Query psy5259
Match_columns 294
No_of_seqs 148 out of 1474
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:49:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15409 bifunctional glyoxyla 100.0 2E-51 4.4E-56 380.7 23.3 234 3-294 2-280 (323)
2 COG0111 SerA Phosphoglycerate 100.0 1.3E-50 2.8E-55 374.3 21.1 232 1-294 1-277 (324)
3 COG1052 LdhA Lactate dehydroge 100.0 5.6E-50 1.2E-54 369.8 21.8 234 2-293 1-279 (324)
4 PRK08410 2-hydroxyacid dehydro 100.0 3.8E-49 8.3E-54 364.2 23.4 230 5-294 2-278 (311)
5 KOG0068|consensus 100.0 5.9E-49 1.3E-53 353.1 17.5 228 5-294 8-282 (406)
6 PRK13243 glyoxylate reductase; 100.0 4.5E-48 9.9E-53 360.1 23.4 235 2-294 1-283 (333)
7 PRK11790 D-3-phosphoglycerate 100.0 1.6E-47 3.4E-52 365.1 23.2 232 1-294 8-287 (409)
8 PRK06487 glycerate dehydrogena 100.0 1.7E-47 3.6E-52 354.1 22.7 232 5-294 2-279 (317)
9 PRK06932 glycerate dehydrogena 100.0 1.9E-47 4.1E-52 353.2 21.7 202 39-294 33-281 (314)
10 PLN02306 hydroxypyruvate reduc 100.0 4.9E-46 1.1E-50 351.2 24.2 237 2-294 14-315 (386)
11 PLN02928 oxidoreductase family 100.0 5.1E-46 1.1E-50 347.9 22.8 227 1-294 16-306 (347)
12 PLN03139 formate dehydrogenase 100.0 2.7E-45 5.9E-50 345.3 20.6 219 20-294 68-335 (386)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 5.9E-45 1.3E-49 357.6 22.9 226 5-294 1-272 (525)
14 PRK13581 D-3-phosphoglycerate 100.0 7.7E-45 1.7E-49 356.9 23.0 227 4-294 1-273 (526)
15 PRK07574 formate dehydrogenase 100.0 5.8E-45 1.2E-49 343.3 20.3 218 21-294 62-328 (385)
16 PRK12480 D-lactate dehydrogena 100.0 2.7E-42 5.8E-47 320.8 18.5 232 4-294 2-291 (330)
17 PRK08605 D-lactate dehydrogena 100.0 3.6E-42 7.7E-47 320.6 19.2 234 1-294 1-293 (332)
18 KOG0069|consensus 100.0 4.2E-42 9.1E-47 314.8 15.3 202 39-294 49-296 (336)
19 PRK15438 erythronate-4-phospha 100.0 1.9E-40 4.1E-45 311.5 21.1 204 4-293 1-249 (378)
20 PRK00257 erythronate-4-phospha 100.0 4.5E-39 9.8E-44 303.0 20.9 204 4-294 1-249 (381)
21 PRK15469 ghrA bifunctional gly 100.0 6E-39 1.3E-43 296.1 19.2 221 5-294 2-270 (312)
22 PRK06436 glycerate dehydrogena 100.0 3.2E-37 6.9E-42 283.2 20.3 205 5-294 2-250 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 8.3E-33 1.8E-37 236.2 6.9 126 165-294 1-171 (178)
24 KOG0067|consensus 99.8 4.2E-19 9.1E-24 162.3 11.2 200 19-273 45-292 (435)
25 PF00389 2-Hacid_dh: D-isomer 99.8 6.3E-18 1.4E-22 137.4 10.6 101 6-114 1-101 (133)
26 PF00389 2-Hacid_dh: D-isomer 99.0 7.5E-10 1.6E-14 89.8 8.2 45 120-164 57-101 (133)
27 PTZ00075 Adenosylhomocysteinas 99.0 9.7E-10 2.1E-14 106.1 9.7 125 130-284 198-368 (476)
28 TIGR02853 spore_dpaA dipicolin 98.8 9.2E-09 2E-13 94.3 5.5 87 126-238 92-220 (287)
29 PRK08306 dipicolinate synthase 97.8 0.00016 3.5E-09 66.6 10.6 57 155-237 129-220 (296)
30 PLN02494 adenosylhomocysteinas 97.8 1.5E-05 3.2E-10 77.3 3.6 76 200-280 250-373 (477)
31 PRK13403 ketol-acid reductoiso 97.7 1.3E-05 2.8E-10 74.2 2.1 49 200-249 12-92 (335)
32 TIGR00936 ahcY adenosylhomocys 97.4 0.00016 3.5E-09 69.3 4.4 76 200-279 191-312 (406)
33 COG1052 LdhA Lactate dehydroge 97.0 0.002 4.3E-08 60.2 7.6 95 44-171 15-110 (324)
34 PRK12480 D-lactate dehydrogena 96.9 0.0025 5.3E-08 59.7 7.0 49 120-172 64-114 (330)
35 PRK15409 bifunctional glyoxyla 96.7 0.0043 9.2E-08 57.9 6.7 49 120-172 63-111 (323)
36 PLN03139 formate dehydrogenase 96.2 0.012 2.5E-07 56.4 6.8 48 120-171 118-165 (386)
37 PRK08410 2-hydroxyacid dehydro 96.2 0.0055 1.2E-07 56.9 4.1 48 120-172 60-108 (311)
38 PRK13243 glyoxylate reductase; 96.1 0.02 4.3E-07 53.7 7.5 49 120-172 64-112 (333)
39 PRK06932 glycerate dehydrogena 95.9 0.0097 2.1E-07 55.3 4.6 49 120-172 62-110 (314)
40 PRK06487 glycerate dehydrogena 95.9 0.0086 1.9E-07 55.7 4.2 49 120-172 63-111 (317)
41 PRK08605 D-lactate dehydrogena 95.8 0.021 4.4E-07 53.6 6.2 47 120-171 64-113 (332)
42 PRK05476 S-adenosyl-L-homocyst 95.7 0.058 1.3E-06 52.2 8.8 98 130-250 156-286 (425)
43 PRK11790 D-3-phosphoglycerate 95.4 0.037 8.1E-07 53.3 6.7 48 120-172 72-120 (409)
44 PRK07574 formate dehydrogenase 95.3 0.051 1.1E-06 52.0 7.2 50 119-172 110-159 (385)
45 PRK05479 ketol-acid reductoiso 95.3 0.0082 1.8E-07 56.1 1.6 46 200-246 13-91 (330)
46 PRK05225 ketol-acid reductoiso 95.2 0.015 3.2E-07 56.4 3.1 59 200-271 32-128 (487)
47 PLN02928 oxidoreductase family 95.1 0.025 5.4E-07 53.4 4.2 50 120-172 79-130 (347)
48 KOG0069|consensus 95.1 0.016 3.5E-07 54.1 2.8 64 115-185 75-139 (336)
49 PRK13581 D-3-phosphoglycerate 95.0 0.061 1.3E-06 53.6 7.0 48 120-172 61-109 (526)
50 TIGR01327 PGDH D-3-phosphoglyc 95.0 0.055 1.2E-06 53.9 6.5 49 120-172 59-107 (525)
51 COG0111 SerA Phosphoglycerate 95.0 0.075 1.6E-06 49.7 6.9 68 92-171 43-110 (324)
52 KOG0067|consensus 94.0 0.044 9.6E-07 51.5 3.0 54 75-128 97-151 (435)
53 PRK15469 ghrA bifunctional gly 93.9 0.04 8.8E-07 51.2 2.6 76 92-167 80-158 (312)
54 PF07991 IlvN: Acetohydroxy ac 93.9 0.049 1.1E-06 45.6 2.8 35 202-236 2-69 (165)
55 PRK00257 erythronate-4-phospha 93.8 0.12 2.7E-06 49.3 5.7 29 121-149 56-84 (381)
56 TIGR02853 spore_dpaA dipicolin 93.6 0.08 1.7E-06 48.6 4.0 57 61-121 81-144 (287)
57 PRK15438 erythronate-4-phospha 93.0 0.12 2.5E-06 49.4 4.2 30 120-149 55-84 (378)
58 TIGR00465 ilvC ketol-acid redu 92.4 0.15 3.2E-06 47.5 3.9 23 216-238 48-70 (314)
59 PRK02261 methylaspartate mutas 92.4 4.2 9.1E-05 33.0 12.0 55 1-58 1-62 (137)
60 PRK14189 bifunctional 5,10-met 91.7 0.22 4.7E-06 45.7 4.0 52 200-255 154-226 (285)
61 COG0059 IlvC Ketol-acid reduct 91.3 0.22 4.9E-06 45.8 3.7 61 200-272 14-107 (338)
62 PLN02306 hydroxypyruvate reduc 89.1 0.29 6.3E-06 46.9 2.7 48 120-172 81-131 (386)
63 PRK09189 uroporphyrinogen-III 89.0 0.88 1.9E-05 40.2 5.6 142 4-155 1-150 (240)
64 COG2185 Sbm Methylmalonyl-CoA 88.9 10 0.00022 31.1 11.2 121 1-169 10-138 (143)
65 cd05212 NAD_bind_m-THF_DH_Cycl 88.8 0.59 1.3E-05 38.3 3.9 53 200-256 24-97 (140)
66 PRK06436 glycerate dehydrogena 88.7 0.26 5.7E-06 45.6 2.0 22 121-142 47-68 (303)
67 cd00401 AdoHcyase S-adenosyl-L 88.4 2 4.3E-05 41.5 7.9 47 200-250 198-276 (413)
68 KOG0068|consensus 88.4 0.4 8.6E-06 44.8 2.9 28 84-111 81-108 (406)
69 PRK13302 putative L-aspartate 86.8 0.78 1.7E-05 41.7 3.9 51 218-270 58-118 (271)
70 TIGR01505 tartro_sem_red 2-hyd 86.0 0.99 2.1E-05 41.1 4.2 53 218-270 46-113 (291)
71 PRK05752 uroporphyrinogen-III 86.0 1 2.3E-05 40.2 4.2 149 1-155 1-162 (255)
72 TIGR00640 acid_CoA_mut_C methy 85.4 18 0.00038 29.2 11.3 118 3-167 2-126 (132)
73 PRK06975 bifunctional uroporph 85.2 2.4 5.3E-05 43.4 7.0 150 1-156 1-172 (656)
74 cd01075 NAD_bind_Leu_Phe_Val_D 85.1 1.2 2.7E-05 38.4 4.2 13 200-212 24-36 (200)
75 PRK11559 garR tartronate semia 84.9 1.4 3.1E-05 40.1 4.7 63 219-281 50-127 (296)
76 PF03446 NAD_binding_2: NAD bi 84.8 0.38 8.3E-06 40.0 0.8 29 219-247 49-77 (163)
77 PRK14179 bifunctional 5,10-met 84.1 1.5 3.2E-05 40.3 4.3 51 200-254 154-225 (284)
78 PF02882 THF_DHG_CYH_C: Tetrah 84.0 1.7 3.7E-05 36.4 4.3 47 200-250 32-98 (160)
79 PRK14194 bifunctional 5,10-met 83.9 1.5 3.3E-05 40.5 4.3 47 200-250 155-221 (301)
80 PF00670 AdoHcyase_NAD: S-aden 81.6 1.4 3.1E-05 36.9 3.0 47 200-250 19-97 (162)
81 cd01080 NAD_bind_m-THF_DH_Cycl 80.6 1.6 3.4E-05 36.9 3.0 47 200-250 40-106 (168)
82 PLN02712 arogenate dehydrogena 80.0 1.8 4E-05 44.4 3.7 47 200-247 365-444 (667)
83 PF10087 DUF2325: Uncharacteri 79.4 14 0.00029 27.9 7.6 87 5-112 1-91 (97)
84 PRK14188 bifunctional 5,10-met 79.3 2.7 5.9E-05 38.8 4.3 52 200-255 154-226 (296)
85 PRK14186 bifunctional 5,10-met 78.8 2.8 6.2E-05 38.7 4.2 52 200-255 154-226 (297)
86 PRK14170 bifunctional 5,10-met 78.8 2.8 6.1E-05 38.4 4.2 47 200-250 153-219 (284)
87 PLN02516 methylenetetrahydrofo 78.8 2.9 6.2E-05 38.7 4.2 52 200-255 163-235 (299)
88 PRK08811 uroporphyrinogen-III 78.3 4 8.6E-05 37.0 5.0 143 4-155 19-170 (266)
89 PRK14177 bifunctional 5,10-met 78.2 3.1 6.7E-05 38.2 4.3 47 200-250 155-221 (284)
90 PRK14178 bifunctional 5,10-met 78.0 2.2 4.8E-05 39.0 3.3 52 200-255 148-220 (279)
91 PRK14169 bifunctional 5,10-met 78.0 3.1 6.7E-05 38.1 4.2 52 200-255 152-224 (282)
92 PRK14166 bifunctional 5,10-met 77.6 3.2 7E-05 38.0 4.2 52 200-255 153-225 (282)
93 PRK14175 bifunctional 5,10-met 77.3 2.6 5.7E-05 38.7 3.5 47 200-250 154-220 (286)
94 PRK14173 bifunctional 5,10-met 77.1 3.5 7.5E-05 37.9 4.2 52 200-255 151-223 (287)
95 PRK14172 bifunctional 5,10-met 77.0 3.4 7.5E-05 37.7 4.2 52 200-255 154-226 (278)
96 PRK14182 bifunctional 5,10-met 76.9 3.6 7.8E-05 37.7 4.3 52 200-255 153-225 (282)
97 PRK14187 bifunctional 5,10-met 76.7 3.5 7.7E-05 38.0 4.2 52 200-255 156-228 (294)
98 PRK10792 bifunctional 5,10-met 76.6 2.8 6E-05 38.5 3.5 51 200-254 155-226 (285)
99 PRK15461 NADH-dependent gamma- 76.4 4.2 9.1E-05 37.3 4.7 53 218-270 48-115 (296)
100 PRK14180 bifunctional 5,10-met 75.8 3.6 7.8E-05 37.7 4.0 47 200-250 154-220 (282)
101 PF03807 F420_oxidored: NADP o 75.5 3.1 6.7E-05 30.9 3.0 18 220-237 54-71 (96)
102 PLN02616 tetrahydrofolate dehy 75.5 3.8 8.3E-05 38.8 4.2 52 200-255 227-299 (364)
103 TIGR02371 ala_DH_arch alanine 75.3 3.1 6.6E-05 38.8 3.5 30 218-250 183-212 (325)
104 PLN02897 tetrahydrofolate dehy 75.0 3.8 8.3E-05 38.5 4.0 52 200-255 210-282 (345)
105 PRK14174 bifunctional 5,10-met 74.8 3.5 7.5E-05 38.1 3.6 52 200-255 155-231 (295)
106 PRK14171 bifunctional 5,10-met 74.7 4.4 9.6E-05 37.2 4.3 51 200-254 155-226 (288)
107 PRK14190 bifunctional 5,10-met 74.5 3.4 7.5E-05 37.9 3.5 52 200-255 154-226 (284)
108 PF10727 Rossmann-like: Rossma 73.1 3.4 7.4E-05 33.2 2.8 21 218-238 59-79 (127)
109 PRK14183 bifunctional 5,10-met 72.9 5.2 0.00011 36.6 4.3 47 200-250 153-219 (281)
110 cd01079 NAD_bind_m-THF_DH NAD 70.8 4.7 0.0001 34.9 3.3 31 221-255 120-152 (197)
111 PF01488 Shikimate_DH: Shikima 70.4 3.7 8E-05 33.0 2.5 57 219-293 67-123 (135)
112 PRK14193 bifunctional 5,10-met 69.5 6.6 0.00014 36.0 4.2 52 200-255 154-228 (284)
113 PRK14191 bifunctional 5,10-met 69.0 4.9 0.00011 36.9 3.2 52 200-255 153-225 (285)
114 PRK14176 bifunctional 5,10-met 68.9 6.6 0.00014 36.1 4.0 52 200-255 160-232 (287)
115 PRK14181 bifunctional 5,10-met 68.6 6.7 0.00014 36.0 4.0 52 200-255 149-225 (287)
116 PRK11199 tyrA bifunctional cho 68.2 15 0.00033 34.9 6.5 25 220-245 135-159 (374)
117 COG2423 Predicted ornithine cy 67.3 6.4 0.00014 36.9 3.7 29 219-250 187-215 (330)
118 PRK14184 bifunctional 5,10-met 66.8 7.4 0.00016 35.8 3.9 52 200-255 153-229 (286)
119 PRK14192 bifunctional 5,10-met 66.4 7 0.00015 35.8 3.7 47 200-250 155-221 (283)
120 PRK14619 NAD(P)H-dependent gly 65.9 8.2 0.00018 35.5 4.1 26 219-245 39-64 (308)
121 PRK08306 dipicolinate synthase 65.4 19 0.00042 33.1 6.4 65 203-268 24-95 (296)
122 PRK12490 6-phosphogluconate de 64.0 11 0.00024 34.4 4.6 55 219-275 48-117 (299)
123 TIGR01035 hemA glutamyl-tRNA r 63.8 20 0.00044 34.6 6.5 45 220-277 233-277 (417)
124 PRK07340 ornithine cyclodeamin 63.3 10 0.00022 35.0 4.2 26 219-247 180-205 (304)
125 PRK14168 bifunctional 5,10-met 62.8 10 0.00022 35.0 4.0 52 200-255 157-233 (297)
126 COG1587 HemD Uroporphyrinogen- 62.7 19 0.00041 32.0 5.7 146 3-158 1-158 (248)
127 PRK08818 prephenate dehydrogen 62.2 12 0.00026 35.7 4.5 20 219-238 43-62 (370)
128 PRK14185 bifunctional 5,10-met 61.9 11 0.00024 34.7 4.1 47 200-250 153-223 (293)
129 PRK08618 ornithine cyclodeamin 61.1 9.9 0.00021 35.4 3.8 29 218-250 183-211 (325)
130 PF04016 DUF364: Domain of unk 60.6 12 0.00027 30.6 3.8 17 220-236 55-71 (147)
131 TIGR01501 MthylAspMutase methy 60.2 91 0.002 25.2 11.4 53 3-58 1-60 (134)
132 PRK08291 ectoine utilization p 60.1 9.8 0.00021 35.5 3.5 28 219-249 189-216 (330)
133 cd05212 NAD_bind_m-THF_DH_Cycl 59.8 94 0.002 25.3 9.4 61 3-68 28-91 (140)
134 cd01065 NAD_bind_Shikimate_DH 59.1 12 0.00026 30.1 3.5 23 218-240 72-94 (155)
135 PRK05928 hemD uroporphyrinogen 58.8 14 0.00031 32.0 4.2 147 3-157 1-159 (249)
136 cd00757 ThiF_MoeB_HesA_family 57.6 2.7 5.8E-05 37.0 -0.7 30 220-250 104-133 (228)
137 PRK14167 bifunctional 5,10-met 57.6 15 0.00031 34.0 4.1 52 200-255 153-229 (297)
138 COG0800 Eda 2-keto-3-deoxy-6-p 57.2 26 0.00056 30.7 5.4 155 26-189 38-197 (211)
139 cd02072 Glm_B12_BD B12 binding 55.3 1.1E+02 0.0024 24.6 8.9 30 26-58 27-58 (128)
140 TIGR00518 alaDH alanine dehydr 55.1 9.7 0.00021 36.2 2.6 31 220-250 223-254 (370)
141 PRK06545 prephenate dehydrogen 55.0 15 0.00032 34.7 3.8 27 219-246 52-78 (359)
142 COG1004 Ugd Predicted UDP-gluc 54.3 15 0.00032 35.3 3.7 18 219-236 368-385 (414)
143 TIGR02356 adenyl_thiF thiazole 54.3 4 8.7E-05 35.3 -0.1 27 221-248 105-131 (202)
144 PRK06407 ornithine cyclodeamin 54.2 13 0.00028 34.4 3.2 29 219-250 174-202 (301)
145 PRK05690 molybdopterin biosynt 54.2 6.1 0.00013 35.3 1.1 28 221-249 116-143 (245)
146 PRK06141 ornithine cyclodeamin 53.7 15 0.00032 34.0 3.6 29 219-250 181-209 (314)
147 PRK07502 cyclohexadienyl dehyd 53.3 18 0.0004 33.1 4.1 20 219-238 58-77 (307)
148 COG0373 HemA Glutamyl-tRNA red 53.1 15 0.00031 35.6 3.4 63 201-277 175-274 (414)
149 PF02423 OCD_Mu_crystall: Orni 52.9 18 0.00038 33.5 3.9 31 219-250 184-214 (313)
150 PRK06823 ornithine cyclodeamin 52.5 14 0.0003 34.3 3.2 29 219-250 184-212 (315)
151 TIGR02992 ectoine_eutC ectoine 52.4 16 0.00036 33.9 3.7 29 219-250 186-214 (326)
152 COG0190 FolD 5,10-methylene-te 51.2 27 0.00059 32.0 4.7 47 200-250 152-218 (283)
153 PRK12491 pyrroline-5-carboxyla 50.8 16 0.00036 33.0 3.3 25 219-244 55-79 (272)
154 PRK09599 6-phosphogluconate de 50.5 28 0.0006 31.9 4.8 51 220-270 49-114 (301)
155 PRK06046 alanine dehydrogenase 49.3 18 0.00038 33.7 3.3 28 219-250 186-213 (326)
156 cd01080 NAD_bind_m-THF_DH_Cycl 48.7 1.6E+02 0.0034 24.6 8.8 60 3-68 44-107 (168)
157 PRK11064 wecC UDP-N-acetyl-D-m 48.2 24 0.00051 34.1 4.1 15 200-214 316-330 (415)
158 COG2085 Predicted dinucleotide 48.1 23 0.0005 31.0 3.6 23 217-239 50-72 (211)
159 PF01408 GFO_IDH_MocA: Oxidore 48.0 20 0.00043 27.4 3.0 21 217-237 50-72 (120)
160 COG2084 MmsB 3-hydroxyisobutyr 48.0 14 0.00031 33.9 2.5 28 219-246 49-76 (286)
161 PF05222 AlaDh_PNT_N: Alanine 47.7 37 0.00081 27.4 4.6 65 215-279 51-119 (136)
162 COG2875 CobM Precorrin-4 methy 46.9 54 0.0012 29.3 5.7 94 47-167 25-124 (254)
163 PF03698 UPF0180: Uncharacteri 46.8 1E+02 0.0022 22.7 6.3 72 4-113 2-74 (80)
164 PRK07634 pyrroline-5-carboxyla 46.5 26 0.00057 30.6 3.9 20 219-238 58-77 (245)
165 KOG0409|consensus 46.3 19 0.00041 33.4 2.9 45 200-244 31-108 (327)
166 COG0771 MurD UDP-N-acetylmuram 45.6 1.5E+02 0.0032 29.2 9.1 92 3-102 7-99 (448)
167 COG0313 Predicted methyltransf 44.5 51 0.0011 30.1 5.3 92 43-161 23-121 (275)
168 PLN02858 fructose-bisphosphate 44.2 18 0.00039 40.5 2.9 27 219-245 372-398 (1378)
169 TIGR03026 NDP-sugDHase nucleot 44.0 28 0.00061 33.4 3.9 12 201-212 310-321 (411)
170 COG0677 WecC UDP-N-acetyl-D-ma 43.4 28 0.0006 33.6 3.6 66 223-291 80-173 (436)
171 TIGR02354 thiF_fam2 thiamine b 43.3 14 0.0003 32.0 1.5 29 220-249 103-131 (200)
172 PLN02256 arogenate dehydrogena 43.3 31 0.00066 31.9 3.9 28 220-248 84-112 (304)
173 PRK07589 ornithine cyclodeamin 43.0 30 0.00065 32.6 3.9 31 219-250 185-215 (346)
174 PRK14175 bifunctional 5,10-met 42.5 1.8E+02 0.0039 26.7 8.7 59 4-68 159-221 (286)
175 PRK14191 bifunctional 5,10-met 42.2 2.7E+02 0.0058 25.6 9.7 59 4-68 158-220 (285)
176 PF06345 Drf_DAD: DRF Autoregu 41.9 26 0.00057 17.0 1.7 12 257-268 3-14 (15)
177 PRK14178 bifunctional 5,10-met 41.9 2.6E+02 0.0057 25.6 9.6 60 4-68 153-215 (279)
178 PRK15059 tartronate semialdehy 41.8 24 0.00052 32.3 2.9 27 219-245 47-73 (292)
179 PRK12475 thiamine/molybdopteri 41.2 14 0.0003 34.8 1.2 28 220-248 109-136 (338)
180 COG1804 CaiB Predicted acyl-Co 41.1 1.3E+02 0.0028 29.1 7.8 47 39-85 79-131 (396)
181 PRK05600 thiamine biosynthesis 41.0 10 0.00023 36.1 0.4 30 220-250 124-153 (370)
182 PRK14176 bifunctional 5,10-met 40.5 2.3E+02 0.0051 26.0 9.1 60 4-68 165-227 (287)
183 PRK05597 molybdopterin biosynt 39.0 12 0.00025 35.5 0.4 27 221-248 112-138 (355)
184 PRK05472 redox-sensing transcr 38.9 15 0.00033 31.8 1.1 49 218-266 135-201 (213)
185 PRK00045 hemA glutamyl-tRNA re 38.8 1E+02 0.0022 29.8 6.9 46 220-278 235-281 (423)
186 PRK06552 keto-hydroxyglutarate 38.6 1.8E+02 0.0038 25.4 7.8 109 52-167 67-176 (213)
187 PRK10792 bifunctional 5,10-met 38.5 2E+02 0.0044 26.4 8.4 59 4-68 160-222 (285)
188 PTZ00075 Adenosylhomocysteinas 37.6 39 0.00085 33.4 3.8 83 72-167 189-276 (476)
189 PRK03892 ribonuclease P protei 37.2 39 0.00085 29.6 3.3 55 44-102 76-136 (216)
190 cd02071 MM_CoA_mut_B12_BD meth 36.5 2E+02 0.0044 22.3 8.6 32 26-60 27-60 (122)
191 PRK06476 pyrroline-5-carboxyla 35.7 41 0.00088 29.9 3.4 47 219-266 53-107 (258)
192 PRK07417 arogenate dehydrogena 35.4 40 0.00088 30.4 3.4 16 223-238 53-68 (279)
193 PLN02516 methylenetetrahydrofo 35.4 3.7E+02 0.0079 24.9 10.4 60 4-68 168-230 (299)
194 PRK07679 pyrroline-5-carboxyla 35.2 52 0.0011 29.6 4.0 19 219-237 57-75 (279)
195 COG0287 TyrA Prephenate dehydr 34.8 41 0.0009 30.7 3.3 24 222-246 59-82 (279)
196 COG0345 ProC Pyrroline-5-carbo 34.7 48 0.001 30.1 3.7 19 218-236 53-71 (266)
197 COG0190 FolD 5,10-methylene-te 34.7 2.7E+02 0.0058 25.6 8.4 104 5-161 158-265 (283)
198 PF02882 THF_DHG_CYH_C: Tetrah 34.5 2.7E+02 0.0059 23.2 9.0 59 4-68 37-99 (160)
199 PRK13940 glutamyl-tRNA reducta 34.3 34 0.00074 33.1 2.8 26 220-248 235-260 (414)
200 PRK01368 murD UDP-N-acetylmura 34.0 2.4E+02 0.0052 27.5 8.7 86 4-102 7-93 (454)
201 PRK07411 hypothetical protein; 33.9 15 0.00032 35.2 0.3 30 220-250 121-150 (390)
202 PRK14180 bifunctional 5,10-met 33.3 3.9E+02 0.0083 24.5 9.4 59 4-68 159-221 (282)
203 PF00670 AdoHcyase_NAD: S-aden 32.9 2.9E+02 0.0064 23.1 8.5 55 47-102 75-131 (162)
204 cd06578 HemD Uroporphyrinogen- 32.7 67 0.0015 27.4 4.2 142 6-155 1-154 (239)
205 PLN00203 glutamyl-tRNA reducta 32.6 41 0.00088 33.6 3.1 17 220-236 322-338 (519)
206 PLN02712 arogenate dehydrogena 32.5 50 0.0011 34.1 3.8 28 220-248 100-128 (667)
207 PRK14169 bifunctional 5,10-met 32.1 3.9E+02 0.0085 24.5 9.2 59 4-68 157-219 (282)
208 PLN02858 fructose-bisphosphate 31.9 40 0.00087 37.8 3.2 27 219-245 52-78 (1378)
209 PRK14170 bifunctional 5,10-met 31.8 4.1E+02 0.0088 24.4 9.2 59 4-68 158-220 (284)
210 COG0499 SAM1 S-adenosylhomocys 31.7 39 0.00084 32.2 2.6 46 201-250 206-283 (420)
211 PRK14106 murD UDP-N-acetylmura 31.7 2.1E+02 0.0045 27.5 7.9 92 2-102 4-98 (450)
212 PTZ00431 pyrroline carboxylate 31.0 59 0.0013 29.0 3.6 18 220-237 50-67 (260)
213 PRK13304 L-aspartate dehydroge 30.9 60 0.0013 29.2 3.7 20 218-237 52-71 (265)
214 PRK14187 bifunctional 5,10-met 30.8 4.3E+02 0.0094 24.4 9.2 59 4-68 161-223 (294)
215 PRK06444 prephenate dehydrogen 30.6 47 0.001 28.7 2.8 20 225-245 29-48 (197)
216 COG0673 MviM Predicted dehydro 30.2 63 0.0014 29.5 3.8 38 213-250 49-100 (342)
217 PRK14192 bifunctional 5,10-met 30.0 3.7E+02 0.008 24.5 8.7 59 4-68 160-222 (283)
218 PF03721 UDPG_MGDP_dh_N: UDP-g 29.7 31 0.00068 29.3 1.5 29 219-247 68-96 (185)
219 cd01492 Aos1_SUMO Ubiquitin ac 29.3 26 0.00056 30.1 1.0 13 200-212 17-29 (197)
220 PRK08223 hypothetical protein; 29.2 40 0.00087 31.0 2.2 31 219-249 109-140 (287)
221 TIGR01851 argC_other N-acetyl- 28.9 70 0.0015 29.8 3.8 20 219-238 41-60 (310)
222 PRK08507 prephenate dehydrogen 28.7 73 0.0016 28.6 3.9 20 219-239 51-70 (275)
223 PRK14994 SAM-dependent 16S rib 28.2 1.5E+02 0.0034 27.1 5.9 95 45-166 32-133 (287)
224 TIGR00872 gnd_rel 6-phosphoglu 28.2 34 0.00074 31.2 1.6 22 223-245 55-76 (298)
225 PRK14177 bifunctional 5,10-met 28.0 4.8E+02 0.01 24.0 9.5 60 4-68 160-222 (284)
226 PLN02897 tetrahydrofolate dehy 28.0 5.3E+02 0.011 24.4 9.7 59 4-68 215-277 (345)
227 PRK08655 prephenate dehydrogen 27.6 71 0.0015 31.1 3.8 25 220-245 51-75 (437)
228 cd05213 NAD_bind_Glutamyl_tRNA 27.5 54 0.0012 30.2 2.8 19 220-238 231-249 (311)
229 PRK07239 bifunctional uroporph 27.2 3.3E+02 0.0072 25.6 8.3 144 3-156 11-180 (381)
230 PLN02350 phosphogluconate dehy 27.0 68 0.0015 31.9 3.5 64 218-281 60-138 (493)
231 PRK14573 bifunctional D-alanyl 26.5 3.1E+02 0.0067 28.9 8.5 89 1-102 1-93 (809)
232 PRK14806 bifunctional cyclohex 26.3 71 0.0015 33.1 3.8 20 219-238 55-74 (735)
233 PLN02545 3-hydroxybutyryl-CoA 26.2 47 0.001 30.1 2.2 44 223-266 79-133 (295)
234 PRK14194 bifunctional 5,10-met 25.9 2.8E+02 0.0061 25.7 7.1 60 4-68 160-222 (301)
235 PRK09310 aroDE bifunctional 3- 25.7 90 0.002 30.8 4.2 15 225-239 388-402 (477)
236 PRK14186 bifunctional 5,10-met 25.7 5.4E+02 0.012 23.8 9.3 59 4-68 159-221 (297)
237 COG0002 ArgC Acetylglutamate s 25.4 83 0.0018 29.8 3.6 20 220-239 62-82 (349)
238 PF03435 Saccharop_dh: Sacchar 24.8 1.4E+02 0.0031 28.0 5.3 113 5-134 25-157 (386)
239 PRK08762 molybdopterin biosynt 24.3 48 0.001 31.5 1.9 27 221-248 219-245 (376)
240 TIGR01724 hmd_rel H2-forming N 24.3 57 0.0012 30.7 2.3 47 219-266 73-129 (341)
241 PRK07066 3-hydroxybutyryl-CoA 24.2 74 0.0016 29.7 3.1 60 219-279 75-145 (321)
242 PRK14166 bifunctional 5,10-met 24.2 5.6E+02 0.012 23.5 10.2 60 4-68 158-220 (282)
243 PRK00421 murC UDP-N-acetylmura 24.2 3.9E+02 0.0085 25.8 8.3 88 4-102 8-96 (461)
244 PRK14851 hypothetical protein; 24.1 47 0.001 34.4 1.9 13 200-212 39-51 (679)
245 PRK14172 bifunctional 5,10-met 24.0 5.6E+02 0.012 23.4 9.2 59 4-68 159-221 (278)
246 PRK06015 keto-hydroxyglutarate 23.4 2.8E+02 0.006 24.1 6.3 101 60-166 62-164 (201)
247 PRK14171 bifunctional 5,10-met 23.3 5.9E+02 0.013 23.4 9.5 59 4-68 160-222 (288)
248 TIGR01546 GAPDH-II_archae glyc 23.3 46 0.00099 31.3 1.5 28 220-250 68-95 (333)
249 COG0677 WecC UDP-N-acetyl-D-ma 23.1 1E+02 0.0022 29.9 3.7 20 219-238 380-399 (436)
250 PLN02616 tetrahydrofolate dehy 23.0 6.7E+02 0.014 24.0 9.7 72 4-87 232-307 (364)
251 PF01210 NAD_Gly3P_dh_N: NAD-d 23.0 59 0.0013 26.6 2.0 21 219-239 61-81 (157)
252 PRK14182 bifunctional 5,10-met 22.9 5.9E+02 0.013 23.3 9.4 59 4-68 158-220 (282)
253 TIGR01921 DAP-DH diaminopimela 22.8 1E+02 0.0022 28.8 3.7 19 219-237 52-70 (324)
254 TIGR00334 5S_RNA_mat_M5 ribonu 22.8 2.5E+02 0.0055 23.8 5.7 38 28-70 4-41 (174)
255 PF02515 CoA_transf_3: CoA-tra 22.3 1.6E+02 0.0035 24.9 4.6 47 39-85 9-61 (191)
256 PRK11863 N-acetyl-gamma-glutam 21.8 1E+02 0.0022 28.7 3.5 19 220-238 43-61 (313)
257 PRK14982 acyl-ACP reductase; P 21.6 89 0.0019 29.5 3.1 17 220-236 208-224 (340)
258 PTZ00142 6-phosphogluconate de 21.5 99 0.0021 30.5 3.5 63 218-280 54-131 (470)
259 PRK11064 wecC UDP-N-acetyl-D-m 21.3 1.2E+02 0.0026 29.3 4.0 13 226-238 74-86 (415)
260 PRK14168 bifunctional 5,10-met 21.1 6.6E+02 0.014 23.2 10.3 59 4-68 162-228 (297)
261 PRK14185 bifunctional 5,10-met 21.0 6.6E+02 0.014 23.2 9.8 59 4-68 158-224 (293)
262 PRK07878 molybdopterin biosynt 20.8 34 0.00073 32.8 0.1 65 175-247 20-151 (392)
263 COG0026 PurK Phosphoribosylami 20.7 84 0.0018 30.0 2.7 14 220-233 55-68 (375)
264 PRK04308 murD UDP-N-acetylmura 20.6 7.3E+02 0.016 23.7 9.4 27 76-102 71-97 (445)
265 KOG2380|consensus 20.6 1.1E+02 0.0023 29.3 3.2 19 218-236 98-117 (480)
266 PRK11579 putative oxidoreducta 20.5 1.3E+02 0.0027 28.0 3.9 33 218-250 53-97 (346)
267 TIGR01761 thiaz-red thiazoliny 20.4 1.2E+02 0.0026 28.6 3.7 21 217-237 52-72 (343)
268 KOG2555|consensus 20.3 1.3E+02 0.0029 29.2 3.9 90 6-102 489-581 (588)
No 1
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=2e-51 Score=380.66 Aligned_cols=234 Identities=30% Similarity=0.493 Sum_probs=197.9
Q ss_pred CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
|||||++++ ++ ++..+.|++.+++..++... ..+.+++.+.++++|+++++. .++++++|+++ |+||+|+++++
T Consensus 2 ~~~vl~~~~-~~--~~~~~~l~~~~~v~~~~~~~-~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~ 75 (323)
T PRK15409 2 KPSVILYKA-LP--DDLLQRLEEHFTVTQVANLS-PETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISV 75 (323)
T ss_pred CceEEEeCC-CC--HHHHHHHHhcCcEEEcCCCC-CCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECce
Confidence 699999995 77 78888888878887654321 346788999999999999763 58999999976 67777777777
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE 162 (294)
|+|+||++.++++||.|+|+ |++++++|||
T Consensus 76 G~d~id~~~~~~~gI~V~n~--------------------------------------------------~~~~~~~VAE 105 (323)
T PRK15409 76 GYDNFDVDALTARKILLMHT--------------------------------------------------PTVLTETVAD 105 (323)
T ss_pred ecccccHHHHHHCCCEEEeC--------------------------------------------------CCCCchHHHH
Confidence 77777666666555555555 8899999999
Q ss_pred HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------------------------
Q psy5259 163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------ 212 (294)
Q Consensus 163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------------ 212 (294)
|++++||++.|++..+++.+++|+|.........| .+|+|||+||||+
T Consensus 106 ~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g--~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~ 183 (323)
T PRK15409 106 TLMALVLSTARRVVEVAERVKAGEWTASIGPDWFG--TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA 183 (323)
T ss_pred HHHHHHHHHHcCHHHHHHHHHcCCCcccCcccccc--CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh
Confidence 99999999999999999999999996432222346 8999999999999
Q ss_pred --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
..+.++.+|++++++||+||+|||+|++|+||||++.| ||++|||+||++||++|+|+||+||||
T Consensus 184 ~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf 263 (323)
T PRK15409 184 EERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVF 263 (323)
T ss_pred HHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 11334568999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCCCC
Q psy5259 278 IPEPMPADHPLVQLDNC 294 (294)
Q Consensus 278 ~~EP~~~~~~l~~~~nv 294 (294)
++||++.++|||++|||
T Consensus 264 ~~EP~~~~~pL~~~~nv 280 (323)
T PRK15409 264 EQEPLSVDSPLLSLPNV 280 (323)
T ss_pred CCCCCCCCchhhcCCCE
Confidence 99999999999999996
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=374.32 Aligned_cols=232 Identities=32% Similarity=0.471 Sum_probs=194.6
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
+++++++.+.+ +. +..++.+.+..++...... ..+.+++.+.++++|+++. +.+++++++++.+ |+||+|++.
