Query psy5259
Match_columns 294
No_of_seqs 148 out of 1474
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 21:49:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g2n_A D-isomer specific 2-hyd 100.0 2.5E-51 8.7E-56 381.8 24.9 237 1-294 26-306 (345)
2 4e5n_A Thermostable phosphite 100.0 7.4E-49 2.5E-53 363.9 20.9 234 3-294 2-287 (330)
3 3kb6_A D-lactate dehydrogenase 100.0 4.5E-49 1.5E-53 365.8 16.3 228 4-294 1-289 (334)
4 4dgs_A Dehydrogenase; structur 100.0 4.7E-49 1.6E-53 365.9 16.3 233 1-294 28-301 (340)
5 3k5p_A D-3-phosphoglycerate de 100.0 5.2E-47 1.8E-51 359.4 22.9 230 3-294 15-292 (416)
6 3gg9_A D-3-phosphoglycerate de 100.0 3.6E-46 1.2E-50 348.3 22.9 235 1-294 1-295 (352)
7 3hg7_A D-isomer specific 2-hyd 100.0 1.9E-46 6.4E-51 346.3 18.7 226 1-294 3-274 (324)
8 3jtm_A Formate dehydrogenase, 100.0 1.9E-46 6.5E-51 349.9 18.7 221 18-294 31-300 (351)
9 1sc6_A PGDH, D-3-phosphoglycer 100.0 8.6E-46 2.9E-50 351.6 22.7 230 3-294 4-281 (404)
10 1wwk_A Phosphoglycerate dehydr 100.0 2.5E-45 8.7E-50 337.3 22.7 231 1-294 1-276 (307)
11 3evt_A Phosphoglycerate dehydr 100.0 9.3E-46 3.2E-50 342.0 16.5 225 3-294 1-271 (324)
12 2pi1_A D-lactate dehydrogenase 100.0 3.5E-46 1.2E-50 346.4 13.7 231 4-294 1-289 (334)
13 2g76_A 3-PGDH, D-3-phosphoglyc 100.0 1.4E-44 4.8E-49 335.7 22.6 229 2-294 25-298 (335)
14 2yq5_A D-isomer specific 2-hyd 100.0 4.1E-45 1.4E-49 339.8 16.4 233 3-294 1-293 (343)
15 4hy3_A Phosphoglycerate oxidor 100.0 7.2E-45 2.5E-49 340.3 17.2 232 2-294 26-309 (365)
16 2cuk_A Glycerate dehydrogenase 100.0 1.3E-43 4.5E-48 326.4 24.1 232 4-294 1-272 (311)
17 1gdh_A D-glycerate dehydrogena 100.0 2.6E-43 9E-48 325.6 25.0 233 4-294 2-281 (320)
18 2gcg_A Glyoxylate reductase/hy 100.0 1E-42 3.4E-47 323.1 24.6 238 1-294 6-290 (330)
19 2ekl_A D-3-phosphoglycerate de 100.0 5.7E-43 2E-47 322.4 21.8 226 3-294 5-278 (313)
20 3ba1_A HPPR, hydroxyphenylpyru 100.0 7.1E-43 2.4E-47 324.0 22.0 232 1-294 21-294 (333)
21 2j6i_A Formate dehydrogenase; 100.0 1.6E-43 5.4E-48 332.2 16.8 233 3-294 17-306 (364)
22 1j4a_A D-LDH, D-lactate dehydr 100.0 2.7E-43 9.2E-48 327.2 17.6 230 4-294 2-292 (333)
23 2nac_A NAD-dependent formate d 100.0 7.6E-43 2.6E-47 329.6 20.5 218 21-294 61-327 (393)
24 1xdw_A NAD+-dependent (R)-2-hy 100.0 1.3E-42 4.6E-47 322.2 19.6 232 4-294 1-292 (331)
25 1dxy_A D-2-hydroxyisocaproate 100.0 1.2E-42 4.2E-47 322.7 16.8 231 4-294 1-290 (333)
26 3pp8_A Glyoxylate/hydroxypyruv 100.0 2E-42 6.8E-47 318.7 16.6 222 2-294 2-273 (315)
27 1mx3_A CTBP1, C-terminal bindi 100.0 7.3E-42 2.5E-46 318.8 19.5 236 1-294 19-304 (347)
28 2w2k_A D-mandelate dehydrogena 100.0 5.7E-42 1.9E-46 320.1 18.5 237 1-294 1-299 (348)
29 2dbq_A Glyoxylate reductase; D 100.0 1.2E-41 4.1E-46 316.3 20.2 234 3-294 2-283 (334)
30 1ygy_A PGDH, D-3-phosphoglycer 100.0 1.1E-40 3.7E-45 327.1 23.3 230 1-294 2-275 (529)
31 2d0i_A Dehydrogenase; structur 100.0 7.9E-41 2.7E-45 310.6 20.2 232 3-294 2-279 (333)
32 3oet_A Erythronate-4-phosphate 100.0 2.5E-39 8.6E-44 303.6 18.9 204 3-292 3-251 (381)
33 1qp8_A Formate dehydrogenase; 100.0 7.2E-39 2.5E-43 293.7 15.5 213 4-294 1-255 (303)
34 3gvx_A Glycerate dehydrogenase 100.0 5.5E-37 1.9E-41 279.2 15.8 180 46-294 30-250 (290)
35 2o4c_A Erythronate-4-phosphate 100.0 1.4E-36 4.8E-41 285.5 18.5 204 4-294 1-249 (380)
36 1v8b_A Adenosylhomocysteinase; 99.8 1.3E-19 4.4E-24 174.4 3.9 147 122-294 192-389 (479)
37 3d64_A Adenosylhomocysteinase; 99.7 7.8E-20 2.7E-24 176.5 -4.4 146 122-294 212-406 (494)
38 3d4o_A Dipicolinate synthase s 99.7 2.9E-17 9.9E-22 149.3 8.0 170 1-250 3-231 (293)
39 2rir_A Dipicolinate synthase, 99.4 3.2E-14 1.1E-18 129.5 4.0 97 1-102 5-125 (300)
40 2vhw_A Alanine dehydrogenase; 99.0 1.4E-09 4.6E-14 102.1 11.0 214 14-294 17-293 (377)
41 3ce6_A Adenosylhomocysteinase; 99.0 3.1E-11 1.1E-15 116.8 -2.6 132 127-281 215-393 (494)
42 2eez_A Alanine dehydrogenase; 98.5 6.3E-07 2.2E-11 83.6 10.7 216 14-294 17-291 (369)
43 1x13_A NAD(P) transhydrogenase 98.4 1.9E-07 6.4E-12 88.2 6.4 91 15-112 25-127 (401)
44 1gtm_A Glutamate dehydrogenase 98.4 2.3E-09 7.9E-14 101.7 -6.7 86 200-294 207-335 (419)
45 1l7d_A Nicotinamide nucleotide 98.3 9.2E-07 3.2E-11 82.9 6.5 88 14-102 17-122 (384)
46 3h9u_A Adenosylhomocysteinase; 98.2 2.2E-06 7.5E-11 81.3 8.5 112 129-263 154-312 (436)
47 1gpj_A Glutamyl-tRNA reductase 98.0 1.9E-06 6.4E-11 81.4 1.9 155 122-294 80-281 (404)
48 3n58_A Adenosylhomocysteinase; 97.7 2.8E-05 9.6E-10 73.8 5.3 59 200-262 243-347 (464)
49 3gvp_A Adenosylhomocysteinase 97.4 0.00016 5.6E-09 68.3 5.8 116 123-261 156-319 (435)
50 3jtm_A Formate dehydrogenase, 97.2 0.0012 4.3E-08 60.9 9.1 49 120-172 83-131 (351)
51 3d4o_A Dipicolinate synthase s 97.1 0.0002 6.9E-09 64.3 3.0 87 42-166 88-176 (293)
52 2pi1_A D-lactate dehydrogenase 96.9 0.00096 3.3E-08 61.2 5.9 49 120-172 61-109 (334)
53 4g2n_A D-isomer specific 2-hyd 96.9 0.002 6.8E-08 59.4 7.9 49 120-172 90-139 (345)
54 4e5n_A Thermostable phosphite 96.9 0.0023 7.8E-08 58.6 8.2 49 120-172 64-112 (330)
55 1c1d_A L-phenylalanine dehydro 96.8 0.0014 4.9E-08 60.5 5.9 65 201-271 172-281 (355)
56 3evt_A Phosphoglycerate dehydr 96.8 0.0006 2.1E-08 62.3 3.0 49 120-172 58-106 (324)
57 1gdh_A D-glycerate dehydrogena 96.7 0.0037 1.3E-07 56.9 7.7 49 120-172 63-112 (320)
58 2j6i_A Formate dehydrogenase; 96.7 0.0033 1.1E-07 58.3 7.4 50 119-172 80-131 (364)
59 3kb6_A D-lactate dehydrogenase 96.6 0.0038 1.3E-07 57.2 7.4 49 120-172 61-109 (334)
60 2dbq_A Glyoxylate reductase; D 96.6 0.0047 1.6E-07 56.5 7.7 49 120-172 64-112 (334)
61 4dgs_A Dehydrogenase; structur 96.4 0.0034 1.2E-07 57.7 5.5 49 120-172 90-138 (340)
62 2nac_A NAD-dependent formate d 96.2 0.0082 2.8E-07 56.2 7.2 50 119-172 109-158 (393)
63 2gcg_A Glyoxylate reductase/hy 96.2 0.0099 3.4E-07 54.2 7.3 49 120-172 72-121 (330)
64 2yq5_A D-isomer specific 2-hyd 96.1 0.0045 1.5E-07 57.0 4.6 14 122-135 69-82 (343)
65 3k5p_A D-3-phosphoglycerate de 96.0 0.0065 2.2E-07 57.3 5.4 49 120-172 77-125 (416)
66 2cuk_A Glycerate dehydrogenase 96.0 0.009 3.1E-07 54.1 6.1 49 120-172 62-110 (311)
67 3ba1_A HPPR, hydroxyphenylpyru 95.9 0.0088 3E-07 54.7 5.7 49 120-172 84-132 (333)
68 1j4a_A D-LDH, D-lactate dehydr 95.9 0.0097 3.3E-07 54.4 5.9 49 120-172 65-115 (333)
69 1wwk_A Phosphoglycerate dehydr 95.9 0.011 3.9E-07 53.3 6.2 49 120-172 63-111 (307)
70 2g76_A 3-PGDH, D-3-phosphoglyc 95.9 0.0079 2.7E-07 55.1 5.2 49 120-172 86-134 (335)
71 1xdw_A NAD+-dependent (R)-2-hy 95.8 0.024 8.2E-07 51.7 7.9 49 120-172 64-114 (331)
72 1sc6_A PGDH, D-3-phosphoglycer 95.7 0.013 4.3E-07 55.1 5.9 49 120-172 66-114 (404)
73 1dxy_A D-2-hydroxyisocaproate 95.6 0.017 5.9E-07 52.7 6.1 49 120-172 63-113 (333)
