: 214 LGAQLVPLDT-----------------------LCAQSDFIFVTCALTKDTEQLIGRKQF 250
+ + D L + SD + V C LT +T +I R+
Sbjct: 179 VAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVI 238
Query: 251 -------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
RG +D+ LV L + ++GGAGLDV EP
Sbjct: 239 DALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP 282
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 126/300 (42%), Gaps = 52/300 (17%)
Query: 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
K K+L+T +P A + +D+I + + ++ D IE K ALL ++K
Sbjct: 1 KKKILIT---WPLPEAAMARARESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEKC 56
Query: 63 DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAI--- 119
KE +D EN+K IST+S+G DH+ LD K+RGI+VG + A AE + L +
Sbjct: 57 RKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSA 116
Query: 120 --AVKNLKVISTFSV-GHDHLHL--DQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 174
A + K+I T S G + L L +++ ++ + + G + A+A+ G + +
Sbjct: 117 RRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ-ALAKRAQGFDMDID-- 173
Query: 175 FQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVT 234
+ H +S E Q D LD+L + S F +
Sbjct: 174 YFDTHRASSSDE---ASYQATFHD---------------------SLDSLLSVSQFFSLN 209
Query: 235 CALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
T +T + RG L+D E +V L ++ AG DV EP
Sbjct: 210 APSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP 269
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 39/217 (17%)
Query: 117 LAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ 176
LA LK + S G D+L L +++ G+ V + +DA++E + ++V R +
Sbjct: 55 LARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYH 114
Query: 177 QGH-NCIASGEWALKQTQTVISD----IIGLN--GSTVGIVGTELGAQLVPLDTLCAQSD 229
N + +WAL T + ++ I G G ++ + LG ++ ++T +D
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPAD 174
Query: 230 -------------------FIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
FI LT T L + F RG +D
Sbjct: 175 HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
AL+ L ++ A LDV PEP+P DHPL Q D+
Sbjct: 235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV 271
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 104/264 (39%), Gaps = 58/264 (21%)
Query: 74 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVG 133
L+V+ ++ + L + G+ V + V++D + A + L+V+ G
Sbjct: 48 LQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVIN--------AAEKLQVVGRAGTG 99
Query: 134 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQ 193
D++ L+ +GI V +S + AE G+ + ++R+ Q + G+W K+
Sbjct: 100 VDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFM 159
Query: 194 TVISDIIGLNGSTVGIVG-------------------------------TELGAQLVPLD 222
LNG T+GI+G G Q +PL+
Sbjct: 160 GT-----ELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLE 214
Query: 223 TLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKI 269
+ DFI V L T L+ F RGG++D+ AL+ L+ +
Sbjct: 215 EIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQC 274
Query: 270 GGAGLDVMIPEPMPADHPLVQLDN 293
GA LDV EP P D LV +N
Sbjct: 275 AGAALDVFTEEP-PRDRALVDHEN 297
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 43/211 (20%)
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
KNLK+ T +G DH+ L R + V V +S +VAE + + +++ R + H
Sbjct: 111 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE 170
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT--------------- 223
G W + + D+ ++ TV G +G + +L P D
Sbjct: 171 WARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE 230
Query: 224 -------------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
+ D + + C L +TE +I + RG L D+
Sbjct: 231 KELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDR 290
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
+A+ L ++ G DV P+P P DHP
Sbjct: 291 DAVARALESGRLAGYAGDVWFPQPAPKDHPW 321
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 43/211 (20%)
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
KNLK+ T +G DH+ L R + V V +S +VAE + + +++ R + H
Sbjct: 112 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE 171
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT--------------- 223
G W + + D+ ++ TV G +G + +L P D
Sbjct: 172 WARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE 231
Query: 224 -------------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
+ D + + C L +TE +I + RG L D+
Sbjct: 232 KELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDR 291
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
+A+ L ++ G DV P+P P DHP
Sbjct: 292 DAVARALESGRLAGYAGDVWFPQPAPKDHPW 322
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 43/211 (20%)
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
KNLK+ T +G DH+ L R + V V +S +VAE + + +++ R + H
Sbjct: 112 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE 171