T Consensus 1 ~~~~~vl~~~~-~~--~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~ 73 (324)
T COG0111 1 KMMIKVLVTDP-LA--PDALEELLAAYDVEVPDGP--DLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRA 73 (324)
T ss_pred CCcceeeccCc-cC--HHHHHHHHhcccccccccc--ccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEc
Confidence 46889999985 77 8888877765333332222 3567788999999999998 7889999999986 677777777
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
++|+|+||+++++++||.|+|+ |+.++.+|
T Consensus 74 g~Gvd~id~~~~~~~gi~V~na--------------------------------------------------p~~na~~v 103 (324)
T COG0111 74 GAGVDNIDLEAATKRGILVVNA--------------------------------------------------PGGNAISV 103 (324)
T ss_pred cccccccCHHHHhhcCCEEEeC--------------------------------------------------CCcchHHH
Confidence 7777776666666555555555 99999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E------ 213 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~------ 213 (294)
|||+++++|++.|++..+++.++.|.|.+. ...| .+|+|||+||||+ +
T Consensus 104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~---~~~g--~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~ 178 (324)
T COG0111 104 AELVLALLLALARRIPDADASQRRGEWDRK---AFRG--TELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE 178 (324)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHcCCcccc---cccc--ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh
Confidence 999999999999999999999999999862 1345 7999999999999 0
Q ss_pred ----C-CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEee
Q psy5259 214 ----L-GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLD 275 (294)
Q Consensus 214 ----~-~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LD 275 (294)
. .....+|+++|++||||++|+|+|++|+||||++.| ||++||++||++||++|+|+||+||
T Consensus 179 ~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lD 258 (324)
T COG0111 179 RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALD 258 (324)
T ss_pred hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEec
Confidence 1 122357999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcCCCCC
Q psy5259 276 VMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 276 V~~~EP~~~~~~l~~~~nv 294 (294)
||++||+|++||||++|||
T Consensus 259 Vf~~EPl~~~~pL~~~pnV 277 (324)
T COG0111 259 VFEEEPLPADSPLWDLPNV 277 (324)
T ss_pred CCCCCCCCCCChhhcCCCe
Confidence 9999999999999999997
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=5.6e-50 Score=369.79 Aligned_cols=234 Identities=39% Similarity=0.642 Sum_probs=204.3
Q ss_pred CCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259 2 SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS 81 (294)
Q Consensus 2 ~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~ 81 (294)
+|++++.+. .++ ++..+++.+.|++..++......+ ++.+.++++|++++....++++++++++ |+||+|++++
T Consensus 1 mk~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~ 74 (324)
T COG1052 1 MKIVVLSTR-KLP--PEVLERLKEKFEVERYEDDLTPDT--ELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRS 74 (324)
T ss_pred CCcEEEecC-cCC--HHHHHHhhccEEEEEeccCCccch--HHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEec
Confidence 478888888 488 888999999999988876421222 6678899999999988889999999998 8898888888
Q ss_pred ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259 82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 161 (294)
Q Consensus 82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA 161 (294)
+||||||++.++++||.|+|+ |+++.++||
T Consensus 75 ~G~D~vDl~aa~~~gI~Vtnv--------------------------------------------------p~~~t~sVA 104 (324)
T COG1052 75 AGYDNVDLEAAKERGITVTNV--------------------------------------------------PGYSTEAVA 104 (324)
T ss_pred cccCcccHHHHHHCCcEEEeC--------------------------------------------------CCCCchHHH
Confidence 888888888887777766666 888888889
Q ss_pred HHHHHHHHHHhcCchhhhhhHhcCCCCccc-cccccccccCcCCCEEEEEcc----------------------------
Q psy5259 162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQ-TQTVISDIIGLNGSTVGIVGT---------------------------- 212 (294)
Q Consensus 162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~g~~~~l~gktvgIiG~---------------------------- 212 (294)
||+++++|++.|++.++++.+++|.|..+. .....| ++++|||+||+|+
T Consensus 105 e~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~--~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~ 182 (324)
T COG1052 105 EHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLG--FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE 182 (324)
T ss_pred HHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccc--cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChH
Confidence 999999999999999999999999998753 233566 8999999999999
Q ss_pred ---cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259 213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV 276 (294)
Q Consensus 213 ---~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV 276 (294)
..+.++.+|+|++++||+||+|||+|++|+||||++.| ||++|||+||++||++|+|+||||||
T Consensus 183 ~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV 262 (324)
T COG1052 183 AEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDV 262 (324)
T ss_pred HHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeee
Confidence 12356778999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCC
Q psy5259 277 MIPEPMPADHPLVQLDN 293 (294)
Q Consensus 277 ~~~EP~~~~~~l~~~~n 293 (294)
|++||.+.++||++++|
T Consensus 263 ~e~Ep~~~d~~l~~l~~ 279 (324)
T COG1052 263 FENEPALFDHPLLRLDN 279 (324)
T ss_pred cCCCCCCCChhHhhccC
Confidence 99999888899999887
No 4
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-49 Score=364.17 Aligned_cols=230 Identities=28% Similarity=0.460 Sum_probs=191.4
Q ss_pred eEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccC
Q psy5259 5 KLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGH 84 (294)
Q Consensus 5 kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~ 84 (294)
||+++++ .+..+..++.|++.+++..++. .+.+++.+.++++|+++++ ..++++++|+.+ |+||+|++.++|+
T Consensus 2 ki~~~~~-~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~ 74 (311)
T PRK08410 2 KIVILDA-KTLGDKDLSVFEEFGDFQIYPT----TSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGT 74 (311)
T ss_pred eEEEEec-CCCChhhHHHHhhCceEEEeCC----CCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEccccc
Confidence 5777764 2222677888888777766532 3568899999999999886 568999999986 6787777777777
Q ss_pred cccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHH
Q psy5259 85 DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFN 164 (294)
Q Consensus 85 d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~a 164 (294)
|+||++.++++||.|+|+ |++++.+||||+
T Consensus 75 d~id~~~~~~~gI~v~n~--------------------------------------------------~g~~~~~VAE~a 104 (311)
T PRK08410 75 NNVDIEYAKKKGIAVKNV--------------------------------------------------AGYSTESVAQHT 104 (311)
T ss_pred ccccHHHHHhCCCEEEcC--------------------------------------------------CCCCChHHHHHH
Confidence 777777776666666555 888999999999
Q ss_pred HHHHHHHhcCchhhhhhHhcCCCCcccccc---ccccccCcCCCEEEEEcc---------------------c-------
Q psy5259 165 IGLAIAVSRRFQQGHNCIASGEWALKQTQT---VISDIIGLNGSTVGIVGT---------------------E------- 213 (294)
Q Consensus 165 l~l~l~~~r~~~~~~~~~~~~~w~~~~~~~---~~g~~~~l~gktvgIiG~---------------------~------- 213 (294)
++++|++.|++..+++.+++|.|....... ..+ ++|+|||+||||+ +
T Consensus 105 ~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~--~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~ 182 (311)
T PRK08410 105 FAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPL--GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN 182 (311)
T ss_pred HHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccc--cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc
Confidence 999999999999999999999997532111 113 7899999999999 1
Q ss_pred CCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCC
Q psy5259 214 LGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280 (294)
Q Consensus 214 ~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~E 280 (294)
.+.++++|++++++||+||+|||+|++|+||||++.| ||++|||+||++||++|+|+ |+||||++|
T Consensus 183 ~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~E 261 (311)
T PRK08410 183 EEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKE 261 (311)
T ss_pred cCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCC
Confidence 1234568999999999999999999999999999999 99999999999999999999 999999999
Q ss_pred CCCCCCCCcCC---CCC
Q psy5259 281 PMPADHPLVQL---DNC 294 (294)
Q Consensus 281 P~~~~~~l~~~---~nv 294 (294)
|+++++|||++ |||
T Consensus 262 P~~~~~pL~~~~~~~Nv 278 (311)
T PRK08410 262 PMEKNHPLLSIKNKEKL 278 (311)
T ss_pred CCCCCChhhccCCCCCE
Confidence 99999999997 786
No 5
>KOG0068|consensus
Probab=100.00 E-value=5.9e-49 Score=353.15 Aligned_cols=228 Identities=32% Similarity=0.552 Sum_probs=199.9
Q ss_pred eEEEecCCCCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259 5 KLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG 83 (294)
Q Consensus 5 kvl~~~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G 83 (294)
+||+++ ++. +..++.|++. ++++.+.. .+.|++++.++++|++++++.+++++++|+....+||+|+.+
T Consensus 8 ~il~~e-~~~--~~~~~~l~~~g~~v~~~~~----~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgra--- 77 (406)
T KOG0068|consen 8 KILVAE-SLD--QACIEILKDNGYQVEFKKN----LSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRA--- 77 (406)
T ss_pred eEEEec-ccc--hHHHHHHHhcCceEEEecc----CCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEec---
Confidence 699999 588 9999999995 58877654 678899999999999999999999999999554455555554
Q ss_pred CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259 84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF 163 (294)
Q Consensus 84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~ 163 (294)
++|+|++|++++.++||.|.|+|.+|+.++||+
T Consensus 78 -----------------------------------------------g~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEl 110 (406)
T KOG0068|consen 78 -----------------------------------------------GIGVDNVDLKAATENGILVVNTPTANSRSAAEL 110 (406)
T ss_pred -----------------------------------------------ccCccccChhhHHhCCeEEEeCCCCChHHHHHH
Confidence 555555555555566666666699999999999
Q ss_pred HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-------------------------------
Q psy5259 164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------- 212 (294)
Q Consensus 164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------------- 212 (294)
++++++++.|++.+....++.|+|++.. ..| .+++|||+||+|+
T Consensus 111 tigli~SLaR~i~~A~~s~k~g~wnr~~---~~G--~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~ 185 (406)
T KOG0068|consen 111 TIGLILSLARQIGQASASMKEGKWNRVK---YLG--WELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAE 185 (406)
T ss_pred HHHHHHHHhhhcchhheeeecCceeecc---eee--eEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHH
Confidence 9999999999999999999999998753 456 9999999999999
Q ss_pred cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259 213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIP 279 (294)
Q Consensus 213 ~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~ 279 (294)
.+|++.++++|+|+.||||++|||+||+|++|+|.+.| ||.+|||+||++||++|+++|||+|||+.
T Consensus 186 a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~ 265 (406)
T KOG0068|consen 186 AFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPE 265 (406)
T ss_pred hccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccC
Confidence 56888999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCC--CCCCcCCCCC
Q psy5259 280 EPMPA--DHPLVQLDNC 294 (294)
Q Consensus 280 EP~~~--~~~l~~~~nv 294 (294)
||+.. ++.|.+||||
T Consensus 266 Epp~~~~~~~Lv~hpnV 282 (406)
T KOG0068|consen 266 EPPKNGWDSELVSHPNV 282 (406)
T ss_pred CCCccchhHHHhcCCce
Confidence 99665 7899999997
No 6
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=4.5e-48 Score=360.14 Aligned_cols=235 Identities=32% Similarity=0.618 Sum_probs=197.9
Q ss_pred CCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259 2 SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS 81 (294)
Q Consensus 2 ~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~ 81 (294)
|||||+++.+ ++ ++..+.|++.+++..+.... ..+.+++.+.++++|+++++...++++++++++ |+||+|++++
T Consensus 1 ~~~kil~~~~-~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~ 75 (333)
T PRK13243 1 MKPKVFITRE-IP--ENGIEMLEEHFEVEVWEDER-EIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYA 75 (333)
T ss_pred CCceEEEECC-CC--HHHHHHHhcCceEEEecCCC-CCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecC
Confidence 3699999984 76 77778888877776553321 357788999999999999876668999999986 7788888877
Q ss_pred ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259 82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 161 (294)
Q Consensus 82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA 161 (294)
+|+|+||++.++++||.|+|+ +|+++.+||
T Consensus 76 ~G~d~id~~~~~~~gI~v~n~--------------------------------------------------~g~~~~~vA 105 (333)
T PRK13243 76 VGYDNIDVEEATRRGIYVTNT--------------------------------------------------PGVLTEATA 105 (333)
T ss_pred ccccccCHHHHHHcCCEEEEC--------------------------------------------------CCCChHHHH
Confidence 777777777777666666555 888999999
Q ss_pred HHHHHHHHHHhcCchhhhhhHhcCCCCccc----cccccccccCcCCCEEEEEcc-------------------------
Q psy5259 162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQ----TQTVISDIIGLNGSTVGIVGT------------------------- 212 (294)
Q Consensus 162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~----~~~~~g~~~~l~gktvgIiG~------------------------- 212 (294)
||++++||++.|++..+++.+++|.|.+.. .....| ++|+|||+||||+
T Consensus 106 E~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g--~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 183 (333)
T PRK13243 106 DFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLG--YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR 183 (333)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccc--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 999999999999999999999999997421 111245 8999999999999
Q ss_pred ------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEE
Q psy5259 213 ------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAG 273 (294)
Q Consensus 213 ------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~ 273 (294)
..+..+.++++++++||+|++|+|+|++|+++||++.| ||++||++||++||++|+|+||+
T Consensus 184 ~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAa 263 (333)
T PRK13243 184 KPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAG 263 (333)
T ss_pred ChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEE
Confidence 11234568999999999999999999999999999888 99999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCcCCCCC
Q psy5259 274 LDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 274 LDV~~~EP~~~~~~l~~~~nv 294 (294)
||||++||++ ++|||++|||
T Consensus 264 LDV~~~EP~~-~~pL~~~~nv 283 (333)
T PRK13243 264 LDVFEEEPYY-NEELFSLKNV 283 (333)
T ss_pred eccCCCCCCC-CchhhcCCCE
Confidence 9999999988 8999999996
No 7
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-47 Score=365.06 Aligned_cols=232 Identities=29% Similarity=0.421 Sum_probs=195.7
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhc-cc-eEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILED-MF-DIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIS 78 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~-~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~ 78 (294)
|+||||++++ +++ ++..+.|++ .+ ++..++. ..+.+++.+.++++|++++++..++++++|+.+ |+||+|+
T Consensus 8 ~~~~~ili~~-~~~--~~~~~~l~~~~~~~v~~~~~---~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~ 80 (409)
T PRK11790 8 KDKIKFLLLE-GVH--QSAVEVLRAAGYTNIEYHKG---ALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIG 80 (409)
T ss_pred CCCeEEEEEC-CCC--HHHHHHHHhcCCceEEECCC---CCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEE
Confidence 4678999998 477 777888877 46 7766543 357788999999999998876678999999876 6777777
Q ss_pred eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259 79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD 158 (294)
Q Consensus 79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~ 158 (294)
++++|+|+||++.++++||.|+|+ |++++.
T Consensus 81 ~~~~G~d~id~~~~~~~gI~V~n~--------------------------------------------------pg~~~~ 110 (409)
T PRK11790 81 CFCIGTNQVDLDAAAKRGIPVFNA--------------------------------------------------PFSNTR 110 (409)
T ss_pred ECceecccccHHHHHhCCCEEEeC--------------------------------------------------CCCChH
Confidence 777777777777666666555555 889999
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c----
Q psy5259 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E---- 213 (294)
Q Consensus 159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~---- 213 (294)
+||||+++++|++.|++..+++.+++|.|.... ..| ++|.|||+||||+ +
T Consensus 111 aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~---~~~--~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~ 185 (409)
T PRK11790 111 SVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA---AGS--FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDK 185 (409)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcCcccccc---cCc--ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 999999999999999999999999999997532 235 8999999999999 1
Q ss_pred ---CCCcc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259 214 ---LGAQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV 276 (294)
Q Consensus 214 ---~~~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV 276 (294)
.++.+ .+|+|++++||+|++|||+|++|+||||++.| ||++||++||++||++|+|+||+|||
T Consensus 186 ~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV 265 (409)
T PRK11790 186 LPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDV 265 (409)
T ss_pred cccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcC
Confidence 11222 38999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCCCCCC----CCCCcCCCCC
Q psy5259 277 MIPEPMPA----DHPLVQLDNC 294 (294)
Q Consensus 277 ~~~EP~~~----~~~l~~~~nv 294 (294)
|++||++. ++|||++|||
T Consensus 266 f~~EP~~~~~~~~~pL~~~~nv 287 (409)
T PRK11790 266 FPVEPKSNGDPFESPLRGLDNV 287 (409)
T ss_pred CCCCCCCccccccchhhcCCCE
Confidence 99999886 4799999996
No 8
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-47 Score=354.12 Aligned_cols=232 Identities=27% Similarity=0.474 Sum_probs=187.9
Q ss_pred eEEEecCC-CCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 5 KLLLTRND-YPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 5 kvl~~~~~-~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
||++++.. ++..+...+.|++. .++..+.. .+.+++.+.++++|+++++ ..++++++++.+ |+||+|++.++
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~ 75 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDA----TTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAAT 75 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecC----CCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCc
Confidence 47777631 22124555667654 35544432 4678889999999998876 468999999876 77877777777
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE 162 (294)
|+|++|++.++++||.|+|+ +++++.+|||
T Consensus 76 G~d~id~~~~~~~gI~v~n~--------------------------------------------------~g~~~~~vAE 105 (317)
T PRK06487 76 GTNNVDLAAARERGITVCNC--------------------------------------------------QGYGTPSVAQ 105 (317)
T ss_pred cccccCHHHHHHCCCEEEeC--------------------------------------------------CCCCcchHHH
Confidence 77777777766666655555 8889999999
Q ss_pred HHHHHHHHHhcCchhhhhhHhcCCCCccccc---cccccccCcCCCEEEEEcc------------cC-------------
Q psy5259 163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQ---TVISDIIGLNGSTVGIVGT------------EL------------- 214 (294)
Q Consensus 163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~---~~~g~~~~l~gktvgIiG~------------~~------------- 214 (294)
|++++||++.|++..+++.+++|.|...... ...+ ++|+|||+||+|+ .+
T Consensus 106 ~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~--~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~ 183 (317)
T PRK06487 106 HTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPI--VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP 183 (317)
T ss_pred HHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcc--cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc
Confidence 9999999999999999999999999754221 1123 7899999999999 11
Q ss_pred -CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCC
Q psy5259 215 -GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280 (294)
Q Consensus 215 -~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~E 280 (294)
..++++|++++++||+||+|||+|++|+||||++.| ||++|||+||++||++|+|+||+||||++|
T Consensus 184 ~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~E 263 (317)
T PRK06487 184 ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVE 263 (317)
T ss_pred ccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCC
Confidence 123568999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCCCCCCcC--CCCC
Q psy5259 281 PMPADHPLVQ--LDNC 294 (294)
Q Consensus 281 P~~~~~~l~~--~~nv 294 (294)
|++.++|||+ +|||
T Consensus 264 P~~~~~pl~~~~~pnv 279 (317)
T PRK06487 264 PPVNGNPLLAPDIPRL 279 (317)
T ss_pred CCCCCCchhhcCCCCE
Confidence 9999999995 8996
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-47 Score=353.22 Aligned_cols=202 Identities=30% Similarity=0.484 Sum_probs=171.5
Q ss_pred CCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHH
Q psy5259 39 MPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLA 118 (294)
Q Consensus 39 ~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~ 118 (294)
.+.+++.+.++++|+++++ ..++++++|+.+ |+||+|++.++|+|+||.+.++++||.|+|+
T Consensus 33 ~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~---------------- 94 (314)
T PRK06932 33 TSAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNV---------------- 94 (314)
T ss_pred CChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeC----------------
Confidence 4678899999999998875 568999999976 6777777777777777766666555555555
Q ss_pred HHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccc---cc
Q psy5259 119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQ---TV 195 (294)
Q Consensus 119 l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~---~~ 195 (294)
+++++.+||||+++++|++.|++..+++.++++.|...... ..
T Consensus 95 ----------------------------------~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~ 140 (314)
T PRK06932 95 ----------------------------------TGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDY 140 (314)
T ss_pred ----------------------------------CCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCC
Confidence 88999999999999999999999999999999999643211 01
Q ss_pred cccccCcCCCEEEEEcc------------cCC---------------CcccCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259 196 ISDIIGLNGSTVGIVGT------------ELG---------------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 196 ~g~~~~l~gktvgIiG~------------~~~---------------~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
.+ ++|+|||+||||+ .++ ..+.+|++++++||+||+|||+|++|+||||++
T Consensus 141 ~~--~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~ 218 (314)
T PRK06932 141 PI--TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAE 218 (314)
T ss_pred cc--cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHH
Confidence 23 7899999999999 111 124689999999999999999999999999999
Q ss_pred cc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCc----CCCCC
Q psy5259 249 QF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV----QLDNC 294 (294)
Q Consensus 249 ~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~----~~~nv 294 (294)
.| ||++|||+||++||++|+|+||+||||++||++.++||| ++|||
T Consensus 219 ~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnv 281 (314)
T PRK06932 219 TLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNL 281 (314)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCE
Confidence 99 999999999999999999999999999999999999998 58996
No 10
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=4.9e-46 Score=351.25 Aligned_cols=237 Identities=22% Similarity=0.356 Sum_probs=193.4
Q ss_pred CCCeEEEecCCCCCCch-hHHHhhc-cceEEEcCCCCCCCCHHHHHHHc-cCCcEEEeCCCCCCCHHHHhhcCC-CceEE
Q psy5259 2 SKPKLLLTRNDYPRVSP-AYDILED-MFDIITYPISEGRMPRDIFIEKL-KGCSALLCNPHQKVDKEALDESGE-NLKVI 77 (294)
Q Consensus 2 ~k~kvl~~~~~~~~~~~-~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l-~~~d~~~~~~~~~~~~~~l~~~~~-~lk~i 77 (294)
.|++|+++.+ ++ +. ..+.|++ .++++.+.......+.+++.+.+ .++|+++++...++++++|+.++. +||+|
T Consensus 14 ~~~~v~~~~~-~~--~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I 90 (386)
T PLN02306 14 GKYRVVSTKP-MP--GTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF 90 (386)
T ss_pred CCceEEEeCC-CC--cHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence 3789999984 76 53 5778877 47887554211135788898887 579999988667899999998732 35777
Q ss_pred EeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCch
Q psy5259 78 STFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS 157 (294)
Q Consensus 78 ~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~ 157 (294)
++.++|+|+||+++++++||.|+|+ +++++
T Consensus 91 ~~~~~G~D~iD~~aa~~~gI~V~n~--------------------------------------------------pg~~~ 120 (386)
T PLN02306 91 SNMAVGYNNVDVEAANKYGIAVGNT--------------------------------------------------PGVLT 120 (386)
T ss_pred EECCcccccccHHHHHHCCCEEEEC--------------------------------------------------CCcCH
Confidence 7777777777666666555555555 88999
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-------------cCCC--------
Q psy5259 158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------ELGA-------- 216 (294)
Q Consensus 158 ~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------~~~~-------- 216 (294)
.+||||++++||++.|++..+++.+++|.|..|......| ++++|||+||||+ .++.
T Consensus 121 ~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g--~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~ 198 (386)
T PLN02306 121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG--NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC--cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9999999999999999999999999999997654332356 8999999999999 0110
Q ss_pred --------------------------c-ccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCC
Q psy5259 217 --------------------------Q-LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256 (294)
Q Consensus 217 --------------------------~-~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvd 256 (294)
+ ..+|++++++||+|++|||+|++|+||||++.| ||++||
T Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVD 278 (386)
T PLN02306 199 QSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVID 278 (386)
T ss_pred CchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 1 248999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 257 e~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv 294 (294)
|+||++||++|+|+||+||||++||++ ++|||++|||
T Consensus 279 e~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNV 315 (386)
T PLN02306 279 EVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNA 315 (386)
T ss_pred HHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCE
Confidence 999999999999999999999999975 4799999996
No 11
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=5.1e-46 Score=347.88 Aligned_cols=227 Identities=22% Similarity=0.399 Sum_probs=189.4
Q ss_pred CCCCeEEEecCCCCCCch----hHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceE
Q psy5259 1 MSKPKLLLTRNDYPRVSP----AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKV 76 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~----~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~ 76 (294)
|+|||||++.+ .. +. ..+.+++ +.+..+.. .+.+++.+.++++|+++++ ..++++++|+.+ |+||+
T Consensus 16 ~~~~~vl~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~----~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~ 85 (347)
T PLN02928 16 MRPTRVLFCGP-EF--PASYSYTREYLQK-YPFIQVDA----VAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKL 85 (347)
T ss_pred CCCCEEEEECC-Cc--hhHHHHHHHHhhc-CCeeEecC----CCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceE
Confidence 67999999985 33 32 2344433 33333332 4677889999999998876 458999999986 88888
Q ss_pred EEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCC--
Q psy5259 77 ISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGP-- 154 (294)
Q Consensus 77 i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~-- 154 (294)
|++.++|+|++|++.+.++||.|+|+ |+
T Consensus 86 I~~~~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~ 115 (347)
T PLN02928 86 IMQFGVGLEGVDVDAATKHGIKVARI--------------------------------------------------PSEG 115 (347)
T ss_pred EEECCcccCcCcHHHHHhCCCEEEEC--------------------------------------------------CCCC
Confidence 88888888888888877777777776 54
Q ss_pred -CchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC------
Q psy5259 155 -VSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG------ 215 (294)
Q Consensus 155 -~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~------ 215 (294)
.++.+||||+++++|++.|++..+.+.++++.|.. ..+ .+|+|||+||||+ .+|
T Consensus 116 ~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~--~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~ 188 (347)
T PLN02928 116 TGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIG--DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT 188 (347)
T ss_pred CcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccc--cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE
Confidence 37899999999999999999999999999999954 234 7899999999999 000
Q ss_pred --------------------------CcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCC
Q psy5259 216 --------------------------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256 (294)
Q Consensus 216 --------------------------~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvd 256 (294)
..+.+|++++++||+|++|||+|++|+||||++.| ||++||
T Consensus 189 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVd 268 (347)
T PLN02928 189 RRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLD 268 (347)
T ss_pred CCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccC
Confidence 13458999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 257 e~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv 294 (294)
|+||++||++|+|+||+||||++||+++++|||++|||
T Consensus 269 e~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nv 306 (347)
T PLN02928 269 YDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNV 306 (347)
T ss_pred HHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCE
Confidence 99999999999999999999999999999999999996
No 12
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-45 Score=345.34 Aligned_cols=219 Identities=28% Similarity=0.461 Sum_probs=183.0
Q ss_pred HHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCC
Q psy5259 20 YDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRG 96 (294)
Q Consensus 20 ~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~g 96 (294)
.+.|++ +++++..... ..+.+++.+.++++|++++.. ..++++++|+.+ |+||+|++.++|+|+||++.+.++|
T Consensus 68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~g 144 (386)
T PLN03139 68 RDWLESQGHQYIVTDDK--EGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAG 144 (386)
T ss_pred HHHHHhcCCeEEEeCCC--CCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCC
Confidence 344555 4788776543 357788999999999999863 247999999986 7777777777777777777666566
Q ss_pred cEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCch
Q psy5259 97 IRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ 176 (294)
Q Consensus 97 I~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~ 176 (294)
|.|+|+ +|+++.+||||++++||++.|++.
T Consensus 145 I~V~n~--------------------------------------------------~g~na~sVAE~al~liL~l~R~~~ 174 (386)
T PLN03139 145 LTVAEV--------------------------------------------------TGSNVVSVAEDELMRILILLRNFL 174 (386)
T ss_pred eEEEEC--------------------------------------------------CCcCcHHHHHHHHHHHHHHHcCcH
Confidence 555555 889999999999999999999999
Q ss_pred hhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-----------CCCcc-cCHHH
Q psy5259 177 QGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-----------LGAQL-VPLDT 223 (294)
Q Consensus 177 ~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-----------~~~~~-~~l~e 223 (294)
.+++.+++|.|..... ...+ ++|.|||+||||+ + .++.+ .++++
T Consensus 175 ~~~~~~~~g~W~~~~~-~~~~--~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~e 251 (386)
T PLN03139 175 PGYHQVVSGEWNVAGI-AYRA--YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDA 251 (386)
T ss_pred HHHHHHHhCCCccccc-cCCC--cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHH
Confidence 9999999999974221 1234 7999999999999 1 12233 38999
Q ss_pred HhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcC
Q psy5259 224 LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQ 290 (294)
Q Consensus 224 ll~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~ 290 (294)
++++||+|++|||+|++|+||||++.| ||++||++||++||++|+|+||+||||++||+|+++|||+
T Consensus 252 ll~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~ 331 (386)
T PLN03139 252 MLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY 331 (386)
T ss_pred HHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhc
Confidence 999999999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy5259 291 LDNC 294 (294)
Q Consensus 291 ~~nv 294 (294)
+|||
T Consensus 332 ~pNv 335 (386)
T PLN03139 332 MPNH 335 (386)
T ss_pred CCCe
Confidence 9996
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=5.9e-45 Score=357.59 Aligned_cols=226 Identities=34% Similarity=0.571 Sum_probs=192.0
Q ss_pred eEEEecCCCCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259 5 KLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG 83 (294)
Q Consensus 5 kvl~~~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G 83 (294)
||+++++ ++ ++..+.|++. +++.... ..+++++.+.++++|++++++..++++++|+.+ |+||+|++.++|
T Consensus 1 ~vli~~~-~~--~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G 72 (525)
T TIGR01327 1 KVLIADP-IS--PDGIDILEDVGVEVDVQT----GLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVG 72 (525)
T ss_pred CEEEeCC-CC--HHHHHHHHhcCcEEEeCC----CCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcc
Confidence 5788884 76 7778888764 6776532 247789999999999999887779999999976 777777777777
Q ss_pred CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259 84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF 163 (294)
Q Consensus 84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~ 163 (294)
+|++|++.++++||.|+|+ |++++.+||||
T Consensus 73 ~d~id~~~~~~~gI~V~n~--------------------------------------------------pg~~~~~vAE~ 102 (525)
T TIGR01327 73 VDNIDIEAATARGILVVNA--------------------------------------------------PTGNTISAAEH 102 (525)
T ss_pred cchhcHHHHHHCCCEEEeC--------------------------------------------------CCcChHHHHHH
Confidence 7777777666666655555 88999999999
Q ss_pred HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-------------------------------
Q psy5259 164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------- 212 (294)
Q Consensus 164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------------- 212 (294)
++++||++.|++..+++.+++|+|.+.. ..| .+|+|||+||||+
T Consensus 103 ~~~l~L~~~R~~~~~~~~~~~g~W~~~~---~~g--~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~ 177 (525)
T TIGR01327 103 ALAMLLAAARNIPQADASLKEGEWDRKA---FMG--TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAE 177 (525)
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCccccc---cCc--cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHH
Confidence 9999999999999999999999997532 346 8999999999999
Q ss_pred cCCCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259 213 ELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI 278 (294)
Q Consensus 213 ~~~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~ 278 (294)
+.++++. ++++++++||+|++|||+|++|+||||++.| ||++|||+||++||++|+|+||+||||+
T Consensus 178 ~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~ 257 (525)
T TIGR01327 178 QLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFE 257 (525)
T ss_pred hcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCC
Confidence 1122333 7999999999999999999999999999998 9999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCCCC
Q psy5259 279 PEPMPADHPLVQLDNC 294 (294)
Q Consensus 279 ~EP~~~~~~l~~~~nv 294 (294)
+||+ +++|||++|||
T Consensus 258 ~EP~-~~~pL~~~~nv 272 (525)
T TIGR01327 258 KEPP-TDNPLFDLDNV 272 (525)
T ss_pred CCCC-CCChhhcCCCe
Confidence 9995 57999999996
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=7.7e-45 Score=356.87 Aligned_cols=227 Identities=35% Similarity=0.583 Sum_probs=193.7
Q ss_pred CeEEEecCCCCCCchhHHHhhcc--ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDM--FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS 81 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~--~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~ 81 (294)
|||+++++ ++ +..++.|++. +++.... ..+.+++.+.++++|++++++..++++++|+.+ |+||+|++.+
T Consensus 1 m~ili~~~-~~--~~~~~~l~~~~~~~v~~~~----~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~ 72 (526)
T PRK13581 1 MKVLVSDP-IS--PAGLEILKDAPGVEVDVKT----GLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAG 72 (526)
T ss_pred CeEEEeCC-CC--HHHHHHHhccCCeEEEeCC----CCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECC
Confidence 47999984 76 7778888874 6666432 246788999999999999887678999999876 7777777777
Q ss_pred ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259 82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 161 (294)
Q Consensus 82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA 161 (294)
+|+|++|+++++++||.|+|+ |++++.+||
T Consensus 73 ~G~d~id~~~~~~~gI~V~n~--------------------------------------------------p~~~~~~vA 102 (526)
T PRK13581 73 VGVDNVDVPAATRRGIIVVNA--------------------------------------------------PTGNTISAA 102 (526)
T ss_pred cccccccHHHHHHCCCEEEeC--------------------------------------------------CCCChHHHH
Confidence 777777777766666665555 888999999
Q ss_pred HHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-----------------------------
Q psy5259 162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------- 212 (294)
Q Consensus 162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------- 212 (294)
||++++||++.|++..+++.+++|.|.+.. ..| .+|+|||+||||+
T Consensus 103 E~~l~l~L~~~R~~~~~~~~~~~g~W~~~~---~~g--~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 177 (526)
T PRK13581 103 EHTIALMLALARNIPQAHASLKAGKWERKK---FMG--VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER 177 (526)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHcCCCCccC---ccc--cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH
Confidence 999999999999999999999999997532 345 8999999999999
Q ss_pred --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
..++++.++++++++||+|++|+|+|++|+|+||++.| ||++|||+||++||++|+|+||+||||
T Consensus 178 ~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf 257 (526)
T PRK13581 178 AAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVF 257 (526)
T ss_pred HHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecC
Confidence 12334558999999999999999999999999999888 999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCCCC
Q psy5259 278 IPEPMPADHPLVQLDNC 294 (294)
Q Consensus 278 ~~EP~~~~~~l~~~~nv 294 (294)
++||++ ++|||++|||
T Consensus 258 ~~EP~~-~~pL~~~~nv 273 (526)
T PRK13581 258 EKEPPT-DSPLFELPNV 273 (526)
T ss_pred CCCCCC-CchhhcCCCe
Confidence 999976 8999999997
No 15
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-45 Score=343.34 Aligned_cols=218 Identities=29% Similarity=0.510 Sum_probs=183.0
Q ss_pred HHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCc
Q psy5259 21 DILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGI 97 (294)
Q Consensus 21 ~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI 97 (294)
+.|++ +++++..... ..+.+++.+.++++|++++++ ..++++++|+.+ |+||+|++.++|+|++|++.+.++||
T Consensus 62 ~~l~~~g~e~~~~~~~--~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI 138 (385)
T PRK07574 62 KFLEERGHELVVTSDK--DGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGI 138 (385)
T ss_pred HHHHhcCcEEEEeCCC--CCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCc
Confidence 45565 4788775432 357788999999999999863 357999999886 77777777777777777776666665
Q ss_pred EEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchh
Q psy5259 98 RVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177 (294)
Q Consensus 98 ~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~ 177 (294)
.|+|+ +++++.+||||+++++|++.|++..