74 2d0i_A Dehydrogenase; structur 95.5 0.0092 3.1E-07 54.5 4.0 49 120-172 61-109 (333)
75 3gg9_A D-3-phosphoglycerate de 95.5 0.022 7.4E-07 52.5 6.5 48 120-172 68-119 (352)
76 2ekl_A D-3-phosphoglycerate de 95.5 0.013 4.5E-07 53.0 4.9 49 120-172 65-113 (313)
77 2w2k_A D-mandelate dehydrogena 95.0 0.019 6.4E-07 52.8 4.6 49 120-172 76-125 (348)
78 4hy3_A Phosphoglycerate oxidor 95.0 0.014 4.8E-07 54.1 3.7 49 120-172 93-142 (365)
79 3hg7_A D-isomer specific 2-hyd 94.7 0.017 5.9E-07 52.6 3.4 39 92-139 45-83 (324)
80 2d5c_A AROE, shikimate 5-dehyd 94.5 0.012 4.2E-07 51.5 1.8 48 39-89 38-89 (263)
81 1mx3_A CTBP1, C-terminal bindi 94.3 0.019 6.5E-07 52.8 2.6 49 120-172 82-130 (347)
82 3oet_A Erythronate-4-phosphate 94.0 0.043 1.5E-06 51.1 4.4 29 121-149 59-87 (381)
83 1ygy_A PGDH, D-3-phosphoglycer 93.8 0.047 1.6E-06 52.9 4.6 49 120-172 63-111 (529)
84 1v8b_A Adenosylhomocysteinase; 93.5 0.012 4.2E-07 56.4 -0.3 85 72-167 192-279 (479)
85 3gvx_A Glycerate dehydrogenase 93.3 0.092 3.2E-06 47.0 5.3 48 120-172 46-93 (290)
86 3d64_A Adenosylhomocysteinase; 93.3 0.013 4.3E-07 56.5 -0.4 86 72-167 212-299 (494)
87 1leh_A Leucine dehydrogenase; 93.1 0.086 2.9E-06 48.7 4.9 63 201-269 170-278 (364)
88 2o4c_A Erythronate-4-phosphate 92.2 0.061 2.1E-06 50.0 2.4 29 121-149 56-84 (380)
89 4dll_A 2-hydroxy-3-oxopropiona 91.9 0.063 2.1E-06 48.4 2.2 53 219-271 79-145 (320)
90 3l6d_A Putative oxidoreductase 91.5 0.13 4.3E-06 46.0 3.7 52 219-270 57-121 (306)
91 3dtt_A NADP oxidoreductase; st 91.3 0.11 3.6E-06 45.0 2.9 20 220-239 83-102 (245)
92 1ccw_A Protein (glutamate muta 91.0 2.3 7.8E-05 33.2 10.3 56 1-59 1-63 (137)
93 3re1_A Uroporphyrinogen-III sy 90.8 0.14 4.8E-06 44.9 3.3 152 1-156 12-174 (269)
94 1qp8_A Formate dehydrogenase; 90.6 0.11 3.8E-06 46.7 2.4 24 116-139 43-66 (303)
95 3doj_A AT3G25530, dehydrogenas 90.5 0.13 4.3E-06 46.1 2.7 52 219-270 69-135 (310)
96 3fr7_A Putative ketol-acid red 89.1 0.17 5.8E-06 48.6 2.5 39 219-270 113-151 (525)
97 1np3_A Ketol-acid reductoisome 87.7 0.2 6.8E-06 45.5 1.9 46 200-246 12-90 (338)
98 2pv7_A T-protein [includes: ch 87.1 0.57 1.9E-05 41.5 4.5 59 177-246 4-83 (298)
99 3ulk_A Ketol-acid reductoisome 87.0 0.42 1.4E-05 45.3 3.7 38 200-237 33-108 (491)
100 2hk9_A Shikimate dehydrogenase 86.8 0.58 2E-05 41.0 4.4 31 220-250 179-211 (275)
101 2rir_A Dipicolinate synthase, 86.1 0.33 1.1E-05 43.1 2.4 103 120-250 95-233 (300)
102 4gbj_A 6-phosphogluconate dehy 84.7 0.3 1E-05 43.5 1.4 30 219-248 53-82 (297)
103 4e21_A 6-phosphogluconate dehy 84.3 0.63 2.1E-05 42.7 3.4 60 219-279 70-144 (358)
104 3qsg_A NAD-binding phosphogluc 83.7 0.79 2.7E-05 40.9 3.8 60 179-241 2-97 (312)
105 3pp8_A Glyoxylate/hydroxypyruv 83.1 0.3 1E-05 44.1 0.7 50 120-172 57-110 (315)
106 3obb_A Probable 3-hydroxyisobu 82.9 0.53 1.8E-05 42.0 2.3 28 219-246 51-78 (300)
107 3p2y_A Alanine dehydrogenase/p 82.6 0.86 2.9E-05 42.2 3.6 30 220-250 258-289 (381)
108 4es6_A Uroporphyrinogen-III sy 82.5 0.65 2.2E-05 40.0 2.6 150 3-155 6-165 (254)
109 3ond_A Adenosylhomocysteinase; 82.4 1.3 4.6E-05 42.3 4.9 98 130-250 209-339 (488)
110 3p2o_A Bifunctional protein fo 81.9 1.6 5.3E-05 38.8 4.9 47 200-250 156-222 (285)
111 3oj0_A Glutr, glutamyl-tRNA re 81.4 1.2 4.2E-05 34.5 3.7 29 219-250 72-100 (144)
112 3mw8_A Uroporphyrinogen-III sy 81.3 2.7 9.2E-05 35.6 6.1 143 4-154 2-151 (240)
113 4a5o_A Bifunctional protein fo 81.1 1.8 6.1E-05 38.5 4.9 47 200-250 157-223 (286)
114 3qha_A Putative oxidoreductase 80.8 0.46 1.6E-05 42.0 1.1 52 219-271 63-126 (296)
115 3l07_A Bifunctional protein fo 80.8 1.9 6.5E-05 38.3 5.0 47 200-250 157-223 (285)
116 3pdu_A 3-hydroxyisobutyrate de 80.8 0.53 1.8E-05 41.3 1.4 52 219-270 49-115 (287)
117 1a4i_A Methylenetetrahydrofola 79.8 2.2 7.6E-05 38.1 5.2 47 200-250 161-227 (301)
118 1b0a_A Protein (fold bifunctio 79.8 1.9 6.6E-05 38.3 4.7 47 200-250 155-221 (288)
119 3g0o_A 3-hydroxyisobutyrate de 79.1 0.72 2.4E-05 40.8 1.7 52 219-270 56-122 (303)
120 2vhw_A Alanine dehydrogenase; 78.6 2.1 7.1E-05 39.3 4.8 120 26-167 67-190 (377)
121 3pef_A 6-phosphogluconate dehy 77.5 0.91 3.1E-05 39.7 1.9 52 219-270 49-115 (287)
122 3ngx_A Bifunctional protein fo 77.5 2.4 8.1E-05 37.5 4.6 45 202-250 148-212 (276)
123 2yjz_A Metalloreductase steap4 78.4 0.51 1.7E-05 39.5 0.0 26 219-245 65-90 (201)
124 4a26_A Putative C-1-tetrahydro 75.8 2.5 8.4E-05 37.8 4.2 47 200-250 161-229 (300)
125 2h78_A Hibadh, 3-hydroxyisobut 74.9 1.3 4.4E-05 39.0 2.2 52 219-270 51-117 (302)
126 2i99_A MU-crystallin homolog; 74.2 3.7 0.00013 36.5 5.0 29 219-250 188-216 (312)
127 2c2x_A Methylenetetrahydrofola 72.8 4.7 0.00016 35.7 5.2 47 200-250 154-222 (281)
128 2vns_A Metalloreductase steap3 70.9 3.1 0.00011 34.7 3.6 26 219-245 75-100 (215)
129 4dio_A NAD(P) transhydrogenase 69.7 3.1 0.00011 38.8 3.6 30 220-250 268-299 (405)
130 3ggo_A Prephenate dehydrogenas 69.5 3.5 0.00012 36.7 3.8 21 219-239 85-106 (314)
131 4b4u_A Bifunctional protein fo 68.8 5.9 0.0002 35.4 5.0 47 200-250 175-241 (303)
132 2gf2_A Hibadh, 3-hydroxyisobut 68.7 1.8 6.1E-05 37.7 1.6 28 219-246 48-75 (296)
133 1vpd_A Tartronate semialdehyde 66.5 3.6 0.00012 35.8 3.1 51 219-269 53-118 (299)
134 1pjc_A Protein (L-alanine dehy 66.3 50 0.0017 29.6 11.0 18 220-237 223-240 (361)
135 4ezb_A Uncharacterized conserv 66.2 4.2 0.00014 36.2 3.5 61 220-280 80-151 (317)
136 1jr2_A Uroporphyrinogen-III sy 63.1 5 0.00017 35.0 3.4 148 3-157 21-191 (286)
137 2ahr_A Putative pyrroline carb 63.0 3.8 0.00013 34.9 2.6 48 219-267 52-105 (259)
138 2raf_A Putative dinucleotide-b 62.6 2.4 8.1E-05 35.4 1.1 45 200-245 15-74 (209)
139 2g5c_A Prephenate dehydrogenas 61.0 6.5 0.00022 33.9 3.7 48 219-267 53-113 (281)
140 2uyy_A N-PAC protein; long-cha 60.8 5.2 0.00018 35.2 3.1 51 219-269 78-143 (316)
141 4gwg_A 6-phosphogluconate dehy 60.7 5.9 0.0002 37.8 3.6 59 219-277 57-130 (484)
142 3tri_A Pyrroline-5-carboxylate 60.3 7.4 0.00025 33.9 4.0 19 219-237 55-73 (280)
143 2xij_A Methylmalonyl-COA mutas 60.2 1.1E+02 0.0037 30.8 12.8 120 3-170 604-731 (762)
144 3don_A Shikimate dehydrogenase 59.7 7.5 0.00026 34.1 3.9 19 220-238 168-186 (277)
145 3hdj_A Probable ornithine cycl 59.3 8.5 0.00029 34.3 4.3 28 220-250 176-203 (313)
146 4hkt_A Inositol 2-dehydrogenas 58.8 6.8 0.00023 34.7 3.5 26 214-239 48-75 (331)
147 1zud_1 Adenylyltransferase THI 58.7 2 6.9E-05 37.1 0.0 28 221-249 112-139 (251)
148 3d1l_A Putative NADP oxidoredu 58.6 5.2 0.00018 34.2 2.7 20 219-238 60-79 (266)
149 3cky_A 2-hydroxymethyl glutara 58.6 4.2 0.00014 35.4 2.1 49 219-267 52-115 (301)
150 1edz_A 5,10-methylenetetrahydr 57.2 8.3 0.00028 34.7 3.8 29 219-250 237-265 (320)
151 1x7d_A Ornithine cyclodeaminas 56.6 9.6 0.00033 34.5 4.2 30 219-249 186-215 (350)