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT--------------- 223
G W + + D+ ++ TV G +G + +L P D
Sbjct: 172 WARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE 231
Query: 224 -------------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
+ D + + C L +TE +I + RG L D+
Sbjct: 232 KELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDR 291
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
+A+ L ++ G DV P+P P DHP
Sbjct: 292 DAVARALESGRLAGYAGDVWFPQPAPKDHPW 322
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 49/211 (23%)
Query: 129 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWA 188
T +G DH+ L + G+ V V + +VAE + + + R F G+N + GEW
Sbjct: 92 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 151
Query: 189 LKQTQTVISDIIGLNGSTVGIVGT--------------------------------ELGA 216
+ D L G T+G VG E GA
Sbjct: 152 VAGIAYRAYD---LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA 208
Query: 217 QLVP-LDTLCAQSDFIFVTCALTKDT-----EQLIGR--------KQFRGGLLDQEALVE 262
+ V L+ + + D I + LT+ T ++LIG+ RG +++++A+V+
Sbjct: 209 KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD 268
Query: 263 FLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
+ IGG DV P+P P DHP + N
Sbjct: 269 AVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 299
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 49/211 (23%)
Query: 129 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWA 188
T +G DH+ L + G+ V V + +VAE + + + R F G+N + GEW
Sbjct: 98 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 157
Query: 189 LKQTQTVISDIIGLNGSTVGIVGT--------------------------------ELGA 216
+ D L G T+G VG E GA
Sbjct: 158 VAGIAYRAYD---LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA 214
Query: 217 QLVP-LDTLCAQSDFIFVTCALTKDT-----EQLIGR--------KQFRGGLLDQEALVE 262
+ V L+ + + D I + LT+ T ++LIG+ RG +++++A+V+
Sbjct: 215 KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD 274
Query: 263 FLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
+ IGG DV P+P P DHP + N
Sbjct: 275 AVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 305
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 43/208 (20%)
Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 183
LK+ T +G DH+ L I V V +S++VAE + + + + R + H+
Sbjct: 114 LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWAR 173
Query: 184 SGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT------------------ 223
+G W + D+ G++ TV G +G + L P D
Sbjct: 174 NGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKEL 233
Query: 224 ----------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEAL 260
+ D + + C L +TE +I + RG L D++A+
Sbjct: 234 NLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAI 293
Query: 261 VEFLRDKKIGGAGLDVMIPEPMPADHPL 288
V L ++ G DV P+P P DHP
Sbjct: 294 VRALESGRLAGYAGDVWFPQPAPNDHPW 321
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 43/208 (20%)
Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 183
LK+ T +G DH+ L I V V +S++VAE + + + + R + H+
Sbjct: 115 LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWAR 174
Query: 184 SGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT------------------ 223
+G W + D+ G++ TV G +G + L P D
Sbjct: 175 NGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKEL 234
Query: 224 ----------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEAL 260
+ D + + C L +TE +I + RG L D++A+
Sbjct: 235 NLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAI 294
Query: 261 VEFLRDKKIGGAGLDVMIPEPMPADHPL 288
V L ++ G DV P+P P DHP
Sbjct: 295 VRALESGRLAGYAGDVWFPQPAPNDHPW 322
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 46/218 (21%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD--AVAEFNIGLAIAVSRRFQQGH 179
K LK++ VG DH+ LD I G ++ + S+ +VAE + + + R F H
Sbjct: 84 KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAH 143
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGI--VGTELGAQLVP----------------- 220
I + +W + DI G +T+G +G + +LVP
Sbjct: 144 EQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD 203
Query: 221 ------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
++ L AQ+D + V L T+ LI ++ RG +
Sbjct: 204 AEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAIC 263
Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
E + L ++ G G DV P+P P DHP + N
Sbjct: 264 VAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRN 301
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 46/218 (21%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD--AVAEFNIGLAIAVSRRFQQGH 179
K LK++ VG DH+ LD I G ++ + S+ +VAE + + + R F H
Sbjct: 83 KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAH 142
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGI--VGTELGAQLVP----------------- 220
I + +W + DI G +T+G +G + +LVP