T Consensus 139 ~V~n~--------------------------------------------------~g~~a~~VAE~al~l~L~l~R~~~~ 168 (385)
T PRK07574 139 TVAEV--------------------------------------------------TGSNSISVAEHVVMMILALVRNYEP 168 (385)
T ss_pred EEEcC--------------------------------------------------CCCchHHHHHHHHHHHHHHHcCHHH
Confidence 55555 8889999999999999999999999
Q ss_pred hhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-----------CCCc-ccCHHHH
Q psy5259 178 GHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-----------LGAQ-LVPLDTL 224 (294)
Q Consensus 178 ~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-----------~~~~-~~~l~el 224 (294)
+++.+++|.|...... ..+ ++|+||||||||+ + .+.+ +.+++|+
T Consensus 169 ~~~~~~~g~W~~~~~~-~~~--~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~el 245 (385)
T PRK07574 169 SHRQAVEGGWNIADCV-SRS--YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSL 245 (385)
T ss_pred HHHHHHhCCCCccccc-ccc--eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHH
Confidence 9999999999753211 234 7899999999999 1 1222 3589999
Q ss_pred hccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCC
Q psy5259 225 CAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL 291 (294)
Q Consensus 225 l~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~ 291 (294)
+++||+|++|||+|++|+||||++.| ||++||++||++||++|+|+||+||||++||+|++||||++
T Consensus 246 l~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~ 325 (385)
T PRK07574 246 VSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTM 325 (385)
T ss_pred hhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhC
Confidence 99999999999999999999999888 99999999999999999999999999999999999999999
Q ss_pred CCC
Q psy5259 292 DNC 294 (294)
Q Consensus 292 ~nv 294 (294)
|||
T Consensus 326 pNv 328 (385)
T PRK07574 326 PRN 328 (385)
T ss_pred CCe
Confidence 996
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-42 Score=320.75 Aligned_cols=232 Identities=19% Similarity=0.294 Sum_probs=180.5
Q ss_pred CeEEEecCCCCCCchhHHHhhc--cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcC-CCceEEEec
Q psy5259 4 PKLLLTRNDYPRVSPAYDILED--MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESG-ENLKVISTF 80 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~--~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~-~~lk~i~~~ 80 (294)
|||++... -+.=.+...++.+ .+++...+. ..+.| ..+.++++|+++++...+++++++++++ ++||+|++.
T Consensus 2 ~~i~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~ 76 (330)
T PRK12480 2 TKIMFFGT-RDYEKEMALNWGKKNNVEVTTSKE---LLSSA-TVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQR 76 (330)
T ss_pred cEEEEEeC-cHHHHHHHHHHHHhcCeEEEEcCC---CCCHH-HHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence 78888773 2211233333333 345544332 34555 5889999999998766789999999873 377777777
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
++|+|+||++.++++||.|+|+ |++++++|
T Consensus 77 ~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------~~~~~~~v 106 (330)
T PRK12480 77 TAGFDMYDLDLAKKHNIVISNV--------------------------------------------------PSYSPETI 106 (330)
T ss_pred ccccchhhHHHHHHCCCEEEeC--------------------------------------------------CCCChHHH
Confidence 7777777776666555555555 88999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC-------------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG------------- 215 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~------------- 215 (294)
|||+++++|++.|++..+++.+++|.|. |... ..| ++|+|+++||||+ .++
T Consensus 107 AE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~--~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~ 182 (330)
T PRK12480 107 AEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMS--KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKD 182 (330)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCc--cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHh
Confidence 9999999999999999999999999774 2211 245 8999999999999 111
Q ss_pred ---Ccc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259 216 ---AQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI 278 (294)
Q Consensus 216 ---~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~ 278 (294)
.++ .++++++++||+|++|+|++++|+++++++.| ||.+||++||++||++|+|+||+||||+
T Consensus 183 ~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 183 LDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred hhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 122 37999999999999999999999999998888 9999999999999999999999999999
Q ss_pred CCCCC-------------CCCCCcCCCCC
Q psy5259 279 PEPMP-------------ADHPLVQLDNC 294 (294)
Q Consensus 279 ~EP~~-------------~~~~l~~~~nv 294 (294)
+||++ ..+|||++|||
T Consensus 263 ~EP~~~~~~~~~~~~~~~~~~~L~~~~nv 291 (330)
T PRK12480 263 NEAAYFTNDWTNKDIDDKTLLELIEHERI 291 (330)
T ss_pred CCCccccccccccccCchhhHHHhcCCCE
Confidence 99962 12479999996
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=3.6e-42 Score=320.55 Aligned_cols=234 Identities=22% Similarity=0.340 Sum_probs=186.3
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC--ceEEE
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN--LKVIS 78 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~--lk~i~ 78 (294)
|+|++++.+.+ .+ .+.++.+.+.++++..... ....++..+.++++|+++++...++++++|+.+ |+ ||+|+
T Consensus 1 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~lk~I~ 74 (332)
T PRK08605 1 MTKIKIMSVRD-ED--APYIKAWAEKHHVEVDLTK--EALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLL-NELGIKQIA 74 (332)
T ss_pred CcEEEEEecCH-HH--HHHHHHHHHhcCeEEEEec--CCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhh-hhcCceEEE
Confidence 78899999984 66 7888888775555432111 123355678899999998877779999999987 43 66666
Q ss_pred eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259 79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD 158 (294)
Q Consensus 79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~ 158 (294)
+.++|+|++|++.++++||.| +|+|++++.
T Consensus 75 ~~~~G~d~id~~~~~~~gi~v--------------------------------------------------~n~~~~~~~ 104 (332)
T PRK08605 75 QRSAGFDTYDLELATKYNLII--------------------------------------------------SNVPSYSPE 104 (332)
T ss_pred EcccccchhhHHHHHHCCCEE--------------------------------------------------EeCCCCChH
Confidence 666666666666655555555 555889999
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-------------cCC----------
Q psy5259 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------ELG---------- 215 (294)
Q Consensus 159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------~~~---------- 215 (294)
+||||+++++|++.|++..+++.+++|.|. |... ..| ++|+|++|||||+ .++
T Consensus 105 ~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~--~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~ 180 (332)
T PRK08605 105 SIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILS--RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFP 180 (332)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-ccc--ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 999999999999999999999999999884 3221 345 8999999999999 011
Q ss_pred -------Ccc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259 216 -------AQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGL 274 (294)
Q Consensus 216 -------~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~L 274 (294)
.+. .++++++++||+|++|+|++++|+++++++.| ||.++|+++|+++|++|+|+||+|
T Consensus 181 ~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal 260 (332)
T PRK08605 181 NAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAAL 260 (332)
T ss_pred cHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEE
Confidence 122 37999999999999999999999999998776 999999999999999999999999
Q ss_pred eCCCCCC--CCCCC-----------CCcCCCCC
Q psy5259 275 DVMIPEP--MPADH-----------PLVQLDNC 294 (294)
Q Consensus 275 DV~~~EP--~~~~~-----------~l~~~~nv 294 (294)
|||++|| +|.++ +||++|||
T Consensus 261 DV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nv 293 (332)
T PRK08605 261 DTYEFERPLFPSDQRGQTINDPLLESLINREDV 293 (332)
T ss_pred ecccCCCCccccccccccccchhhHHHhcCCCE
Confidence 9999998 45554 49999996
No 18
>KOG0069|consensus
Probab=100.00 E-value=4.2e-42 Score=314.76 Aligned_cols=202 Identities=42% Similarity=0.676 Sum_probs=174.4
Q ss_pred CCHHHHHHHccCCcEEEeC-CCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHH
Q psy5259 39 MPRDIFIEKLKGCSALLCN-PHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGL 117 (294)
Q Consensus 39 ~~~e~~~~~l~~~d~~~~~-~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~ 117 (294)
.+++++...+.+....+.. ....++.+++.+.+|++|+|.++++|+||||+++|+++||+|+|+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nv--------------- 113 (336)
T KOG0069|consen 49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANV--------------- 113 (336)
T ss_pred cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEecc---------------
Confidence 4555666666666555543 556788999988888888888888888888888888777777666
Q ss_pred HHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccc
Q psy5259 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVIS 197 (294)
Q Consensus 118 ~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g 197 (294)
|+.+..+|||++++++|.+.|++..+++.+++|+| .+......|
T Consensus 114 -----------------------------------p~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g 157 (336)
T KOG0069|consen 114 -----------------------------------PDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLG 157 (336)
T ss_pred -----------------------------------CCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCcccc
Confidence 88888899999999999999999999999999999 444434566
Q ss_pred cccCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccc
Q psy5259 198 DIIGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 198 ~~~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
..+.||||||+|+ +++.+.+++++++++||+|++|||+|++|+|+|
T Consensus 158 --~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~li 235 (336)
T KOG0069|consen 158 --YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLI 235 (336)
T ss_pred --ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHh
Confidence 8999999999999 234456699999999999999999999999999
Q ss_pred ccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259 246 GRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 246 ~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv 294 (294)
|++.| ||++||+++|++||++|+|++|+||||++|| +.++||++++||
T Consensus 236 Nk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnv 296 (336)
T KOG0069|consen 236 NKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNV 296 (336)
T ss_pred hHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccce
Confidence 99999 9999999999999999999999999999999 888999999986
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=1.9e-40 Score=311.51 Aligned_cols=204 Identities=26% Similarity=0.388 Sum_probs=166.1
Q ss_pred CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG 83 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G 83 (294)
|||++++ ++| ...+.|++..+++.++.+ ..+.+ .++++|++++++.+++++++++ +|+||+|+++++|
T Consensus 1 mkIl~d~-~~~---~~~~~~~~~~ev~~~~~~--~~~~~----~l~daD~liv~s~t~v~~~ll~--~~~Lk~I~~~~~G 68 (378)
T PRK15438 1 MKILVDE-NMP---YARELFSRLGEVKAVPGR--PIPVA----QLADADALMVRSVTKVNESLLA--GKPIKFVGTATAG 68 (378)
T ss_pred CEEEEeC-Ccc---hHHHHHhhcCcEEEeCCC--CCCHH----HhCCCcEEEEcCCCCCCHHHhc--CCCCeEEEECccc
Confidence 4799998 576 444666766788877654 34544 5789999999877899999996 4899999999999
Q ss_pred CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259 84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF 163 (294)
Q Consensus 84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~ 163 (294)
+||||.+.++++||.|+|+ ||+++.+||||
T Consensus 69 ~D~iD~~~~~~~gI~v~na--------------------------------------------------pg~na~aVAE~ 98 (378)
T PRK15438 69 TDHVDEAWLKQAGIGFSAA--------------------------------------------------PGCNAIAVVEY 98 (378)
T ss_pred ccccCHHHHHHCCCEEEEC--------------------------------------------------CCcCchHHHHH
Confidence 9999998888888777777 66667777777
Q ss_pred HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-------CC
Q psy5259 164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-------LG 215 (294)
Q Consensus 164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-------~~ 215 (294)
+++++|++.|+ .| .+|.|||+||||+ + ..
T Consensus 99 ~~~~lL~l~r~---------------------~g--~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~ 155 (378)
T PRK15438 99 VFSSLLMLAER---------------------DG--FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDE 155 (378)
T ss_pred HHHHHHHHhcc---------------------CC--CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccc
Confidence 77777777664 12 5677888888888 1 11
Q ss_pred CcccCHHHHhccCCEEEEecCCCcc----cccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259 216 AQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI 278 (294)
Q Consensus 216 ~~~~~l~ell~~sDvV~l~~p~t~~----T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~ 278 (294)
..+.+|++++++||+|++|+|+|++ |+||||++.| ||++||++||+++|++|++.+|+||||+
T Consensus 156 ~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e 235 (378)
T PRK15438 156 GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWE 235 (378)
T ss_pred cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCC
Confidence 2456899999999999999999996 9999999999 9999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCCC
Q psy5259 279 PEPMPADHPLVQLDN 293 (294)
Q Consensus 279 ~EP~~~~~~l~~~~n 293 (294)
+||.+ +++|+.+++
T Consensus 236 ~EP~~-~~~Ll~~~~ 249 (378)
T PRK15438 236 GEPEL-NVELLKKVD 249 (378)
T ss_pred CCCCC-chhhhhcCC
Confidence 99964 578887654
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.5e-39 Score=302.98 Aligned_cols=204 Identities=26% Similarity=0.413 Sum_probs=164.7
Q ss_pred CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG 83 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G 83 (294)
|||++.+ ++|.. .+.|++..++...+.+ ..+. +.++++|++++++.+++++++|+ +++||+|++.++|
T Consensus 1 mkI~~d~-~~p~~---~~~~~~~~~v~~~~~~--~~~~----~~l~daD~liv~~~t~v~~~ll~--~~~Lk~I~~~~~G 68 (381)
T PRK00257 1 MKIVADE-NIPLL---DAFFAGFGEIRRLPGR--AFDR----AAVRDADVLLVRSVTRVDRALLE--GSRVRFVGTCTIG 68 (381)
T ss_pred CEEEEec-CchhH---HHHHhhCCcEEEcCCc--ccCH----HHhCCceEEEEeCCCCCCHHHhc--CCCCeEEEECCcc
Confidence 6899999 58744 4555555677766543 2333 36799999998877899999997 3789999999999
Q ss_pred CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259 84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF 163 (294)
Q Consensus 84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~ 163 (294)
+||||.++++++||.|+|+ ||+++.+||||
T Consensus 69 ~D~iD~~~~~~~gI~v~na--------------------------------------------------pg~na~aVAE~ 98 (381)
T PRK00257 69 TDHLDLDYFAEAGITWSSA--------------------------------------------------PGCNARGVVDY 98 (381)
T ss_pred ccccCHHHHHHCCCEEEEC--------------------------------------------------CCcChHHHHHH
Confidence 9999888888777777777 66777777777
Q ss_pred HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-------CC
Q psy5259 164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-------LG 215 (294)
Q Consensus 164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-------~~ 215 (294)
+++++|++.|+ .| +++.||||||||+ + ..
T Consensus 99 v~~~lL~l~r~---------------------~g--~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~ 155 (381)
T PRK00257 99 VLGSLLTLAER---------------------EG--VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGD 155 (381)
T ss_pred HHHHHHHHhcc---------------------cC--CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccC
Confidence 77777777653 12 5778888888888 1 11
Q ss_pred CcccCHHHHhccCCEEEEecCCCc----ccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259 216 AQLVPLDTLCAQSDFIFVTCALTK----DTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI 278 (294)
Q Consensus 216 ~~~~~l~ell~~sDvV~l~~p~t~----~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~ 278 (294)
..+.+|++++++||+|++|+|+|+ +|+||||++.| ||++||++||+++|++|++.+|+||||+
T Consensus 156 ~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e 235 (381)
T PRK00257 156 GDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWE 235 (381)
T ss_pred ccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCC
Confidence 245689999999999999999999 59999999998 9999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCCCC
Q psy5259 279 PEPMPADHPLVQLDNC 294 (294)
Q Consensus 279 ~EP~~~~~~l~~~~nv 294 (294)
+||. .++||+++ ||
T Consensus 236 ~EP~-~~~~L~~~-nv 249 (381)
T PRK00257 236 GEPQ-IDLELADL-CT 249 (381)
T ss_pred CCCC-CChhhhhC-CE
Confidence 9995 46889875 53
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=6e-39 Score=296.06 Aligned_cols=221 Identities=19% Similarity=0.274 Sum_probs=173.3
Q ss_pred eEEEecCCCCCCchhHHHhhc---cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259 5 KLLLTRNDYPRVSPAYDILED---MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS 81 (294)
Q Consensus 5 kvl~~~~~~~~~~~~~~~l~~---~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~ 81 (294)
.+++..+... .+...+.|++ ..++..+... ..+++|+++++. .+.++++ .|+||+|++.+
T Consensus 2 ~~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~-----------~~~~a~~~~~~~---~~~~~l~--~~~Lk~I~~~~ 64 (312)
T PRK15469 2 DIIFYHPTFD-TQWWIEALRKALPQARVRAWKSG-----------DNDPADYALVWH---PPVEMLA--GRDLKAVFALG 64 (312)
T ss_pred EEEEeCCccC-HHHHHHHHHHHCCCCeEEecCCC-----------CCccCeEEEEeC---CChHHhc--cCCceEEEEcc
Confidence 5676664322 1225566655 4455443221 147889988864 2567775 37999999999
Q ss_pred ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeC-CCchHHH
Q psy5259 82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAV 160 (294)
Q Consensus 82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~-~~~~~~V 160 (294)
+|+|++| +.+++. ..+..+||.|+|.+ +.++.+|
T Consensus 65 aG~d~i~-~~~~~~--------------------------------------------~~~~~~~i~v~~~~~~~~~~~v 99 (312)
T PRK15469 65 AGVDSIL-SKLQAH--------------------------------------------PEMLDPSVPLFRLEDTGMGEQM 99 (312)
T ss_pred cccchhh-hhhccc--------------------------------------------cccCCCCceEEEecCCcccHHH
Confidence 9999887 333311 12345677777766 3689999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCCC------------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELGA------------ 216 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~~------------ 216 (294)
|||+++++|++.|++..+.+.++++.|... .+ .+++|||+||||+ .++.
T Consensus 100 AE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~--~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~ 172 (312)
T PRK15469 100 QEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PE--YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW 172 (312)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CC--CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence 999999999999999999999999999642 23 6899999999999 1111
Q ss_pred -------cccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259 217 -------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV 276 (294)
Q Consensus 217 -------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV 276 (294)
...+|++++++||+|++|+|+|++|+|+||++.| ||++|||+||++||++|+|+||+|||
T Consensus 173 ~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDV 252 (312)
T PRK15469 173 PGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDV 252 (312)
T ss_pred CCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecC
Confidence 1247999999999999999999999999999888 99999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCCC
Q psy5259 277 MIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 277 ~~~EP~~~~~~l~~~~nv 294 (294)
|++||+|.++|||++|||
T Consensus 253 f~~EPl~~~~pl~~~~nv 270 (312)
T PRK15469 253 FSREPLPPESPLWQHPRV 270 (312)
T ss_pred CCCCCCCCCChhhcCCCe
Confidence 999999999999999996
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-37 Score=283.23 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=158.4
Q ss_pred eEEEecCCCCCCchhHHHhhc---cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259 5 KLLLTRNDYPRVSPAYDILED---MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS 81 (294)
Q Consensus 5 kvl~~~~~~~~~~~~~~~l~~---~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~ 81 (294)
++++..+ ++ +...+.+.+ .++++..+ .+.++|++++... .+ .+++||+|++.+
T Consensus 2 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~a~~~~~~~~------~~--~~~~Lk~I~~~~ 57 (303)
T PRK06436 2 NVYVNFP-MS--KKLLEICRDILDLDDVHWYP-------------DYYDAEAILIKGR------YV--PGKKTKMIQSLS 57 (303)
T ss_pred eEEEEcc-CC--HHHHHHHHhhcccceeEecc-------------ccCCCCEEEecCC------cC--CCCCeEEEEECC
Confidence 3555553 66 777776544 45555422 2457777755421 11 136677777777
Q ss_pred ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259 82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 161 (294)
Q Consensus 82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA 161 (294)
+|+|++|.+.+++++ +.+++ ++.++.+||
T Consensus 58 aG~D~id~~~~~~~~--------------------------------------------------i~~~~-~g~~~~~VA 86 (303)
T PRK06436 58 AGVDHIDVSGIPENV--------------------------------------------------VLCSN-AGAYSISVA 86 (303)
T ss_pred cccCcccHHHHHhCC--------------------------------------------------eEEEc-CCCCcHHHH
Confidence 776666666665444 44433 367789999
Q ss_pred HHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-----CC
Q psy5259 162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-----LG 215 (294)
Q Consensus 162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-----~~ 215 (294)
||+++++|++.|++.++.+.+++|.|.+. .+ ++|+|||+||+|+ + .+
T Consensus 87 E~~l~l~L~l~R~i~~~~~~~~~g~w~~~-----~~--~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~ 159 (303)
T PRK06436 87 EHAFALLLAWAKNICENNYNMKNGNFKQS-----PT--KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDG 159 (303)
T ss_pred HHHHHHHHHHHcChHHHHHHHHcCCCCCC-----CC--CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccC
Confidence 99999999999999999999999999742 23 7999999999999 1 11
Q ss_pred C--cccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCC
Q psy5259 216 A--QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280 (294)
Q Consensus 216 ~--~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~E 280 (294)
. .+.++++++++||+|++|||+|++|+|+||++.| ||++||++||+++|++|++.||+||||++|
T Consensus 160 ~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~E 239 (303)
T PRK06436 160 ISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNE 239 (303)
T ss_pred cccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCC
Confidence 1 1468999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCC
Q psy5259 281 PMPADHPLVQLDNC 294 (294)
Q Consensus 281 P~~~~~~l~~~~nv 294 (294)
|+++++ .+|||
T Consensus 240 P~~~~~---~~~nv 250 (303)
T PRK06436 240 PIITET---NPDNV 250 (303)
T ss_pred CCCccC---CCCCE
Confidence 988765 57875
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.97 E-value=8.3e-33 Score=236.18 Aligned_cols=126 Identities=44% Similarity=0.695 Sum_probs=109.5
Q ss_pred HHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------------
Q psy5259 165 IGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------------------------- 212 (294)
Q Consensus 165 l~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------------------------- 212 (294)
++++|++.|++..+++.++++.|.. .....+ ++++||||||+|+
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~--~~~~~~--~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~ 76 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWAS--RERFPG--RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD 76 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHH--HTTTTB--S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCC--CcCCCc--cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc
Confidence 5789999999999999999999921 112445 8999999999999
Q ss_pred cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259 213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIP 279 (294)
Q Consensus 213 ~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~ 279 (294)
..++++.+++|++++||+|++|||+|++|+||||++.| ||++|||+||++||++|+|.||+||||++
T Consensus 77 ~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~ 156 (178)
T PF02826_consen 77 EFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEP 156 (178)
T ss_dssp HTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SS
T ss_pred cccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCC
Confidence 23445679999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCC
Q psy5259 280 EPMPADHPLVQLDNC 294 (294)
Q Consensus 280 EP~~~~~~l~~~~nv 294 (294)
||++.++|||++|||
T Consensus 157 EP~~~~~~l~~~~nv 171 (178)
T PF02826_consen 157 EPLPADSPLWDLPNV 171 (178)
T ss_dssp SSSSTTHHHHTSTTE
T ss_pred CCCCCCChHHcCCCE
Confidence 999999999999996
No 24
>KOG0067|consensus
Probab=99.79 E-value=4.2e-19 Score=162.25 Aligned_cols=200 Identities=24% Similarity=0.374 Sum_probs=165.3
Q ss_pred hHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcE
Q psy5259 19 AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIR 98 (294)
Q Consensus 19 ~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~ 98 (294)
.+..+.....+-+|+. +.|+|.-.+.|.++-+-+.+....++++.++++
T Consensus 45 emPilk~~atvafcda---qstqeIhekvLneavgam~yh~i~l~reDlEkf---------------------------- 93 (435)
T KOG0067|consen 45 EMPILKDLATVAFCDA---QSTQEIHEKVLNEAVGAMMYHTITLPREDLEKF---------------------------- 93 (435)
T ss_pred cchhhhcchheeeecc---cchHHHHHHHHHHhhhcceeeecccchhhHHHh----------------------------
Confidence 3445566677777776 678887777888877777777778899999865
Q ss_pred EeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhh
Q psy5259 99 VGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 178 (294)
Q Consensus 99 v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~ 178 (294)
+.||++.+.+.|+|++|+.++.+.||.|+|.|+..-+.+|+-++..++.++|+....
T Consensus 94 -----------------------kalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~ 150 (435)
T KOG0067|consen 94 -----------------------KALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWL 150 (435)
T ss_pred -----------------------hhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchh
Confidence 777888888888888888888888888888899999999999999999999999999
Q ss_pred hhhHhcCCCCccccc---cccccccCcCCCEEEEEcc-------------------------------cCCCcc-cCHHH
Q psy5259 179 HNCIASGEWALKQTQ---TVISDIIGLNGSTVGIVGT-------------------------------ELGAQL-VPLDT 223 (294)
Q Consensus 179 ~~~~~~~~w~~~~~~---~~~g~~~~l~gktvgIiG~-------------------------------~~~~~~-~~l~e 223 (294)
.+..++|.|...... ...| ....+|.++|++|+ .++.+. .++++
T Consensus 151 cq~l~eg~~~q~~~q~~e~a~g-~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd 229 (435)
T KOG0067|consen 151 CQALREGTCTQGLEQVREAACG-LARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQD 229 (435)
T ss_pred hhhhcccceeechhhhhhhhhc-cccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccch
Confidence 999999998643211 0111 36789999999997 223333 26999
Q ss_pred HhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEE
Q psy5259 224 LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAG 273 (294)
Q Consensus 224 ll~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~ 273 (294)
++.+||.+|+||.+++.+.|+||.-.+ ||.+||+++|.+||++|+|.+++
T Consensus 230 ~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa 292 (435)
T KOG0067|consen 230 LLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA 292 (435)
T ss_pred hhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc
Confidence 999999999999999999999998777 99999999999999999999988
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.75 E-value=6.3e-18 Score=137.44 Aligned_cols=101 Identities=31% Similarity=0.457 Sum_probs=89.7
Q ss_pred EEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCc
Q psy5259 6 LLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHD 85 (294)
Q Consensus 6 vl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d 85 (294)
||++++ ++ ++.++.|++++++..++. .+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++|+|
T Consensus 1 ili~~~-~~--~~~~~~l~~~~~v~~~~~----~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d 72 (133)
T PF00389_consen 1 ILITDP-LP--DEEIERLEEGFEVEFCDS----PSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVD 72 (133)
T ss_dssp EEESSS--S--HHHHHHHHHTSEEEEESS----SSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCT
T ss_pred eEEecc-CC--HHHHHHHHCCceEEEeCC----CCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccC
Confidence 788984 88 999999999669988763 58889999999999999987767999999998 99999999999999
Q ss_pred ccChhhHhhCCcEEeecCCCChhhhhhhh
Q psy5259 86 HLHLDQIKSRGIRVGTVGPVSSDAVAEFN 114 (294)
Q Consensus 86 ~id~~~~~~~gI~v~~~~~~~~~~vae~~ 114 (294)
++|++.++++||.|+|+||+++++|||++
T Consensus 73 ~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 73 NIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred cccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 99999999999999999999999999997
No 26
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.04 E-value=7.5e-10 Score=89.81 Aligned_cols=45 Identities=44% Similarity=0.570 Sum_probs=41.0
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHH
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFN 164 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~a 164 (294)
.+++||+|+..++|+|++|+++++++||.|+|+||+++.+||||+
T Consensus 57 ~~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 57 AAPNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred ccceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 569999999999999999999999999999999999999999999
No 27
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.03 E-value=9.7e-10 Score=106.07 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=96.8
Q ss_pred eecccccc-ccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEE
Q psy5259 130 FSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVG 208 (294)
Q Consensus 130 ~~~G~d~i-d~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvg 208 (294)
.++|+..+ ........||+|+|+++.+..+++|+++++++++. +..++.+ + ..+.||++|
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~-----------~--~~LaGKtVg 258 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT-----------D--VMIAGKTVV 258 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc-----------C--CCcCCCEEE
Confidence 35555543 22333457899999999999999999999998877 2223322 2 678999999
Q ss_pred EEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc------
Q psy5259 209 IVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------ 250 (294)
Q Consensus 209 IiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~------ 250 (294)
|+|+ ..+++..+++++++.||+|++|. .|+++|+++.|
T Consensus 259 VIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpG 334 (476)
T PTZ00075 259 VCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNN 334 (476)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCC
Confidence 9999 12344568999999999999984 48899999888
Q ss_pred -------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCC
Q psy5259 251 -------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPA 284 (294)
Q Consensus 251 -------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~ 284 (294)
|+ |++.++++|+++. ++|+++.||...
T Consensus 335 AiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 335 AIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred cEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 44 8999999998754 799999999654
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.76 E-value=9.2e-09 Score=94.27 Aligned_cols=87 Identities=26% Similarity=0.269 Sum_probs=64.3
Q ss_pred eEEEeeccccccccc-hhhccCcEEE------eeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccc
Q psy5259 126 VISTFSVGHDHLHLD-QIKSRGIRVG------TVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISD 198 (294)
Q Consensus 126 ~i~~~~~G~d~id~~-~~~~~GI~v~------~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~ 198 (294)
.++...+|+++.+++ .++++||+|+ ++..+++.++||+++++++.. .+
T Consensus 92 ~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~~- 146 (287)
T TIGR02853 92 GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------TD- 146 (287)
T ss_pred CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------cC-
Confidence 344556666666666 6677777777 777899999999999987733 12
Q ss_pred ccCcCCCEEEEEcc--------------------------------cCCCc---ccCHHHHhccCCEEEEecCCC
Q psy5259 199 IIGLNGSTVGIVGT--------------------------------ELGAQ---LVPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 199 ~~~l~gktvgIiG~--------------------------------~~~~~---~~~l~ell~~sDvV~l~~p~t 238 (294)
.+++||+++|+|+ ..+.. +.+++++++++|+|++|+|.+
T Consensus 147 -~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ 220 (287)
T TIGR02853 147 -FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL 220 (287)
T ss_pred -CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH
Confidence 5789999999999 11222 235778899999999999964
No 29
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.82 E-value=0.00016 Score=66.60 Aligned_cols=57 Identities=32% Similarity=0.341 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------
Q psy5259 155 VSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------- 212 (294)
Q Consensus 155 ~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------- 212 (294)
.++.++||.++...+.. .+ .+++|++++|+|+
T Consensus 129 ~ns~~~aegav~~a~~~------------------------~~--~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~ 182 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEH------------------------TP--ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGA 182 (296)
T ss_pred hccHhHHHHHHHHHHHh------------------------CC--CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence 47888888877654311 11 4678899999999
Q ss_pred ----------cCCCcc---cCHHHHhccCCEEEEecCC
Q psy5259 213 ----------ELGAQL---VPLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 213 ----------~~~~~~---~~l~ell~~sDvV~l~~p~ 237 (294)
+.+.+. .++.+.++++|+|+.++|.
T Consensus 183 r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 183 RKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh
Confidence 122222 2467889999999999883
No 30
>PLN02494 adenosylhomocysteinase
Probab=97.81 E-value=1.5e-05 Score=77.26 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=64.4
Q ss_pred cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
..+.||+++|+|+ ..++...+++++++.+|+|+. +..|+++|++
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~~ 325 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIMV 325 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchHH
Confidence 4479999999999 123344578999999999997 5578899999
Q ss_pred ccc-------------c-CcCCCHHHHHHH--HHcCCceEEEeeCCCCC
Q psy5259 248 KQF-------------R-GGLLDQEALVEF--LRDKKIGGAGLDVMIPE 280 (294)
Q Consensus 248 ~~~-------------R-G~lvde~aL~~a--L~~g~i~ga~LDV~~~E 280 (294)
+.| | +..||+++|.++ ++.+.++ +.+|+|+.|
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 888 6 789999999998 9999998 999999985
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.75 E-value=1.3e-05 Score=74.20 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=40.2
Q ss_pred cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
..|+||||||||+ ..+.+..++++++++||+|++|+|. ++|++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 6799999999999 1244556899999999999999996 788888754
Q ss_pred cc
Q psy5259 248 KQ 249 (294)
Q Consensus 248 ~~ 249 (294)
+.
T Consensus 91 ei 92 (335)
T PRK13403 91 EV 92 (335)
T ss_pred HH
Confidence 43
No 32
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.39 E-value=0.00016 Score=69.26 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=61.9
Q ss_pred cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
..+.|++++|+|+ ..+....+++++++.+|+|+.+. .++++|+.