152 3l5o_A Uncharacterized protein 55.1 11 0.00036 33.2 4.0 16 254-269 241-256 (270)
153 3b1f_A Putative prephenate deh 54.5 7.3 0.00025 33.7 2.9 21 219-239 58-78 (290)
154 1jw9_B Molybdopterin biosynthe 53.2 2.4 8.2E-05 36.5 -0.5 28 221-249 115-142 (249)
155 3evn_A Oxidoreductase, GFO/IDH 53.1 12 0.00043 33.0 4.3 21 218-238 56-78 (329)
156 1dlj_A UDP-glucose dehydrogena 52.9 12 0.00041 34.4 4.3 12 201-212 306-317 (402)
157 1i36_A Conserved hypothetical 52.9 6.8 0.00023 33.3 2.4 24 219-242 48-71 (264)
158 4a7p_A UDP-glucose dehydrogena 52.7 17 0.00057 34.2 5.3 19 220-238 381-399 (446)
159 3d8t_A Uroporphyrinogen-III sy 51.8 7.1 0.00024 34.0 2.4 143 3-158 33-191 (286)
160 3uuw_A Putative oxidoreductase 51.2 13 0.00044 32.5 4.0 21 218-238 57-77 (308)
161 1req_A Methylmalonyl-COA mutas 50.0 1.9E+02 0.0066 28.8 12.6 119 3-168 596-721 (727)
162 3ktd_A Prephenate dehydrogenas 49.5 8.9 0.00031 34.7 2.7 26 219-245 56-85 (341)
163 3c24_A Putative oxidoreductase 49.2 11 0.00037 32.6 3.2 26 219-245 59-84 (286)
164 3jte_A Response regulator rece 48.3 76 0.0026 23.1 7.8 106 1-114 1-117 (143)
165 3g79_A NDP-N-acetyl-D-galactos 47.7 17 0.0006 34.4 4.6 20 219-238 406-425 (478)
166 2h1q_A Hypothetical protein; Z 47.6 17 0.00059 31.8 4.2 35 200-234 137-193 (270)
167 3ezy_A Dehydrogenase; structur 47.5 11 0.00039 33.5 3.1 21 218-238 53-75 (344)
168 3gt0_A Pyrroline-5-carboxylate 47.1 10 0.00034 32.1 2.6 19 219-237 55-73 (247)
169 3euw_A MYO-inositol dehydrogen 46.5 16 0.00056 32.3 4.0 22 218-239 54-77 (344)
170 1wcw_A Uroporphyrinogen III sy 46.2 8.5 0.00029 32.8 2.0 143 3-158 8-166 (261)
171 1omo_A Alanine dehydrogenase; 46.0 20 0.00067 31.9 4.4 29 218-250 179-207 (322)
172 3e9m_A Oxidoreductase, GFO/IDH 45.6 13 0.00046 32.8 3.3 23 217-239 55-79 (330)
173 2zyd_A 6-phosphogluconate dehy 45.5 6.4 0.00022 37.3 1.2 52 219-270 67-133 (480)
174 1gpj_A Glutamyl-tRNA reductase 44.5 0.69 2.4E-05 43.0 -5.7 94 72-166 80-188 (404)
175 2yxb_A Coenzyme B12-dependent 42.8 1.2E+02 0.0041 23.8 10.7 53 3-58 18-77 (161)
176 2f1k_A Prephenate dehydrogenas 42.6 18 0.00062 30.8 3.6 25 219-245 50-74 (279)
177 3vtf_A UDP-glucose 6-dehydroge 42.3 18 0.0006 34.1 3.6 19 220-238 393-411 (444)
178 3pid_A UDP-glucose 6-dehydroge 41.9 14 0.00048 34.6 2.9 18 219-236 387-404 (432)
179 4had_A Probable oxidoreductase 40.9 17 0.00057 32.3 3.1 33 218-250 75-119 (350)
180 3l07_A Bifunctional protein fo 40.2 1.7E+02 0.0057 25.7 9.4 59 4-68 162-224 (285)
181 2ho3_A Oxidoreductase, GFO/IDH 40.1 24 0.00081 31.0 4.0 21 218-238 52-73 (325)
182 4e12_A Diketoreductase; oxidor 39.7 28 0.00097 30.0 4.4 59 219-278 77-146 (283)
183 2gkg_A Response regulator homo 39.5 77 0.0026 22.2 6.3 102 1-111 3-116 (127)
184 3ojo_A CAP5O; rossmann fold, c 39.4 28 0.00096 32.5 4.5 20 219-238 366-385 (431)
185 2c2x_A Methylenetetrahydrofola 39.0 1.9E+02 0.0065 25.2 9.6 60 3-68 158-223 (281)
186 1xrs_B D-lysine 5,6-aminomutas 38.7 1.9E+02 0.0065 24.9 10.6 30 26-58 157-188 (262)
187 2cvz_A Dehydrogenase, 3-hydrox 37.9 6.7 0.00023 33.7 -0.0 47 221-267 49-107 (289)
188 3db2_A Putative NADPH-dependen 37.0 30 0.001 30.7 4.2 22 218-239 55-78 (354)
189 3abi_A Putative uncharacterize 36.6 72 0.0025 28.5 6.7 93 3-107 16-136 (365)
190 2egg_A AROE, shikimate 5-dehyd 36.0 28 0.00097 30.5 3.8 20 220-239 197-216 (297)
191 3e18_A Oxidoreductase; dehydro 35.7 32 0.0011 30.8 4.2 22 218-239 54-77 (359)
192 3kp1_A D-ornithine aminomutase 35.7 3.4E+02 0.012 26.9 11.8 111 3-120 602-735 (763)
193 3fij_A LIN1909 protein; 11172J 35.3 60 0.0021 27.5 5.7 63 2-69 3-80 (254)
194 2z2v_A Hypothetical protein PH 35.2 21 0.00073 32.4 2.9 20 219-238 69-88 (365)
195 2dc1_A L-aspartate dehydrogena 34.9 35 0.0012 28.5 4.1 21 218-238 40-61 (236)
196 3k6j_A Protein F01G10.3, confi 34.9 24 0.00081 33.3 3.2 58 220-279 124-192 (460)
197 3u62_A Shikimate dehydrogenase 34.9 22 0.00076 30.5 2.8 20 219-238 158-177 (253)
198 3jyo_A Quinate/shikimate dehyd 34.8 70 0.0024 27.8 6.1 19 220-238 187-205 (283)
199 3m2t_A Probable dehydrogenase; 34.7 29 0.00099 31.1 3.7 20 218-237 57-78 (359)
200 3ce6_A Adenosylhomocysteinase; 32.7 6.3 0.00022 37.7 -1.2 41 72-115 209-250 (494)
201 3npg_A Uncharacterized DUF364 32.6 33 0.0011 29.5 3.6 16 254-269 220-235 (249)
202 3ohs_X Trans-1,2-dihydrobenzen 31.8 36 0.0012 29.9 3.8 21 218-238 55-77 (334)
203 3mz0_A Inositol 2-dehydrogenas 31.3 28 0.00096 30.8 3.0 22 218-239 55-78 (344)
204 3gg2_A Sugar dehydrogenase, UD 31.2 34 0.0012 32.0 3.6 13 200-212 314-326 (450)
205 4gmf_A Yersiniabactin biosynth 30.8 30 0.001 31.5 3.1 26 213-238 51-77 (372)
206 3u3x_A Oxidoreductase; structu 30.8 42 0.0014 30.0 4.1 33 218-250 77-121 (361)
207 3i42_A Response regulator rece 30.3 34 0.0012 24.5 2.9 50 1-57 1-54 (127)
208 1yb4_A Tartronic semialdehyde 30.0 22 0.00074 30.5 2.0 50 218-267 49-113 (295)
209 1pgj_A 6PGDH, 6-PGDH, 6-phosph 30.0 26 0.0009 33.0 2.7 53 219-271 57-124 (478)
210 3tri_A Pyrroline-5-carboxylate 30.0 68 0.0023 27.5 5.2 24 47-70 60-83 (280)
211 2p4q_A 6-phosphogluconate dehy 29.8 20 0.00067 34.1 1.7 52 219-270 63-129 (497)
212 4fb5_A Probable oxidoreductase 29.7 32 0.0011 30.5 3.2 33 218-250 83-127 (393)
213 2hmt_A YUAA protein; RCK, KTN, 29.2 32 0.0011 25.5 2.6 18 221-238 63-81 (144)
214 4hv4_A UDP-N-acetylmuramate--L 29.0 2.1E+02 0.007 26.7 8.8 84 4-102 23-111 (494)
215 1h6d_A Precursor form of gluco 28.9 40 0.0014 31.1 3.7 21 218-238 139-161 (433)
216 3e82_A Putative oxidoreductase 28.7 39 0.0013 30.2 3.5 33 218-250 56-100 (364)
217 1l7d_A Nicotinamide nucleotide 28.6 1.3E+02 0.0045 27.1 7.1 94 39-152 18-122 (384)
218 2iz1_A 6-phosphogluconate dehy 28.6 18 0.00062 34.0 1.2 53 219-271 57-124 (474)
219 1a4i_A Methylenetetrahydrofola 28.1 2.1E+02 0.0072 25.2 8.1 59 4-68 166-228 (301)
220 2pgd_A 6-phosphogluconate dehy 28.1 26 0.00088 33.0 2.2 53 219-271 55-122 (482)
221 1b0a_A Protein (fold bifunctio 28.0 1.4E+02 0.0048 26.2 6.8 59 4-68 160-222 (288)
222 1lc0_A Biliverdin reductase A; 27.9 32 0.0011 29.9 2.7 21 218-238 54-76 (294)
223 3kux_A Putative oxidoreductase 27.6 49 0.0017 29.3 3.9 33 218-250 56-100 (352)
224 4huj_A Uncharacterized protein 27.4 37 0.0013 28.0 2.9 18 220-237 74-91 (220)
225 3o8q_A Shikimate 5-dehydrogena 27.1 31 0.001 30.1 2.4 20 220-239 180-199 (281)
226 1ydw_A AX110P-like protein; st 27.0 37 0.0013 30.3 3.0 21 218-238 60-82 (362)
227 3gdo_A Uncharacterized oxidore 27.0 39 0.0013 30.2 3.1 33 218-250 54-98 (358)
228 3c1a_A Putative oxidoreductase 26.7 41 0.0014 29.2 3.2 21 218-238 58-80 (315)
229 4h3v_A Oxidoreductase domain p 26.6 40 0.0014 29.9 3.2 33 218-250 64-108 (390)
230 4b4u_A Bifunctional protein fo 26.6 1.7E+02 0.0059 25.8 7.2 59 4-68 180-242 (303)