Sbjct: 143 EQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD 202
Query: 221 ------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
++ L AQ+D + V L T+ LI ++ RG +
Sbjct: 203 AEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAIC 262
Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
E + L ++ G G DV P+P P DHP + N
Sbjct: 263 VAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRN 300
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 40/198 (20%)
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
+L +I+ VG D + L + + R I V T V +D VA+ I L +AV RR G +
Sbjct: 93 SLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLV 152
Query: 183 ASGEWA--------------------LKQTQTVISDIIGLNGSTV------GIVGTELGA 216
G WA L Q ++ G +V + G + A
Sbjct: 153 REGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWIA 212
Query: 217 QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEF 263
P+D L SD + V A + T+ ++ RG ++D++AL+E
Sbjct: 213 HQSPVD-LARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271
Query: 264 LRDKKIGGAGLDVMIPEP 281
L+ I GAGLDV + EP
Sbjct: 272 LKSGTIAGAGLDVFVNEP 289
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 81/214 (37%), Gaps = 47/214 (21%)
Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 183
LK I+T SVG+DH+ +S GI+V V SDA AE L + RR + +
Sbjct: 95 LKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVR 154
Query: 184 SGEWALKQTQTVISDIIGLNGSTVGIVG------------------------TELGAQLV 219
SG W ++ GL G +GI G T L L
Sbjct: 155 SGSWPGWGPTQLLG--XGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALE 212
Query: 220 -------PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
LD+L SD + + + + + RG L++ +A
Sbjct: 213 EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDA 272
Query: 260 LVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
L+E LR K + AGLDV EP D LDN
Sbjct: 273 LIEALRSKHLFAAGLDVFANEPA-IDPRYRSLDN 305
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 47/203 (23%)
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
LK+I T SVG DH+ LD K +GI V + S ++VAE + + +R ++ + +
Sbjct: 64 RLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRV 123
Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------ 212
++ Q +++ LN T+G++GT
Sbjct: 124 KKLNFS--QDSEILAR--ELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDLK 179
Query: 213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
E G LD L +SD I + TK+T I ++ RG ++D +A
Sbjct: 180 EKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDA 239
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM 282
L + K G GLDV E +
Sbjct: 240 LYRAYQRGKFSGLGLDVFEDEEI 262
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 100/247 (40%), Gaps = 39/247 (15%)
Query: 49 KGCSALLCNPHQKVDKEALDE--SGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS 106
+GCS++ P VD+E + + S +K I VG + ++ D K + V V S
Sbjct: 44 EGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYS 103
Query: 107 SDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIG 166
A+AE + A+ + L+ I F DH H S I S+ + +G
Sbjct: 104 PRAIAEMTVTQAMYL--LRKIGEFRYRMDHDHDFTWPSNLI---------SNEIYNLTVG 152
Query: 167 LAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCA 226
L I V GH A E VI+ + N E DT+
Sbjct: 153 L-IGV------GHIGSAVAEIFSAMGAKVIAYDVAYNPEF------EPFLTYTDFDTVLK 199
Query: 227 QSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAG 273
++D + + L TE +IG KQ RG L+D AL++ L+D +I GAG
Sbjct: 200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAG 259
Query: 274 LDVMIPE 280
LD + E
Sbjct: 260 LDTLAGE 266
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
K LK+I+ +G D++ ++ + R I+V S+D+ E IGL IA +R+
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 182 IASGEWALKQTQTVISDIIGLN-----GSTVGIVGTELG-------------------AQ 217
SG + + + IG+ G+ VGI+ +G A+
Sbjct: 127 AKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAK 186
Query: 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFL 264
V L+ L SD I + ++KD + +I QF R ++ +AL++++
Sbjct: 187 AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYI 246
Query: 265 RDKKIGGAGLDVMIPEP 281
+ K+ DV EP
Sbjct: 247 KKGKVYAYATDVFWNEP 263
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 47/191 (24%)
Query: 145 RGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNG 204
RGI V T G V ++ VAE +G A+A++R G + +I G
Sbjct: 119 RGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIA--G 176
Query: 205 STVGIVG-------------------------------TELGAQLVPLDTLCAQSDFIFV 233
S +GIVG E G + L+ + +SDFIFV
Sbjct: 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFV 236
Query: 234 TCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280
A+T + ++ +G + F R ++D +AL + I A DV E
Sbjct: 237 VAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DVYPEE 295
Query: 281 PMPADHPLVQL 291
P+P DHP+ L