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaT----G~~~vI~~ 266 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITAT----GNKDVIRG 266 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence 3579999999999 12344457899999999997643 46888888
Q ss_pred ccc-------------cCcC-CCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259 248 KQF-------------RGGL-LDQEALVEFLRDKKIGGAGLDVMIP 279 (294)
Q Consensus 248 ~~~-------------RG~l-vde~aL~~aL~~g~i~ga~LDV~~~ 279 (294)
+.| |+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 666 8888 9999999999888888899999884
No 33
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.05 E-value=0.002 Score=60.18 Aligned_cols=95 Identities=25% Similarity=0.343 Sum_probs=59.6
Q ss_pred HHHHccC-CcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHcc
Q psy5259 44 FIEKLKG-CSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122 (294)
Q Consensus 44 ~~~~l~~-~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~ 122 (294)
..+.++. +++...........++.+.. ...+.+.+.. .+.++.+.++ .++
T Consensus 15 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~--~~~i~~~~l~--------------------------~~p 65 (324)
T COG1052 15 VLERLKEKFEVERYEDDLTPDTELAERL-KDADAVITFV--NDRIDAEVLE--------------------------KLP 65 (324)
T ss_pred HHHHhhccEEEEEeccCCccchHHHHHh-cCCcEEEEcC--CCCcCHHHHH--------------------------hCC
Confidence 4444443 56655543211222333332 5556665554 6666666665 569
Q ss_pred CcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHH
Q psy5259 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 171 (294)
Q Consensus 123 ~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~ 171 (294)
+||+|+..++|+|++|+++++++||.| .. ......+.+.=+.+++
T Consensus 66 ~LKlIa~~~~G~D~vDl~aa~~~gI~V---tn-vp~~~t~sVAe~~~aL 110 (324)
T COG1052 66 GLKLIATRSAGYDNVDLEAAKERGITV---TN-VPGYSTEAVAEHAVAL 110 (324)
T ss_pred CcEEEEEeccccCcccHHHHHHCCcEE---Ee-CCCCCchHHHHHHHHH
Confidence 999999999999999999999999999 33 2224445555555554
No 34
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.92 E-value=0.0025 Score=59.72 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=37.4
Q ss_pred Hcc--CcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVK--NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~--~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.++ +||+|++.++|+|++|++.++++||.| .. .....++-+.=+.+++.
T Consensus 64 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n-~~~~~~~~vAE~~~~l~ 114 (330)
T PRK12480 64 KLESYGIKQIAQRTAGFDMYDLDLAKKHNIVI---SN-VPSYSPETIAEYSVSIA 114 (330)
T ss_pred hhhhcCceEEEecccccchhhHHHHHHCCCEE---Ee-CCCCChHHHHHHHHHHH
Confidence 454 899999999999999999999999999 33 23345565555666554
No 35
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.68 E-value=0.0043 Score=57.95 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=38.8
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|++.++|+|++|++++.++||.| .. .....++-+.=+.++++
T Consensus 63 ~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V---~n-~~~~~~~~VAE~~~~l~ 111 (323)
T PRK15409 63 KMPKLRAASTISVGYDNFDVDALTARKILL---MH-TPTVLTETVADTLMALV 111 (323)
T ss_pred hCCCCeEEEECceecccccHHHHHHCCCEE---Ee-CCCCCchHHHHHHHHHH
Confidence 669999999999999999999999999999 33 23345666666666554
No 36
>PLN03139 formate dehydrogenase; Provisional
Probab=96.24 E-value=0.012 Score=56.35 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=37.4
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHH
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 171 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~ 171 (294)
.+++||+|+..++|+|++|++++.++||.| ... ...-++-+.=+.+++
T Consensus 118 ~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V---~n~-~g~na~sVAE~al~l 165 (386)
T PLN03139 118 KAKNLELLLTAGIGSDHIDLPAAAAAGLTV---AEV-TGSNVVSVAEDELMR 165 (386)
T ss_pred hCCCccEEEECCccccccCHHHHHHCCeEE---EEC-CCcCcHHHHHHHHHH
Confidence 579999999999999999999999999999 333 334555555555544
No 37
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.16 E-value=0.0055 Score=56.86 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=38.0
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|+++++++||.| .|. ...++-+.=+.++++
T Consensus 60 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v-----~n~~g~~~~~VAE~a~~l~ 108 (311)
T PRK08410 60 QLPNLKLICITATGTNNVDIEYAKKKGIAV-----KNVAGYSTESVAQHTFAML 108 (311)
T ss_pred hCCCCeEEEEcccccccccHHHHHhCCCEE-----EcCCCCCChHHHHHHHHHH
Confidence 568999999999999999999999999999 333 345555555555554
No 38
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.08 E-value=0.02 Score=53.69 Aligned_cols=49 Identities=24% Similarity=0.469 Sum_probs=37.4
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|++.+.++||.| ... ....++-+.=+.+++.
T Consensus 64 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-~g~~~~~vAE~~~~l~ 112 (333)
T PRK13243 64 AAPRLRIVANYAVGYDNIDVEEATRRGIYV---TNT-PGVLTEATADFAWALL 112 (333)
T ss_pred hCCCCeEEEecCccccccCHHHHHHcCCEE---EEC-CCCChHHHHHHHHHHH
Confidence 569999999999999999999999999999 332 2334555555555543
No 39
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.93 E-value=0.0097 Score=55.34 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=37.5
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|++.+.++||.| ... ....++-+.=+.+++.
T Consensus 62 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-~g~~~~~vAE~~i~l~ 110 (314)
T PRK06932 62 QLPKLKLIAITATGTNNVDLVAAKELGIAV---KNV-TGYSSTTVPEHVLGMI 110 (314)
T ss_pred hCcCCeEEEEecccccccCHHHHHhCCCEE---EeC-CCCChhHHHHHHHHHH
Confidence 569999999999999999999999999998 332 2334555555555544
No 40
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.92 E-value=0.0086 Score=55.74 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=37.6
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|++.+.++||.| .... ...++-+.=+.++++
T Consensus 63 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~~-g~~~~~vAE~~~~~~ 111 (317)
T PRK06487 63 AAPQLKLILVAATGTNNVDLAAARERGITV---CNCQ-GYGTPSVAQHTLALL 111 (317)
T ss_pred hCCCCeEEEEcCccccccCHHHHHHCCCEE---EeCC-CCCcchHHHHHHHHH
Confidence 568999999999999999999999999999 3332 234555555555554
No 41
>PRK08605 D-lactate dehydrogenase; Validated
Probab=95.78 E-value=0.021 Score=53.56 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=32.1
Q ss_pred HccC--cceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHH
Q psy5259 120 AVKN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAV 171 (294)
Q Consensus 120 ~~~~--Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~ 171 (294)
++++ ||+|++.++|+|++|++.++++| +.=.+. ..-++-+.=+.+++
T Consensus 64 ~~~~~~lk~I~~~~~G~d~id~~~~~~~g-----i~v~n~~~~~~~~vAE~~~~~ 113 (332)
T PRK08605 64 LLNELGIKQIAQRSAGFDTYDLELATKYN-----LIISNVPSYSPESIAEFTVTQ 113 (332)
T ss_pred hhhhcCceEEEEcccccchhhHHHHHHCC-----CEEEeCCCCChHHHHHHHHHH
Confidence 4554 99999999999999999998875 111222 33455555555554
No 42
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.66 E-value=0.058 Score=52.19 Aligned_cols=98 Identities=9% Similarity=0.107 Sum_probs=59.8
Q ss_pred eecccccc-ccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEE
Q psy5259 130 FSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVG 208 (294)
Q Consensus 130 ~~~G~d~i-d~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvg 208 (294)
.++|+..+ ......+.+++|.|++..+.++.-|... ...++.|+.... ..+ ..+.|++++
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~---------------gt~~s~~~ai~r--at~--~~l~Gk~Vl 216 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRY---------------GTGESLLDGIKR--ATN--VLIAGKVVV 216 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccH---------------HHHhhhHHHHHH--hcc--CCCCCCEEE
Confidence 35555443 2233345789999999866655433222 223333431100 112 457899999
Q ss_pred EEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 209 IVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 209 IiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
|+|+ ..+.+..+++++++.+|+|+.+. .+.++|+.+.|
T Consensus 217 ViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~ 286 (425)
T PRK05476 217 VAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHM 286 (425)
T ss_pred EECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHH
Confidence 9999 12334557899999999998754 45678887666
No 43
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.43 E-value=0.037 Score=53.33 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=37.8
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~~ 172 (294)
++++||+|++.++|+|++|+++++++||.| .+. ...++-+.=+.++++
T Consensus 72 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V-----~n~pg~~~~aVAE~~i~l~ 120 (409)
T PRK11790 72 AAEKLVAIGCFCIGTNQVDLDAAAKRGIPV-----FNAPFSNTRSVAELVIGEI 120 (409)
T ss_pred hCCCCeEEEECceecccccHHHHHhCCCEE-----EeCCCCChHHHHHHHHHHH
Confidence 568999999999999999999999999999 443 334555555555553
No 44
>PRK07574 formate dehydrogenase; Provisional
Probab=95.34 E-value=0.051 Score=51.96 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=37.6
Q ss_pred HHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 119 l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
..+++||+|+..++|+|++|++++.++||.| ... ....++-+.=..+++.
T Consensus 110 ~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V---~n~-~g~~a~~VAE~al~l~ 159 (385)
T PRK07574 110 AKAPNLKLAITAGIGSDHVDLQAASEHGITV---AEV-TGSNSISVAEHVVMMI 159 (385)
T ss_pred hhCCCCcEEEECCcccccccHHHHHHCCcEE---EcC-CCCchHHHHHHHHHHH
Confidence 3679999999999999999999999999999 332 2344554444555443
No 45
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.30 E-value=0.0082 Score=56.10 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=35.9
Q ss_pred cCcCCCEEEEEcc---------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccc
Q psy5259 200 IGLNGSTVGIVGT---------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 200 ~~l~gktvgIiG~---------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~ 246 (294)
..++||+|||||+ ..+....+.++++++||+|++++|.+.. ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 6789999999999 1234445889999999999999996654 55543
No 46
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=95.23 E-value=0.015 Score=56.38 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=43.3
Q ss_pred cCcCCCEEEEEcc--------------------------------------cCCCcccCHHHHhccCCEEEEecCCCccc
Q psy5259 200 IGLNGSTVGIVGT--------------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDT 241 (294)
Q Consensus 200 ~~l~gktvgIiG~--------------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T 241 (294)
..|+||||+|||+ +.+....+++|+++.||+|++.+|.+ +
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-~- 109 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-Q- 109 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH-H-
Confidence 6799999999999 02234457999999999999999988 3
Q ss_pred ccccccccccCcCCCHHHHHHHHHcCCceE
Q psy5259 242 EQLIGRKQFRGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 242 ~~li~~~~~RG~lvde~aL~~aL~~g~i~g 271 (294)
++.++ +.+...|+.|...+
T Consensus 110 q~~v~-----------~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 110 HSDVV-----------RAVQPLMKQGAALG 128 (487)
T ss_pred HHHHH-----------HHHHhhCCCCCEEE
Confidence 66654 44455555555443
No 47
>PLN02928 oxidoreductase family protein
Probab=95.08 E-value=0.025 Score=53.35 Aligned_cols=50 Identities=26% Similarity=0.419 Sum_probs=37.0
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH--HHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA--VAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~--VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|++++.++||.| ....+.. .++-+.-+.+++.
T Consensus 79 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~~~~~~~~~~~vAE~av~l~ 130 (347)
T PLN02928 79 RASQMKLIMQFGVGLEGVDVDAATKHGIKV---ARIPSEGTGNAASCAEMAIYLM 130 (347)
T ss_pred cCCCceEEEECCcccCcCcHHHHHhCCCEE---EECCCCCCcChHHHHHHHHHHH
Confidence 469999999999999999999999999999 3322321 3455555555443
No 48
>KOG0069|consensus
Probab=95.06 E-value=0.016 Score=54.07 Aligned_cols=64 Identities=34% Similarity=0.470 Sum_probs=46.3
Q ss_pred HHHHHHc-cCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcC
Q psy5259 115 IGLAIAV-KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASG 185 (294)
Q Consensus 115 ~~~~l~~-~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~ 185 (294)
..++.+. +++|+|...++|+|++|+++|++|||+| +....+..+-+.-+.+++ +....+....+
T Consensus 75 ~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V----~nvp~~~~~~vAd~~~~l---il~~~R~~~~g 139 (336)
T KOG0069|consen 75 KELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRV----ANVPDVLTDDVADLAVSL---LLALLRRFSEG 139 (336)
T ss_pred HhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceE----eccCCcchHHHHHHHHHH---HHHHHhhhhhh
Confidence 3444555 8999999999999999999999999999 555666667666665544 33444443333
No 49
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.04 E-value=0.061 Score=53.60 Aligned_cols=48 Identities=35% Similarity=0.398 Sum_probs=37.9
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~~ 172 (294)
.+++||||++.++|+|++|++++.++||.| .|+ ...++-+.=+.+++.
T Consensus 61 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V-----~n~p~~~~~~vAE~~l~l~ 109 (526)
T PRK13581 61 AAKNLKVIGRAGVGVDNVDVPAATRRGIIV-----VNAPTGNTISAAEHTIALM 109 (526)
T ss_pred hCCCCeEEEECCcccccccHHHHHHCCCEE-----EeCCCCChHHHHHHHHHHH
Confidence 569999999999999999999999999999 443 345555555555554
No 50
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.97 E-value=0.055 Score=53.89 Aligned_cols=49 Identities=29% Similarity=0.327 Sum_probs=37.9
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||||++.++|+|++|++++.++||.| ... ....++-+.=+.++++
T Consensus 59 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V---~n~-pg~~~~~vAE~~~~l~ 107 (525)
T TIGR01327 59 AAPKLKVIGRAGVGVDNIDIEAATARGILV---VNA-PTGNTISAAEHALAML 107 (525)
T ss_pred hCCCceEEEECCcccchhcHHHHHHCCCEE---EeC-CCcChHHHHHHHHHHH
Confidence 569999999999999999999999999999 222 2345555555555554
No 51
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.95 E-value=0.075 Score=49.68 Aligned_cols=68 Identities=28% Similarity=0.365 Sum_probs=45.1
Q ss_pred HhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHH
Q psy5259 92 IKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 171 (294)
Q Consensus 92 ~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~ 171 (294)
+++.++.+.....+..+-++ +.++||+|++.++|+|++|+++++++||.| .. ....-+..+.=+.+++
T Consensus 43 ~~~~d~~~~~~~~v~~~~l~--------~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V---~n-ap~~na~~vAE~~~~~ 110 (324)
T COG0111 43 LADADALIVSVTPVTEEVLA--------AAPNLKAIGRAGAGVDNIDLEAATKRGILV---VN-APGGNAISVAELVLAL 110 (324)
T ss_pred cccCcEEEEecCCCCHHHHh--------hCCCceEEEEccccccccCHHHHhhcCCEE---Ee-CCCcchHHHHHHHHHH
Confidence 34555444444444444444 568999999999999999999999999999 22 2233344444444444
No 52
>KOG0067|consensus
Probab=94.00 E-value=0.044 Score=51.49 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=47.3
Q ss_pred eEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHc-cCcceEE
Q psy5259 75 KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-KNLKVIS 128 (294)
Q Consensus 75 k~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~-~~Lk~i~ 128 (294)
|++...+-|+|++|+.++.+-||.|||.|+...+.+|+.++.+++.+ +.-.|..
T Consensus 97 Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~c 151 (435)
T KOG0067|consen 97 RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLC 151 (435)
T ss_pred ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhh
Confidence 56667778999999999999999999999999999999999999876 5555554
No 53
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.88 E-value=0.04 Score=51.17 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=52.6
Q ss_pred HhhCCcEEeecC-CCChhhhhhhhHHHHHHc-cCcceEEEeeccccccccchhhccCcEEEeeC-CCchHHHHHHHHHH
Q psy5259 92 IKSRGIRVGTVG-PVSSDAVAEFNIGLAIAV-KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIGL 167 (294)
Q Consensus 92 ~~~~gI~v~~~~-~~~~~~vae~~~~~~l~~-~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~-~~~~~~VAE~al~l 167 (294)
+..+||.++|++ +.++.+|||+++++++++ |++...........+-......-+|.+|...+ |..+..+|+...++
T Consensus 80 ~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af 158 (312)
T PRK15469 80 MLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW 158 (312)
T ss_pred cCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 457899999986 468999999999999987 88754432211111111122345678888866 77899999988865
No 54
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=93.87 E-value=0.049 Score=45.64 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=26.6
Q ss_pred cCCCEEEEEcc---------------------------------cCCCcccCHHHHhccCCEEEEecC
Q psy5259 202 LNGSTVGIVGT---------------------------------ELGAQLVPLDTLCAQSDFIFVTCA 236 (294)
Q Consensus 202 l~gktvgIiG~---------------------------------~~~~~~~~l~ell~~sDvV~l~~p 236 (294)
|+||+|.|||| +.|.+..+..|..+.||+|.+.+|
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCC
Confidence 57899999999 456677799999999999999999
No 55
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.79 E-value=0.12 Score=49.30 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=27.8
Q ss_pred ccCcceEEEeeccccccccchhhccCcEE
Q psy5259 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRV 149 (294)
Q Consensus 121 ~~~Lk~i~~~~~G~d~id~~~~~~~GI~v 149 (294)
.++||+|+..++|+|++|++.+.++||.|
T Consensus 56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v 84 (381)
T PRK00257 56 GSRVRFVGTCTIGTDHLDLDYFAEAGITW 84 (381)
T ss_pred CCCCeEEEECCccccccCHHHHHHCCCEE
Confidence 47999999999999999999999999999
No 56
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.57 E-value=0.08 Score=48.59 Aligned_cols=57 Identities=25% Similarity=0.202 Sum_probs=49.2
Q ss_pred CCCHHHHhhcCCCceEEEeccccCcccChh-hHhhCCcEEe------ecCCCChhhhhhhhHHHHHHc
Q psy5259 61 KVDKEALDESGENLKVISTFSVGHDHLHLD-QIKSRGIRVG------TVGPVSSDAVAEFNIGLAIAV 121 (294)
Q Consensus 61 ~~~~~~l~~~~~~lk~i~~~~~G~d~id~~-~~~~~gI~v~------~~~~~~~~~vae~~~~~~l~~ 121 (294)
++++++|+.. | .++...+|+++.+++ .++++||.+. +++.+|+.++||.++.+++..
T Consensus 81 ~l~~~~l~~~-~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~ 144 (287)
T TIGR02853 81 VLTPELLEST-K---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH 144 (287)
T ss_pred cccHHHHHhc-C---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh
Confidence 4678999876 3 366778899999999 8899999999 999999999999999888754
No 57
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=93.00 E-value=0.12 Score=49.42 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=28.3
Q ss_pred HccCcceEEEeeccccccccchhhccCcEE
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRV 149 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v 149 (294)
..++||+|+..++|+|++|++.+.++||.|
T Consensus 55 ~~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v 84 (378)
T PRK15438 55 AGKPIKFVGTATAGTDHVDEAWLKQAGIGF 84 (378)
T ss_pred cCCCCeEEEECcccccccCHHHHHHCCCEE
Confidence 358999999999999999999999999999
No 58
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=92.35 E-value=0.15 Score=47.50 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=18.2
Q ss_pred CcccCHHHHhccCCEEEEecCCC
Q psy5259 216 AQLVPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 216 ~~~~~l~ell~~sDvV~l~~p~t 238 (294)
....+..+++++||+|++++|-.
T Consensus 48 v~~~s~~ea~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 48 FKVGTVEEAIPQADLIMNLLPDE 70 (314)
T ss_pred CEECCHHHHHhcCCEEEEeCCcH
Confidence 33456888899999999999933
No 59
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=92.35 E-value=4.2 Score=33.02 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCCCeEEEecCCCCCCchhH----HHhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCC
Q psy5259 1 MSKPKLLLTRNDYPRVSPAY----DILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNP 58 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~----~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~ 58 (294)
|++++||+..+.-....-.. ..|+. +|++++... ..+.|++.+.+. ++|++..+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~---~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV---MTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHHcCCCEEEEcC
Confidence 88999888764222112111 22333 899998876 478899998774 478887764
No 60
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.66 E-value=0.22 Score=45.70 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=40.3
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|+|. ..++ +..+|.+.+++||+|+.+.| +.++|+++.+ .|.+|
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG----~~~~i~~~~ik~gavV 226 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVG----KRNVLTADMVKPGATV 226 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCC----CcCccCHHHcCCCCEE
Confidence 6789999999999 1222 22369999999999999999 5678999888 44443
No 61
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.28 E-value=0.22 Score=45.76 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=44.3
Q ss_pred cCcCCCEEEEEcc---------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccc
Q psy5259 200 IGLNGSTVGIVGT---------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 200 ~~l~gktvgIiG~---------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~ 246 (294)
.-|.||||+|||| +.|.+..+.+|+.++||+|.+.+|-..+..
T Consensus 14 ~~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~---- 89 (338)
T COG0059 14 DLLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKE---- 89 (338)
T ss_pred hHhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHH----
Confidence 4589999999999 345566789999999999999999333211
Q ss_pred cccccCcCCCHHHHHHHHHcCCceEE
Q psy5259 247 RKQFRGGLLDQEALVEFLRDKKIGGA 272 (294)
Q Consensus 247 ~~~~RG~lvde~aL~~aL~~g~i~ga 272 (294)
|=++.+.--|+.|+..++
T Consensus 90 --------vy~~~I~p~Lk~G~aL~F 107 (338)
T COG0059 90 --------VYEKEIAPNLKEGAALGF 107 (338)
T ss_pred --------HHHHHhhhhhcCCceEEe
Confidence 345566666777765443
No 62
>PLN02306 hydroxypyruvate reductase
Probab=89.12 E-value=0.29 Score=46.85 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=36.1
Q ss_pred Hcc--CcceEEEeeccccccccchhhccCcEEEeeCCCchH-HHHHHHHHHHHHHh
Q psy5259 120 AVK--NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD-AVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~--~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~-~VAE~al~l~l~~~ 172 (294)
+++ +||+|+..++|+|++|+++++++||+| .+.. ..++-+.=+.+++.
T Consensus 81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V-----~n~pg~~~~~VAE~al~li 131 (386)
T PLN02306 81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAV-----GNTPGVLTETTAELAASLS 131 (386)
T ss_pred hCCcCCceEEEECCcccccccHHHHHHCCCEE-----EECCCcCHHHHHHHHHHHH
Confidence 455 479999999999999999999999999 3333 34555555555543
No 63
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=89.04 E-value=0.88 Score=40.22 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=80.1
Q ss_pred CeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHcc-CCcEEEeCCCCCCCHHHHhhcC------CCce
Q psy5259 4 PKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLK-GCSALLCNPHQKVDKEALDESG------ENLK 75 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~-~~d~~~~~~~~~~~~~~l~~~~------~~lk 75 (294)
|+||+|.| -+......+.|++ +++++.++........+...+.+. .+|.++..+..-+.. +...+ .+++
T Consensus 1 m~VLvTRp-~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~naV~~--~~~~~~~~~~~~~~~ 77 (240)
T PRK09189 1 MRVLVTRP-EPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAEAVRH--LAALGERLLPHLALP 77 (240)
T ss_pred CeEEEECC-CCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHHHHHH--HHhcchhhHHhcCCe
Confidence 57999997 5533455577777 788888776431222233333444 467776543322221 11110 2233
Q ss_pred EEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCC
Q psy5259 76 VISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV 155 (294)
Q Consensus 76 ~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~ 155 (294)
+++ +|= --.+.+++.|+..-..+..+++.++++..... ...-+++...|.+....-.+.++++|+.|....-|
T Consensus 78 ~~a---VG~--~Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~~~--~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY 150 (240)
T PRK09189 78 LFA---VGE--ATAEAARELGFRHVIEGGGDGVRLAETVAAAL--APTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECY 150 (240)
T ss_pred EEE---EcH--HHHHHHHHcCCCCCcCCCCCHHHHHHHHHHhc--CCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEE
Confidence 332 221 12245678888744445567787777643221 35567777777766655567788999887765543
No 64
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=88.92 E-value=10 Score=31.12 Aligned_cols=121 Identities=9% Similarity=0.054 Sum_probs=69.3
Q ss_pred CCCCeEEEecCCCCCCch----hHHHhhc-cceEEEcCCCCCCCCHHHHHHHc--cCCcEEEeCCCCCCCHHHHhhcCCC
Q psy5259 1 MSKPKLLLTRNDYPRVSP----AYDILED-MFDIITYPISEGRMPRDIFIEKL--KGCSALLCNPHQKVDKEALDESGEN 73 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~----~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l--~~~d~~~~~~~~~~~~~~l~~~~~~ 73 (294)
|.+|+|++.-..+.-.+. .-..|++ +|||+.... ..|++|+.+.. ++++++.+++...==.++....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~---~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~l--- 83 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL---FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGL--- 83 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC---cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHH---
Confidence 468999987653332222 2244555 799998766 46888888766 6789888764211111111111
Q ss_pred ceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccc-cccchhhccCcEEEee
Q psy5259 74 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDH-LHLDQIKSRGIRVGTV 152 (294)
Q Consensus 74 lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~-id~~~~~~~GI~v~~~ 152 (294)
.+.|+++|. ..|.....|.=. =|....++.|+.=...
T Consensus 84 ---------------ve~lre~G~---------------------------~~i~v~~GGvip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 84 ---------------VEALREAGV---------------------------EDILVVVGGVIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred ---------------HHHHHHhCC---------------------------cceEEeecCccCchhHHHHHHhCcceeeC
Confidence 123344432 333322222222 2456688889888888
Q ss_pred CCCchHHHHHHHHHHHH
Q psy5259 153 GPVSSDAVAEFNIGLAI 169 (294)
Q Consensus 153 ~~~~~~~VAE~al~l~l 169 (294)
|+.+...+++..+..+-
T Consensus 122 pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 122 PGTPIEEALSDLLTRLG 138 (143)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 88887777777666544
No 65
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=88.76 E-value=0.59 Score=38.25 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=40.3
Q ss_pred cCcCCCEEEEEcc-------------cCCCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLLD 256 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lvd 256 (294)
.++.||++.|+|- ..+.. ..++++..++||+|+.+.+.. ++|+.+.+ .|.+|+
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~----~~i~~~~ikpGa~Vi 97 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP----EKVPTEWIKPGATVI 97 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC----CccCHHHcCCCCEEE
Confidence 6889999999998 11221 126999999999999999844 67888888 565553
No 66
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.66 E-value=0.26 Score=45.57 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.4
Q ss_pred ccCcceEEEeeccccccccchh
Q psy5259 121 VKNLKVISTFSVGHDHLHLDQI 142 (294)
Q Consensus 121 ~~~Lk~i~~~~~G~d~id~~~~ 142 (294)
.++||||+..++|+|++|++.+
T Consensus 47 ~~~Lk~I~~~~aG~D~id~~~~ 68 (303)
T PRK06436 47 GKKTKMIQSLSAGVDHIDVSGI 68 (303)
T ss_pred CCCeEEEEECCcccCcccHHHH
Confidence 3799999999999999999987
No 67
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.44 E-value=2 Score=41.55 Aligned_cols=47 Identities=15% Similarity=0.357 Sum_probs=34.8
Q ss_pred cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
..+.|++++|+|+ .+++...++++.++.+|+|+.+.. +.++|+.
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~~ 273 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIITG 273 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHHH
Confidence 5679999999999 334555678899999999987643 4456666
Q ss_pred ccc
Q psy5259 248 KQF 250 (294)
Q Consensus 248 ~~~ 250 (294)
+.|
T Consensus 274 ~~l 276 (413)
T cd00401 274 EHF 276 (413)
T ss_pred HHH
Confidence 644
No 68
>KOG0068|consensus
Probab=88.38 E-value=0.4 Score=44.81 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=25.0
Q ss_pred CcccChhhHhhCCcEEeecCCCChhhhh
Q psy5259 84 HDHLHLDQIKSRGIRVGTVGPVSSDAVA 111 (294)
Q Consensus 84 ~d~id~~~~~~~gI~v~~~~~~~~~~va 111 (294)
+|++|+++++++||.|-|+|.+|+.++|
T Consensus 81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saA 108 (406)
T KOG0068|consen 81 VDNVDLKAATENGILVVNTPTANSRSAA 108 (406)
T ss_pred ccccChhhHHhCCeEEEeCCCCChHHHH
Confidence 0789999999999999999999999997
No 69
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=86.75 E-value=0.78 Score=41.69 Aligned_cols=51 Identities=25% Similarity=0.396 Sum_probs=34.0
Q ss_pred ccCHHHHhccCCEEEEecCCCcccccccccccc----------cCcCCCHHHHHHHHHcCCce
Q psy5259 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF----------RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~----------RG~lvde~aL~~aL~~g~i~ 270 (294)
+.+++++++++|+|++++|.... .-+....+ .|.+.+.++|.++.+++...
T Consensus 58 ~~~~eell~~~D~Vvi~tp~~~h--~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 58 VVPLDQLATHADIVVEAAPASVL--RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred cCCHHHHhcCCCEEEECCCcHHH--HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 45799999999999999995432 11111111 66666777888877775443
No 70
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=86.00 E-value=0.99 Score=41.13 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=36.9
Q ss_pred ccCHHHHhccCCEEEEecCCCccccccc-ccc-c---c----------cCcCCCHHHHHHHHHcCCce
Q psy5259 218 LVPLDTLCAQSDFIFVTCALTKDTEQLI-GRK-Q---F----------RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t~~T~~li-~~~-~---~----------RG~lvde~aL~~aL~~g~i~ 270 (294)
..+.++++++||+|++++|.++.++.++ +.+ . + +....+.+.+.+.++++.+.
T Consensus 46 ~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 46 AETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred cCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 3478899999999999999887776664 211 1 1 33333456788999886554
No 71
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=85.96 E-value=1 Score=40.25 Aligned_cols=149 Identities=19% Similarity=0.172 Sum_probs=85.6
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCC-----CHHHHHHHccCCcEEEeCCCCCCC--HHHHhhcCC
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRM-----PRDIFIEKLKGCSALLCNPHQKVD--KEALDESGE 72 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~-----~~e~~~~~l~~~d~~~~~~~~~~~--~~~l~~~~~ 72 (294)
|...+||+|.| -+...+..+.|++ +++++.++...... ..+..+..+.++|.++..+..-+. -+.+...++
T Consensus 1 ~~g~~vlvTRp-~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~ 79 (255)
T PRK05752 1 MSGWRLLLTRP-AEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWP 79 (255)
T ss_pred CCCCEEEECCc-HHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCC
Confidence 67789999996 5533455677777 78887765422100 112344667889988876533332 122332222
Q ss_pred ---CceEEEeccccCcccChhhHhhCCcEEeec-CCCChhhhhhhhHH-HHHHccCcceEEEeeccccccccchhhccCc
Q psy5259 73 ---NLKVISTFSVGHDHLHLDQIKSRGIRVGTV-GPVSSDAVAEFNIG-LAIAVKNLKVISTFSVGHDHLHLDQIKSRGI 147 (294)
Q Consensus 73 ---~lk~i~~~~~G~d~id~~~~~~~gI~v~~~-~~~~~~~vae~~~~-~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI 147 (294)
++++++ +|= =-.+.+++.|+.+-.. .+.+++.++++... .......-+++...|.+....-.+.++++|.
T Consensus 80 ~~~~~~~~a---VG~--~Ta~al~~~G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~ 154 (255)
T PRK05752 80 QPPQQPWFS---VGA--ATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGA 154 (255)
T ss_pred CCcCCEEEE---ECH--HHHHHHHHcCCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCC
Confidence 333332 221 1134567889887664 35678877765421 1112345567777777666665677888888
Q ss_pred EEEeeCCC
Q psy5259 148 RVGTVGPV 155 (294)
Q Consensus 148 ~v~~~~~~ 155 (294)
.|....-|
T Consensus 155 ~v~~~~vY 162 (255)
T PRK05752 155 SVDYLELY 162 (255)
T ss_pred EEeEEEEE
Confidence 87766544
No 72
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=85.43 E-value=18 Score=29.17 Aligned_cols=118 Identities=11% Similarity=0.075 Sum_probs=64.0
Q ss_pred CCeEEEecCCCCCCchhH----HHhhc-cceEEEcCCCCCCCCHHHHHHHc--cCCcEEEeCCCCCCCHHHHhhcCCCce
Q psy5259 3 KPKLLLTRNDYPRVSPAY----DILED-MFDIITYPISEGRMPRDIFIEKL--KGCSALLCNPHQKVDKEALDESGENLK 75 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~----~~l~~-~~~v~~~~~~~~~~~~e~~~~~l--~~~d~~~~~~~~~~~~~~l~~~~~~lk 75 (294)
+|||++.....+..+... ..|+. +|+|+.... ..+.|++.+.. .++|++..++...-..+.+...
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~---~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~----- 73 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPL---FQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPAL----- 73 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCC---CCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHH-----
Confidence 577777554222222222 22333 789987655 46888888776 4688888765433233332221
Q ss_pred EEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCC
Q psy5259 76 VISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV 155 (294)
Q Consensus 76 ~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~ 155 (294)
.+.++++|. .+.+++. |...-.-+.+.+++.|+-=+..++.
T Consensus 74 -------------~~~L~~~g~------------------------~~i~viv--GG~~~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 74 -------------RKELDKLGR------------------------PDILVVV--GGVIPPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred -------------HHHHHhcCC------------------------CCCEEEE--eCCCChHhHHHHHHCCCCEEECCCC
Confidence 112232221 1222222 2112233456778888877777888
Q ss_pred chHHHHHHHHHH
Q psy5259 156 SSDAVAEFNIGL 167 (294)
Q Consensus 156 ~~~~VAE~al~l 167 (294)
+...+.++....
T Consensus 115 ~~~~i~~~l~~~ 126 (132)
T TIGR00640 115 PIPESAIFLLKK 126 (132)
T ss_pred CHHHHHHHHHHH
Confidence 888887776653
No 73
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=85.24 E-value=2.4 Score=43.45 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=87.4
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCC-----CHHHHHHHccCCcEEEeCCCCCCCH--HHHhhc-C
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRM-----PRDIFIEKLKGCSALLCNPHQKVDK--EALDES-G 71 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~-----~~e~~~~~l~~~d~~~~~~~~~~~~--~~l~~~-~ 71 (294)
|..|+||+|.| -+...+..+.|++ +++++.++...... ..+..+..+.++|.++..+..-+.. +.+... +
T Consensus 1 ~~~~~VLVTRp-~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~ 79 (656)
T PRK06975 1 ARAFTVVVTRP-DGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWP 79 (656)
T ss_pred CCCCEEEEeCc-HhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCc
Confidence 67899999997 4433456677777 78888775532111 1123446678899988765433321 112211 1
Q ss_pred CCceEEEeccccCcccChhhHhhCCcEEeec-------------CCCChhhhhhhhHHHHHHccCcceEEEeeccccccc
Q psy5259 72 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTV-------------GPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLH 138 (294)
Q Consensus 72 ~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~-------------~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id 138 (294)
.++++++ +|- -..+.+++.||.+-.. +.++++.++++.....-....-+++...|.+....-
T Consensus 80 ~~~~i~A---VG~--~Ta~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L 154 (656)
T PRK06975 80 HALPVAV---VGP--GSVAALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWL 154 (656)
T ss_pred cCCeEEE---ECH--HHHHHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHH
Confidence 2344433 221 1234578888876544 234666666654432200345577777777766665
Q ss_pred cchhhccCcEEEeeCCCc
Q psy5259 139 LDQIKSRGIRVGTVGPVS 156 (294)
Q Consensus 139 ~~~~~~~GI~v~~~~~~~ 156 (294)
.+.++++|..|..+.-|.
T Consensus 155 ~~~L~~~Ga~V~~v~vY~ 172 (656)
T PRK06975 155 AERLREAGAEVELVEAYR 172 (656)
T ss_pred HHHHHHCCCEEEEEeEEE
Confidence 678889998888776553
No 74
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=85.12 E-value=1.2 Score=38.44 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=12.2
Q ss_pred cCcCCCEEEEEcc
Q psy5259 200 IGLNGSTVGIVGT 212 (294)
Q Consensus 200 ~~l~gktvgIiG~ 212 (294)
.+++||+++|+|+
T Consensus 24 ~~l~gk~v~I~G~ 36 (200)
T cd01075 24 DSLEGKTVAVQGL 36 (200)
T ss_pred CCCCCCEEEEECC
Confidence 6899999999999
No 75
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=84.88 E-value=1.4 Score=40.07 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=40.5
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccc-----cc----------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRK-----QF----------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~-----~~----------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP 281 (294)
.++++++++||+|++++|.++.++.++... .+ +......+++.+.+.+..+...---|+-.+|
T Consensus 50 ~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 50 STAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred CCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 468899999999999999888777665322 11 3333334578888877655433333454444
No 76
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=84.81 E-value=0.38 Score=40.03 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=24.0
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
.++.|+.++||+|++++|-.++.+..+..