231 2q3e_A UDP-glucose 6-dehydroge 26.5 54 0.0019 30.6 4.2 19 220-238 401-419 (467)
232 3abi_A Putative uncharacterize 26.5 42 0.0014 30.0 3.3 19 220-238 70-88 (365)
233 3h75_A Periplasmic sugar-bindi 26.3 1.3E+02 0.0045 25.9 6.6 75 1-79 1-92 (350)
234 3p2o_A Bifunctional protein fo 26.1 2.9E+02 0.0099 24.1 8.6 59 4-68 161-223 (285)
235 3q2i_A Dehydrogenase; rossmann 25.3 45 0.0015 29.5 3.3 21 218-238 64-86 (354)
236 2p2s_A Putative oxidoreductase 25.3 66 0.0023 28.1 4.4 21 218-238 55-77 (336)
237 3phh_A Shikimate dehydrogenase 25.1 96 0.0033 26.8 5.2 41 226-279 171-211 (269)
238 3vtf_A UDP-glucose 6-dehydroge 25.1 57 0.002 30.5 4.0 19 220-239 90-108 (444)
239 3moi_A Probable dehydrogenase; 25.1 38 0.0013 30.6 2.7 21 218-238 53-75 (387)
240 2glx_A 1,5-anhydro-D-fructose 24.6 63 0.0022 28.1 4.1 21 218-238 51-73 (332)
241 3r7f_A Aspartate carbamoyltran 24.4 3.4E+02 0.012 23.8 8.8 17 218-234 194-210 (304)
242 4a5o_A Bifunctional protein fo 24.3 2.3E+02 0.0078 24.8 7.5 59 4-68 162-224 (286)
243 4ew6_A D-galactose-1-dehydroge 24.0 56 0.0019 28.8 3.6 56 218-273 69-163 (330)
244 3cea_A MYO-inositol 2-dehydrog 23.0 76 0.0026 27.7 4.3 21 218-238 60-82 (346)
245 2y0c_A BCEC, UDP-glucose dehyd 23.0 42 0.0014 31.6 2.7 19 220-238 398-416 (478)
246 1y81_A Conserved hypothetical 22.9 52 0.0018 25.2 2.8 50 218-270 60-118 (138)
247 3fhl_A Putative oxidoreductase 22.9 38 0.0013 30.2 2.2 21 218-238 54-76 (362)
248 2qr3_A Two-component system re 22.7 62 0.0021 23.4 3.2 50 1-57 1-54 (140)
249 3n53_A Response regulator rece 22.4 60 0.0021 23.6 3.0 50 1-57 1-53 (140)
250 3rc1_A Sugar 3-ketoreductase; 22.3 51 0.0017 29.3 3.0 21 219-239 79-101 (350)
251 4gi5_A Quinone reductase; prot 21.4 1E+02 0.0034 26.9 4.6 32 1-33 20-60 (280)
252 3ec7_A Putative dehydrogenase; 21.4 45 0.0015 29.7 2.4 22 218-239 76-99 (357)
253 2q62_A ARSH; alpha/beta, flavo 21.3 1.3E+02 0.0046 25.3 5.4 68 1-70 32-124 (247)
254 1i1q_B Anthranilate synthase c 21.1 2.8E+02 0.0096 21.9 7.1 42 4-49 1-44 (192)
255 3kcn_A Adenylate cyclase homol 21.1 43 0.0015 24.9 2.0 50 1-57 2-55 (151)
256 4gqa_A NAD binding oxidoreduct 21.1 60 0.0021 29.4 3.3 33 218-250 85-129 (412)
257 4a26_A Putative C-1-tetrahydro 21.0 3.1E+02 0.01 24.1 7.7 59 4-68 166-230 (300)
258 1vkn_A N-acetyl-gamma-glutamyl 20.3 78 0.0027 28.6 3.8 20 220-239 71-90 (351)
No 1
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=100.00 E-value=2.5e-51 Score=381.83 Aligned_cols=237 Identities=29% Similarity=0.437 Sum_probs=208.3
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
|+|||||++++ ++ ++.++.|++.++++.+.... ..+.+++.+.++++|++++++..++++++|++++|+||+|+++
T Consensus 26 ~~~~kvlv~~~-~~--~~~~~~l~~~~~v~~~~~~~-~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~ 101 (345)
T 4g2n_A 26 HPIQKAFLCRR-FT--PAIEAELRQRFDLEVNLEDT-VLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATL 101 (345)
T ss_dssp -CCCEEEESSC-CC--HHHHHHHHHHSEEEECTTCC-CCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEES
T ss_pred CCCCEEEEeCC-CC--HHHHHHHHccCCEEEecCCC-CCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEc
Confidence 46899999995 88 89999999999998754322 5789999999999999999877899999999876788888888
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
++|+|+||+++++++||.|+|+ |++++.+|
T Consensus 102 ~~G~D~id~~~a~~~gI~V~n~--------------------------------------------------pg~~~~~v 131 (345)
T 4g2n_A 102 SVGYDHIDMAAARSLGIKVLHT--------------------------------------------------PDVLSDAC 131 (345)
T ss_dssp SSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CSCCHHHH
T ss_pred CCcccccCHHHHHhCCEEEEEC--------------------------------------------------CcccchHH
Confidence 8888888888777777666666 88899999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------------- 212 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------------- 212 (294)
||++++++|++.|++.++.+.+++|.|..+......| ++++|||+||||+
T Consensus 132 AE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g--~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~ 209 (345)
T 4g2n_A 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLG--MGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSH 209 (345)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCB--CCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccc--cccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcch
Confidence 9999999999999999999999999998654333456 8999999999999
Q ss_pred --cCCCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259 213 --ELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV 276 (294)
Q Consensus 213 --~~~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV 276 (294)
..+.++. ++++++++||+|++|+|+|++|+++|+++.| ||++||++||++||++|+|+||+|||
T Consensus 210 ~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDV 289 (345)
T 4g2n_A 210 ALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDV 289 (345)
T ss_dssp HHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESC
T ss_pred hhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecC
Confidence 1133444 8999999999999999999999999999988 99999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCCC
Q psy5259 277 MIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 277 ~~~EP~~~~~~l~~~~nv 294 (294)
|++|| +.++|||++|||
T Consensus 290 f~~EP-~~~~pL~~~~nv 306 (345)
T 4g2n_A 290 FANEP-AIDPRYRSLDNI 306 (345)
T ss_dssp CTTTT-SCCTTGGGCTTE
T ss_pred CCCCC-CCCchHHhCCCE
Confidence 99999 888999999996
No 2
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=100.00 E-value=7.4e-49 Score=363.92 Aligned_cols=234 Identities=27% Similarity=0.454 Sum_probs=205.2
Q ss_pred CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
|||||++.+ ++ ++.++.|++.++++...... ..+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++
T Consensus 2 ~~kvlv~~~-~~--~~~~~~l~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~-~~Lk~I~~~~~ 76 (330)
T 4e5n_A 2 LPKLVITHR-VH--EEILQLLAPHCELITNQTDS-TLTREEILRRCRDAQAMMAFMPDRVDADFLQAC-PELRVIGCALK 76 (330)
T ss_dssp CCEEEECSC-CC--HHHHHHHTTTCEEECCCSSS-CCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHC-TTCCEEEESSS
T ss_pred CCEEEEecC-CC--HHHHHHHHhCCeEEEecCCC-CCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhC-CCCcEEEECCC
Confidence 799999994 88 99999999988888654322 468899999999999999976789999999987 78888888877
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE 162 (294)
|+|+||++.++++||.|+|+ |++++.+|||
T Consensus 77 G~d~id~~~~~~~gI~v~n~--------------------------------------------------~~~~~~~vAE 106 (330)
T 4e5n_A 77 GFDNFDVDACTARGVWLTFV--------------------------------------------------PDLLTVPTAE 106 (330)
T ss_dssp CCTTBCHHHHHHTTCEEECC--------------------------------------------------SSTTHHHHHH