Sbjct: 296 PLPLDHPVRSL 306
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 50/216 (23%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A LK+++ VG D++ +D +RG+ V + + AE + L +A SR+
Sbjct: 63 AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 122
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
+ W K++ ++I G TVG+VG
Sbjct: 123 ASLREHTW--KRSSFSGTEIF---GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 177
Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
+LG +L+ LD L A++DFI V T +T LI ++ RGGL+
Sbjct: 178 ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 237
Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL 291
D+ AL + + + AGLDV EP D PL +L
Sbjct: 238 DEAALADAITGGHVRAAGLDVFATEPC-TDSPLFEL 272
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 41 RDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRV 99
RD + + ALL VD E L + LK+++ VG D++ +D +RG+ V
Sbjct: 35 RDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLV 92
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 50/216 (23%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A LK+++ VG D++ +D +RG+ V + + AE + L +A SR+
Sbjct: 62 AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 121
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
+ W K++ ++I G TVG+VG
Sbjct: 122 ASLREHTW--KRSSFSGTEIF---GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 176
Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
+LG +L+ LD L A++DFI V T +T LI ++ RGGL+
Sbjct: 177 ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 236
Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL 291
D+ AL + + + AGLDV EP D PL +L
Sbjct: 237 DEAALADAITGGHVRAAGLDVFATEPC-TDSPLFEL 271
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 41 RDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRV 99
RD + + ALL VD E L + LK+++ VG D++ +D +RG+ V
Sbjct: 34 RDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLV 91
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 47/208 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
K L++I G D++ + GI V V S + A+ + + + RR H
Sbjct: 87 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQA 146
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVGTE-------------------------- 213
+ G +++Q + V S + G T+GI+G E
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSD 206
Query: 214 -----LGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
LG Q V L L SD + + C L + LI KQ R GGL
Sbjct: 207 GIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 266
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPM 282
+D++AL + L++ +I GA LDV EP
Sbjct: 267 VDEKALAQALKEGRIRGAALDVHESEPF 294
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 120/300 (40%), Gaps = 44/300 (14%)
Query: 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
PKL++T + + +L ++IT ++ + R+ + + + A++ +VD
Sbjct: 3 PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDRVD 58
Query: 64 KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
+ L E L+VI G D+ +D +RG+ + V + + AE IGLA+ + +
Sbjct: 59 ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
+L+ F G + G+ TVG + A IGLA+A R Q
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGA-----IGLAMA--DRLQGWGAT 170
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
+ E TQT LG + V L A SDFI + L DT
Sbjct: 171 LQYHEAKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 214
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
L+ + RG ++D+ A++ L ++GG DV E AD P
Sbjct: 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRP 274
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 120/300 (40%), Gaps = 44/300 (14%)
Query: 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
PKL++T + + +L ++IT ++ + R+ + + + A++ +VD
Sbjct: 3 PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDRVD 58
Query: 64 KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
+ L E L+VI G D+ +D +RG+ + V + + AE IGLA+ + +
Sbjct: 59 ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
+L+ F G + G+ TVG + A IGLA+A R Q
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGA-----IGLAMA--DRLQGWGAT 170
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
+ E TQT LG + V L A SDFI + L DT
Sbjct: 171 LQYHEAKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 214
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
L+ + RG ++D+ A++ L ++GG DV E AD P
Sbjct: 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRP 274
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 47/219 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A + L I F++G + + LD RGI V ++ +VAE IG + + R + +
Sbjct: 72 AAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 131
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
N +A+G + + + IIG G+ +GI+ LG
Sbjct: 132 AKAHRGVWNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