T Consensus 49 ~s~~e~~~~~dvvi~~v~~~~~v~~v~~~ 77 (163)
T PF03446_consen 49 DSPAEAAEQADVVILCVPDDDAVEAVLFG 77 (163)
T ss_dssp SSHHHHHHHBSEEEE-SSSHHHHHHHHHC
T ss_pred hhhhhHhhcccceEeecccchhhhhhhhh
Confidence 47999999999999999988887776655
No 77
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.10 E-value=1.5 Score=40.27 Aligned_cols=51 Identities=14% Similarity=0.360 Sum_probs=36.7
Q ss_pred cCcCCCEEEEEcc-------------cCC-------CcccCHHHHhccCCEEEEecCCCcccccccccccc-cCcC
Q psy5259 200 IGLNGSTVGIVGT-------------ELG-------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGL 254 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~-------~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~l 254 (294)
.++.||++++||. ..+ -+..++.+..++||+|+.+++-. +++..+.+ .|.+
T Consensus 154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~----~~v~~~~ik~Gav 225 (284)
T PRK14179 154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRG----HFVTKEFVKEGAV 225 (284)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCcc----ccCCHHHccCCcE
Confidence 6899999999999 111 12236999999999999999944 34665555 3443
No 78
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=84.04 E-value=1.7 Score=36.42 Aligned_cols=47 Identities=26% Similarity=0.395 Sum_probs=31.4
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|+|- ..++ +..++++.+++||+|+.+.+- .++|.++.+
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~----~~~i~~~~i 98 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGK----PNLIKADWI 98 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSS----TT-B-GGGS
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeecc----ccccccccc
Confidence 6799999999999 1122 224699999999999999973 467777777
No 79
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.92 E-value=1.5 Score=40.53 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=36.0
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||+++|||. ..++ +..++.++.++||+|+++++-. +++.++.+
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~----~~v~~~~i 221 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRP----RLIDADWL 221 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCCh----hcccHhhc
Confidence 6899999999999 1121 2347999999999999999854 46666656
No 80
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=81.57 E-value=1.4 Score=36.92 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=29.4
Q ss_pred cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
..+.||++.++|| ..+++..+++++++++|+++.+.- .+++|+.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~~ 94 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVITG 94 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccCH
Confidence 5689999999999 346667789999999999887754 3456666
Q ss_pred ccc
Q psy5259 248 KQF 250 (294)
Q Consensus 248 ~~~ 250 (294)
+.|
T Consensus 95 e~~ 97 (162)
T PF00670_consen 95 EHF 97 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 81
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=80.62 E-value=1.6 Score=36.85 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=34.8
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
..+.||++.|+|. ..++ +..++.+.+++||+|+.+.+.. + +|+++.+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~---~-ii~~~~~ 106 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKP---G-LVKGDMV 106 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCC---c-eecHHHc
Confidence 4688999999999 2222 1236888999999999999843 2 6777766
No 82
>PLN02712 arogenate dehydrogenase
Probab=80.01 E-value=1.8 Score=44.44 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=34.5
Q ss_pred cCcCCCEEEEEcc------------c-------------------CCCc-ccCHHHHhc-cCCEEEEecCCCcccccccc
Q psy5259 200 IGLNGSTVGIVGT------------E-------------------LGAQ-LVPLDTLCA-QSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 200 ~~l~gktvgIiG~------------~-------------------~~~~-~~~l~ell~-~sDvV~l~~p~t~~T~~li~ 246 (294)
.++.+++|||||+ . .++. ..+++++++ .+|+|++++| ...+..+++
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi~ 443 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVLK 443 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHHH
Confidence 7889999999999 1 1111 125777776 5899999999 467777766
Q ss_pred c
Q psy5259 247 R 247 (294)
Q Consensus 247 ~ 247 (294)
+
T Consensus 444 ~ 444 (667)
T PLN02712 444 S 444 (667)
T ss_pred H
Confidence 4
No 83
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.38 E-value=14 Score=27.87 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=52.2
Q ss_pred eEEEecCCCCCC-chhHHHhhc-cceEEEc--CCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 5 KLLLTRNDYPRV-SPAYDILED-MFDIITY--PISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 5 kvl~~~~~~~~~-~~~~~~l~~-~~~v~~~--~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
+||+.+. .+.. ....+.+++ +++++.+ +... ......+.+.++.+|.+++. ...++.......
T Consensus 1 ~vliVGG-~~~~~~~~~~~~~~~G~~~~~hg~~~~~-~~~~~~l~~~i~~aD~VIv~-t~~vsH~~~~~v---------- 67 (97)
T PF10087_consen 1 SVLIVGG-REDRERRYKRILEKYGGKLIHHGRDGGD-EKKASRLPSKIKKADLVIVF-TDYVSHNAMWKV---------- 67 (97)
T ss_pred CEEEEcC-CcccHHHHHHHHHHcCCEEEEEecCCCC-ccchhHHHHhcCCCCEEEEE-eCCcChHHHHHH----------
Confidence 4677663 2222 344455555 6787777 2211 11222488899999999986 357776655543
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhh
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 112 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae 112 (294)
.+.+++.|+++-...+.+..++.+
T Consensus 68 --------k~~akk~~ip~~~~~~~~~~~l~~ 91 (97)
T PF10087_consen 68 --------KKAAKKYGIPIIYSRSRGVSSLER 91 (97)
T ss_pred --------HHHHHHcCCcEEEECCCCHHHHHH
Confidence 245788888887776555555543
No 84
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.35 E-value=2.7 Score=38.75 Aligned_cols=52 Identities=15% Similarity=0.331 Sum_probs=36.8
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||+++|||- ..++ +..+++++.++||+|+.+++-.+ ++.+..+ .|.+|
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~----~v~~~~lk~GavV 226 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPE----MVKGDWIKPGATV 226 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChh----hcchheecCCCEE
Confidence 5789999999994 1111 11269999999999999999543 5666656 44443
No 85
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.83 E-value=2.8 Score=38.65 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=38.8
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..+|++..++||+|+.+++-- ++|+.+.+ .|.+|
T Consensus 154 i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp----~~i~~~~ik~gavV 226 (297)
T PRK14186 154 IDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRP----NLIGAEMVKPGAVV 226 (297)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCc----CccCHHHcCCCCEE
Confidence 6889999999998 1111 2236999999999999999833 67888888 44443
No 86
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.80 E-value=2.8 Score=38.41 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=36.6
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|||- ..++ +..+|.+..++||+|+.+++-- ++|+.+.+
T Consensus 153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~----~~i~~~~v 219 (284)
T PRK14170 153 TQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLA----KFVKKDYI 219 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCc----CccCHHHc
Confidence 6899999999999 1111 2236999999999999999843 57888877
No 87
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=78.77 E-value=2.9 Score=38.67 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=39.5
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..++++..++||+|+.+..- + ++|.++.+ .|.+|
T Consensus 163 i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk-~---~~i~~~~vk~gavV 235 (299)
T PLN02516 163 IPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQ-A---MMIKGDWIKPGAAV 235 (299)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCC-c---CccCHHHcCCCCEE
Confidence 6889999999998 1121 223699999999999999874 2 78888888 45544
No 88
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=78.31 E-value=4 Score=36.98 Aligned_cols=143 Identities=11% Similarity=0.040 Sum_probs=83.8
Q ss_pred CeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC-C---CHHHHHHHccCCcEEEeCCCCCCCH--HHHhh-cCCCce
Q psy5259 4 PKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR-M---PRDIFIEKLKGCSALLCNPHQKVDK--EALDE-SGENLK 75 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~-~---~~e~~~~~l~~~d~~~~~~~~~~~~--~~l~~-~~~~lk 75 (294)
.+||+|.| -+...+..+.|++ +++++.++..... . ..+..++++.++|.++..+..-+.. +.++. ...+++
T Consensus 19 ~~IlvTRp-~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~~~~~~~~~ 97 (266)
T PRK08811 19 WTLISLRP-SGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVRAAHRLLPLQRPARAH 97 (266)
T ss_pred CEEEEeCC-HHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHHHHHHHhcccCccCCe
Confidence 58999996 4433455677777 7888877653200 1 1223446778999988764322211 11111 123444
Q ss_pred EEEeccccCcccChhhHhhCCcEEeec-CCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCC
Q psy5259 76 VISTFSVGHDHLHLDQIKSRGIRVGTV-GPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGP 154 (294)
Q Consensus 76 ~i~~~~~G~d~id~~~~~~~gI~v~~~-~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~ 154 (294)
+.+. |-+ -.+++++.|+..-.. ++.+++.++++. ....+.-|+....+.|....-.+.+.++|..|....-
T Consensus 98 ~~AV-G~~----TA~aL~~~G~~~~~~P~~~~se~Ll~l~---~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~~V~~~~v 169 (266)
T PRK08811 98 WLSV-GEG----TARALQACGIDEVVRPTRMDSEGLLALP---LAQAPLQAVGLITAPGGRGLLAPTLQQRGARILRADV 169 (266)
T ss_pred EEEE-CHH----HHHHHHHcCCCceeCCCCCCcHHHHhCh---hhhCCCCEEEEEeCCCcHHHHHHHHHHCCCEEeEEEE
Confidence 4332 111 124567889876665 456888888873 2223566766666666665546778899988877664
Q ss_pred C
Q psy5259 155 V 155 (294)
Q Consensus 155 ~ 155 (294)
|
T Consensus 170 Y 170 (266)
T PRK08811 170 Y 170 (266)
T ss_pred E
Confidence 4
No 89
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.25 E-value=3.1 Score=38.16 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=36.2
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|||- ..++ +..+|.+..++||+|+.+++-. ++|.++.+
T Consensus 155 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~----~~i~~~~i 221 (284)
T PRK14177 155 IDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKP----EFIKADWI 221 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCc----CccCHHHc
Confidence 6889999999999 1111 2246999999999999998833 57777777
No 90
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.99 E-value=2.2 Score=38.98 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=38.9
Q ss_pred cCcCCCEEEEEccc-------------CCCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGTE-------------LGAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~~-------------~~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|+|.+ .+.. ..+|.+.+++||+|+.+.+.. ++++++.+ .|++|
T Consensus 148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~----~lv~~~~vk~GavV 220 (279)
T PRK14178 148 ISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKA----GFITPDMVKPGATV 220 (279)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcc----cccCHHHcCCCcEE
Confidence 67899999999991 2222 236999999999999999632 78888888 45544
No 91
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.97 E-value=3.1 Score=38.13 Aligned_cols=52 Identities=27% Similarity=0.473 Sum_probs=39.1
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..+|.+..++||+|+.+++-- ++|+.+.+ .|.+|
T Consensus 152 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p----~~i~~~~vk~GavV 224 (282)
T PRK14169 152 IDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVP----HFIGADAVKPGAVV 224 (282)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCc----CccCHHHcCCCcEE
Confidence 6789999999998 1122 2236999999999999999843 67888888 44443
No 92
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.64 E-value=3.2 Score=37.99 Aligned_cols=52 Identities=27% Similarity=0.441 Sum_probs=38.8
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|+|- ..++ +..+|.+..++||+|+.++.-- ++|+++.+ .|.+|
T Consensus 153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp----~~i~~~~vk~GavV 225 (282)
T PRK14166 153 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCV----NLLRSDMVKEGVIV 225 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCc----CccCHHHcCCCCEE
Confidence 6789999999998 1111 2246999999999999999833 67888877 44443
No 93
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.30 E-value=2.6 Score=38.67 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=35.2
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
..+.||++.|+|. ..++ +..+|.+.+++||+|+.+.+. .++|+++.+
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~----p~~i~~~~v 220 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGK----PGLVTKDVV 220 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCC----CcccCHHHc
Confidence 5789999999999 1122 123689999999999999984 246666666
No 94
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.08 E-value=3.5 Score=37.91 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=39.0
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..+|++..++||+|+.+..-- ++++++.+ .|.+|
T Consensus 151 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp----~~i~~~~vk~GavV 223 (287)
T PRK14173 151 IPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRP----HLITPEMVRPGAVV 223 (287)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCc----CccCHHHcCCCCEE
Confidence 6889999999998 1122 1236999999999999999732 68888888 44443
No 95
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.01 E-value=3.4 Score=37.74 Aligned_cols=52 Identities=21% Similarity=0.482 Sum_probs=39.0
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..+|.+..++||+|+.+++-- ++|+++.+ .|.+|
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp----~~i~~~~ik~gavV 226 (278)
T PRK14172 154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGRP----KFIDEEYVKEGAIV 226 (278)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCc----CccCHHHcCCCcEE
Confidence 6789999999998 1111 2236999999999999999843 57888888 44443
No 96
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.85 E-value=3.6 Score=37.70 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=39.3
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..+|++..++||+|+.+.+- .++|+++.+ .|.+|
T Consensus 153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk----~~~i~~~~ik~gaiV 225 (282)
T PRK14182 153 VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGK----AELVKGAWVKEGAVV 225 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCC----cCccCHHHcCCCCEE
Confidence 6789999999998 1111 223699999999999999983 468888888 45543
No 97
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.67 E-value=3.5 Score=37.97 Aligned_cols=52 Identities=15% Similarity=0.395 Sum_probs=38.8
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..+|.+..++||+|+.+++-. ++|.++.+ .|.+|
T Consensus 156 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp----~~i~~~~ik~gaiV 228 (294)
T PRK14187 156 RNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIP----NFVKYSWIKKGAIV 228 (294)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCc----CccCHHHcCCCCEE
Confidence 6889999999998 1111 2236999999999999999833 57888887 45443
No 98
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.64 E-value=2.8 Score=38.48 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=36.4
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGL 254 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~l 254 (294)
.++.||++.|+|. ..++ +..+|++..++||+|+.+++-- ++|..+.+ .|.+
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p----~~v~~~~vk~gav 226 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKP----GFIPGEWIKPGAI 226 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCc----ccccHHHcCCCcE
Confidence 6789999999999 1121 1236999999999999999522 46776666 3443
No 99
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=76.37 E-value=4.2 Score=37.27 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=36.3
Q ss_pred ccCHHHHhccCCEEEEecCCCcccccccccc----------cc-----cCcCCCHHHHHHHHHcCCce
Q psy5259 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGRK----------QF-----RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~~~----------~~-----RG~lvde~aL~~aL~~g~i~ 270 (294)
..+..+++++||+|++++|.....+..+... .+ .+.....+.+.+.+.+..+.
T Consensus 48 ~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 48 AASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred cCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 3478889999999999999877655554321 11 44444457777888777665
No 100
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.79 E-value=3.6 Score=37.68 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=36.3
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|||- ..++ +..+|.+..++||+|+.+.+-- ++|+++.+
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp----~~i~~~~v 220 (282)
T PRK14180 154 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKP----NFITADMV 220 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCc----CcCCHHHc
Confidence 6889999999998 1121 1246999999999999999833 56787777
No 101
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=75.53 E-value=3.1 Score=30.86 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=14.7
Q ss_pred CHHHHhccCCEEEEecCC
Q psy5259 220 PLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~ 237 (294)
+..+++.+||+|++++|.
T Consensus 54 ~~~~~~~~advvilav~p 71 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVKP 71 (96)
T ss_dssp EHHHHHHHTSEEEE-S-G
T ss_pred ChHHhhccCCEEEEEECH
Confidence 689999999999999994
No 102
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=75.52 E-value=3.8 Score=38.78 Aligned_cols=52 Identities=12% Similarity=0.299 Sum_probs=39.1
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..+|++..++||+|+.+..-- ++|.++.+ .|.+|
T Consensus 227 i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp----~~i~~d~vK~GAvV 299 (364)
T PLN02616 227 VEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQP----NMVRGSWIKPGAVV 299 (364)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCc----CcCCHHHcCCCCEE
Confidence 6889999999998 1121 2247999999999999999733 67888888 45444
No 103
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=75.27 E-value=3.1 Score=38.84 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=22.9
Q ss_pred ccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
..+.++++++||+|+.+.|. ++.++..+.+
T Consensus 183 ~~~~~eav~~aDiVitaT~s---~~P~~~~~~l 212 (325)
T TIGR02371 183 ATDPREAVEGCDILVTTTPS---RKPVVKADWV 212 (325)
T ss_pred eCCHHHHhccCCEEEEecCC---CCcEecHHHc
Confidence 35799999999999999874 4466655555
No 104
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=75.04 E-value=3.8 Score=38.54 Aligned_cols=52 Identities=12% Similarity=0.323 Sum_probs=39.3
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..++++..++||+|+.+..-- ++|+.+.+ .|.+|
T Consensus 210 i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp----~~v~~d~vk~GavV 282 (345)
T PLN02897 210 VEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIP----NLVRGSWLKPGAVV 282 (345)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCc----CccCHHHcCCCCEE
Confidence 6899999999998 1122 2246999999999999999843 67888888 45544
No 105
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.79 E-value=3.5 Score=38.05 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=39.3
Q ss_pred cCcCCCEEEEEcc-------------c----CCCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcC
Q psy5259 200 IGLNGSTVGIVGT-------------E----LGAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGL 254 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~----~~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~l 254 (294)
.++.||++.|||- . .+.. ..++.+.+++||+|+.+++.. ++|.++.+ .|++
T Consensus 155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~----~li~~~~vk~Gav 230 (295)
T PRK14174 155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKA----RFITADMVKPGAV 230 (295)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCcc----CccCHHHcCCCCE
Confidence 6789999999998 1 1222 125899999999999999632 78888888 5655
Q ss_pred C
Q psy5259 255 L 255 (294)
Q Consensus 255 v 255 (294)
|
T Consensus 231 V 231 (295)
T PRK14174 231 V 231 (295)
T ss_pred E
Confidence 5
No 106
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.68 E-value=4.4 Score=37.23 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=38.4
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGL 254 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~l 254 (294)
.++.||++.|||- ..++ +..+|.+..++||+|+.++.-- ++|.++.+ .|.+
T Consensus 155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp----~~i~~~~vk~Gav 226 (288)
T PRK14171 155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGSP----LKLTAEYFNPESI 226 (288)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCC----CccCHHHcCCCCE
Confidence 6789999999998 1111 2246999999999999999832 68888888 3443
No 107
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.47 E-value=3.4 Score=37.87 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=38.4
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++ +..+|.+.+++||+|+.+++- .++|+++.+ .|.+|
T Consensus 154 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~----p~~i~~~~ik~gavV 226 (284)
T PRK14190 154 IDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVGK----PKLITADMVKEGAVV 226 (284)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecCC----CCcCCHHHcCCCCEE
Confidence 6789999999998 1122 123689999999999999963 358888888 44443
No 108
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=73.07 E-value=3.4 Score=33.17 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=13.3
Q ss_pred ccCHHHHhccCCEEEEecCCC
Q psy5259 218 LVPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t 238 (294)
..+++++++++|+|++++|-.
T Consensus 59 ~~~~~~~~~~aDlv~iavpDd 79 (127)
T PF10727_consen 59 ILDLEEILRDADLVFIAVPDD 79 (127)
T ss_dssp ---TTGGGCC-SEEEE-S-CC
T ss_pred ccccccccccCCEEEEEechH
Confidence 457889999999999999944
No 109
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.87 E-value=5.2 Score=36.61 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=35.9
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|||- ..++ +..+|.+..++||+|+.+..- .++|.++.+
T Consensus 153 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGk----p~~i~~~~v 219 (281)
T PRK14183 153 IDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGK----PNLITEDMV 219 (281)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCc----ccccCHHHc
Confidence 6889999999998 1111 123699999999999999973 357777777
No 110
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=70.85 E-value=4.7 Score=34.93 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHHhccCCEEEEecCCCcccccc-cccccc-cCcCC
Q psy5259 221 LDTLCAQSDFIFVTCALTKDTEQL-IGRKQF-RGGLL 255 (294)
Q Consensus 221 l~ell~~sDvV~l~~p~t~~T~~l-i~~~~~-RG~lv 255 (294)
+.+.+++||+|+.+++-. ++ |.++.+ -|.+|
T Consensus 120 l~~~~~~ADIVIsAvG~~----~~~i~~d~ik~GavV 152 (197)
T cd01079 120 TLDCLSQSDVVITGVPSP----NYKVPTELLKDGAIC 152 (197)
T ss_pred HHHHhhhCCEEEEccCCC----CCccCHHHcCCCcEE
Confidence 778999999999999943 45 777777 35543
No 111
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=70.43 E-value=3.7 Score=33.00 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=30.3
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccccCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~n 293 (294)
.++.+.+.++|+|+.+.|.... . +.++.+....+. ....+|.-. |.+-+..+-++||
T Consensus 67 ~~~~~~~~~~DivI~aT~~~~~---~----------i~~~~~~~~~~~---~~~v~Dla~--Pr~i~~~v~~~~~ 123 (135)
T PF01488_consen 67 EDLEEALQEADIVINATPSGMP---I----------ITEEMLKKASKK---LRLVIDLAV--PRDIDPEVAELPG 123 (135)
T ss_dssp GGHCHHHHTESEEEE-SSTTST---S----------STHHHHTTTCHH---CSEEEES-S--S-SB-TTCGGSTT
T ss_pred HHHHHHHhhCCeEEEecCCCCc---c----------cCHHHHHHHHhh---hhceecccc--CCCCChhhcccCC
Confidence 3566678999999999995533 3 444333333222 346888854 3333334444454
No 112
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.53 E-value=6.6 Score=36.02 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=39.5
Q ss_pred cCcCCCEEEEEcc-------------c--CCCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------E--LGAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~--~~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- . .+++ ..+|.+..++||+|+.+..-- ++|+.+.+ .|.+|
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp----~~i~~~~ik~GavV 228 (284)
T PRK14193 154 VELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVA----HLVTADMVKPGAAV 228 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCc----CccCHHHcCCCCEE
Confidence 6789999999998 2 2222 236999999999999999843 68888888 45544
No 113
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.00 E-value=4.9 Score=36.90 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=37.5
Q ss_pred cCcCCCEEEEEcc-------------cCCCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|||- ..++. ..+|.+.+++||+|+.+++ ..+++..+.+ .|.+|
T Consensus 153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG----~p~~i~~~~vk~GavV 225 (285)
T PRK14191 153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVG----KPDLIKASMVKKGAVV 225 (285)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecC----CCCcCCHHHcCCCcEE
Confidence 6789999999998 12221 2358899999999999996 3357777777 44443
No 114
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.95 E-value=6.6 Score=36.07 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=37.4
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL 255 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv 255 (294)
.++.||++.|+|. ..++ +..+|.+..++||+|+.++.-- ++|+++.+ .|.+|
T Consensus 160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p----~~i~~~~vk~gavV 232 (287)
T PRK14176 160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVK----HLIKADMVKEGAVI 232 (287)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCc----cccCHHHcCCCcEE
Confidence 6789999999999 1122 2236999999999999977632 57777777 44443
No 115
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.63 E-value=6.7 Score=36.05 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=39.1
Q ss_pred cCcCCCEEEEEcc-------------cC----CCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcC
Q psy5259 200 IGLNGSTVGIVGT-------------EL----GAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGL 254 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~----~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~l 254 (294)
.++.||++.|||- .. +++ ..+|.+.+++||+|+.+++-- ++|.++.+ .|.+
T Consensus 149 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p----~~i~~~~ik~Gav 224 (287)
T PRK14181 149 IPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVP----LFIKEEMIAEKAV 224 (287)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCc----CccCHHHcCCCCE
Confidence 6789999999998 22 222 236999999999999999733 67888888 4544
Q ss_pred C
Q psy5259 255 L 255 (294)
Q Consensus 255 v 255 (294)
|
T Consensus 225 V 225 (287)
T PRK14181 225 I 225 (287)
T ss_pred E
Confidence 4
No 116
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=68.15 E-value=15 Score=34.93 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=19.3
Q ss_pred CHHHHhccCCEEEEecCCCccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
+.++++++||+|++++|... +..++
T Consensus 135 ~~~~~~~~aDlVilavP~~~-~~~~~ 159 (374)
T PRK11199 135 RAEDILADAGMVIVSVPIHL-TEEVI 159 (374)
T ss_pred hHHHHHhcCCEEEEeCcHHH-HHHHH
Confidence 57888999999999999664 34433
No 117
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=67.29 E-value=6.4 Score=36.93 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=24.2
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+.++.++.||+|+-+.|.++ .+|.++.+
T Consensus 187 ~s~~~av~~aDiIvt~T~s~~---Pil~~~~l 215 (330)
T COG2423 187 DSAEEAVEGADIVVTATPSTE---PVLKAEWL 215 (330)
T ss_pred cCHHHHhhcCCEEEEecCCCC---CeecHhhc
Confidence 478999999999999999554 77777776
No 118
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.81 E-value=7.4 Score=35.75 Aligned_cols=52 Identities=21% Similarity=0.436 Sum_probs=38.3
Q ss_pred cCcCCCEEEEEcc-------------c----CCCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcC
Q psy5259 200 IGLNGSTVGIVGT-------------E----LGAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGL 254 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~----~~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~l 254 (294)
.++.||++.|||- . .+++ ..+|.+.+++||+|+.+++ ..++|.++.+ .|++
T Consensus 153 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG----~p~li~~~~vk~Gav 228 (286)
T PRK14184 153 LSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIG----RPRFVTADMVKPGAV 228 (286)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEecC----CCCcCCHHHcCCCCE
Confidence 6789999999998 2 2222 1258999999999999995 3467887777 4444
Q ss_pred C
Q psy5259 255 L 255 (294)
Q Consensus 255 v 255 (294)
|
T Consensus 229 V 229 (286)
T PRK14184 229 V 229 (286)
T ss_pred E
Confidence 3
No 119
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.41 E-value=7 Score=35.81 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=34.4
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|+|. ..++ +..+|.+.+++||+|+.+.+ .+ ++|..+.|
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG-~~---~~v~~~~l 221 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVG-KP---ELIKKDWI 221 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccC-CC---CcCCHHHc
Confidence 6789999999999 1222 22368899999999999996 22 26666666
No 120
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.93 E-value=8.2 Score=35.47 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=20.9
Q ss_pred cCHHHHhccCCEEEEecCCCccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
.++++++++||+|++++|. +..+.++
T Consensus 39 ~~~~~~~~~advvi~~vp~-~~~~~v~ 64 (308)
T PRK14619 39 LSLAAVLADADVIVSAVSM-KGVRPVA 64 (308)
T ss_pred CCHHHHHhcCCEEEEECCh-HHHHHHH
Confidence 4689999999999999996 4555554
No 121
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=65.39 E-value=19 Score=33.06 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=39.8
Q ss_pred CCCEEEEEccc---C---CCccc-CHHHHhccCCEEEEecCCCcccccccccccccCcCCCHHHHHHHHHcCC
Q psy5259 203 NGSTVGIVGTE---L---GAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKK 268 (294)
Q Consensus 203 ~gktvgIiG~~---~---~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~RG~lvde~aL~~aL~~g~ 268 (294)
.|-+|-+.||+ + +++.. +.++++++||+|++-.|.+.+... |+....++.+--++++++.|+.|.
T Consensus 24 ~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~-i~~~~~~~~~~~~~~~l~~l~~~~ 95 (296)
T PRK08306 24 LGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGN-VDTVFSNEKLVLTEELLELTPEHC 95 (296)
T ss_pred CCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCce-eeccccccCCcchHHHHHhcCCCC
Confidence 45667777772 1 33443 578899999999999997655432 333333444444445555555554
No 122
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=64.05 E-value=11 Score=34.45 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=38.4
Q ss_pred cCHHHHhcc---CCEEEEecCCCccccccccc-------ccc-----cCcCCCHHHHHHHHHcCCceEEEee
Q psy5259 219 VPLDTLCAQ---SDFIFVTCALTKDTEQLIGR-------KQF-----RGGLLDQEALVEFLRDKKIGGAGLD 275 (294)
Q Consensus 219 ~~l~ell~~---sDvV~l~~p~t~~T~~li~~-------~~~-----RG~lvde~aL~~aL~~g~i~ga~LD 275 (294)
.+.+++.++ ||+|++++|..+.++.+++. ..+ +....+...+.+.+++..+. .+|
T Consensus 48 ~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 48 HSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred CCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 478888876 69999999977676665531 111 55556778888888877654 366
No 123
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=63.78 E-value=20 Score=34.62 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=27.6
Q ss_pred CHHHHhccCCEEEEecCCCcccccccccccccCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~~~RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
++.+.+.++|+|+.+.+ .+..+|+ .+.+..++..++.....+|.-
T Consensus 233 ~l~~~l~~aDvVi~aT~---s~~~ii~----------~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 233 DLEEYLAEADIVISSTG---APHPIVS----------KEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred HHHHHHhhCCEEEECCC---CCCceEc----------HHHHHHHHhcCCCCeEEEEeC
Confidence 46677889999999865 4445544 444444444433333677765
No 124
>PRK07340 ornithine cyclodeaminase; Validated
Probab=63.32 E-value=10 Score=35.04 Aligned_cols=26 Identities=4% Similarity=0.084 Sum_probs=20.6
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
.+.++++++||+|+.+.|.+ +.+|.+
T Consensus 180 ~~~~~av~~aDiVitaT~s~---~Pl~~~ 205 (304)
T PRK07340 180 LDGEAIPEAVDLVVTATTSR---TPVYPE 205 (304)
T ss_pred CCHHHHhhcCCEEEEccCCC---CceeCc
Confidence 47899999999999999844 455554
No 125
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.75 E-value=10 Score=35.05 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=38.0
Q ss_pred cCcCCCEEEEEcc-------------cC----CCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcC
Q psy5259 200 IGLNGSTVGIVGT-------------EL----GAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGL 254 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~----~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~l 254 (294)
.++.||++.|||- .. +++ ..++.+..++||+|+.++.-- ++|..+.+ .|.+
T Consensus 157 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp----~~i~~~~ik~gav 232 (297)
T PRK14168 157 VETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVP----NLVKPEWIKPGAT 232 (297)
T ss_pred CCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCc----CccCHHHcCCCCE
Confidence 6889999999998 22 222 236999999999999998632 57888877 4444
Q ss_pred C
Q psy5259 255 L 255 (294)
Q Consensus 255 v 255 (294)
|
T Consensus 233 V 233 (297)
T PRK14168 233 V 233 (297)
T ss_pred E
Confidence 3
No 126
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=62.71 E-value=19 Score=32.00 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=83.3
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCC--HHHHHHHccCCcEEEeCCCCC--CCHHHHhhcCC----C
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMP--RDIFIEKLKGCSALLCNPHQK--VDKEALDESGE----N 73 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~--~e~~~~~l~~~d~~~~~~~~~--~~~~~l~~~~~----~ 73 (294)
+|+||+|.|. +..++.-..|.+ +++++.++....... .+..++.+..+|.++..+..- .--+.+...++ +
T Consensus 1 ~~~vlvtR~~-~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~ 79 (248)
T COG1587 1 GMRVLVTRPR-EQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKN 79 (248)
T ss_pred CcEEEEeCch-hhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhhccccccc
Confidence 4789999973 322455566665 787777765431111 355666677788888764221 11222222221 1
Q ss_pred ceEEEeccccCcccChhhHhhCCcEEeecCC-CChhhhhhhhHHHHHHcc--CcceEEEeeccccccccchhhccCcEEE
Q psy5259 74 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGP-VSSDAVAEFNIGLAIAVK--NLKVISTFSVGHDHLHLDQIKSRGIRVG 150 (294)
Q Consensus 74 lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~-~~~~~vae~~~~~~l~~~--~Lk~i~~~~~G~d~id~~~~~~~GI~v~ 150 (294)
.++.+ +|- =-.+.+++.|+.+...|. ..++.+.+. +.... .=++....+.+...+-.+.+.++|+.|.
T Consensus 80 ~~i~a---VG~--~Ta~~l~~~G~~~~~~p~~~~~~~l~~~----l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~ 150 (248)
T COG1587 80 KKIAA---VGE--KTAEALRKLGIKVDFIPEDGDSEGLLEE----LPELLKGGKRVLILRGNGGREVLEEKLEERGAEVR 150 (248)
T ss_pred CeEEE---EcH--HHHHHHHHhCCCCCcCCCccchHHHHHH----hhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEE
Confidence 22222 221 113568899999888877 455444442 21112 2266667777777777788889999888
Q ss_pred eeCCCchH
Q psy5259 151 TVGPVSSD 158 (294)
Q Consensus 151 ~~~~~~~~ 158 (294)
...-|...
T Consensus 151 ~~~~Y~~~ 158 (248)
T COG1587 151 EVEVYRTE 158 (248)
T ss_pred EEeeeeec
Confidence 76654443
No 127
>PRK08818 prephenate dehydrogenase; Provisional
Probab=62.23 E-value=12 Score=35.73 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=17.4
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.++++.+++||+|++|+|..
T Consensus 43 ~~~~~~v~~aDlVilavPv~ 62 (370)
T PRK08818 43 LDPATLLQRADVLIFSAPIR 62 (370)
T ss_pred CCHHHHhcCCCEEEEeCCHH
Confidence 46788999999999999954
No 128
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.86 E-value=11 Score=34.75 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=36.0
Q ss_pred cCcCCCEEEEEcc-------------cC----CCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------EL----GAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~----~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|||- .. +++ ..+|.+..++||+|+.+++-. ++|.++.+
T Consensus 153 i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp----~~i~~~~v 223 (293)
T PRK14185 153 IETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQP----EFVKADMV 223 (293)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCc----CccCHHHc
Confidence 6789999999998 22 222 236999999999999999843 56777777
No 129
>PRK08618 ornithine cyclodeaminase; Validated
Probab=61.14 E-value=9.9 Score=35.36 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=23.4
Q ss_pred ccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
+.++++++++||+|+.+.|.. ..+|. +.+
T Consensus 183 ~~~~~~~~~~aDiVi~aT~s~---~p~i~-~~l 211 (325)
T PRK08618 183 VNSADEAIEEADIIVTVTNAK---TPVFS-EKL 211 (325)
T ss_pred eCCHHHHHhcCCEEEEccCCC---CcchH-Hhc
Confidence 357899999999999999844 56777 776
No 130
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=60.63 E-value=12 Score=30.65 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=12.3
Q ss_pred CHHHHhccCCEEEEecC
Q psy5259 220 PLDTLCAQSDFIFVTCA 236 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p 236 (294)
.-++++++||+|++.--
T Consensus 55 ~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 55 DAEEILPWADVVIITGS 71 (147)
T ss_dssp GHHHHGGG-SEEEEECH
T ss_pred HHHHHHccCCEEEEEee
Confidence 57788999999887643
No 131
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=60.16 E-value=91 Score=25.23 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCeEEEecCCCCCCchhH----HHhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCC
Q psy5259 3 KPKLLLTRNDYPRVSPAY----DILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNP 58 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~----~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~ 58 (294)
|++|++....-....... ..|++ +|+|+.... ..+.|++++... ++|++..++
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~---~v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGV---LSPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHHcCCCEEEEec
Confidence 456666443222112222 33344 799998766 578999998774 478877664
No 132
>PRK08291 ectoine utilization protein EutC; Validated
Probab=60.11 E-value=9.8 Score=35.47 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=20.9
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQ 249 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~ 249 (294)
.++++++++||+|+.+.|.. ..+|..+.