T ss_pred cccccCHHHHHhcCcEEEeC--------------------------------------------------CCCCchHHHH
Confidence 77777777777666666555 8899999999
Q ss_pred HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------------------------
Q psy5259 163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------ 212 (294)
Q Consensus 163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------------ 212 (294)
|+++++|++.|++..+++.+++|+|..|... ..| ++++|||+||||+
T Consensus 107 ~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~--~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~ 183 (330)
T 4e5n_A 107 LAIGLAVGLGRHLRAADAFVRSGKFRGWQPR-FYG--TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQT 183 (330)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTTCCCSCCSC-CCC--CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHhCCccccCcc-ccC--CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhH
Confidence 9999999999999999999999999865542 456 8999999999999
Q ss_pred --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
..++++.++++++++||+|++|+|+|++|+++|+++.| ||++||++||++||++|+|+||+||||
T Consensus 184 ~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~ 263 (330)
T 4e5n_A 184 EQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVF 263 (330)
T ss_dssp HHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred HHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEeccc
Confidence 11334568999999999999999999999999999887 999999999999999999999999999
Q ss_pred CCC-------CCCCCCCCcCCCCC
Q psy5259 278 IPE-------PMPADHPLVQLDNC 294 (294)
Q Consensus 278 ~~E-------P~~~~~~l~~~~nv 294 (294)
++| |++.++|||++|||
T Consensus 264 ~~E~~~~~~~Pl~~~~~L~~~~nv 287 (330)
T 4e5n_A 264 EMEDWARADRPQQIDPALLAHPNT 287 (330)
T ss_dssp GGGCTTCTTCCSSCCHHHHTCSSE
T ss_pred ccccccccCCCCCCCchHHcCCCE
Confidence 999 99999999999996
No 3
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=100.00 E-value=4.5e-49 Score=365.84 Aligned_cols=228 Identities=28% Similarity=0.433 Sum_probs=183.6
Q ss_pred CeEEEecCCCCCCchhHHHhhc---cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 4 PKLLLTRNDYPRVSPAYDILED---MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~---~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
||||++. .| ++....+++ ...+..+.......+.+ .++++|+++++..+++++++|+++ |+||+|+++
T Consensus 1 Mkil~~~--~~--~~~~p~~~e~l~~~~~~~~~~~~~~~~~~----~l~~ad~i~v~~~~~i~~~~l~~~-p~Lk~I~~~ 71 (334)
T 3kb6_A 1 MNVLFTS--VP--QEDVPFYQEALKDLSLKIYTTDVSKVPEN----ELKKAELISVFVYDKLTEELLSKM-PRLKLIHTR 71 (334)
T ss_dssp -CEEECS--CC--TTHHHHHHHHTTTSCEEECSSCGGGSCHH----HHHHCSEEEECTTSCBCHHHHHTC-TTCCEEEES
T ss_pred CEEEEeC--CC--cccCHHHHHHHHhCCcEEEeCCcccCCHH----HhcCCCEEEEeCCCCCCHHHHhcC-CCCcEEEEC
Confidence 6799986 45 333333332 23344333221123333 467899999988889999999987 778777777
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
++|+|+||++.++++||.|+|+ |++++.+|
T Consensus 72 ~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------p~~~~~~v 101 (334)
T 3kb6_A 72 SVGFDHIDLDYCKKKGILVTHI--------------------------------------------------PAYSPESV 101 (334)
T ss_dssp SSCCTTBCHHHHHHHTCEEECC--------------------------------------------------TTSCHHHH
T ss_pred CcccchhcHHHHHHCCCEEEEC--------------------------------------------------CCcCcHHH
Confidence 7777777777666656555555 88999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------------- 212 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------------- 212 (294)
|||+++++|++.|++..+.+.++.+.|..+.. ..| ++++|||+||+|+
T Consensus 102 AE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~--~~~--~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~ 177 (334)
T 3kb6_A 102 AEHTFAMILTLVKRLKRIEDRVKKLNFSQDSE--ILA--RELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED 177 (334)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGG--GCB--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred HHHHHHHHHHHhhccccccccccccccccccc--ccc--ceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchh
Confidence 99999999999999999999999999965443 456 8999999999999
Q ss_pred --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
+.+..+.+|+++|++||+||+|||+|++|+||||++.| ||++|||+||++||++|+|+||+||||
T Consensus 178 ~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~ 257 (334)
T 3kb6_A 178 LKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVF 257 (334)
T ss_dssp HHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCC
T ss_pred hhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCC
Confidence 23456779999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCCCCCC---------------CCcCCCCC
Q psy5259 278 IPEPMPADH---------------PLVQLDNC 294 (294)
Q Consensus 278 ~~EP~~~~~---------------~l~~~~nv 294 (294)
++||++.++ |||++|||
T Consensus 258 ~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nv 289 (334)
T 3kb6_A 258 EDEEILILKKYTEGKATDKNLKILELACKDNV 289 (334)
T ss_dssp TTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTE
T ss_pred CCCCCcccccccccccccccccchhhccCCCE
Confidence 999987766 68888986
No 4
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=100.00 E-value=4.7e-49 Score=365.89 Aligned_cols=233 Identities=26% Similarity=0.386 Sum_probs=170.5
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
|+|||||++++ ++ ++.++.|++.|+++.+.. ..+++++.+.++++|++++++..++++++|+.+ |+||+|+++
T Consensus 28 ~~~~~vl~~~~-~~--~~~~~~L~~~~~v~~~~~---~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~-p~Lk~I~~~ 100 (340)
T 4dgs_A 28 NVKPDLLLVEP-MM--PFVMDELQRNYSVHRLYQ---AADRPALEAALPSIRAVATGGGAGLSNEWMEKL-PSLGIIAIN 100 (340)
T ss_dssp -----CEECSC-CC--HHHHHTHHHHSCCEETTC---GGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHC-SSCCEEEEE
T ss_pred CCCCEEEEECC-CC--HHHHHHHhcCCcEEEeCC---CCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhC-CCCEEEEEC
Confidence 67999999995 88 999999999999987643 246788888889999999987789999999986 778777777
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
++|+|+||+++++++||.|+|+ |++++.+|
T Consensus 101 g~G~d~id~~~a~~~gI~V~n~--------------------------------------------------pg~~~~~v 130 (340)
T 4dgs_A 101 GVGTDKVDLARARRRNIDVTTT--------------------------------------------------PGVLADDV 130 (340)
T ss_dssp SSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CSSSHHHH
T ss_pred CCCccccCHHHHHhCCEEEEEC--------------------------------------------------CCCCcchH
Confidence 7777777777776666666555 88999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------c---------------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------E--------------- 213 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~--------------- 213 (294)
||++++++|++.|++.++++.+++|.|.+... +..| ++++|||+||||+ .