Q+ L L SD + + T+ ++G K+ RG ++D A
Sbjct: 189 GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 248
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDNC 294
L + L K + GA +DV EP P PL + DN
Sbjct: 249 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 287
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 47/219 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A + L I F++G + + LD RGI V ++ +VAE IG + + R + +
Sbjct: 72 AAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 131
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
N +A+G + + + IIG G+ +GI+ LG
Sbjct: 132 AKAHRGVWNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
Q+ L L SD + + T+ ++G K+ RG ++D A
Sbjct: 189 GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 248
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDNC 294
L + L K + GA +DV EP P PL + DN
Sbjct: 249 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 287
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 47/208 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
K L++I G D++ + GI V V S + A+ + + + RR H
Sbjct: 87 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQA 146
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
+ G +++Q + V S + G T+GI+G
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD 206
Query: 212 ---TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
LG Q V L L SD + + C L + LI KQ R GGL
Sbjct: 207 GIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 266
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPM 282
+D++AL + L++ +I GA LDV EP
Sbjct: 267 VDEKALAQALKEGRIRGAALDVHESEPF 294
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 47/208 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
K L++I G D++ + GI V V S + A+ + + + RR H
Sbjct: 87 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQA 146
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
+ G +++Q + V S + G T+GI+G
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD 206
Query: 212 ---TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
LG Q V L L SD + + C L + LI KQ R GGL
Sbjct: 207 GIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 266
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPM 282
+D++AL + L++ +I GA LDV EP
Sbjct: 267 VDEKALAQALKEGRIRGAALDVHESEPF 294
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 48/215 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
K L+VI G+D++ + GI V + + + A+ I + + RR +
Sbjct: 68 KALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQA 127
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
+ G +++Q + V S + G T+G++G
Sbjct: 128 LREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQD 187
Query: 212 ---TELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
LG Q V L L QSD + + C L + LI KQ R GGL
Sbjct: 188 GIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGL 247
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPL 288
+D++AL + L++ +I GA LDV EP A PL
Sbjct: 248 VDEKALAQALKEGRIRGAALDVHESEPFSFAQGPL 282
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 83/216 (38%), Gaps = 41/216 (18%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A L + FSVG + + L + RGI V ++ +VAE IG I + RR
Sbjct: 77 AANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRS 136
Query: 180 NCIASGEW-----ALKQTQTVISDIIGLN--GSTVGIVGTELGAQL-------------- 218
+G W ++ + I+G GS VG + LG +
Sbjct: 137 VSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNV 196
Query: 219 ---VPLDTLCAQSDFIFVTCALTKDTEQLIG----RKQFRGGLL---------DQEALVE 262
LD L SD + + +K T +LI RK +G L D EAL +
Sbjct: 197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAK 256
Query: 263 FLRDKKIGGAGLDVMIPEPMPADH----PLVQLDNC 294
L++ + GA +DV EP PL L+N
Sbjct: 257 VLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENV 292
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 47/208 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
K L++I G D++ + GI V V S + A+ + + + RR H
Sbjct: 84 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA 143
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
+ G +++Q + V S + G T+GI+G
Sbjct: 144 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD 203
Query: 212 ---TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
LG Q V L L SD + + C L + LI KQ R GGL
Sbjct: 204 GVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 263
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPM 282
+D++AL + L++ +I GA LDV EP
Sbjct: 264 VDEKALAQALKEGRIRGAALDVHESEPF 291
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 44/300 (14%)
Query: 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
PKL++T + + +L ++IT ++ + R+ + + + A++ +VD
Sbjct: 3 PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDRVD 58
Query: 64 KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