T Consensus 189 ~d~~~al~~aDiVi~aT~s~---~p~i~~~~ 216 (330)
T PRK08291 189 RDVHEAVAGADIIVTTTPSE---EPILKAEW 216 (330)
T ss_pred CCHHHHHccCCEEEEeeCCC---CcEecHHH
Confidence 57899999999999998854 34554443
No 133
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=59.80 E-value=94 Score=25.26 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=35.0
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
..+|++.+++...-.+.-..|.+ ++++..+... ++ .+.+.++++|++++. ....++.+++.
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~----t~-~l~~~v~~ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK----TI-QLQSKVHDADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC----Cc-CHHHHHhhCCEEEEecCCCCccCHHHcC
Confidence 35677766522222344455544 6788877643 21 344577889988865 23346667665
No 134
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=59.11 E-value=12 Score=30.15 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=18.4
Q ss_pred ccCHHHHhccCCEEEEecCCCcc
Q psy5259 218 LVPLDTLCAQSDFIFVTCALTKD 240 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t~~ 240 (294)
..+++++++++|+|++++|....
T Consensus 72 ~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 72 YLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred ecchhhccccCCEEEeCcCCCCC
Confidence 34677778999999999997653
No 135
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=58.79 E-value=14 Score=32.04 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=78.7
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC---CC-HHHHHHHccCCcEEEeCCCCCCCH--HHHh----hcC
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR---MP-RDIFIEKLKGCSALLCNPHQKVDK--EALD----ESG 71 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~---~~-~e~~~~~l~~~d~~~~~~~~~~~~--~~l~----~~~ 71 (294)
||+||+|.+ -+...+..+.|++ +++++.++..... .+ .+.....+.++|.++..+...+.. +.++ ...
T Consensus 1 ~~~ilitr~-~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~ 79 (249)
T PRK05928 1 MMKILVTRP-SPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWP 79 (249)
T ss_pred CCEEEEeCC-HHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCC
Confidence 488999996 3322345566666 6777765432100 11 123345667889888664322211 1111 111
Q ss_pred CCceEEEeccccCcccChhhHhhCCcEEeecC-CCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEE
Q psy5259 72 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVG 150 (294)
Q Consensus 72 ~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~-~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~ 150 (294)
.+.++++. | .--.+.+++.|+.+-..| ..+++.+++...... ...-+++...+.+....-.+.++++|..+.
T Consensus 80 ~~~~~~av---G--~~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~--~~~~~ili~~~~~~~~~l~~~L~~~G~~v~ 152 (249)
T PRK05928 80 KNKKYAAI---G--EKTALALKKLGGKVVFVPEDGESSELLLELPELL--LKGKRVLYLRGNGGREVLGDTLEERGAEVD 152 (249)
T ss_pred CCCEEEEE---C--HHHHHHHHHcCCCccccCCCCcChHHHHhChhhh--cCCCEEEEECCCCCHHHHHHHHHHCCCEEe
Confidence 23343332 2 122355678888765544 335555554333322 345566666666655555677888998888
Q ss_pred eeCCCch
Q psy5259 151 TVGPVSS 157 (294)
Q Consensus 151 ~~~~~~~ 157 (294)
..+-+..
T Consensus 153 ~~~~Y~~ 159 (249)
T PRK05928 153 ECEVYER 159 (249)
T ss_pred EEEEEEe
Confidence 7775543
No 136
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=57.65 E-value=2.7 Score=37.05 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=21.7
Q ss_pred CHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
+++++++++|+|+.+.. +++++.++++...
T Consensus 104 ~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~ 133 (228)
T cd00757 104 NAEELIAGYDLVLDCTD-NFATRYLINDACV 133 (228)
T ss_pred HHHHHHhCCCEEEEcCC-CHHHHHHHHHHHH
Confidence 35678889999888876 6677777765443
No 137
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.61 E-value=15 Score=34.03 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=37.8
Q ss_pred cCcCCCEEEEEcc-------------cC----CCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcC
Q psy5259 200 IGLNGSTVGIVGT-------------EL----GAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGL 254 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~----~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~l 254 (294)
..+.||++.|||- .. +++ ..+|.+..++||+|+.++.-- ++|.++.+ .|.+
T Consensus 153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp----~~i~~~~ik~gai 228 (297)
T PRK14167 153 VDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVP----ELIDGSMLSEGAT 228 (297)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCc----CccCHHHcCCCCE
Confidence 6789999999998 22 222 236899999999999988733 47888777 4444
Q ss_pred C
Q psy5259 255 L 255 (294)
Q Consensus 255 v 255 (294)
|
T Consensus 229 V 229 (297)
T PRK14167 229 V 229 (297)
T ss_pred E
Confidence 3
No 138
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=57.25 E-value=26 Score=30.71 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=82.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHHccC-C-cEEEeCCCCCCCHHHHhhc-CCCceEEEeccccCcccChhhHhhCCcEEeec
Q psy5259 26 MFDIITYPISEGRMPRDIFIEKLKG-C-SALLCNPHQKVDKEALDES-GENLKVISTFSVGHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 26 ~~~v~~~~~~~~~~~~e~~~~~l~~-~-d~~~~~~~~~~~~~~l~~~-~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~ 102 (294)
++..+.++.+. ....+.++.+++ + ++++..+ +-++.+-++++ .-.=++|.++ |+|.==++.|.++||++ .
T Consensus 38 Gi~~IEITl~s--p~a~e~I~~l~~~~p~~lIGAG-TVL~~~q~~~a~~aGa~fiVsP--~~~~ev~~~a~~~~ip~--~ 110 (211)
T COG0800 38 GIPAIEITLRT--PAALEAIRALAKEFPEALIGAG-TVLNPEQARQAIAAGAQFIVSP--GLNPEVAKAANRYGIPY--I 110 (211)
T ss_pred CCCeEEEecCC--CCHHHHHHHHHHhCcccEEccc-cccCHHHHHHHHHcCCCEEECC--CCCHHHHHHHHhCCCcc--c
Confidence 45444444442 334444444422 2 4555443 45555444433 2233445444 22332334566777765 6
Q ss_pred CCCChhhhhhhhHHHHHHccCcceEEEeeccc-cccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh-cCchhhhh
Q psy5259 103 GPVSSDAVAEFNIGLAIAVKNLKVISTFSVGH-DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS-RRFQQGHN 180 (294)
Q Consensus 103 ~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~-d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~-r~~~~~~~ 180 (294)
||+.+.+=+. .++-.-++-+|++-.-..|. ..+-.-.---.+++++-++|.+..-++||.-+-.++.. +....-..
T Consensus 111 PG~~TptEi~--~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~~ 188 (211)
T COG0800 111 PGVATPTEIM--AALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPKD 188 (211)
T ss_pred CCCCCHHHHH--HHHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccChh
Confidence 7777665433 23333457788877666633 33322222233589999999999999998876655443 33333334
Q ss_pred hHhcCCCCc
Q psy5259 181 CIASGEWAL 189 (294)
Q Consensus 181 ~~~~~~w~~ 189 (294)
...++.|++
T Consensus 189 ~~~~~~~~~ 197 (211)
T COG0800 189 LIAAGDWDR 197 (211)
T ss_pred hhhcccHHH
Confidence 456677754
No 139
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=55.31 E-value=1.1e+02 Score=24.60 Aligned_cols=30 Identities=20% Similarity=0.456 Sum_probs=23.3
Q ss_pred cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCC
Q psy5259 26 MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNP 58 (294)
Q Consensus 26 ~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~ 58 (294)
+|+|+.... ..+.|++.+... ++|++..++
T Consensus 27 GfeVidLG~---~v~~e~~v~aa~~~~adiVglS~ 58 (128)
T cd02072 27 GFNVVNLGV---LSPQEEFIDAAIETDADAILVSS 58 (128)
T ss_pred CCEEEECCC---CCCHHHHHHHHHHcCCCEEEEec
Confidence 799998766 578899998764 588887764
No 140
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=55.08 E-value=9.7 Score=36.22 Aligned_cols=31 Identities=6% Similarity=0.248 Sum_probs=21.6
Q ss_pred CHHHHhccCCEEEEecCCCc-ccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTK-DTEQLIGRKQF 250 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~-~T~~li~~~~~ 250 (294)
++.+.++++|+|+.+++.+. .+..+|+++.+
T Consensus 223 ~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l 254 (370)
T TIGR00518 223 EIEDAVKRADLLIGAVLIPGAKAPKLVSNSLV 254 (370)
T ss_pred HHHHHHccCCEEEEccccCCCCCCcCcCHHHH
Confidence 46778899999999987532 34556665554
No 141
>PRK06545 prephenate dehydrogenase; Validated
Probab=54.96 E-value=15 Score=34.74 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=20.8
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~ 246 (294)
.++++++++||+|++++|.. .+..++.
T Consensus 52 ~~~~~~~~~aDlVilavP~~-~~~~vl~ 78 (359)
T PRK06545 52 ADLQRAAAEADLIVLAVPVD-ATAALLA 78 (359)
T ss_pred cCHHHHhcCCCEEEEeCCHH-HHHHHHH
Confidence 46788899999999999964 4555543
No 142
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=54.34 E-value=15 Score=35.31 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=14.9
Q ss_pred cCHHHHhccCCEEEEecC
Q psy5259 219 VPLDTLCAQSDFIFVTCA 236 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p 236 (294)
.++++.++.||++++...
T Consensus 368 ~~~~~~~~~aDaivi~te 385 (414)
T COG1004 368 SDAEEALKGADAIVINTE 385 (414)
T ss_pred CCHHHHHhhCCEEEEecc
Confidence 368899999999998765
No 143
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=54.32 E-value=4 Score=35.25 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=18.7
Q ss_pred HHHHhccCCEEEEecCCCcccccccccc
Q psy5259 221 LDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 221 l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
++++++++|+|+.+.. +.+++.++|+-
T Consensus 105 ~~~~~~~~D~Vi~~~d-~~~~r~~l~~~ 131 (202)
T TIGR02356 105 LELLINNVDLVLDCTD-NFATRYLINDA 131 (202)
T ss_pred HHHHHhCCCEEEECCC-CHHHHHHHHHH
Confidence 5677888998877764 45666666543
No 144
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=54.23 E-value=13 Score=34.36 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=22.7
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+.++.+++||+|+.+.| ++..+|..+.+
T Consensus 174 ~~~~eav~~aDIV~taT~---s~~P~~~~~~l 202 (301)
T PRK06407 174 DNAEAALRDADTITSITN---SDTPIFNRKYL 202 (301)
T ss_pred CCHHHHHhcCCEEEEecC---CCCcEecHHHc
Confidence 479999999999999887 44566666655
No 145
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=54.22 E-value=6.1 Score=35.27 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=19.1
Q ss_pred HHHHhccCCEEEEecCCCccccccccccc
Q psy5259 221 LDTLCAQSDFIFVTCALTKDTEQLIGRKQ 249 (294)
Q Consensus 221 l~ell~~sDvV~l~~p~t~~T~~li~~~~ 249 (294)
++++++++|+|+.++- +.+++..+|+..
T Consensus 116 ~~~~~~~~DiVi~~~D-~~~~r~~ln~~~ 143 (245)
T PRK05690 116 LAALIAGHDLVLDCTD-NVATRNQLNRAC 143 (245)
T ss_pred HHHHHhcCCEEEecCC-CHHHHHHHHHHH
Confidence 5567888888887764 556666666443
No 146
>PRK06141 ornithine cyclodeaminase; Validated
Probab=53.71 E-value=15 Score=34.05 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=21.7
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+.++.+++||+|+.+.|.. +.+|..+.+
T Consensus 181 ~~~~~av~~aDIVi~aT~s~---~pvl~~~~l 209 (314)
T PRK06141 181 TDLEAAVRQADIISCATLST---EPLVRGEWL 209 (314)
T ss_pred CCHHHHHhcCCEEEEeeCCC---CCEecHHHc
Confidence 46888999999997777743 566666666
No 147
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=53.26 E-value=18 Score=33.10 Aligned_cols=20 Identities=5% Similarity=0.175 Sum_probs=16.8
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.++++.+++||+|++++|..
T Consensus 58 ~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 58 TSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred CCHHHHhcCCCEEEECCCHH
Confidence 35778899999999999953
No 148
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=53.12 E-value=15 Score=35.65 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=41.9
Q ss_pred CcCCCEEEEEcc----------------------------------cCCCccc---CHHHHhccCCEEEEecCCCccccc
Q psy5259 201 GLNGSTVGIVGT----------------------------------ELGAQLV---PLDTLCAQSDFIFVTCALTKDTEQ 243 (294)
Q Consensus 201 ~l~gktvgIiG~----------------------------------~~~~~~~---~l~ell~~sDvV~l~~p~t~~T~~ 243 (294)
+|.++++.|||. .++.+.. ++.+.+.++|+|+.+.. +...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 489999999999 3444444 45567999999999865 3333
Q ss_pred ccccccccCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 244 LIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 244 li~~~~~RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
+ |..+.+-.+++..+- =...|-.
T Consensus 252 i----------i~~~~ve~a~~~r~~-~livDia 274 (414)
T COG0373 252 I----------ITREMVERALKIRKR-LLIVDIA 274 (414)
T ss_pred c----------cCHHHHHHHHhcccC-eEEEEec
Confidence 3 566666666666544 2445533
No 149
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=52.92 E-value=18 Score=33.55 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=21.1
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+.++.+++||+|+.+.|.+..+ .+++.+.+
T Consensus 184 ~~~~~av~~aDii~taT~s~~~~-P~~~~~~l 214 (313)
T PF02423_consen 184 DSAEEAVRGADIIVTATPSTTPA-PVFDAEWL 214 (313)
T ss_dssp SSHHHHHTTSSEEEE----SSEE-ESB-GGGS
T ss_pred cchhhhcccCCEEEEccCCCCCC-ccccHHHc
Confidence 47999999999999998855433 78888777
No 150
>PRK06823 ornithine cyclodeaminase; Validated
Probab=52.49 E-value=14 Score=34.33 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=23.1
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+.++.+++||+|+.+.| ++..+|..+.+
T Consensus 184 ~~~~~av~~ADIV~taT~---s~~P~~~~~~l 212 (315)
T PRK06823 184 LDAAEVAHAANLIVTTTP---SREPLLQAEDI 212 (315)
T ss_pred CCHHHHhcCCCEEEEecC---CCCceeCHHHc
Confidence 468999999999998876 55577776666
No 151
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=52.43 E-value=16 Score=33.93 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=21.9
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++++.+++||+|+.+.|. +..+|..+.+
T Consensus 186 ~~~~~av~~aDiVvtaT~s---~~p~i~~~~l 214 (326)
T TIGR02992 186 TDPRAAMSGADIIVTTTPS---ETPILHAEWL 214 (326)
T ss_pred CCHHHHhccCCEEEEecCC---CCcEecHHHc
Confidence 4688999999999999885 3356655554
No 152
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=51.22 E-value=27 Score=31.95 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=35.9
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+++||++.|||- ..++ +..++.+..++||+|+.++-.- +||.++.+
T Consensus 152 i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p----~~i~~d~v 218 (283)
T COG0190 152 IDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKP----HFIKADMV 218 (283)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCc----cccccccc
Confidence 6899999999999 1111 2247999999999999998633 77777776
No 153
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=50.83 E-value=16 Score=33.04 Aligned_cols=25 Identities=4% Similarity=0.100 Sum_probs=18.8
Q ss_pred cCHHHHhccCCEEEEecCCCcccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQL 244 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~l 244 (294)
.+..+++.+||+|++++|- ...+.+
T Consensus 55 ~~~~e~~~~aDiIiLavkP-~~~~~v 79 (272)
T PRK12491 55 TNNNEVANSADILILSIKP-DLYSSV 79 (272)
T ss_pred CCcHHHHhhCCEEEEEeCh-HHHHHH
Confidence 3677889999999999993 444443
No 154
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=50.53 E-value=28 Score=31.86 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=33.4
Q ss_pred CHHHHhcc---CCEEEEecCCCccccccccc-------ccc-----cCcCCCHHHHHHHHHcCCce
Q psy5259 220 PLDTLCAQ---SDFIFVTCALTKDTEQLIGR-------KQF-----RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 220 ~l~ell~~---sDvV~l~~p~t~~T~~li~~-------~~~-----RG~lvde~aL~~aL~~g~i~ 270 (294)
+.+++.+. +|+|++++|-.+.++..++. ..+ .+..-....+.+.+++..+.
T Consensus 49 ~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 49 SLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred CHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence 68888876 69999999977665555421 111 33434556677777777665
No 155
>PRK06046 alanine dehydrogenase; Validated
Probab=49.29 E-value=18 Score=33.73 Aligned_cols=28 Identities=11% Similarity=0.302 Sum_probs=20.1
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+++++++ +|+|+.+.|.+ ..+|..+.+
T Consensus 186 ~~~~~~l~-aDiVv~aTps~---~P~~~~~~l 213 (326)
T PRK06046 186 EDIEEACD-CDILVTTTPSR---KPVVKAEWI 213 (326)
T ss_pred CCHHHHhh-CCEEEEecCCC---CcEecHHHc
Confidence 47889997 99999999943 345544443
No 156
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=48.68 E-value=1.6e+02 Score=24.65 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=36.7
Q ss_pred CCeEEEecCCCCCC-chhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 3 KPKLLLTRNDYPRV-SPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 3 k~kvl~~~~~~~~~-~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
..+|++.+. -... ....+.|.+ ++++..+.. +.+++.+.++++|++++.. ..-++++.++
T Consensus 44 gk~vlViG~-G~~~G~~~a~~L~~~g~~V~v~~r-----~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~ 107 (168)
T cd01080 44 GKKVVVVGR-SNIVGKPLAALLLNRNATVTVCHS-----KTKNLKEHTKQADIVIVAVGKPGLVKGDMVK 107 (168)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCCEEEEEEC-----CchhHHHHHhhCCEEEEcCCCCceecHHHcc
Confidence 467888884 1111 235566655 557665543 3467778899999999762 2246666664
No 157
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=48.16 E-value=24 Score=34.11 Aligned_cols=15 Identities=7% Similarity=0.109 Sum_probs=12.6
Q ss_pred cCcCCCEEEEEcccC
Q psy5259 200 IGLNGSTVGIVGTEL 214 (294)
Q Consensus 200 ~~l~gktvgIiG~~~ 214 (294)
.++.|++|+|+|+.|
T Consensus 316 ~~~~~~~v~vlGlaf 330 (415)
T PRK11064 316 KRASEVKIACFGLAF 330 (415)
T ss_pred cCcCCCEEEEEeeEE
Confidence 568999999999933
No 158
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.06 E-value=23 Score=31.04 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=19.0
Q ss_pred cccCHHHHhccCCEEEEecCCCc
Q psy5259 217 QLVPLDTLCAQSDFIFVTCALTK 239 (294)
Q Consensus 217 ~~~~l~ell~~sDvV~l~~p~t~ 239 (294)
+-.+.++..+.+|||++++|+..
T Consensus 50 ~~~~~~dA~~~aDVVvLAVP~~a 72 (211)
T COG2085 50 TGGSNEDAAALADVVVLAVPFEA 72 (211)
T ss_pred ccCChHHHHhcCCEEEEeccHHH
Confidence 34578889999999999999764
No 159
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=48.01 E-value=20 Score=27.40 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.0
Q ss_pred cccCHHHHhc--cCCEEEEecCC
Q psy5259 217 QLVPLDTLCA--QSDFIFVTCAL 237 (294)
Q Consensus 217 ~~~~l~ell~--~sDvV~l~~p~ 237 (294)
.+.+++++++ +.|+|+++.|-
T Consensus 50 ~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 50 VYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EESSHHHHHHHTTESEEEEESSG
T ss_pred chhHHHHHHHhhcCCEEEEecCC
Confidence 4568999999 78999999994
No 160
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=47.97 E-value=14 Score=33.87 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=22.9
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~ 246 (294)
.+..|+.+.||+|+.++|..++-+..+-
T Consensus 49 ~s~~eaa~~aDvVitmv~~~~~V~~V~~ 76 (286)
T COG2084 49 ASPAEAAAEADVVITMLPDDAAVRAVLF 76 (286)
T ss_pred CCHHHHHHhCCEEEEecCCHHHHHHHHh
Confidence 3577899999999999998887666553
No 161
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=47.75 E-value=37 Score=27.37 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=46.1
Q ss_pred CCcccC-HHHHhccCCEEEEecCCCcccccccccccc---cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259 215 GAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF---RGGLLDQEALVEFLRDKKIGGAGLDVMIP 279 (294)
Q Consensus 215 ~~~~~~-l~ell~~sDvV~l~~p~t~~T~~li~~~~~---RG~lvde~aL~~aL~~g~i~ga~LDV~~~ 279 (294)
|++.++ -++++++||+|+-.=|.+++....+..... --.......+++.|.++++...++|....
T Consensus 51 GA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~li~~~~~~~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 51 GAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTLIGFLHPAQNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp TEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEEEEE--GGGHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred CcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEEEEeeccccCHHHHHHHHHCCCEEEEhhhCcC
Confidence 344444 559999999999999988877777766665 33334689999999999999999987655
No 162
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=46.91 E-value=54 Score=29.28 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=58.9
Q ss_pred HccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcce
Q psy5259 47 KLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKV 126 (294)
Q Consensus 47 ~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~ 126 (294)
.++.||+++-.+. -+++|+|+.+.|+-+++.+.+- +.+.+-+ .+.-+.+.=|-
T Consensus 25 ll~~advviYAGS-LV~~elL~~~~~~aei~nSa~~-----------------------tLeeIi~---~m~~a~~~Gk~ 77 (254)
T COG2875 25 LLEKADVVIYAGS-LVPPELLEYCRPDAEIVNSASL-----------------------TLEEIID---LMVDAVREGKD 77 (254)
T ss_pred HHhhCCEEEECCC-cCCHHHHhhcCCCCEEEecCcC-----------------------CHHHHHH---HHHHHHHcCCe
Confidence 4567888776643 7888888888777666655422 2222211 12223355577
Q ss_pred EEEeecccccc------ccchhhccCcEEEeeCCCchHHHHHHHHHH
Q psy5259 127 ISTFSVGHDHL------HLDQIKSRGIRVGTVGPVSSDAVAEFNIGL 167 (294)
Q Consensus 127 i~~~~~G~d~i------d~~~~~~~GI~v~~~~~~~~~~VAE~al~l 167 (294)
+.+.-+|--.+ -.++++++||....+||..+-.-|--+++.
T Consensus 78 VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ 124 (254)
T COG2875 78 VVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGI 124 (254)
T ss_pred EEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCc
Confidence 77777765543 346788999999999997765555444443
No 163
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=46.76 E-value=1e+02 Score=22.68 Aligned_cols=72 Identities=8% Similarity=0.253 Sum_probs=45.1
Q ss_pred CeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
+||-+-. ++. ...+.|++ +|+|+...... .++++|++++.+.. ..++.
T Consensus 2 kkIAVE~-~Ls---~v~~~L~~~GyeVv~l~~~~----------~~~~~daiVvtG~~---~n~mg-------------- 50 (80)
T PF03698_consen 2 KKIAVEE-GLS---NVKEALREKGYEVVDLENEQ----------DLQNVDAIVVTGQD---TNMMG-------------- 50 (80)
T ss_pred CeEEecC-Cch---HHHHHHHHCCCEEEecCCcc----------ccCCcCEEEEECCC---ccccc--------------
Confidence 4555555 354 45567766 89999775421 57899999987531 11111
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhh
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF 113 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~ 113 (294)
.+. ..-+.+|-|+.|-+++.|.+-
T Consensus 51 ------~~d-~~~~~pVInA~G~T~eEI~~~ 74 (80)
T PF03698_consen 51 ------IQD-TSTKVPVINASGLTAEEIVQE 74 (80)
T ss_pred ------ccc-cccCceEEecCCCCHHHHHHH
Confidence 111 123558889999999999864
No 164
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=46.49 E-value=26 Score=30.64 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=17.1
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.+++++++++|+|++++|-.
T Consensus 58 ~~~~~~~~~~DiViiavp~~ 77 (245)
T PRK07634 58 TDWKQHVTSVDTIVLAMPPS 77 (245)
T ss_pred CChHHHHhcCCEEEEecCHH
Confidence 46888999999999999943
No 165
>KOG0409|consensus
Probab=46.27 E-value=19 Score=33.40 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=33.7
Q ss_pred cCcCCCEEEEEcc--------------------------------cCCCcc-cCHHHHhccCCEEEEecCCCcccccc
Q psy5259 200 IGLNGSTVGIVGT--------------------------------ELGAQL-VPLDTLCAQSDFIFVTCALTKDTEQL 244 (294)
Q Consensus 200 ~~l~gktvgIiG~--------------------------------~~~~~~-~~l~ell~~sDvV~l~~p~t~~T~~l 244 (294)
.....+++|+||+ +.|.+. .+-.|+.+.||+|+..+|....-+.+
T Consensus 31 ~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v 108 (327)
T KOG0409|consen 31 ITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDV 108 (327)
T ss_pred CCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHH
Confidence 4557899999999 223332 36889999999999999976654444
No 166
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=45.62 E-value=1.5e+02 Score=29.19 Aligned_cols=92 Identities=16% Similarity=0.015 Sum_probs=52.8
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS 81 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~ 81 (294)
.+||++.+-... --...+.|.+ +++|..++.+..+...++......++++...... . +.+..+ =-+|.++|
T Consensus 7 ~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~--~--~~~~~~---d~vV~SPG 78 (448)
T COG0771 7 GKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHD--D--EDLAEF---DLVVKSPG 78 (448)
T ss_pred CCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccc--h--hccccC---CEEEECCC
Confidence 577888773121 1245566666 7899888875412112222222345554443321 1 222211 14667899
Q ss_pred ccCcccChhhHhhCCcEEeec
Q psy5259 82 VGHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 82 ~G~d~id~~~~~~~gI~v~~~ 102 (294)
+.++|-.++.+++.||++...
T Consensus 79 i~~~~p~v~~A~~~gi~i~~d 99 (448)
T COG0771 79 IPPTHPLVEAAKAAGIEIIGD 99 (448)
T ss_pred CCCCCHHHHHHHHcCCcEEeH
Confidence 999999999999999987554
No 167
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=44.49 E-value=51 Score=30.08 Aligned_cols=92 Identities=22% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHcc
Q psy5259 43 IFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122 (294)
Q Consensus 43 ~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~ 122 (294)
...+.++.+|++++- +++.++.+|++++-+-++++.. ||-.. +..-.++-.+.
T Consensus 23 Ral~~L~~~D~iaaE-DTR~t~~LL~~~~I~~~~is~h----~hne~----------------------~~~~~li~~l~ 75 (275)
T COG0313 23 RALEVLKEVDVIAAE-DTRVTRKLLSHLGIKTPLISYH----EHNEK----------------------EKLPKLIPLLK 75 (275)
T ss_pred HHHHHHhhCCEEEEe-ccHHHHHHHHHhCCCCceeccc----CCcHH----------------------HHHHHHHHHHh
Confidence 345567888888875 6788889998885555544331 11111 11111111121
Q ss_pred -CcceEEEeecccccc-c-----cchhhccCcEEEeeCCCchHHHH
Q psy5259 123 -NLKVISTFSVGHDHL-H-----LDQIKSRGIRVGTVGPVSSDAVA 161 (294)
Q Consensus 123 -~Lk~i~~~~~G~d~i-d-----~~~~~~~GI~v~~~~~~~~~~VA 161 (294)
.-.+-...-+|.--| | +..|.+.||+|.-.||.++-..|
T Consensus 76 ~g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tA 121 (275)
T COG0313 76 KGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITA 121 (275)
T ss_pred cCCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHH
Confidence 112222223344333 2 46789999999999998875544
No 168
>PLN02858 fructose-bisphosphate aldolase
Probab=44.21 E-value=18 Score=40.49 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=23.5
Q ss_pred cCHHHHhccCCEEEEecCCCccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
.+..++.++||+|++++|..++++.++
T Consensus 372 ~s~~e~~~~aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 372 NSPAEVAKDVDVLVIMVANEVQAENVL 398 (1378)
T ss_pred CCHHHHHhcCCEEEEecCChHHHHHHH
Confidence 478899999999999999888877776
No 169
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=43.98 E-value=28 Score=33.38 Aligned_cols=12 Identities=50% Similarity=0.625 Sum_probs=10.8
Q ss_pred CcCCCEEEEEcc
Q psy5259 201 GLNGSTVGIVGT 212 (294)
Q Consensus 201 ~l~gktvgIiG~ 212 (294)
.+.|++|+|+|+
T Consensus 310 ~~~~~~v~vlGl 321 (411)
T TIGR03026 310 PLKGKTVLILGL 321 (411)
T ss_pred cccCCEEEEEee
Confidence 478999999999
No 170
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=43.35 E-value=28 Score=33.60 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHhccCCEEEEecCCCcccccccccccc---------------cCcCCC---------HHHHHHHHHcC-CceEEEee--
Q psy5259 223 TLCAQSDFIFVTCALTKDTEQLIGRKQF---------------RGGLLD---------QEALVEFLRDK-KIGGAGLD-- 275 (294)
Q Consensus 223 ell~~sDvV~l~~p~t~~T~~li~~~~~---------------RG~lvd---------e~aL~~aL~~g-~i~ga~LD-- 275 (294)
+-++.||++++|.| ||-+++ ..-.| +|.+|- .+.+..-|-+. .-....-|
T Consensus 80 ~~l~~~dv~iI~VP-TPl~~~--~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~ 156 (436)
T COG0677 80 EELKECDVFIICVP-TPLKKY--REPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY 156 (436)
T ss_pred hhcccCCEEEEEec-CCcCCC--CCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee
Confidence 34568999999999 666553 22223 666653 34444444332 22223345
Q ss_pred -CCCCCCCCCCCCCcCC
Q psy5259 276 -VMIPEPMPADHPLVQL 291 (294)
Q Consensus 276 -V~~~EP~~~~~~l~~~ 291 (294)
.|.+|-..+.+.++++
T Consensus 157 laysPERv~PG~~~~el 173 (436)
T COG0677 157 LAYSPERVLPGNVLKEL 173 (436)
T ss_pred EeeCccccCCCchhhhh
Confidence 4567766566666554
No 171
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=43.34 E-value=14 Score=31.98 Aligned_cols=29 Identities=7% Similarity=0.174 Sum_probs=21.9
Q ss_pred CHHHHhccCCEEEEecCCCccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQ 249 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~~ 249 (294)
.++++++++|+|+-+ .-+++++.+++.+.
T Consensus 103 ~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~ 131 (200)
T TIGR02354 103 NIDKFFKDADIVCEA-FDNAEAKAMLVNAV 131 (200)
T ss_pred HHHHHhcCCCEEEEC-CCCHHHHHHHHHHH
Confidence 466788899999988 56778888766543
No 172
>PLN02256 arogenate dehydrogenase
Probab=43.30 E-value=31 Score=31.89 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=20.3
Q ss_pred CHHHHh-ccCCEEEEecCCCcccccccccc
Q psy5259 220 PLDTLC-AQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 220 ~l~ell-~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
++++++ ..+|+|++++|. ..+..++.+-
T Consensus 84 ~~~e~~~~~aDvVilavp~-~~~~~vl~~l 112 (304)
T PLN02256 84 DPDDFCEEHPDVVLLCTSI-LSTEAVLRSL 112 (304)
T ss_pred CHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence 566776 469999999995 3666766553
No 173
>PRK07589 ornithine cyclodeaminase; Validated
Probab=43.02 E-value=30 Score=32.64 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=22.1
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+.++.+++||+|+.+.|.+ ++.-+|..+.+
T Consensus 185 ~~~~~av~~ADIIvtaT~S~-~~~Pvl~~~~l 215 (346)
T PRK07589 185 RSVAEAVEGADIITTVTADK-TNATILTDDMV 215 (346)
T ss_pred CCHHHHHhcCCEEEEecCCC-CCCceecHHHc
Confidence 57999999999999998733 22244555554
No 174
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.47 E-value=1.8e+02 Score=26.70 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=37.3
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+. -..+ .+....|. ++.+|..+..+ | ..+.+.++++|++++.. ...++++.+.
T Consensus 159 k~vvVIGr-s~~VG~pla~lL~~~gatVtv~~s~----t-~~l~~~~~~ADIVIsAvg~p~~i~~~~vk 221 (286)
T PRK14175 159 KNAVVIGR-SHIVGQPVSKLLLQKNASVTILHSR----S-KDMASYLKDADVIVSAVGKPGLVTKDVVK 221 (286)
T ss_pred CEEEEECC-CchhHHHHHHHHHHCCCeEEEEeCC----c-hhHHHHHhhCCEEEECCCCCcccCHHHcC
Confidence 56788774 1111 34445554 46888887653 2 35667889999999763 2247777764
No 175
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.23 E-value=2.7e+02 Score=25.63 Aligned_cols=59 Identities=5% Similarity=0.022 Sum_probs=36.9
Q ss_pred CeEEEecCCCCCC-chhHHHh-hccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDIL-EDMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l-~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.+|++.+.. ..+ .+....| .++.+|..+... | +++.+.++.+|++++. ....++++++.
T Consensus 158 k~vvVvGrs-~~VG~Pla~lL~~~gAtVtv~hs~----t-~~l~~~~~~ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 158 KDVVIIGAS-NIVGKPLAMLMLNAGASVSVCHIL----T-KDLSFYTQNADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred CEEEEECCC-chhHHHHHHHHHHCCCEEEEEeCC----c-HHHHHHHHhCCEEEEecCCCCcCCHHHcC
Confidence 467777752 111 3444444 457888887652 3 3466788999999975 23456777775
No 176
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=41.90 E-value=26 Score=16.99 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=9.7
Q ss_pred HHHHHHHHHcCC
Q psy5259 257 QEALVEFLRDKK 268 (294)
Q Consensus 257 e~aL~~aL~~g~ 268 (294)
.+.|++||++|.
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 367899999885
No 177
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.86 E-value=2.6e+02 Score=25.57 Aligned_cols=60 Identities=7% Similarity=0.075 Sum_probs=35.7
Q ss_pred CeEEEecCCCCCCchhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRVSPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.+|++.+.......+....|. .+..|..+... ...+.+.++++|+++..- ..-++++++.
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~-----t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSK-----TENLKAELRQADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecC-----hhHHHHHHhhCCEEEECCCcccccCHHHcC
Confidence 456777652222233333443 36777776542 245777889999999762 3456777774
No 178
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=41.77 E-value=24 Score=32.29 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=21.7
Q ss_pred cCHHHHhccCCEEEEecCCCccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
.+..++.++||+|++++|-.+..+..+
T Consensus 47 ~s~~~~~~~advVi~~v~~~~~v~~v~ 73 (292)
T PRK15059 47 ETARQVTEASDIIFIMVPDTPQVEEVL 73 (292)
T ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHH
Confidence 468888999999999999776655544
No 179
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=41.20 E-value=14 Score=34.78 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=18.9
Q ss_pred CHHHHhccCCEEEEecCCCcccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
+++++++++|+|+.+. -+.+++-+||.-
T Consensus 109 ~~~~~~~~~DlVid~~-D~~~~r~~in~~ 136 (338)
T PRK12475 109 ELEELVKEVDLIIDAT-DNFDTRLLINDL 136 (338)
T ss_pred HHHHHhcCCCEEEEcC-CCHHHHHHHHHH
Confidence 3567788888877776 356666666543
No 180
>COG1804 CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
Probab=41.14 E-value=1.3e+02 Score=29.09 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=35.1
Q ss_pred CCHHHHHHHccCCcEEEeCC------CCCCCHHHHhhcCCCceEEEeccccCc
Q psy5259 39 MPRDIFIEKLKGCSALLCNP------HQKVDKEALDESGENLKVISTFSVGHD 85 (294)
Q Consensus 39 ~~~e~~~~~l~~~d~~~~~~------~~~~~~~~l~~~~~~lk~i~~~~~G~d 85 (294)
-.+|.+.+.++.+|+++-+. .-.++.|.|.+.+|+|-+++..+-|-+
T Consensus 79 egre~~~~Lv~~ADVlienfrpG~l~rlGl~ye~L~~~NP~LIy~sisGfGq~ 131 (396)
T COG1804 79 EGREILLRLVAGADVLIENFRPGVLERLGLGYEALRAINPRLIYCSISGFGQT 131 (396)
T ss_pred hHHHHHHHHHhhCceehcccchhHHHHhCCCHHHHHhhCCCeEEEEEeeCCCC
Confidence 34577788889999999652 236788888888888888887776654
No 181
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=40.98 E-value=10 Score=36.06 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=21.1
Q ss_pred CHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++++++++|+|+.++- +.+++.+||+...