T Consensus 131 AE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~--~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~ 207 (340)
T 4dgs_A 131 ADLGIALMLAVLRRVGDGDRLVREGRWAAGEQ-LPLG--HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG 207 (340)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCC--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT
T ss_pred HHHHHHHHHHHHhChHHHHHHHhcCCcccccC-cCcc--ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc
Confidence 99999999999999999999999999975311 1346 8999999999999 1
Q ss_pred CCCc-ccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259 214 LGAQ-LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIP 279 (294)
Q Consensus 214 ~~~~-~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~ 279 (294)
.+.. ..++++++++||+|++|+|+|++|+++|+++.| ||++||++||++||++|+|+||+||||++
T Consensus 208 ~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~ 287 (340)
T 4dgs_A 208 VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVN 287 (340)
T ss_dssp SCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSS
T ss_pred cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCC
Confidence 1122 348999999999999999999999999999887 99999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCC
Q psy5259 280 EPMPADHPLVQLDNC 294 (294)
Q Consensus 280 EP~~~~~~l~~~~nv 294 (294)
||++. +|||++|||
T Consensus 288 EP~~~-~~L~~~~nv 301 (340)
T 4dgs_A 288 EPAIR-SEFHTTPNT 301 (340)
T ss_dssp SSSCC-SHHHHSSSE
T ss_pred CCCCc-cchhhCCCE
Confidence 99876 599999996
No 5
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=100.00 E-value=5.2e-47 Score=359.37 Aligned_cols=230 Identities=26% Similarity=0.411 Sum_probs=194.0
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cc-eEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MF-DIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~-~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
|||||+++ +++ +...+.|++ +| ++..++. ..+.+++.+.++++|++++++..++++++|+++ |+||+|+++
T Consensus 15 ~~kIl~~~-~i~--~~~~~~l~~~g~~~v~~~~~---~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~-p~Lk~I~~~ 87 (416)
T 3k5p_A 15 RINVLLLE-GIS--QTAVEYFKSSGYTNVTHLPK---ALDKADLIKAISSAHIIGIRSRTQLTEEIFAAA-NRLIAVGCF 87 (416)
T ss_dssp GSCEEECS-CCC--HHHHHHHHHTTCCCEEECSS---CCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHC-TTCCEEEEC
T ss_pred CcEEEEEC-CCC--HHHHHHHHHCCCcEEEECCC---CCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhC-CCcEEEEEC
Confidence 68999999 488 888999987 57 7876654 478999999999999998887789999999986 778777777
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
++|+|+||+++++++||.|+|+ |++++++|
T Consensus 88 ~~G~d~IDl~~a~~~GI~V~n~--------------------------------------------------p~~n~~aV 117 (416)
T 3k5p_A 88 SVGTNQVELKAARKRGIPVFNA--------------------------------------------------PFSNTRSV 117 (416)
T ss_dssp SSCCTTBCHHHHHHTTCCEECC--------------------------------------------------SSTTHHHH
T ss_pred ccccCccCHHHHHhcCcEEEeC--------------------------------------------------CCcccHHH
Confidence 7777777777766666655555 88999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E------ 213 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~------ 213 (294)
||++++++|++.|++..+.+.+++|.|.... ..+ ++++|||+||||+ +
T Consensus 118 AE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~---~~~--~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~ 192 (416)
T 3k5p_A 118 AELVIGEIIMLMRRIFPRSVSAHAGGWEKTA---IGS--REVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ 192 (416)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC---TTC--CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC
T ss_pred HHHHHHHHHHHhcccHHHHHhhhcccccccC---CCC--ccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc
Confidence 9999999999999999999999999997532 234 8999999999999 1
Q ss_pred -CCC-cccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259 214 -LGA-QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI 278 (294)
Q Consensus 214 -~~~-~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~ 278 (294)
.+. ...++++++++||+|++|+|+|++|+++|+++.| ||++||++||++||++|+|+||+||||+
T Consensus 193 ~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~ 272 (416)
T 3k5p_A 193 YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFP 272 (416)
T ss_dssp BTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCS
T ss_pred ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCC
Confidence 011 2348999999999999999999999999999988 9999999999999999999999999999
Q ss_pred CCCCCCC----CCCcCCCCC
Q psy5259 279 PEPMPAD----HPLVQLDNC 294 (294)
Q Consensus 279 ~EP~~~~----~~l~~~~nv 294 (294)
+||++.+ +|||++|||
T Consensus 273 ~EP~~~~~~~~~pL~~~~nv 292 (416)
T 3k5p_A 273 VEPASNGERFSTPLQGLENV 292 (416)
T ss_dssp SCCSSTTSCCCCTTTTCTTE
T ss_pred CCCCCcccccchhHhcCCCE
Confidence 9998875 799999996
No 6
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=100.00 E-value=3.6e-46 Score=348.30 Aligned_cols=235 Identities=25% Similarity=0.384 Sum_probs=194.5
Q ss_pred CCCCeEEEecCCCCCCc---hhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEe-CCCCCCCHHHHhhcCCCceE
Q psy5259 1 MSKPKLLLTRNDYPRVS---PAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLC-NPHQKVDKEALDESGENLKV 76 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~---~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~-~~~~~~~~~~l~~~~~~lk~ 76 (294)
|+ |||++++. ++... +.++.|+ .+++..++.. ..+.+++.+.++++|++++ +...++++++|+.+ |+||+
T Consensus 1 ms-mki~~~d~-~~~~~~~~~~~~~l~-~~~v~~~~~~--~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~-~~Lk~ 74 (352)
T 3gg9_A 1 MS-LKIAVLDD-YQDAVRKLDCFSLLQ-DHEVKVFNNT--VKGVGQLAARVADVEALVLIRERTRVTRQLLDRL-PKLKI 74 (352)
T ss_dssp -C-CEEEECCC-TTCCGGGSGGGGGGT-TSEEEECCSC--CCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTC-TTCCE
T ss_pred Cc-eEEEEEcC-ccccchhhhhhhhhc-CceEEEecCC--CCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhC-CCCeE
Confidence 65 89999984 65322 2345554 4888887653 2478899999999999998 56689999999986 67777
Q ss_pred EEeccccC----cccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEee
Q psy5259 77 ISTFSVGH----DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTV 152 (294)
Q Consensus 77 i~~~~~G~----d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~ 152 (294)
|+..++|+ |+||+++++++||.|+|+
T Consensus 75 I~~~g~G~~~~~d~id~~~a~~~gI~V~n~-------------------------------------------------- 104 (352)
T 3gg9_A 75 ISQTGRVSRDAGGHIDLEACTDKGVVVLEG-------------------------------------------------- 104 (352)
T ss_dssp EEESSCCCCSSSCSBCHHHHHHHTCEEECC--------------------------------------------------
T ss_pred EEEeCcccCCccCcccHHHHHhCCeEEEEC--------------------------------------------------
Confidence 77777776 666666666555555554
Q ss_pred CCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccc-------cccccccccCcCCCEEEEEcc-------------
Q psy5259 153 GPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQ-------TQTVISDIIGLNGSTVGIVGT------------- 212 (294)
Q Consensus 153 ~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~-------~~~~~g~~~~l~gktvgIiG~------------- 212 (294)
|++ +.+||||+++++|++.|++..+.+.+++|.|.... +....| ++++|||+||||+
T Consensus 105 pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~--~~l~g~tvGIIGlG~IG~~vA~~l~~ 181 (352)
T 3gg9_A 105 KGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIG--RVLKGQTLGIFGYGKIGQLVAGYGRA 181 (352)
T ss_dssp CCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSB--CCCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccC--ccCCCCEEEEEeECHHHHHHHHHHHh
Confidence 888 99999999999999999999999999999997532 111345 8999999999999
Q ss_pred ------------------cCCCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHH
Q psy5259 213 ------------------ELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEAL 260 (294)
Q Consensus 213 ------------------~~~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL 260 (294)
..++++. ++++++++||+|++|+|+|++|+++|+++.| ||++||++||
T Consensus 182 ~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL 261 (352)
T 3gg9_A 182 FGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGM 261 (352)
T ss_dssp TTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHH
T ss_pred CCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHH
Confidence 2345555 8999999999999999999999999999888 9999999999
Q ss_pred HHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259 261 VEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 261 ~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv 294 (294)
++||++|+|+||+||||++||+++++|||++|||
T Consensus 262 ~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv 295 (352)
T 3gg9_A 262 VTALNRGRPGMAAIDVFETEPILQGHTLLRMENC 295 (352)
T ss_dssp HHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTE
T ss_pred HHHHHhCCccEEEecccCCCCCCCCChhhcCCCE
Confidence 9999999999999999999999999999999996
No 7
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=100.00 E-value=1.9e-46 Score=346.32 Aligned_cols=226 Identities=24% Similarity=0.288 Sum_probs=186.0
Q ss_pred CCCCeEEEecCCCCCCchhHHHh-hcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDIL-EDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIS 78 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l-~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~ 78 (294)
|.|||||++.+ .. +...+.| ++. .++.+... .+.+++.+.++++|+++++ .++++++|+++ |+||+|+
T Consensus 3 ~~~mkili~~~-~~--~~~~~~L~~~~~p~~~~~~~----~~~~~~~~~~~~ad~li~~--~~~~~~~l~~~-~~Lk~I~ 72 (324)
T 3hg7_A 3 LSQRTLLLLSQ-DN--AHYERLLKAAHLPHLRILRA----DNQSDAEKLIGEAHILMAE--PARAKPLLAKA-NKLSWFQ 72 (324)
T ss_dssp -CCEEEEEEST-TH--HHHHHHHHHSCCTTEEEEEC----SSHHHHHHHGGGCSEEEEC--HHHHGGGGGGC-TTCCEEE
T ss_pred ccccEEEEecC-CC--HHHHHHHhhccCCCeEEEeC----CChhHHHHHhCCCEEEEEC--CCCCHHHHhhC-CCceEEE
Confidence 46899999995 76 7888888 553 34444322 3567888899999999985 35667888875 6666666
Q ss_pred eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259 79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD 158 (294)
Q Consensus 79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~ 158 (294)
+.++|+|+||.+.++ + ||.|+|+|++++.