+ L E L+VI G D+ +D +RG+ + V + + AE IGLA+ + +
Sbjct: 59 ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
+L+ F G + G+ TVG + A IGLA+A R Q
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGA-----IGLAMA--DRLQGWGAT 170
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
+ TQT LG + V L A SDFI + L DT
Sbjct: 171 LQYHARKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 214
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
L+ + RG ++D+ A++ L ++GG DV E AD P
Sbjct: 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRP 274
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 44/300 (14%)
Query: 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
PKL++T + + +L ++IT ++ + R+ + + + A++ +VD
Sbjct: 3 PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDRVD 58
Query: 64 KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
+ L E L+VI G D+ +D +RG+ + V + + AE IGLA+ + +
Sbjct: 59 ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
+L+ F G + G+ TVG + A IGLA+A R Q
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGA-----IGLAMA--DRLQGWGAT 170
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
+ TQT LG + V L A SDFI + L DT
Sbjct: 171 LQYHARKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 214
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
L+ + RG ++D+ A++ L ++GG DV E AD P
Sbjct: 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRP 274
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 47/219 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A + L I F++G + + LD RGI V ++ +VAE IG + + R + +
Sbjct: 66 AAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 125
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
N +A+G + + + IIG G+ +GI+ LG
Sbjct: 126 AKAHRGVGNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGXYVYFYDIENKLPL 182
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
Q+ L L SD + + T+ G K+ RG ++D A
Sbjct: 183 GNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPA 242
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDNC 294
L + L K + GA +DV EP P PL + DN
Sbjct: 243 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 281
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 86/218 (39%), Gaps = 47/218 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A + L I F +G + + LD RGI V ++ +VAE IG + + R + +
Sbjct: 71 AAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 130
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
N +A+G + + + IIG G+ +GI+ LG
Sbjct: 131 AKAHRGVWNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 187
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
Q+ L L SD + + T+ ++G K+ RG ++D A
Sbjct: 188 GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 247
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDN 293
L + L K + GA +DV EP P PL + DN
Sbjct: 248 LCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDN 285
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 199 IIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------- 250
++G++ S G + QL L+ + AQ+D I T++T L +F
Sbjct: 166 VLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAI 225
Query: 251 -----RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
RG +++ L+ LR K+G A LDV EP+PAD PL
Sbjct: 226 LFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPL 268
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 116/300 (38%), Gaps = 44/300 (14%)
Query: 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
PKL++T + + +L ++IT ++ + R+ + + + A +VD
Sbjct: 4 PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAXXAFXPDRVD 59
Query: 64 KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
+ L E L+VI G D+ +D +RG+ + V + + AE IGLA+ + +
Sbjct: 60 ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 118
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
+L+ F G + G+ TVG + A IGLA A R Q
Sbjct: 119 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGA-----IGLAXA--DRLQGWGAT 171
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
+ TQT LG + V L A SDFI + L DT
Sbjct: 172 LQYHAAKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 215
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
L+ + RG ++D+ A++ L ++GG DV E AD P
Sbjct: 216 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRP 275
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 84/218 (38%), Gaps = 47/218 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A + L I F +G + + LD RGI V ++ +VAE IG + + R + +
Sbjct: 72 AAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 131
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
N +A+G + + + IIG G+ +GI+ LG
Sbjct: 132 AKAHRGVWNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGXYVYFYDIENKLPL 188
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
Q+ L L SD + + T+ G K+ RG ++D A