T Consensus 124 ~~~~~~~~~DlVid~~D-n~~~r~~in~~~~ 153 (370)
T PRK05600 124 NAVELLNGVDLVLDGSD-SFATKFLVADAAE 153 (370)
T ss_pred HHHHHHhCCCEEEECCC-CHHHHHHHHHHHH
Confidence 46678899998866554 6678877776443
No 182
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.52 E-value=2.3e+02 Score=26.03 Aligned_cols=60 Identities=7% Similarity=0.041 Sum_probs=37.0
Q ss_pred CeEEEecCCCCCCchhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRVSPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.+...-.-.+....|. ++..|..+... | ..+.+.++++|++++. ....++++++.
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~----T-~~l~~~~~~ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF----T-DDLKKYTLDADILVVATGVKHLIKADMVK 227 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc----C-CCHHHHHhhCCEEEEccCCccccCHHHcC
Confidence 457777641111134455554 47888888653 2 2466678999999863 34567777775
No 183
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=39.02 E-value=12 Score=35.48 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=18.7
Q ss_pred HHHHhccCCEEEEecCCCcccccccccc
Q psy5259 221 LDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 221 l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
..++++.+|+|+.+.- +.+++-++|..
T Consensus 112 ~~~~~~~~DvVvd~~d-~~~~r~~~n~~ 138 (355)
T PRK05597 112 ALDELRDADVILDGSD-NFDTRHLASWA 138 (355)
T ss_pred HHHHHhCCCEEEECCC-CHHHHHHHHHH
Confidence 4578888998887765 45666666543
No 184
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=38.95 E-value=15 Score=31.85 Aligned_cols=49 Identities=8% Similarity=0.109 Sum_probs=36.6
Q ss_pred ccCHHHHhcc--CCEEEEecCCCcc-----------cccccccccc-----cCcCCCHHHHHHHHHc
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALTKD-----------TEQLIGRKQF-----RGGLLDQEALVEFLRD 266 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t~~-----------T~~li~~~~~-----RG~lvde~aL~~aL~~ 266 (294)
..++++++++ .|+|++++|.+.. -+++++.+-+ ||.+|+.++|..+|..
T Consensus 135 ~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 135 IDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred HHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 3568888865 9999999997764 2344444443 9999999999998864
No 185
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=38.76 E-value=1e+02 Score=29.81 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=27.5
Q ss_pred CHHHHhccCCEEEEecCCCcccccccccccccCcCCCHHHHHHHHHcC-CceEEEeeCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDK-KIGGAGLDVMI 278 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~~~RG~lvde~aL~~aL~~g-~i~ga~LDV~~ 278 (294)
++.+.+..+|+|+.+.|. ... +++.+.+..+++.. +.....+|..-
T Consensus 235 ~~~~~l~~aDvVI~aT~s---~~~----------~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 235 ELPEALAEADIVISSTGA---PHP----------IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred HHHHHhccCCEEEECCCC---CCc----------EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 355667889999988763 233 35555555555433 23346778754
No 186
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.65 E-value=1.8e+02 Score=25.44 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=55.5
Q ss_pred cEEEeCCCCCCCHHHHhhc-CCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEe
Q psy5259 52 SALLCNPHQKVDKEALDES-GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTF 130 (294)
Q Consensus 52 d~~~~~~~~~~~~~~l~~~-~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~ 130 (294)
+.++..+ +-++.+..+.+ .-.-++|-++ |+|.-=++.+.++||.+ .||+.+.+=+. .++..-+.-+|++-..
T Consensus 67 ~~~vGaG-TV~~~~~~~~a~~aGA~FivsP--~~~~~v~~~~~~~~i~~--iPG~~T~~E~~--~A~~~Gad~vklFPa~ 139 (213)
T PRK06552 67 EVLIGAG-TVLDAVTARLAILAGAQFIVSP--SFNRETAKICNLYQIPY--LPGCMTVTEIV--TALEAGSEIVKLFPGS 139 (213)
T ss_pred CeEEeee-eCCCHHHHHHHHHcCCCEEECC--CCCHHHHHHHHHcCCCE--ECCcCCHHHHH--HHHHcCCCEEEECCcc
Confidence 3444432 34555444433 2334555554 33443345567778765 67776553332 2232333445543222
Q ss_pred eccccccccchhhccCcEEEeeCCCchHHHHHHHHHH
Q psy5259 131 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGL 167 (294)
Q Consensus 131 ~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l 167 (294)
..|.+.+..-...-.++++.-++|.+.+.++||.-+-
T Consensus 140 ~~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aG 176 (213)
T PRK06552 140 TLGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAG 176 (213)
T ss_pred cCCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCC
Confidence 3343333211112234888888888888888887643
No 187
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.50 E-value=2e+02 Score=26.37 Aligned_cols=59 Identities=8% Similarity=-0.030 Sum_probs=37.4
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+. -..+ .+....|. ++..|..+... | ..+.+.++.+|++++.. ...++.+.+.
T Consensus 160 k~vvViGr-s~iVG~Pla~lL~~~~atVtv~hs~----T-~~l~~~~~~ADIvi~avG~p~~v~~~~vk 222 (285)
T PRK10792 160 LNAVVVGA-SNIVGRPMSLELLLAGCTVTVCHRF----T-KNLRHHVRNADLLVVAVGKPGFIPGEWIK 222 (285)
T ss_pred CEEEEECC-CcccHHHHHHHHHHCCCeEEEEECC----C-CCHHHHHhhCCEEEEcCCCcccccHHHcC
Confidence 46777774 1111 34445454 47888888653 2 34666789999999763 4567777775
No 188
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=37.56 E-value=39 Score=33.36 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=51.7
Q ss_pred CCceEEE-eccccCcccC-hhhHhhCCcEEeecCCCChhhhhhhhHHHHHHcc--CcceEEEeeccccccccchhhccCc
Q psy5259 72 ENLKVIS-TFSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK--NLKVISTFSVGHDHLHLDQIKSRGI 147 (294)
Q Consensus 72 ~~lk~i~-~~~~G~d~id-~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~--~Lk~i~~~~~G~d~id~~~~~~~GI 147 (294)
++++.++ --+.|+.++- ++.-..-+|+|.|+++.++.+++|..+++.+++. -++. .+ ..-.|.
T Consensus 189 ~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~-----~~--------~~LaGK 255 (476)
T PTZ00075 189 KKIVGVSEETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRA-----TD--------VMIAGK 255 (476)
T ss_pred hccEeeeecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHHHHh-----cC--------CCcCCC
Confidence 5566666 5566776642 2222345899999999999999999998887652 1111 00 123455
Q ss_pred EEEeeC-CCchHHHHHHHHHH
Q psy5259 148 RVGTVG-PVSSDAVAEFNIGL 167 (294)
Q Consensus 148 ~v~~~~-~~~~~~VAE~al~l 167 (294)
+|..++ |..+..+|..+.++
T Consensus 256 tVgVIG~G~IGr~vA~rL~a~ 276 (476)
T PTZ00075 256 TVVVCGYGDVGKGCAQALRGF 276 (476)
T ss_pred EEEEECCCHHHHHHHHHHHHC
Confidence 555544 56666666666543
No 189
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=37.25 E-value=39 Score=29.56 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=42.0
Q ss_pred HHHHccCCcEEEeC-CCCCCCHHHHhhcCCCceEEEeccc-----cCcccChhhHhhCCcEEeec
Q psy5259 44 FIEKLKGCSALLCN-PHQKVDKEALDESGENLKVISTFSV-----GHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 44 ~~~~l~~~d~~~~~-~~~~~~~~~l~~~~~~lk~i~~~~~-----G~d~id~~~~~~~gI~v~~~ 102 (294)
.+... ..+++++. +...+++..++. ++-++..+.. |+||+-...++++++.+.-.
T Consensus 76 ~V~k~-~~~vv~V~GGd~~vNR~AvE~---~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~ 136 (216)
T PRK03892 76 VKQRF-LNYLIYVQGGDLRVNRYAIER---GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFS 136 (216)
T ss_pred HHHhc-cceEEEEECCcHHHHHHHHhc---ccceeecccccCcCCCccHHHHHHHHHcCeEEEEe
Confidence 33344 46777775 467899998883 6888887765 59999999999999887554
No 190
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.50 E-value=2e+02 Score=22.29 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=23.0
Q ss_pred cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCCCC
Q psy5259 26 MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNPHQ 60 (294)
Q Consensus 26 ~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~~~ 60 (294)
+|+++.... ..+.+++.+... ++|+++.+...
T Consensus 27 G~~vi~lG~---~vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 27 GFEVIYTGL---RQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred CCEEEECCC---CCCHHHHHHHHHHcCCCEEEEcccc
Confidence 789988765 467888887663 57888876443
No 191
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=35.74 E-value=41 Score=29.90 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=28.7
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccc------ccc--cCcCCCHHHHHHHHHc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR------KQF--RGGLLDQEALVEFLRD 266 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~------~~~--RG~lvde~aL~~aL~~ 266 (294)
.+.++++++||+|++++| .+....++.. ..+ =..-+..+.|.+.+..
T Consensus 53 ~~~~~~~~~aDvVilav~-p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~~~~ 107 (258)
T PRK06476 53 KDNQAVVDRSDVVFLAVR-PQIAEEVLRALRFRPGQTVISVIAATDRAALLEWIGH 107 (258)
T ss_pred CCHHHHHHhCCEEEEEeC-HHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHhCC
Confidence 478888999999999999 3333333321 111 2233566666666654
No 192
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=35.43 E-value=40 Score=30.39 Aligned_cols=16 Identities=13% Similarity=0.382 Sum_probs=13.5
Q ss_pred HHhccCCEEEEecCCC
Q psy5259 223 TLCAQSDFIFVTCALT 238 (294)
Q Consensus 223 ell~~sDvV~l~~p~t 238 (294)
+.+++||+|++++|..
T Consensus 53 ~~~~~aDlVilavp~~ 68 (279)
T PRK07417 53 SLLKDCDLVILALPIG 68 (279)
T ss_pred hHhcCCCEEEEcCCHH
Confidence 4678999999999943
No 193
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=35.42 E-value=3.7e+02 Score=24.92 Aligned_cols=60 Identities=5% Similarity=-0.058 Sum_probs=37.5
Q ss_pred CeEEEecCCCCCCchhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRVSPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++..-.-.+.-..|. ++..|..+... |+ .+.+.++++|++++. ....++++++.
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~----T~-nl~~~~~~ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR----TP-DPESIVREADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC----CC-CHHHHHhhCCEEEEcCCCcCccCHHHcC
Confidence 466776641111134445554 47899988764 32 355677899999975 34567788886
No 194
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=35.18 E-value=52 Score=29.64 Aligned_cols=19 Identities=11% Similarity=0.217 Sum_probs=16.2
Q ss_pred cCHHHHhccCCEEEEecCC
Q psy5259 219 VPLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~ 237 (294)
.+..++.++||+|++++|-
T Consensus 57 ~~~~e~~~~aDvVilav~p 75 (279)
T PRK07679 57 HNKKELLTDANILFLAMKP 75 (279)
T ss_pred CCHHHHHhcCCEEEEEeCH
Confidence 3677888999999999994
No 195
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=34.75 E-value=41 Score=30.71 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=17.5
Q ss_pred HHHhccCCEEEEecCCCcccccccc
Q psy5259 222 DTLCAQSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 222 ~ell~~sDvV~l~~p~t~~T~~li~ 246 (294)
.+....||+|++++|-. .|..++.
T Consensus 59 ~~~~~~aD~VivavPi~-~~~~~l~ 82 (279)
T COG0287 59 AEAAAEADLVIVAVPIE-ATEEVLK 82 (279)
T ss_pred hhhcccCCEEEEeccHH-HHHHHHH
Confidence 67788899999999944 4444443
No 196
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=34.74 E-value=48 Score=30.11 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=16.0
Q ss_pred ccCHHHHhccCCEEEEecC
Q psy5259 218 LVPLDTLCAQSDFIFVTCA 236 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p 236 (294)
..+-+++..++|+|++++.
T Consensus 53 ~~~~~~~~~~advv~LavK 71 (266)
T COG0345 53 TTDNQEAVEEADVVFLAVK 71 (266)
T ss_pred cCcHHHHHhhCCEEEEEeC
Confidence 4467788999999999997
No 197
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=34.73 E-value=2.7e+02 Score=25.61 Aligned_cols=104 Identities=11% Similarity=0.119 Sum_probs=61.1
Q ss_pred eEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHhhcCCCceEEEec
Q psy5259 5 KLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 5 kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
++++.++ -..+ .+....|. +++.|..|... | ..+.+.++.+|++++. ....++.+++.. . -...
T Consensus 158 ~~vVVGr-S~iVGkPla~lL~~~naTVtvcHs~----T-~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~---g---avVI 225 (283)
T COG0190 158 NVVVVGR-SNIVGKPLALLLLNANATVTVCHSR----T-KDLASITKNADIVVVAVGKPHFIKADMVKP---G---AVVI 225 (283)
T ss_pred EEEEECC-CCcCcHHHHHHHHhCCCEEEEEcCC----C-CCHHHHhhhCCEEEEecCCccccccccccC---C---CEEE
Confidence 4566654 2222 34444444 48999988763 3 3456678899999975 234566677752 2 1234
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
-+|+++++. +-.+ -.+|.+.+.++-..++-+||..+..+
T Consensus 226 DVGinrv~~------~kl~-----------------------------------GDVdf~~v~~~a~~iTPVPGGVGPmT 264 (283)
T COG0190 226 DVGINRVND------GKLV-----------------------------------GDVDFDSVKEKASAITPVPGGVGPMT 264 (283)
T ss_pred ecCCccccC------CceE-----------------------------------eeccHHHHHHhhcccCCCCCccCHHH
Confidence 456666543 1111 12456677788888888898766544
Q ss_pred H
Q psy5259 161 A 161 (294)
Q Consensus 161 A 161 (294)
.
T Consensus 265 v 265 (283)
T COG0190 265 V 265 (283)
T ss_pred H
Confidence 3
No 198
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=34.54 E-value=2.7e+02 Score=23.15 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=31.0
Q ss_pred CeEEEecCCCCCC-chhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+. -..+ .+....|.+ ++.|..+... | +.+.+.++++|++++.. ...++.+.+.
T Consensus 37 k~v~VvGr-s~~VG~Pla~lL~~~~atVt~~h~~----T-~~l~~~~~~ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 37 KKVVVVGR-SNIVGKPLAMLLLNKGATVTICHSK----T-KNLQEITRRADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp -EEEEE-T-TTTTHHHHHHHHHHTT-EEEEE-TT----S-SSHHHHHTTSSEEEE-SSSTT-B-GGGS-
T ss_pred CEEEEECC-cCCCChHHHHHHHhCCCeEEeccCC----C-CcccceeeeccEEeeeecccccccccccc
Confidence 46777774 2222 344455544 7888887653 2 34556778999999762 2345556554
No 199
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=34.34 E-value=34 Score=33.13 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=18.2
Q ss_pred CHHHHhccCCEEEEecCCCcccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
++.+.+.+||+|+.+.+. ...+|+.+
T Consensus 235 ~l~~~l~~aDiVI~aT~a---~~~vi~~~ 260 (414)
T PRK13940 235 ELPQLIKKADIIIAAVNV---LEYIVTCK 260 (414)
T ss_pred HHHHHhccCCEEEECcCC---CCeeECHH
Confidence 456779999999999873 33455443
No 200
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.96 E-value=2.4e+02 Score=27.53 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=45.5
Q ss_pred CeEEEecCCCCC-CchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 4 PKLLLTRNDYPR-VSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 4 ~kvl~~~~~~~~-~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
.+|+|.+ +.. -....+.|..+++|+.++.+. ...+. .+.+++. ... . ..+.+.++. .. -+|-++++
T Consensus 7 ~~v~v~G--~G~sG~a~~~~L~~g~~v~v~D~~~--~~~~~-~~~~~~~-~~~-~---~~~~~~~~~--~d-~vV~SPgI 73 (454)
T PRK01368 7 QKIGVFG--LGKTGISVYEELQNKYDVIVYDDLK--ANRDI-FEELYSK-NAI-A---ALSDSRWQN--LD-KIVLSPGI 73 (454)
T ss_pred CEEEEEe--ecHHHHHHHHHHhCCCEEEEECCCC--CchHH-HHhhhcC-cee-c---cCChhHhhC--CC-EEEECCCC
Confidence 4677776 331 124456666688888877432 22222 2222221 111 1 222334432 22 36667777
Q ss_pred cCcccChhhHhhCCcEEeec
Q psy5259 83 GHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~ 102 (294)
..|+-.+..++++||++..-
T Consensus 74 ~~~~p~~~~a~~~gi~v~~e 93 (454)
T PRK01368 74 PLTHEIVKIAKNFNIPITSD 93 (454)
T ss_pred CCCCHHHHHHHHCCCceecH
Confidence 77777777788889887554
No 201
>PRK07411 hypothetical protein; Validated
Probab=33.92 E-value=15 Score=35.23 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=20.1
Q ss_pred CHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
+..++++++|+|+.++= +.+|+.++|....
T Consensus 121 ~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~ 150 (390)
T PRK07411 121 NALDILAPYDVVVDGTD-NFPTRYLVNDACV 150 (390)
T ss_pred hHHHHHhCCCEEEECCC-CHHHHHHHHHHHH
Confidence 35577888887776654 5567777775543
No 202
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.25 E-value=3.9e+02 Score=24.54 Aligned_cols=59 Identities=8% Similarity=0.042 Sum_probs=37.6
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.+|++.++ -..+ .+....|. ++..|..+... | ..+.+.++.+|++++. ....++++++.
T Consensus 159 k~vvViGr-S~~VGkPla~lL~~~~ATVt~chs~----T-~dl~~~~k~ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 159 AYAVVVGA-SNVVGKPVSQLLLNAKATVTTCHRF----T-TDLKSHTTKADILIVAVGKPNFITADMVK 221 (282)
T ss_pred CEEEEECC-CCcchHHHHHHHHHCCCEEEEEcCC----C-CCHHHHhhhcCEEEEccCCcCcCCHHHcC
Confidence 35666664 2222 34445554 47899888653 3 3466678999999975 23467888886
No 203
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=32.93 E-value=2.9e+02 Score=23.10 Aligned_cols=55 Identities=7% Similarity=0.198 Sum_probs=35.6
Q ss_pred HccCCcEEEeC-CCCC-CCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeec
Q psy5259 47 KLKGCSALLCN-PHQK-VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 47 ~l~~~d~~~~~-~~~~-~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~ 102 (294)
.++.+|++++. +... ++.+.+++. ++=-+++..+--=+-||++.+++.++....+
T Consensus 75 a~~~adi~vtaTG~~~vi~~e~~~~m-kdgail~n~Gh~d~Eid~~~L~~~~~~~~~v 131 (162)
T PF00670_consen 75 ALRDADIFVTATGNKDVITGEHFRQM-KDGAILANAGHFDVEIDVDALEANAVEREEV 131 (162)
T ss_dssp HTTT-SEEEE-SSSSSSB-HHHHHHS--TTEEEEESSSSTTSBTHHHHHTCTSEEEEE
T ss_pred HHhhCCEEEECCCCccccCHHHHHHh-cCCeEEeccCcCceeEeeccccccCcEEEEc
Confidence 56789999974 4434 588999887 5555666555444558999988887666554
No 204
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=32.71 E-value=67 Score=27.37 Aligned_cols=142 Identities=20% Similarity=0.239 Sum_probs=74.9
Q ss_pred EEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCC----CHHHHHHHccCCcEEEeCCCCCCC--HHHHhh----cCCCc
Q psy5259 6 LLLTRNDYPRVSPAYDILED-MFDIITYPISEGRM----PRDIFIEKLKGCSALLCNPHQKVD--KEALDE----SGENL 74 (294)
Q Consensus 6 vl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~----~~e~~~~~l~~~d~~~~~~~~~~~--~~~l~~----~~~~l 74 (294)
||++.| -...+...+.|++ +++++.++...... ..+.....+.++|.++..+...+. -+.+.. ...+.
T Consensus 1 iLi~r~-~~~~~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~av~~~~~~~~~~~~~~~~~~ 79 (239)
T cd06578 1 VLVTRP-RPQADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGL 79 (239)
T ss_pred CEecCc-hHHhHHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHHHHHHHHHHHHhhCCccccCC
Confidence 456664 2212455667765 67777665432111 133444566678888876432221 122221 12334
Q ss_pred eEEEeccccCcccChhhHhhCCcEEeec-CCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeC
Q psy5259 75 KVISTFSVGHDHLHLDQIKSRGIRVGTV-GPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG 153 (294)
Q Consensus 75 k~i~~~~~G~d~id~~~~~~~gI~v~~~-~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~ 153 (294)
++++. | .--.+.+++.|+.+... ++.+++.++++.... ...+-+++...|.+....-.+.+.+.|..+...+
T Consensus 80 ~~~av---G--~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~--~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~ 152 (239)
T cd06578 80 KIAAV---G--PKTAEALREAGLTADFVPEEGDSEGLLELLELQ--DGKGKRILRPRGGRAREDLAEALRERGAEVDEVE 152 (239)
T ss_pred EEEEE---C--HHHHHHHHHcCCCceeCCCccCHHHHHHHHHhc--CCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEE
Confidence 44331 2 22345678888887776 667777777765544 2355555555555443333455667787777666
Q ss_pred CC
Q psy5259 154 PV 155 (294)
Q Consensus 154 ~~ 155 (294)
-+
T Consensus 153 ~Y 154 (239)
T cd06578 153 VY 154 (239)
T ss_pred EE
Confidence 43
No 205
>PLN00203 glutamyl-tRNA reductase
Probab=32.62 E-value=41 Score=33.65 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=13.8
Q ss_pred CHHHHhccCCEEEEecC
Q psy5259 220 PLDTLCAQSDFIFVTCA 236 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p 236 (294)
++.+.+.+||+|+.+.|
T Consensus 322 dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 322 EMLACAAEADVVFTSTS 338 (519)
T ss_pred hHHHHHhcCCEEEEccC
Confidence 46677899999998876
No 206
>PLN02712 arogenate dehydrogenase
Probab=32.48 E-value=50 Score=34.11 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=20.9
Q ss_pred CHHHHh-ccCCEEEEecCCCcccccccccc
Q psy5259 220 PLDTLC-AQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 220 ~l~ell-~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
++++++ .+||+|++|+|. ..+..++..-
T Consensus 100 d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 100 DPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 567765 469999999995 4677777653
No 207
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.14 E-value=3.9e+02 Score=24.49 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=36.6
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++ -..+ .+....|. ++..|..+... |+ .+.+.++++|++++. ....++.+++.
T Consensus 157 k~vvViGr-S~iVGkPla~lL~~~~atVtichs~----T~-~l~~~~~~ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 157 KRVVIVGR-SNIVGRPLAGLMVNHDATVTIAHSK----TR-NLKQLTKEADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred CEEEEECC-CccchHHHHHHHHHCCCEEEEECCC----CC-CHHHHHhhCCEEEEccCCcCccCHHHcC
Confidence 45666664 2212 34445554 47888888653 22 355677899999975 23467788876
No 208
>PLN02858 fructose-bisphosphate aldolase
Probab=31.88 E-value=40 Score=37.83 Aligned_cols=27 Identities=4% Similarity=0.064 Sum_probs=23.4
Q ss_pred cCHHHHhccCCEEEEecCCCccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
.+..|+.++||+|++++|-.+..+..+
T Consensus 52 ~s~~e~a~~advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 52 DSPAEAAKDAAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CCHHHHHhcCCEEEEEcCChHHHHHHH
Confidence 479999999999999999888777664
No 209
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.77 E-value=4.1e+02 Score=24.43 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=37.0
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++ -..+ .+.-..|. ++..|..|... |+ .+.+.++++|++++. ....++.+++.
T Consensus 158 k~vvVvGr-S~iVGkPla~lL~~~~atVtichs~----T~-~l~~~~~~ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 158 KRAVVIGR-SNIVGKPVAQLLLNENATVTIAHSR----TK-DLPQVAKEADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred CEEEEECC-CCcchHHHHHHHHHCCCEEEEeCCC----CC-CHHHHHhhCCEEEEecCCcCccCHHHcC
Confidence 45666664 2212 34445554 47889888764 32 355678899999975 23467788886
No 210
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=31.69 E-value=39 Score=32.24 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=37.9
Q ss_pred CcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259 201 GLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 201 ~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
-+.||++.+.|| -.|++..++++..+.+|+++-+.- +++.|..+
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~e 281 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRKE 281 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCHH
Confidence 479999999999 235667789999999999987654 67888888
Q ss_pred cc
Q psy5259 249 QF 250 (294)
Q Consensus 249 ~~ 250 (294)
+|
T Consensus 282 h~ 283 (420)
T COG0499 282 HF 283 (420)
T ss_pred HH
Confidence 88
No 211
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.68 E-value=2.1e+02 Score=27.47 Aligned_cols=92 Identities=21% Similarity=0.117 Sum_probs=42.6
Q ss_pred CCCeEEEecCCCCCCchhHHHh-hccceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259 2 SKPKLLLTRNDYPRVSPAYDIL-EDMFDIITYPISEGRMPRDIFIEKLK--GCSALLCNPHQKVDKEALDESGENLKVIS 78 (294)
Q Consensus 2 ~k~kvl~~~~~~~~~~~~~~~l-~~~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~~~~~~~~~l~~~~~~lk~i~ 78 (294)
+..+|++++. -+.--..-+.| +.+++|..++... ....++..+.++ +..++... ...+.+.. ..+ +|.
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~~V~~~d~~~-~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~--~d~-vv~ 74 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGAKVILTDEKE-EDQLKEALEELGELGIELVLGE----YPEEFLEG--VDL-VVV 74 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHHHHHhcCCEEEeCC----cchhHhhc--CCE-EEE
Confidence 4567888874 22112223333 4488998876531 011122223333 23322211 11232221 122 333
Q ss_pred eccccCcccChhhHhhCCcEEeec
Q psy5259 79 TFSVGHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 79 ~~~~G~d~id~~~~~~~gI~v~~~ 102 (294)
+.++..++-.+..++++||.+-.-
T Consensus 75 ~~g~~~~~~~~~~a~~~~i~~~~~ 98 (450)
T PRK14106 75 SPGVPLDSPPVVQAHKKGIEVIGE 98 (450)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEeH
Confidence 445555666667778888877544
No 212
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=30.97 E-value=59 Score=29.03 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=15.1
Q ss_pred CHHHHhccCCEEEEecCC
Q psy5259 220 PLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~ 237 (294)
+..+++.+||+|++++|-
T Consensus 50 ~~~~~~~~~D~Vilavkp 67 (260)
T PTZ00431 50 SNEELAKTCDIIVLAVKP 67 (260)
T ss_pred ChHHHHHhCCEEEEEeCH
Confidence 566778899999999883
No 213
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=30.91 E-value=60 Score=29.19 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=17.3
Q ss_pred ccCHHHHhccCCEEEEecCC
Q psy5259 218 LVPLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~ 237 (294)
+.++++++.++|+|+++.|.
T Consensus 52 ~~~~~ell~~~DvVvi~a~~ 71 (265)
T PRK13304 52 CLSIDELVEDVDLVVECASV 71 (265)
T ss_pred ECCHHHHhcCCCEEEEcCCh
Confidence 45799999999999999874
No 214
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.80 E-value=4.3e+02 Score=24.38 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=37.0
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.+. -..+ .+....|. ++..|..+... |+ .+.+.++++|++++. ....++.+++.
T Consensus 161 k~vvViGr-S~iVGkPla~lL~~~~aTVt~chs~----T~-~l~~~~~~ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 161 SDAVVIGR-SNIVGKPMACLLLGENCTVTTVHSA----TR-DLADYCSKADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred CEEEEECC-CccchHHHHHHHhhCCCEEEEeCCC----CC-CHHHHHhhCCEEEEccCCcCccCHHHcC
Confidence 45666664 2222 34444454 47899888763 32 355678899999976 23457888886
No 215
>PRK06444 prephenate dehydrogenase; Provisional
Probab=30.55 E-value=47 Score=28.66 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=14.7
Q ss_pred hccCCEEEEecCCCccccccc
Q psy5259 225 CAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 225 l~~sDvV~l~~p~t~~T~~li 245 (294)
+++||+|++++|.. .+..++
T Consensus 29 ~~~~DlVilavPv~-~~~~~i 48 (197)
T PRK06444 29 IKKADHAFLSVPID-AALNYI 48 (197)
T ss_pred ECCCCEEEEeCCHH-HHHHHH
Confidence 68999999999954 334443
No 216
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=30.25 E-value=63 Score=29.54 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=27.0
Q ss_pred cCCC--cccCHHHHhccC--CEEEEecCCCc----------ccccccccccc
Q psy5259 213 ELGA--QLVPLDTLCAQS--DFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 213 ~~~~--~~~~l~ell~~s--DvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
.++. .+.+++++++.- |+|+++.|-.- .-+|++.++=|
T Consensus 49 ~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPl 100 (342)
T COG0673 49 EFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPL 100 (342)
T ss_pred HcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCC
Confidence 3444 467899999974 89999999443 25566666665
No 217
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.01 E-value=3.7e+02 Score=24.54 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=33.3
Q ss_pred CeEEEecCCCCCC-chhHHH-hhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDI-LEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~-l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+.. ..+ .+.... +.++.+|..+... .+.+.+.++++|+++... ...++.+.+.
T Consensus 160 k~vvViG~g-g~vGkpia~~L~~~gatVtv~~~~-----t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk 222 (283)
T PRK14192 160 KHAVVVGRS-AILGKPMAMMLLNANATVTICHSR-----TQNLPELVKQADIIVGAVGKPELIKKDWIK 222 (283)
T ss_pred CEEEEECCc-HHHHHHHHHHHHhCCCEEEEEeCC-----chhHHHHhccCCEEEEccCCCCcCCHHHcC
Confidence 467777641 111 222333 3456788777542 245666778999998753 3355566554
No 218
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=29.65 E-value=31 Score=29.32 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=15.6
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
.+.++.+++||++++++|-.....+-.|-
T Consensus 68 ~~~~~ai~~adv~~I~VpTP~~~~~~~Dl 96 (185)
T PF03721_consen 68 TDIEEAIKDADVVFICVPTPSDEDGSPDL 96 (185)
T ss_dssp SEHHHHHHH-SEEEE----EBETTTSBET
T ss_pred hhhhhhhhccceEEEecCCCccccCCccH
Confidence 35788899999999999933333333333
No 219
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=29.33 E-value=26 Score=30.11 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=11.7
Q ss_pred cCcCCCEEEEEcc
Q psy5259 200 IGLNGSTVGIVGT 212 (294)
Q Consensus 200 ~~l~gktvgIiG~ 212 (294)
+.|.+++|.|+|.
T Consensus 17 ~~L~~s~VlIiG~ 29 (197)
T cd01492 17 KRLRSARILLIGL 29 (197)
T ss_pred HHHHhCcEEEEcC
Confidence 6789999999998
No 220
>PRK08223 hypothetical protein; Validated
Probab=29.15 E-value=40 Score=31.00 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=19.1
Q ss_pred cCHHHHhccCCEEEEecCCC-ccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALT-KDTEQLIGRKQ 249 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t-~~T~~li~~~~ 249 (294)
.+.+++++++|+|+-++..- -+|+.++|...
T Consensus 109 ~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c 140 (287)
T PRK08223 109 ENADAFLDGVDVYVDGLDFFEFDARRLVFAAC 140 (287)
T ss_pred cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHH
Confidence 35677888888887655421 25666665443
No 221
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=28.92 E-value=70 Score=29.78 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=16.5
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.+.+++++++|+|++++|-.
T Consensus 41 ~~~~~~~~~~D~vFlalp~~ 60 (310)
T TIGR01851 41 AERAKLLNAADVAILCLPDD 60 (310)
T ss_pred CCHhHhhcCCCEEEECCCHH
Confidence 35678889999999999944
No 222
>PRK08507 prephenate dehydrogenase; Validated
Probab=28.69 E-value=73 Score=28.57 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=15.0
Q ss_pred cCHHHHhccCCEEEEecCCCc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTK 239 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~ 239 (294)
.+.+++. +||+|++++|...
T Consensus 51 ~~~~~~~-~aD~Vilavp~~~ 70 (275)
T PRK08507 51 VSFEELK-KCDVIFLAIPVDA 70 (275)
T ss_pred CCHHHHh-cCCEEEEeCcHHH
Confidence 3567765 4999999999543
No 223
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=28.22 E-value=1.5e+02 Score=27.10 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=51.9
Q ss_pred HHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCc
Q psy5259 45 IEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNL 124 (294)
Q Consensus 45 ~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~L 124 (294)
++.++++|++++- ..+.+..+++.++.+-+++... |+ +-+..++..+..+..-
T Consensus 32 l~~L~~aDvI~~e-dtr~t~~ll~~~~i~~~~~~~~----~~-------------------~~~~~~~~i~~~l~~G--- 84 (287)
T PRK14994 32 LEVLQAVDLIAAE-DTRHTGLLLQHFAINARLFALH----DH-------------------NEQQKAETLLAKLQEG--- 84 (287)
T ss_pred HHHHHhCCEEEEe-CCcchHHHHhhcCCCCEEEEcc----CC-------------------CHHHHHHHHHHHHHCC---
Confidence 3467888988875 3455666777765554544441 11 2223333333332222
Q ss_pred ceEEEee-cccccc-c-----cchhhccCcEEEeeCCCchHHHHHHHHH
Q psy5259 125 KVISTFS-VGHDHL-H-----LDQIKSRGIRVGTVGPVSSDAVAEFNIG 166 (294)
Q Consensus 125 k~i~~~~-~G~d~i-d-----~~~~~~~GI~v~~~~~~~~~~VAE~al~ 166 (294)
+-+...+ +|.-.+ | +..+.+.||.|..+||.++-..|=.+.+
T Consensus 85 ~~ValvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG 133 (287)
T PRK14994 85 QNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAG 133 (287)
T ss_pred CeEEEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcC
Confidence 3334443 443332 2 4567788999999999776554444433
No 224
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=28.22 E-value=34 Score=31.24 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=16.3
Q ss_pred HHhccCCEEEEecCCCccccccc
Q psy5259 223 TLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 223 ell~~sDvV~l~~p~t~~T~~li 245 (294)
+.++++|+|++++|-. .++..+
T Consensus 55 ~~~~~~dvIi~~vp~~-~~~~v~ 76 (298)
T TIGR00872 55 QRLSAPRVVWVMVPHG-IVDAVL 76 (298)
T ss_pred hhcCCCCEEEEEcCch-HHHHHH
Confidence 3456789999999976 666554
No 225
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.01 E-value=4.8e+02 Score=23.97 Aligned_cols=60 Identities=3% Similarity=-0.027 Sum_probs=36.7
Q ss_pred CeEEEecCCCCCCchhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRVSPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++..-.-.+....|. ++..|..|... |+ .+.+.++.+|++++. ....++++++.