T Consensus 73 ~~~~G~d~id~~~~~--------------------------------------------------~-gI~v~n~~g~~~~ 101 (324)
T 3hg7_A 73 STYAGVDVLLDARCR--------------------------------------------------R-DYQLTNVRGIFGP 101 (324)
T ss_dssp ESSSCCGGGSCTTSC--------------------------------------------------C-SSEEECCCSCCHH
T ss_pred ECCCCCCccChHHHh--------------------------------------------------C-CEEEEECCCcChH
Confidence 666666666555443 2 5556666999999
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------cC---
Q psy5259 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------EL--- 214 (294)
Q Consensus 159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~~--- 214 (294)
+||||+++++|++.|++..+.+.+++|.|.. ..+ ++++|||+||||+ +.
T Consensus 102 ~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-----~~~--~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~ 174 (324)
T 3hg7_A 102 LMSEYVFGHLLSLMRQLPLYREQQKQRLWQS-----HPY--QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGR 174 (324)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC-----CCC--CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHhhCCCcC-----CCC--cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChH
Confidence 9999999999999999999999999999975 234 8999999999999 00
Q ss_pred -------CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259 215 -------GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGL 274 (294)
Q Consensus 215 -------~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~L 274 (294)
.....++++++++||+|++|+|+|++|+++|+++.| ||++||++||++||++|+|+||+|
T Consensus 175 ~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~l 254 (324)
T 3hg7_A 175 ERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVL 254 (324)
T ss_dssp CCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEE
T ss_pred HhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEe
Confidence 012357999999999999999999999999999998 999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCcCCCCC
Q psy5259 275 DVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 275 DV~~~EP~~~~~~l~~~~nv 294 (294)
|||++||+|+++|||++|||
T Consensus 255 DV~~~EPl~~~~pL~~~~nv 274 (324)
T 3hg7_A 255 DVFEQEPLPADSPLWGQPNL 274 (324)
T ss_dssp SCCSSSSCCTTCTTTTCTTE
T ss_pred ccCCCCCCCCCChhhcCCCE
Confidence 99999999999999999996
No 8
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=100.00 E-value=1.9e-46 Score=349.92 Aligned_cols=221 Identities=28% Similarity=0.458 Sum_probs=187.7
Q ss_pred hhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCC--CCCCHHHHhhcCCCceEEEeccccCcccChhhHhh
Q psy5259 18 PAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPH--QKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS 94 (294)
Q Consensus 18 ~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~--~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~ 94 (294)
...+.|++ +++++.++.. ..+.+++.+.++++|++++++. .++++++|+++ |+||+|++.++|+|+||++.+++
T Consensus 31 ~~~~~L~~~g~ev~~~~~~--~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~-p~Lk~i~~~g~G~d~id~~~a~~ 107 (351)
T 3jtm_A 31 GIRDWLESQGHQYIVTDDK--EGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-KNLKLLLTAGIGSDHIDLQAAAA 107 (351)
T ss_dssp GCHHHHHHTTCEEEEESCC--SSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHC-SSCCEEEESSSCCTTBCHHHHHH
T ss_pred HHHHHHHHCCCEEEEeCCC--CCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhC-CCCeEEEEeCeeecccCHHHHHh
Confidence 45677776 6899887654 2466789999999999998743 46999999986 77888888777777777777776
Q ss_pred CCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcC
Q psy5259 95 RGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 174 (294)
Q Consensus 95 ~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~ 174 (294)
+||.|+|+ |++++.+||||+++++|++.|+
T Consensus 108 ~gI~V~n~--------------------------------------------------~g~~~~~vAE~~~~l~L~~~R~ 137 (351)
T 3jtm_A 108 AGLTVAEV--------------------------------------------------TGSNVVSVAEDELMRILILMRN 137 (351)
T ss_dssp TTCEEEEC--------------------------------------------------TTTTHHHHHHHHHHHHHHHHHT
T ss_pred cCeeEEEC--------------------------------------------------CCcCchHHHHHHHHHHHHHhhC
Confidence 66666555 8899999999999999999999
Q ss_pred chhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------------cCCCccc-CH
Q psy5259 175 FQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------------ELGAQLV-PL 221 (294)
Q Consensus 175 ~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------------------------~~~~~~~-~l 221 (294)
+..+++.+++|.|..... ...+ ++++|||+||||+ +.++++. ++
T Consensus 138 ~~~~~~~~~~g~W~~~~~-~~~~--~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l 214 (351)
T 3jtm_A 138 FVPGYNQVVKGEWNVAGI-AYRA--YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDL 214 (351)
T ss_dssp HHHHHHHHHTTCCCHHHH-HTTC--CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCH
T ss_pred cHHHHHHHHcCCCccccc-cCCc--ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCH
Confidence 999999999999974321 1234 7999999999999 1133344 89
Q ss_pred HHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCC
Q psy5259 222 DTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288 (294)
Q Consensus 222 ~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l 288 (294)
++++++||+|++|+|+|++|+|+||++.| ||++||++||++||++|+|+||+||||++||+|+++||
T Consensus 215 ~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL 294 (351)
T 3jtm_A 215 NEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPW 294 (351)
T ss_dssp HHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGG
T ss_pred HHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChh
Confidence 99999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy5259 289 VQLDNC 294 (294)
Q Consensus 289 ~~~~nv 294 (294)
|++|||
T Consensus 295 ~~~~nv 300 (351)
T 3jtm_A 295 RYMPNQ 300 (351)
T ss_dssp GTSTTB
T ss_pred hcCCCE
Confidence 999996
No 9
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=100.00 E-value=8.6e-46 Score=351.59 Aligned_cols=230 Identities=25% Similarity=0.363 Sum_probs=188.5
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cc-eEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MF-DIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~-~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
||||++++ +++ +...+.|++ ++ ++..++. ..+.+++.+.++++|++++++.+++++++|+.+ |+||+|+++
T Consensus 4 ~~kil~~~-~~~--~~~~~~l~~~~~~~v~~~~~---~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~ 76 (404)
T 1sc6_A 4 KIKFLLVE-GVH--QKALESLRAAGYTNIEFHKG---ALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAF 76 (404)
T ss_dssp SCCEEECS-CCC--HHHHHHHHHTTCCCEEECSS---CCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEEC
T ss_pred ceEEEEeC-CCC--HHHHHHHHhCCCcEEEEcCC---CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCcEEEEC
Confidence 67999998 477 888888877 47 7877653 468899999999999998887789999999986 778777777
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
++|+|+||+++++++||.|+|+ |++++.+|
T Consensus 77 ~~G~d~iD~~~a~~~GI~V~n~--------------------------------------------------p~~n~~~v 106 (404)
T 1sc6_A 77 AIGTNQVDLDAAAKRGIPVFNA--------------------------------------------------PFSNTRSV 106 (404)
T ss_dssp SSCCTTBCHHHHHHTTCCEECC--------------------------------------------------TTTTHHHH
T ss_pred CcccCccCHHHHHhCCCEEEec--------------------------------------------------CcccHHHH
Confidence 7777777777766666655555 88999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------------c
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------------E 213 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------------~ 213 (294)
|||+++++|++.|++.++++.+++|.|.+.. ..| .+++|||+||||+ .