Sbjct: 189 GNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPA 248
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDN 293
L + L K + GA +DV EP P PL + DN
Sbjct: 249 LCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDN 286
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 84/228 (36%), Gaps = 59/228 (25%)
Query: 123 NLKVIS-TFSVGHD---HLHLDQIKSRGIRV--GTVGPVSSDAVAEFNIGLAIAVSRRFQ 176
LK+IS T V D H+ L+ +G+ V G PV A AE L +A RR
Sbjct: 71 KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPV---APAELTWALVMAAQRRIP 127
Query: 177 QGHNCIASGEW---ALKQTQTVISDIIG--LNGSTVGIVGTELGAQLVP----------- 220
Q + G W LK T + IG L G T+GI G QLV
Sbjct: 128 QYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVL 187
Query: 221 ---------------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF--------- 250
D L QSD + V L +T +I
Sbjct: 188 VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALF 247
Query: 251 ----RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
R L+++ +V L + G A +DV EP+ H L++++NC
Sbjct: 248 VNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENC 295
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 82/218 (37%), Gaps = 40/218 (18%)
Query: 74 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVG 133
+K I T + G DH+ + K G + V S +A+AE + A+ + +T
Sbjct: 70 VKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTA 129
Query: 134 HDHLHLDQIK-SRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQT 192
+ +D S+ +R TVG V +G V+ + G GE +
Sbjct: 130 KKNFKVDAFMFSKEVRNCTVGVVG--------LGRIGRVAAQIFHGMGATVIGEDVFE-- 179
Query: 193 QTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-- 250
I G E V LD + +SD I + K+ ++ R
Sbjct: 180 ----------------IKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKK 223
Query: 251 -----------RGGLLDQEALVEFLRDKKIGGAGLDVM 277
RG L+D EA++E + K+GG G DV+
Sbjct: 224 MKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVL 261
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 49/233 (21%)
Query: 73 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSV 132
+LKV + G D L LD + RG+ A ++ + L ++V L S
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYS---- 135
Query: 133 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQ- 191
R R G D + L I S +GH A G A+++
Sbjct: 136 -----------ERAARTG-------DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKE 177
Query: 192 ----------TQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
+ V D+ + T +G E ++ L+ L +SD + V+ K T
Sbjct: 178 IARKAVHGLGMKLVYYDVAPADAETEKALGAE---RVDSLEELARRSDCVSVSVPYMKLT 234
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
LI F RG ++ Q+AL+ L+ K+ AGLDV EP
Sbjct: 235 HHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP 287
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 49/233 (21%)
Query: 73 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSV 132
+LKV + G D L LD + RG+ A ++ + L ++V L S
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYS---- 135
Query: 133 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQ- 191
R R G D + L I S +GH A G A+++
Sbjct: 136 -----------ERAARTG-------DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKE 177
Query: 192 ----------TQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
+ V D+ + T +G E ++ L+ L +SD + V+ K T
Sbjct: 178 IARKAVHGLGMKLVYYDVAPADAETEKALGAE---RVDSLEELARRSDCVSVSVPYMKLT 234
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
LI F RG ++ Q+AL+ L+ K+ AGLDV EP
Sbjct: 235 HHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP 287
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 49/233 (21%)
Query: 73 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSV 132
+LKV + G D L LD + RG+ A ++ + L ++V L S
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYS---- 135
Query: 133 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQ- 191
R R G D + L I S +GH A G A+++
Sbjct: 136 -----------ERAARTG-------DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKE 177
Query: 192 ----------TQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
+ V D+ + T +G E ++ L+ L +SD + V+ K T
Sbjct: 178 IARKAVHGLGMKLVYYDVAPADAETEKALGAE---RVDSLEELARRSDCVSVSVPYMKLT 234
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
LI F RG ++ Q+AL+ L+ K+ AGLDV EP
Sbjct: 235 HHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP 287
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 46/195 (23%)
Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 183
+K ++ +VG D++ + +K GIR+ V S A+AEF + + + R + +
Sbjct: 69 IKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQ 128
Query: 184 SGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELGAQL------------- 218
+G++ ++ T I +G TVG++GT GA++
Sbjct: 129 AGDY--EKAGTFIGKELG--QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHP 184