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~----T~-~l~~~~~~ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK----TQ-NLPSIVRQADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----CC-CHHHHHhhCCEEEEeCCCcCccCHHHcC
Confidence 456666642111134444555 47899888764 32 355678899999975 23467788876
No 226
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.97 E-value=5.3e+02 Score=24.45 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=37.1
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++ -..+ .+.-..|. ++..|..+... |++ +.+.++++|++++. ....++.+++.
T Consensus 215 K~vvVIGR-S~iVGkPla~LL~~~~ATVTicHs~----T~n-l~~~~~~ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 215 KNAVVIGR-SNIVGLPMSLLLQRHDATVSTVHAF----TKD-PEQITRKADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred CEEEEECC-CccccHHHHHHHHHCCCEEEEEcCC----CCC-HHHHHhhCCEEEEccCCcCccCHHHcC
Confidence 45666664 2212 34445554 47888888764 322 55677899999975 34467888886
No 227
>PRK08655 prephenate dehydrogenase; Provisional
Probab=27.60 E-value=71 Score=31.08 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=19.3
Q ss_pred CHHHHhccCCEEEEecCCCccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
+.++.+++||+|++++|.. .+..++
T Consensus 51 ~~~e~~~~aDvVIlavp~~-~~~~vl 75 (437)
T PRK08655 51 DNIDAAKDADIVIISVPIN-VTEDVI 75 (437)
T ss_pred CHHHHhccCCEEEEecCHH-HHHHHH
Confidence 6788899999999999953 444444
No 228
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=27.48 E-value=54 Score=30.22 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=14.8
Q ss_pred CHHHHhccCCEEEEecCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t 238 (294)
++.+.+.++|+|+.+.|..
T Consensus 231 ~~~~~l~~aDvVi~at~~~ 249 (311)
T cd05213 231 ELLELLNEADVVISATGAP 249 (311)
T ss_pred HHHHHHhcCCEEEECCCCC
Confidence 3567788899999998843
No 229
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=27.15 E-value=3.3e+02 Score=25.59 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=76.5
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCC-----CHHHHHHHc--cCCcEEEeCCCCCCC-----------
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRM-----PRDIFIEKL--KGCSALLCNPHQKVD----------- 63 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~-----~~e~~~~~l--~~~d~~~~~~~~~~~----------- 63 (294)
-.+|++|.+. ...+..+.|++ +++++.++...... ..+..++.+ .++|.++..+...+.
T Consensus 11 g~rIlvtr~~--~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~~~~~~l~~~~~ 88 (381)
T PRK07239 11 GFTVGVTAAR--RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFRGWVEAADGWGL 88 (381)
T ss_pred CcEEEEeccC--CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHHHHHHHHHHcCC
Confidence 3579999853 23566677776 78887765422111 112344455 468988876533322
Q ss_pred -HHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecC-CCChhhhhhhhHHHHHHccCcceEEEeeccc---cc--
Q psy5259 64 -KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIGLAIAVKNLKVISTFSVGH---DH-- 136 (294)
Q Consensus 64 -~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~-~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~---d~-- 136 (294)
.+.++.+ .++|+++. |- =-.+++++.|+.+...| ..+++.+++..... ..+.-+++...+.+. +.
T Consensus 89 ~~~~~~~l-~~~~i~aV---G~--~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~--~~~g~~vli~~~~~~~~~~~~~ 160 (381)
T PRK07239 89 ADELLEAL-SSARLLAR---GP--KATGAIRAAGLREEWSPASESSAEVLEYLLEE--GVAGKRIAVQLHGATDEWEPLP 160 (381)
T ss_pred hHHHHHHH-cCCeEEEE---Cc--cHHHHHHHcCCCCccCCCCCccHHHHHHHhcC--CCCCCEEEEEcCCCccccCchH
Confidence 1122222 34555442 21 12356788999877664 45677776643321 123444343222211 11
Q ss_pred cccchhhccCcEEEeeCCCc
Q psy5259 137 LHLDQIKSRGIRVGTVGPVS 156 (294)
Q Consensus 137 id~~~~~~~GI~v~~~~~~~ 156 (294)
.-.+.++++|..|...+-|.
T Consensus 161 ~L~~~L~~~G~~V~~~~vY~ 180 (381)
T PRK07239 161 EFLEALRAAGAEVVPVPVYR 180 (381)
T ss_pred HHHHHHHHCCCEEEEeCcEE
Confidence 12456788899988877654
No 230
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=27.01 E-value=68 Score=31.88 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=42.4
Q ss_pred ccCHHHHhcc---CCEEEEecCCCccccccccc-------ccc--cCcCC---CHHHHHHHHHcCCceEEEeeCCCCCC
Q psy5259 218 LVPLDTLCAQ---SDFIFVTCALTKDTEQLIGR-------KQF--RGGLL---DQEALVEFLRDKKIGGAGLDVMIPEP 281 (294)
Q Consensus 218 ~~~l~ell~~---sDvV~l~~p~t~~T~~li~~-------~~~--RG~lv---de~aL~~aL~~g~i~ga~LDV~~~EP 281 (294)
..+++|+.+. +|+|++++|-.+.++..++. ..+ -++-+ +...+.+.+++..+.....=|.-.++
T Consensus 60 a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 60 FKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred CCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 3478888776 99999999988877776621 111 22223 56667777777777755555666555
No 231
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=26.54 E-value=3.1e+02 Score=28.92 Aligned_cols=89 Identities=27% Similarity=0.286 Sum_probs=48.5
Q ss_pred CCCC-eEEEecCCCCCC-chh-HHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceE
Q psy5259 1 MSKP-KLLLTRNDYPRV-SPA-YDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKV 76 (294)
Q Consensus 1 m~k~-kvl~~~~~~~~~-~~~-~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~ 76 (294)
|+|+ +|++.+ +... -.. .+.|.+ +++|...+... .. . .+.++...+.+..+. +.+.++. .. -+
T Consensus 1 ~~~~~~i~viG--~G~sG~salA~~L~~~G~~V~~sD~~~---~~-~-~~~L~~~gi~~~~g~---~~~~~~~--~d-~v 67 (809)
T PRK14573 1 MMKSLFYHFIG--IGGIGMSALAHILLDRGYSVSGSDLSE---GK-T-VEKLKAKGARFFLGH---QEEHVPE--DA-VV 67 (809)
T ss_pred CCCcceEEEEE--ecHHhHHHHHHHHHHCCCeEEEECCCC---Ch-H-HHHHHHCCCEEeCCC---CHHHcCC--CC-EE
Confidence 5554 588776 3311 122 334444 78998876532 11 1 223433332232221 3344432 22 36
Q ss_pred EEeccccCcccChhhHhhCCcEEeec
Q psy5259 77 ISTFSVGHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 77 i~~~~~G~d~id~~~~~~~gI~v~~~ 102 (294)
|.++++-.|+-.+..++++||++..-
T Consensus 68 V~SpgI~~~~p~~~~a~~~gi~v~~~ 93 (809)
T PRK14573 68 VYSSSISKDNVEYLSAKSRGNRLVHR 93 (809)
T ss_pred EECCCcCCCCHHHHHHHHCCCcEEeH
Confidence 66888888888888888999988665
No 232
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=26.32 E-value=71 Score=33.08 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=17.0
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.++++.++++|+|++++|..
T Consensus 55 ~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 55 EDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred CCHHHHhcCCCEEEECCCHH
Confidence 45788899999999999953
No 233
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=26.15 E-value=47 Score=30.13 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=27.4
Q ss_pred HHhccCCEEEEecCCCccccccccc--------ccc---cCcCCCHHHHHHHHHc
Q psy5259 223 TLCAQSDFIFVTCALTKDTEQLIGR--------KQF---RGGLLDQEALVEFLRD 266 (294)
Q Consensus 223 ell~~sDvV~l~~p~t~~T~~li~~--------~~~---RG~lvde~aL~~aL~~ 266 (294)
+.+++||+|+.++|-.++.+..+-+ +.+ --+-+.-..+.+.+..
T Consensus 79 ~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~ 133 (295)
T PLN02545 79 EELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQR 133 (295)
T ss_pred HHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCC
Confidence 5689999999999977775544322 211 1222366667666643
No 234
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.88 E-value=2.8e+02 Score=25.69 Aligned_cols=60 Identities=7% Similarity=0.040 Sum_probs=32.0
Q ss_pred CeEEEecCCCCCCchhHHHh-hccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRVSPAYDIL-EDMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l-~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.+|.+.+...-.-.+.-..| +++++|..|.... .+ ..+..+++|++++. ....++++++.
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--~~---l~e~~~~ADIVIsavg~~~~v~~~~ik 222 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--TD---AKALCRQADIVVAAVGRPRLIDADWLK 222 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--CC---HHHHHhcCCEEEEecCChhcccHhhcc
Confidence 45666663101113333444 4588998886542 22 34456788988865 23345555543
No 235
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=25.74 E-value=90 Score=30.75 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=12.3
Q ss_pred hccCCEEEEecCCCc
Q psy5259 225 CAQSDFIFVTCALTK 239 (294)
Q Consensus 225 l~~sDvV~l~~p~t~ 239 (294)
+.++|+|++++|..-
T Consensus 388 l~~~DiVInatP~g~ 402 (477)
T PRK09310 388 LHRIDIIINCLPPSV 402 (477)
T ss_pred cCCCCEEEEcCCCCC
Confidence 567999999999653
No 236
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.71 E-value=5.4e+02 Score=23.79 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=37.3
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++ -..+ .+....|. ++..|..+... |+ .+.+.++++|++++. ....++.+++.
T Consensus 159 k~vvVIGr-S~iVGkPla~lL~~~~atVtv~hs~----T~-~l~~~~~~ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 159 KKAVVVGR-SILVGKPLALMLLAANATVTIAHSR----TQ-DLASITREADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred CEEEEECC-CccchHHHHHHHHHCCCEEEEeCCC----CC-CHHHHHhhCCEEEEccCCcCccCHHHcC
Confidence 45677664 2222 34455554 47889888653 32 355677899999975 34567888886
No 237
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=25.44 E-value=83 Score=29.75 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=14.1
Q ss_pred CHHHH-hccCCEEEEecCCCc
Q psy5259 220 PLDTL-CAQSDFIFVTCALTK 239 (294)
Q Consensus 220 ~l~el-l~~sDvV~l~~p~t~ 239 (294)
+.+++ ..+||+|++++|-..
T Consensus 62 ~~~~~~~~~~DvvFlalPhg~ 82 (349)
T COG0002 62 DPEKIELDECDVVFLALPHGV 82 (349)
T ss_pred ChhhhhcccCCEEEEecCchh
Confidence 34444 456999999999543
No 238
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=24.84 E-value=1.4e+02 Score=28.02 Aligned_cols=113 Identities=10% Similarity=0.124 Sum_probs=58.6
Q ss_pred eEEEecCCCCCCchhHHHhh-----ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEe
Q psy5259 5 KLLLTRNDYPRVSPAYDILE-----DMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIST 79 (294)
Q Consensus 5 kvl~~~~~~~~~~~~~~~l~-----~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~ 79 (294)
+|++.+. - .+..+.+. ..++....+. .+.+++.+.++++|+++..........+++.+
T Consensus 25 ~v~va~r-~---~~~~~~~~~~~~~~~~~~~~~d~----~~~~~l~~~~~~~dvVin~~gp~~~~~v~~~~--------- 87 (386)
T PF03435_consen 25 EVTVADR-N---PEKAERLAEKLLGDRVEAVQVDV----NDPESLAELLRGCDVVINCAGPFFGEPVARAC--------- 87 (386)
T ss_dssp EEEEEES-S---HHHHHHHHT--TTTTEEEEE--T----TTHHHHHHHHTTSSEEEE-SSGGGHHHHHHHH---------
T ss_pred cEEEEEC-C---HHHHHHHHhhccccceeEEEEec----CCHHHHHHHHhcCCEEEECCccchhHHHHHHH---------
Confidence 5677774 2 23333332 2456666554 35677888899999999764444556666543
Q ss_pred ccccCcccChhh-----------HhhCCcEEeecCCCChhhhhhhhHHHHHHcc----CcceEEEeeccc
Q psy5259 80 FSVGHDHLHLDQ-----------IKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK----NLKVISTFSVGH 134 (294)
Q Consensus 80 ~~~G~d~id~~~-----------~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~----~Lk~i~~~~~G~ 134 (294)
...|++++|.+. ++++|+.+-..-|..+=-.-=++..++..+. +.+-+.....|.
T Consensus 88 i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~~~~~~v~~~~~~~g~~ 157 (386)
T PF03435_consen 88 IEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELDAEGDEVESVDIYVGGL 157 (386)
T ss_dssp HHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHHHTTHEEEEEEEEEEEE
T ss_pred HHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhhhhcccceEEEEEEccc
Confidence 345666666532 3467887777666654333333333333333 444444444333
No 239
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.29 E-value=48 Score=31.46 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=16.5
Q ss_pred HHHHhccCCEEEEecCCCcccccccccc
Q psy5259 221 LDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 221 l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
++++++++|+|+.+.- +.+++-++|+.
T Consensus 219 ~~~~~~~~D~Vv~~~d-~~~~r~~ln~~ 245 (376)
T PRK08762 219 VEALLQDVDVVVDGAD-NFPTRYLLNDA 245 (376)
T ss_pred HHHHHhCCCEEEECCC-CHHHHHHHHHH
Confidence 4567778887766654 44566555543
No 240
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=24.28 E-value=57 Score=30.65 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=36.7
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc----------cCcCCCHHHHHHHHHc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF----------RGGLLDQEALVEFLRD 266 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~----------RG~lvde~aL~~aL~~ 266 (294)
.+..++.++||+|++++|..+.++.+++ ..+ --+.++.+.+...|+.
T Consensus 73 aS~aEAAa~ADVVIL~LPd~aaV~eVl~-GLaa~L~~GaIVID~STIsP~t~~~~~e~ 129 (341)
T TIGR01724 73 SDDKEAAKHGEIHVLFTPFGKGTFSIAR-TIIEHVPENAVICNTCTVSPVVLYYSLEK 129 (341)
T ss_pred CCHHHHHhCCCEEEEecCCHHHHHHHHH-HHHhcCCCCCEEEECCCCCHHHHHHHHHH
Confidence 4688999999999999998887877753 122 4456788899888887
No 241
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.24 E-value=74 Score=29.68 Aligned_cols=60 Identities=10% Similarity=-0.008 Sum_probs=38.3
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc-----------cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-----------RGGLLDQEALVEFLRDKKIGGAGLDVMIP 279 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-----------RG~lvde~aL~~aL~~g~i~ga~LDV~~~ 279 (294)
.++++.++.||+|+-+.|-+.+.+.-+-++.- .-+-+.-.++.++++ ++-+.+++=.|.+
T Consensus 75 ~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~-~p~R~~g~HffnP 145 (321)
T PRK07066 75 ATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARAT-HPERCVVGHPFNP 145 (321)
T ss_pred CCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcC-CcccEEEEecCCc
Confidence 36889999999999999988876665543322 122345666777664 3333455655544
No 242
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.17 E-value=5.6e+02 Score=23.48 Aligned_cols=60 Identities=5% Similarity=-0.010 Sum_probs=37.9
Q ss_pred CeEEEecCCCCCCchhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRVSPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++..-.-.+....|. +++.|..|... |+ .+.+.++++|++++. ....++++++.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~----T~-nl~~~~~~ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIK----TK-DLSLYTRQADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----CC-CHHHHHhhCCEEEEcCCCcCccCHHHcC
Confidence 456776642111134555555 47899888763 32 356678899999975 34567888886
No 243
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=24.15 E-value=3.9e+02 Score=25.83 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=45.4
Q ss_pred CeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
++|++.+-.-.-.....+.|.+ +++|...+... . +. .+.+++..+.+..+ .+.+.++. .. -+|.++++
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~---~-~~-~~~l~~~gi~~~~~---~~~~~~~~--~d-~vv~spgi 76 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE---S-AV-TQRLLELGAIIFIG---HDAENIKD--AD-VVVYSSAI 76 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC---C-hH-HHHHHHCCCEEeCC---CCHHHCCC--CC-EEEECCCC
Confidence 4677776311111112445555 78888776532 1 11 22233322222221 13344432 22 36667777
Q ss_pred cCcccChhhHhhCCcEEeec
Q psy5259 83 GHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~ 102 (294)
.-|+-.+..++++||++..-
T Consensus 77 ~~~~~~~~~a~~~~i~i~~~ 96 (461)
T PRK00421 77 PDDNPELVAARELGIPVVRR 96 (461)
T ss_pred CCCCHHHHHHHHCCCcEEeH
Confidence 77777778888899888654
No 244
>PRK14851 hypothetical protein; Provisional
Probab=24.09 E-value=47 Score=34.35 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=11.8
Q ss_pred cCcCCCEEEEEcc
Q psy5259 200 IGLNGSTVGIVGT 212 (294)
Q Consensus 200 ~~l~gktvgIiG~ 212 (294)
..|++++|+|+|+
T Consensus 39 ~kL~~~~VlIvG~ 51 (679)
T PRK14851 39 ERLAEAKVAIPGM 51 (679)
T ss_pred HHHhcCeEEEECc
Confidence 6789999999999
No 245
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.00 E-value=5.6e+02 Score=23.42 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=37.5
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++ -..+ .+....|. ++..|..+... | ..+.+..+++|++++. ....++++++.
T Consensus 159 k~vvViGr-S~~VGkPla~lL~~~~AtVt~chs~----T-~~l~~~~~~ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 159 KEVVVIGR-SNIVGKPVAQLLLNENATVTICHSK----T-KNLKEVCKKADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred CEEEEECC-CccchHHHHHHHHHCCCEEEEeCCC----C-CCHHHHHhhCCEEEEcCCCcCccCHHHcC
Confidence 45666664 2222 34445554 47899888764 3 2356677899999975 34467888886
No 246
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.36 E-value=2.8e+02 Score=24.06 Aligned_cols=101 Identities=10% Similarity=0.067 Sum_probs=51.9
Q ss_pred CCCCHHHHhhc-CCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeec-ccccc
Q psy5259 60 QKVDKEALDES-GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSV-GHDHL 137 (294)
Q Consensus 60 ~~~~~~~l~~~-~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~-G~d~i 137 (294)
+-++.+..+++ .-.-++|.+++ +|.==++.++++||.+ .||+.+.+ |..-++-.-++-+|++-.... |.+++
T Consensus 62 TVl~~e~a~~ai~aGA~FivSP~--~~~~vi~~a~~~~i~~--iPG~~Tpt--Ei~~A~~~Ga~~vK~FPa~~~GG~~yi 135 (201)
T PRK06015 62 TILNAKQFEDAAKAGSRFIVSPG--TTQELLAAANDSDVPL--LPGAATPS--EVMALREEGYTVLKFFPAEQAGGAAFL 135 (201)
T ss_pred eCcCHHHHHHHHHcCCCEEECCC--CCHHHHHHHHHcCCCE--eCCCCCHH--HHHHHHHCCCCEEEECCchhhCCHHHH
Confidence 45555544433 23345555553 3333334567777755 67765543 222233333455666554344 35554
Q ss_pred ccchhhccCcEEEeeCCCchHHHHHHHHH
Q psy5259 138 HLDQIKSRGIRVGTVGPVSSDAVAEFNIG 166 (294)
Q Consensus 138 d~~~~~~~GI~v~~~~~~~~~~VAE~al~ 166 (294)
.--..--.+++++-++|.+.+.++||.-+
T Consensus 136 kal~~plp~~~l~ptGGV~~~n~~~~l~a 164 (201)
T PRK06015 136 KALSSPLAGTFFCPTGGISLKNARDYLSL 164 (201)
T ss_pred HHHHhhCCCCcEEecCCCCHHHHHHHHhC
Confidence 21111123577777777777777777654
No 247
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.32 E-value=5.9e+02 Score=23.42 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=37.8
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++ -..+ .+.-..|. ++..|..|... |+ .+.+.++.+|++++. ....++++++.
T Consensus 160 K~vvViGr-S~iVGkPla~lL~~~~ATVtichs~----T~-~L~~~~~~ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 160 KNVVIIGR-SNIVGKPLSALLLKENCSVTICHSK----TH-NLSSITSKADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred CEEEEECC-CCcchHHHHHHHHHCCCEEEEeCCC----CC-CHHHHHhhCCEEEEccCCCCccCHHHcC
Confidence 45677664 2222 34445554 57899888764 32 366678899999975 34467888886
No 248
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=23.28 E-value=46 Score=31.30 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=23.3
Q ss_pred CHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
+++++++++|+|+.|. +.+.|+.|++.+
T Consensus 68 ~~eeLl~~vDiVve~T---p~~~~~~na~~~ 95 (333)
T TIGR01546 68 TLEDLLEKVDIVVDAT---PGGIGAKNKPLY 95 (333)
T ss_pred CHHHHhhcCCEEEECC---CCCCChhhHHHH
Confidence 5899999999999875 577888887766
No 249
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=23.12 E-value=1e+02 Score=29.87 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=15.6
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
..+++.++.+|+|++..-..
T Consensus 380 ~~~e~al~~~D~vVi~tDH~ 399 (436)
T COG0677 380 AILEEALKDADAVVIATDHS 399 (436)
T ss_pred hhHHHHhccCCEEEEEeccH
Confidence 46888889999998876644
No 250
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=23.04 E-value=6.7e+02 Score=23.95 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=42.6
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHhhcCCCceEEEe
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALDESGENLKVIST 79 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~~~~~~lk~i~~ 79 (294)
.++++.+. -..+ .+.-..|. ++..|..+... |+ .+.+.++++|++++. ....++.+++. |.--+|
T Consensus 232 K~vvVIGR-S~iVGkPLa~LL~~~~ATVTicHs~----T~-nl~~~~r~ADIVIsAvGkp~~i~~d~vK---~GAvVI-- 300 (364)
T PLN02616 232 KRAVVIGR-SNIVGMPAALLLQREDATVSIVHSR----TK-NPEEITREADIIISAVGQPNMVRGSWIK---PGAVVI-- 300 (364)
T ss_pred CEEEEECC-CccccHHHHHHHHHCCCeEEEeCCC----CC-CHHHHHhhCCEEEEcCCCcCcCCHHHcC---CCCEEE--
Confidence 45666664 2212 34444444 47889888764 22 355677899999975 34467888886 333333
Q ss_pred ccccCccc
Q psy5259 80 FSVGHDHL 87 (294)
Q Consensus 80 ~~~G~d~i 87 (294)
-+|++++
T Consensus 301 -DVGIn~~ 307 (364)
T PLN02616 301 -DVGINPV 307 (364)
T ss_pred -ecccccc
Confidence 2466554
No 251
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=22.98 E-value=59 Score=26.58 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=15.4
Q ss_pred cCHHHHhccCCEEEEecCCCc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTK 239 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~ 239 (294)
.++++.++.||+|+++.|...
T Consensus 61 ~dl~~a~~~ad~IiiavPs~~ 81 (157)
T PF01210_consen 61 TDLEEALEDADIIIIAVPSQA 81 (157)
T ss_dssp SSHHHHHTT-SEEEE-S-GGG
T ss_pred cCHHHHhCcccEEEecccHHH
Confidence 579999999999999999543
No 252
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.92 E-value=5.9e+02 Score=23.32 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=36.9
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++ -..+ .+....|. +++.|..+... |+ .+.+.++.+|++++. ....++++++.
T Consensus 158 k~vvViGr-S~iVGkPla~lL~~~~AtVtichs~----T~-nl~~~~~~ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 158 KRALVVGR-SNIVGKPMAMMLLERHATVTIAHSR----TA-DLAGEVGRADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred CEEEEECC-CCcchHHHHHHHHHCCCEEEEeCCC----CC-CHHHHHhhCCEEEEecCCcCccCHHHcC
Confidence 45666664 2222 34455554 47888888664 32 355677899999975 34467788886
No 253
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=22.82 E-value=1e+02 Score=28.83 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=15.9
Q ss_pred cCHHHHhccCCEEEEecCC
Q psy5259 219 VPLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~ 237 (294)
.+.++++.+.|+|++|.|.
T Consensus 52 ~d~~e~l~~iDVViIctPs 70 (324)
T TIGR01921 52 ADDEKHLDDVDVLILCMGS 70 (324)
T ss_pred CCHHHhccCCCEEEEcCCC
Confidence 4677788899999999984
No 254
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=22.77 E-value=2.5e+02 Score=23.84 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=22.6
Q ss_pred eEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhc
Q psy5259 28 DIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDES 70 (294)
Q Consensus 28 ~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~ 70 (294)
+|++++.. .+...+.+.+ ++|.+.+.+. .++.+.|+..
T Consensus 4 evIVVEGK---~D~~~lk~~~-d~~~I~T~Gs-~i~~~~i~~i 41 (174)
T TIGR00334 4 EIIVVEGK---DDQARIKQAF-DVDVIETNGS-ALKDETINLI 41 (174)
T ss_pred eEEEEecc---hHHHHHHHhc-CceEEEECCC-ccCHHHHHHH
Confidence 45555553 3444554444 6788777754 5788777653
No 255
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=22.33 E-value=1.6e+02 Score=24.92 Aligned_cols=47 Identities=23% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCHHHHHHHccCCcEEEeCCC------CCCCHHHHhhcCCCceEEEeccccCc
Q psy5259 39 MPRDIFIEKLKGCSALLCNPH------QKVDKEALDESGENLKVISTFSVGHD 85 (294)
Q Consensus 39 ~~~e~~~~~l~~~d~~~~~~~------~~~~~~~l~~~~~~lk~i~~~~~G~d 85 (294)
..++.+.+-++.+|+++-+.. ..++.+.|.+.+|+|=++...+-|-+
T Consensus 9 ~gr~~l~~L~~~ADV~i~n~rpg~~~~lGl~~~~l~~~nP~LV~~~isgfG~~ 61 (191)
T PF02515_consen 9 EGRAALRRLLATADVVIENFRPGVLERLGLDYEALRAINPRLVYCSISGFGQD 61 (191)
T ss_dssp HHHHHHHHHHHT-SEEEEESSTTHHHHTT-SHHHHHHH-TT-EEEEEESS-SS
T ss_pred HHHHHHHHHHHhCCEEEECCchhhhHhcCCCHHHHHhhCCCCeEEEEEeecCC
Confidence 356677788899999997632 25788888888899988888777743
No 256
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=21.81 E-value=1e+02 Score=28.67 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=15.2
Q ss_pred CHHHHhccCCEEEEecCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t 238 (294)
+.+++++++|+|++++|-.
T Consensus 43 ~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 43 ARRELLNAADVAILCLPDD 61 (313)
T ss_pred CchhhhcCCCEEEECCCHH
Confidence 4456778899999999944
No 257
>PRK14982 acyl-ACP reductase; Provisional
Probab=21.62 E-value=89 Score=29.47 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=12.0
Q ss_pred CHHHHhccCCEEEEecC
Q psy5259 220 PLDTLCAQSDFIFVTCA 236 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p 236 (294)
++++.++++|+|+.+.-
T Consensus 208 ~l~~~l~~aDiVv~~ts 224 (340)
T PRK14982 208 SLEEALPEADIVVWVAS 224 (340)
T ss_pred hHHHHHccCCEEEECCc
Confidence 56678888997775543
No 258
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=21.52 E-value=99 Score=30.49 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=40.4
Q ss_pred ccCHHHHhc---cCCEEEEecCCCccccccccc-------ccc-----cCcCCCHHHHHHHHHcCCceEEEeeCCCCC
Q psy5259 218 LVPLDTLCA---QSDFIFVTCALTKDTEQLIGR-------KQF-----RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280 (294)
Q Consensus 218 ~~~l~ell~---~sDvV~l~~p~t~~T~~li~~-------~~~-----RG~lvde~aL~~aL~~g~i~ga~LDV~~~E 280 (294)
..+++++++ ++|+|++++|-.+.++.+++. ..+ .+.--|...+.+.+.+..+.....=|.-.+
T Consensus 54 ~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 54 YHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE 131 (470)
T ss_pred cCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence 357888886 589999999988887777632 111 222345666777777777764444344443
No 259
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=21.28 E-value=1.2e+02 Score=29.26 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=10.9
Q ss_pred ccCCEEEEecCCC
Q psy5259 226 AQSDFIFVTCALT 238 (294)
Q Consensus 226 ~~sDvV~l~~p~t 238 (294)
++||+|++++|..
T Consensus 74 ~~aDvvii~vptp 86 (415)
T PRK11064 74 EPADAFLIAVPTP 86 (415)
T ss_pred ccCCEEEEEcCCC
Confidence 3799999999953
No 260
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.11 E-value=6.6e+02 Score=23.19 Aligned_cols=59 Identities=8% Similarity=0.128 Sum_probs=36.2
Q ss_pred CeEEEecCCCCCC-chhHHHhhc-----cceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILED-----MFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~~-----~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.+|++.++ -..+ .+....|.+ +..|..+... |+ .+.+.++++|++++. ....++.+++.
T Consensus 162 k~vvViGr-S~iVGkPla~lL~~~~~~~~atVtv~hs~----T~-~l~~~~~~ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 162 AEVVVVGR-SNIVGKPIANMMTQKGPGANATVTIVHTR----SK-NLARHCQRADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred CEEEEECC-CCcccHHHHHHHHhcccCCCCEEEEecCC----Cc-CHHHHHhhCCEEEEecCCcCccCHHHcC
Confidence 45666664 2222 344445543 4788877653 22 355678899999974 34567888886
No 261
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.99 E-value=6.6e+02 Score=23.15 Aligned_cols=59 Identities=7% Similarity=0.089 Sum_probs=36.4
Q ss_pred CeEEEecCCCCCC-chhHHHhhc-----cceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILED-----MFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~~-----~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.++ -..+ .+....|.+ ++.|..|... |+ .+.+.++++|++++. ....++++++.
T Consensus 158 K~vvViGr-S~iVGkPla~lL~~~~~~~~aTVtvchs~----T~-nl~~~~~~ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 158 KKCVVLGR-SNIVGKPMAQLMMQKAYPGDCTVTVCHSR----SK-NLKKECLEADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred CEEEEECC-CccchHHHHHHHHcCCCCCCCEEEEecCC----CC-CHHHHHhhCCEEEEccCCcCccCHHHcC
Confidence 45666664 2212 344455543 4788888654 22 355677899999965 34567888886
No 262
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=20.85 E-value=34 Score=32.77 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred chhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------------------------------------
Q psy5259 175 FQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------------------ 212 (294)
Q Consensus 175 ~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------------------------ 212 (294)
+..|.|++.-..|..... ..|.+++|.|+|.
T Consensus 20 ~~ry~Rq~~l~~~g~~~q-------~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~d 92 (392)
T PRK07878 20 VARYSRHLIIPDVGVDGQ-------KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSD 92 (392)
T ss_pred HHHhhheechhhcCHHHH-------HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhc
Q ss_pred -------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 213 -------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 213 -------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
.......+..++++++|+|+.+.= +.+++.++|+
T Consensus 93 iG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~ 151 (392)
T PRK07878 93 VGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTD-NFATRYLVND 151 (392)
T ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCC-CHHHHHHHHH
No 263
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=20.71 E-value=84 Score=29.98 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=12.2
Q ss_pred CHHHHhccCCEEEE
Q psy5259 220 PLDTLCAQSDFIFV 233 (294)
Q Consensus 220 ~l~ell~~sDvV~l 233 (294)
.+.++.+.||+|+.
T Consensus 55 al~ela~~~DViT~ 68 (375)
T COG0026 55 ALRELAAKCDVITY 68 (375)
T ss_pred HHHHHHhhCCEEEE
Confidence 58899999999975
No 264
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.64 E-value=7.3e+02 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=20.6
Q ss_pred EEEeccccCcccChhhHhhCCcEEeec
Q psy5259 76 VISTFSVGHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 76 ~i~~~~~G~d~id~~~~~~~gI~v~~~ 102 (294)
+|.++++.-|+-.+..++++||++..-
T Consensus 71 vv~spgi~~~~p~~~~a~~~~i~v~~~ 97 (445)
T PRK04308 71 LALSPGISERQPDIEAFKQNGGRVLGD 97 (445)
T ss_pred EEECCCCCCCCHHHHHHHHcCCcEEEh
Confidence 566777777787778888899888655
No 265
>KOG2380|consensus
Probab=20.60 E-value=1.1e+02 Score=29.26 Aligned_cols=19 Identities=21% Similarity=0.585 Sum_probs=14.6
Q ss_pred ccCHHHHhcc-CCEEEEecC
Q psy5259 218 LVPLDTLCAQ-SDFIFVTCA 236 (294)
Q Consensus 218 ~~~l~ell~~-sDvV~l~~p 236 (294)
+..+.+++++ +|+|.+|..
T Consensus 98 ft~lhdlcerhpDvvLlcts 117 (480)
T KOG2380|consen 98 FTLLHDLCERHPDVVLLCTS 117 (480)
T ss_pred cccHHHHHhcCCCEEEEEeh
Confidence 4457777766 999999876
No 266
>PRK11579 putative oxidoreductase; Provisional
Probab=20.46 E-value=1.3e+02 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=24.2
Q ss_pred ccCHHHHhcc--CCEEEEecCCCc----------ccccccccccc
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
+.+++++++. -|+|+++.|... .-+|++.++-+
T Consensus 53 ~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPl 97 (346)
T PRK11579 53 VSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPF 97 (346)
T ss_pred eCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCC
Confidence 5689999974 699999999443 25666666655
No 267
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=20.43 E-value=1.2e+02 Score=28.59 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=18.6
Q ss_pred cccCHHHHhccCCEEEEecCC
Q psy5259 217 QLVPLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 217 ~~~~l~ell~~sDvV~l~~p~ 237 (294)
.+.+++++++..|+++++.|.
T Consensus 52 ~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCC
Confidence 467899999999999999985
No 268
>KOG2555|consensus
Probab=20.31 E-value=1.3e+02 Score=29.22 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=56.8
Q ss_pred EEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHhhcCCCceEEEecccc
Q psy5259 6 LLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALDESGENLKVISTFSVG 83 (294)
Q Consensus 6 vl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~~~~~~lk~i~~~~~G 83 (294)
.++++. +.. .+.+.+++..||-+.- +.|+++-.+.++....+... ...++...+.+..-..+++|+.++-.
T Consensus 489 ~~v~g~-~~e-~~~~~~~~~~fe~~p~-----~~t~~e~~ewl~~l~~v~l~SDAFFPF~Dnv~ra~qsGv~yiaaP~GS 561 (588)
T KOG2555|consen 489 LYVTGT-VGE-DPELSQWESKFEEVPE-----PLTKEERKEWLEKLKGVSLSSDAFFPFPDNVYRAVQSGVKYIAAPSGS 561 (588)
T ss_pred hhcccc-ccc-Ccchhhhhhhhhhccc-----ccChHHHHHHHHHhcCceecccccccCchHHHHHHhcCCeEEecCCCc
Confidence 345553 321 3555666666765432 45666555555443322222 24567777777666789999988766
Q ss_pred C-cccChhhHhhCCcEEeec
Q psy5259 84 H-DHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 84 ~-d~id~~~~~~~gI~v~~~ 102 (294)
+ |..-.+.|.+.||.+..+
T Consensus 562 v~D~~v~~a~d~~~iv~~~t 581 (588)
T KOG2555|consen 562 VMDKVVIDACDEFGIVLAET 581 (588)
T ss_pred chhHHHHHHHHhhCeEEEec
Confidence 6 888889999999988666
Done!