Query: 219 ----VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALV 261
V L+ L QSD I + + +I F R L+D +A++
Sbjct: 185 DFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAML 244
Query: 262 EFLRDKKIGGAGLDV 276
L+ K+ G G+D
Sbjct: 245 SNLKSGKLAGVGIDT 259
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 97 IRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS 156
+R G +G V + V+ LK I + G DHL + I G G +
Sbjct: 24 VRGGDLGNVEAALVSRITAEELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAGS-N 82
Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWA------LKQTQTVISDIIGLNGSTVGIV 210
+DAVAEF + L +A +R Q G++ L Q + V +G G+ VG +
Sbjct: 83 ADAVAEFALALLLAPYKRIIQYGEKXKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKI 142
Query: 211 GTELGAQLVPLDTLCAQSDFIFVTC 235
LGAQ+ + + F
Sbjct: 143 LAALGAQVRGFSRTPKEGPWRFTNS 167
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 189 LKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK 248
L QT+ +I +++ TVGI+ +EL QL D +V
Sbjct: 191 LNQTRVLI-NLLPNTAQTVGIINSELLDQL---------PDGAYVLNLA----------- 229
Query: 249 QFRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQ 290
RG + + L+ L K+ GA LDV EP+P + PL +
Sbjct: 230 --RGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWR 269
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 71 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA-----EFNIGLAIAVKNLK 125
GE +K I G D +H+D + R + T+GP+ D++ ++ L I + +
Sbjct: 26 GEQVKAIE--QAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQR 83
Query: 126 VISTFSVGHD------------HLH--LDQIKSRGIRVGTV 152
V G D HLH ++QIKS G + G V
Sbjct: 84 VPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVV 124
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 38/201 (18%)
Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
A+A + +S +VG D++ +D+ K G ++ V S +A+AE A V R+ ++
Sbjct: 65 ALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKR 124
Query: 178 GHNCIASGE--WALKQTQTVISDIIGLNGS-TVGIVGTEL----GAQLVP---------- 220
+A + WA + V ++G+ G+ +G V + GA+++
Sbjct: 125 MDEKMAKRDLRWAPTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELE 184
Query: 221 --------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
LD L Q+D I + +I K RG L+D +A
Sbjct: 185 KKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDA 244
Query: 260 LVEFLRDKKIGGAGLDVMIPE 280
++ L KI G +D E
Sbjct: 245 VIRGLDSGKIFGFVMDTYEDE 265
>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
Acetyl-Coa And Acetyl-Cys117
Length = 450
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 32 YPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
YP+ +G++ + ++ L C LCN +K++
Sbjct: 200 YPVVDGKLSQTCYLMALDSCYKHLCNKFEKLE 231
>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form
pdb|2F9A|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
F-244
pdb|2FA0|A Chain A, Hmg-coa Synthase From Brassica Juncea In Complex With
Hmg-coa And Covalently Bound To Hmg-coa
Length = 450
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 32 YPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
YP+ +G++ + ++ L C LCN +K++
Sbjct: 200 YPVVDGKLSQTCYLMALDSCYKHLCNKFEKLE 231
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 38/197 (19%)
Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
A+A + +S +VG D++ + + K G ++ V S +A+AE A + R+ +
Sbjct: 65 ALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKA 124
Query: 178 GHNCIASGE--WALKQTQTVISDIIGLNGS-TVGIVGTEL----GAQLV----------- 219
+A + WA + V ++G+ G+ +G V ++ GA+++
Sbjct: 125 MDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE 184
Query: 220 -------PLDTLCAQSDFIFVTC-------------ALTKDTEQLIGRKQFRGGLLDQEA 259
LD L Q+D I + ++ K + ++ RG L+D +A
Sbjct: 185 KKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDA 244
Query: 260 LVEFLRDKKIGGAGLDV 276
++ L KI G +DV
Sbjct: 245 VIRGLDSGKIFGYAMDV 261
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 38/197 (19%)
Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
A+A + +S +VG D++ + + K G ++ V S +A+AE A + R+ +
Sbjct: 65 ALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKA 124
Query: 178 GHNCIASGE--WALKQTQTVISDIIGLNGS-TVGIVGTEL----GAQLV----------- 219
+A + WA + V ++G+ G+ +G V ++ GA+++
Sbjct: 125 MDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE 184
Query: 220 -------PLDTLCAQSDFIFVTC-------------ALTKDTEQLIGRKQFRGGLLDQEA 259
LD L Q+D I + ++ K + ++ RG L+D +A
Sbjct: 185 KKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDA 244
Query: 260 LVEFLRDKKIGGAGLDV 276
++ L KI G +DV
Sbjct: 245 VIRGLDSGKIFGYAMDV 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,736,048
Number of Sequences: 62578
Number of extensions: 350965
Number of successful extensions: 1013
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 123
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)