T Consensus 107 AE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~---~~~--~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~ 181 (404)
T 1sc6_A 107 AELVIGELLLLLRGVPEANAKAHRGVGNKLA---AGS--FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 181 (404)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTCCC--------C--CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred HHHHHHHHHHHHhChHHHHHHHHcCCccccC---CCc--cccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc
Confidence 9999999999999999999999999997532 235 8999999999999 1
Q ss_pred C-CCcc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259 214 L-GAQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI 278 (294)
Q Consensus 214 ~-~~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~ 278 (294)
. +++. .++++++++||+|++|+|+|++|+++|+++.| ||++||++||+++|++|+++||+||||+
T Consensus 182 ~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~ 261 (404)
T 1sc6_A 182 LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFP 261 (404)
T ss_dssp CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC--
T ss_pred cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecC
Confidence 1 1333 38999999999999999999999999999888 9999999999999999999999999999
Q ss_pred CCCCCC----CCCCcCCCCC
Q psy5259 279 PEPMPA----DHPLVQLDNC 294 (294)
Q Consensus 279 ~EP~~~----~~~l~~~~nv 294 (294)
+||++. ++|||++|||
T Consensus 262 ~EP~~~~~~~~~pL~~~~nv 281 (404)
T 1sc6_A 262 TEPATNSDPFTSPLAEFDNV 281 (404)
T ss_dssp -------CTTTGGGTTCTTE
T ss_pred CCCCCccccccchhhcCCCE
Confidence 999874 4799999996
No 10
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.5e-45 Score=337.27 Aligned_cols=231 Identities=34% Similarity=0.580 Sum_probs=194.0
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEe
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIST 79 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~ 79 (294)
|+||||+++.+ ++ ++..+.|++ .+++.... ..+.+++.+.++++|+++++...++++++|+.+ |+||+|++
T Consensus 1 ~~~~~il~~~~-~~--~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~ 72 (307)
T 1wwk_A 1 MKRMKVLVAAP-LH--EKAIQVLKDAGLEVIYEE----YPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA-PKLKVIAR 72 (307)
T ss_dssp ---CEEEECSC-CC--HHHHHHHHHTTCEEEECS----SCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTC-TTCCEEEE
T ss_pred CCceEEEEeCC-CC--HHHHHHHHhCCeEEEeCC----CCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCeEEEE
Confidence 67899999984 77 777888877 56775422 257888999999999999886667999999876 67777777
Q ss_pred ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259 80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 159 (294)
Q Consensus 80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~ 159 (294)
.++|+|+||++.++++||.|+|+ |++++.+
T Consensus 73 ~~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------~g~~~~~ 102 (307)
T 1wwk_A 73 AGVGLDNIDVEAAKEKGIEVVNA--------------------------------------------------PAASSRS 102 (307)
T ss_dssp SSSCCTTBCHHHHHHHTCEEECC--------------------------------------------------GGGGHHH
T ss_pred CCccccccCHHHHHhCCcEEEEC--------------------------------------------------CCCChHH
Confidence 77777777666666555555555 8899999
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------------
Q psy5259 160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------- 212 (294)
Q Consensus 160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------------------- 212 (294)
||||+++++|++.|++..+++.+++|.|.+.. ..| ++++|+|+||||+
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~---~~~--~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~ 177 (307)
T 1wwk_A 103 VAELAVGLMFSVARKIAFADRKMREGVWAKKE---AMG--IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE 177 (307)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTT---CCB--CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCccC---cCC--cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 99999999999999999999999999996421 345 8999999999999
Q ss_pred ----cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEee
Q psy5259 213 ----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLD 275 (294)
Q Consensus 213 ----~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LD 275 (294)
..+++..++++++++||+|++|+|++++|+++|+++.| ||++||+++|.++|++|+|+||+||
T Consensus 178 ~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lD 257 (307)
T 1wwk_A 178 ERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLD 257 (307)
T ss_dssp HHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEES
T ss_pred hhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEe
Confidence 12345568999999999999999999999999998877 9999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcCCCCC
Q psy5259 276 VMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 276 V~~~EP~~~~~~l~~~~nv 294 (294)
||++||+++++|||++|||
T Consensus 258 v~~~eP~~~~~~L~~~~nv 276 (307)
T 1wwk_A 258 VFEEEPLPKDHPLTKFDNV 276 (307)
T ss_dssp CCSSSSCCTTCGGGGCTTE
T ss_pred cCCCCCCCCCChHHhCCCE
Confidence 9999999899999999996
No 11
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=100.00 E-value=9.3e-46 Score=341.96 Aligned_cols=225 Identities=26% Similarity=0.405 Sum_probs=184.9
Q ss_pred CCeEEEecCCCCCCchhHHHhhccc-eEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILEDMF-DIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS 81 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~ 81 (294)
|||||++.+ ++ ++..+.|++.+ ++...... ..+.+ .++++|+++++.. ++ +++|+...|+||+|++.+
T Consensus 1 m~kil~~~~-~~--~~~~~~L~~~~~~~~~~~~~--~~~~~----~~~~ad~l~~~~~-~~-~~~l~~~~~~Lk~I~~~~ 69 (324)
T 3evt_A 1 MSLVLMAQA-TK--PEQLQQLQTTYPDWTFKDAA--AVTAA----DYDQIEVMYGNHP-LL-KTILARPTNQLKFVQVIS 69 (324)
T ss_dssp -CEEEECSC-CC--HHHHHHHHHHCTTCEEEETT--SCCTT----TGGGEEEEESCCT-HH-HHHHHSTTCCCCEEECSS
T ss_pred CcEEEEecC-CC--HHHHHHHHhhCCCeEEecCC--ccChH----HhCCcEEEEECCc-Ch-HHHHHhhCCCceEEEECC
Confidence 478999995 88 89999998843 33322221 12333 5788999988743 57 899943347888888888
Q ss_pred ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259 82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 161 (294)
Q Consensus 82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA 161 (294)
+|+|+||++.++++||.|+|+ |++++.+||
T Consensus 70 ~G~d~id~~~~~~~gI~v~n~--------------------------------------------------~g~~~~~vA 99 (324)
T 3evt_A 70 AGVDYLPLKALQAAGVVVANT--------------------------------------------------SGIHADAIS 99 (324)
T ss_dssp SCCTTSCHHHHHHTTCEEECC--------------------------------------------------TTHHHHHHH
T ss_pred ccccccCHHHHHHCCcEEEEC--------------------------------------------------CCcCchHHH
Confidence 888777777777666666666 889999999
Q ss_pred HHHHHHHHHHhcCchhh-hhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC-------------
Q psy5259 162 EFNIGLAIAVSRRFQQG-HNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG------------- 215 (294)
Q Consensus 162 E~al~l~l~~~r~~~~~-~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~------------- 215 (294)
||+++++|++.|++..+ .+.++++.|.... .+ ++++|||+||||+ .+|
T Consensus 100 E~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~--~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~ 173 (324)
T 3evt_A 100 ESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TT--STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPA 173 (324)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CC--CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred HHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CC--ccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchh
Confidence 99999999999999999 9999999997532 35 8999999999999 010
Q ss_pred ------CcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259 216 ------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV 276 (294)
Q Consensus 216 ------~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV 276 (294)
....++++++++||+|++|+|+|++|+++|+++.| ||++||++||++||++|+|+||+|||
T Consensus 174 ~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV 253 (324)
T 3evt_A 174 DHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDV 253 (324)
T ss_dssp TTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESS
T ss_pred HhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCC
Confidence 11347999999999999999999999999999988 99999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCCC
Q psy5259 277 MIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 277 ~~~EP~~~~~~l~~~~nv 294 (294)
|++||+|+++|||++|||
T Consensus 254 ~~~EPl~~~~pL~~~~nv 271 (324)
T 3evt_A 254 TEPEPLPTDHPLWQRDDV 271 (324)
T ss_dssp CSSSSCCTTCGGGGCSSE
T ss_pred CCCCCCCCCChhhcCCCE
Confidence 999999999999999996
No 12
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=100.00 E-value=3.5e-46 Score=346.39 Aligned_cols=231 Identities=27% Similarity=0.380 Sum_probs=190.4
Q ss_pred CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG 83 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G 83 (294)
|||++... -+.-.+.++++.+.+++..+.. ...+++.+.++++|+++++...++++++|+.+ |+||+|++.++|
T Consensus 1 Mki~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~~~~d~li~~~~~~i~~~~l~~~-~~Lk~I~~~~~G 74 (334)
T 2pi1_A 1 MNVLFTSV-PQEDVPFYQEALKDLSLKIYTT----DVSKVPENELKKAELISVFVYDKLTEELLSKM-PRLKLIHTRSVG 74 (334)
T ss_dssp CEEEECSC-CTTHHHHHHHHTTTSEEEECSS----CGGGSCHHHHHHCSEEEECTTSCBCHHHHTTC-TTCCEEEESSSC
T ss_pred CEEEEEcc-ChhhHHHHHHHhhcCCEEEECC----CCcHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEECCcc
Confidence 48888763 3311345566666667766443 23567888999999999987789999999986 667777777777
Q ss_pred CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259 84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF 163 (294)
Q Consensus 84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~ 163 (294)
+|+||++.++++||.|+|+ |++++.+||||
T Consensus 75 ~d~id~~~~~~~gI~v~n~--------------------------------------------------p~~~~~~vAE~ 104 (334)
T 2pi1_A 75 FDHIDLDYCKKKGILVTHI--------------------------------------------------PAYSPESVAEH 104 (334)
T ss_dssp CTTBCHHHHHHHTCEEECC--------------------------------------------------TTSCHHHHHHH
T ss_pred ccccCHHHHHHCCeEEEEC--------------------------------------------------CCcCcHHHHHH
Confidence 7777666666555555555 88999999999
Q ss_pred HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------------------------c
Q psy5259 164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------E 213 (294)
Q Consensus 164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------------~ 213 (294)
+++++|++.|++..+++.+++|.|..... ..| ++++|+|+||||+ +
T Consensus 105 ~~~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~--~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~ 180 (334)
T 2pi1_A 105 TFAMILTLVKRLKRIEDRVKKLNFSQDSE--ILA--RELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKE 180 (334)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTTCCCCCGG--GCB--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCCccccC--ccc--eeccCceEEEECcCHHHHHHHHHHHHCcCEEEEECCCcchhhHh
Confidence 99999999999999999999999974311 245 8999999999999 1
Q ss_pred CCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCC
Q psy5259 214 LGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280 (294)
Q Consensus 214 ~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~E 280 (294)
.+.++.++++++++||+|++|+|+|++|+++|+++.| ||++||++||++||++|+|+||+||||++|
T Consensus 181 ~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 260 (334)
T 2pi1_A 181 KGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDE 260 (334)
T ss_dssp TTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTH
T ss_pred cCceecCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEeecCCCC
Confidence 2455678999999999999999999999999999988 999999999999999999999999999999
Q ss_pred CC---------------CCCCCCcCCCCC
Q psy5259 281 PM---------------PADHPLVQLDNC 294 (294)
Q Consensus 281 P~---------------~~~~~l~~~~nv 294 (294)
|+ +++||||++|||
T Consensus 261 P~~~~~~~~~~~~~~~~~~~~pL~~~~nv 289 (334)
T 2pi1_A 261 EILILKKYTEGKATDKNLKILELACKDNV 289 (334)
T ss_dssp HHHHTTGGGGTCCCHHHHHHHHHHTSTTE
T ss_pred CCccccccccccccccCccCChhhcCCCE
Confidence 98 578999999996
No 13
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=335.66 Aligned_cols=229 Identities=29% Similarity=0.546 Sum_probs=193.5
Q ss_pred CCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 2 SKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 2 ~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
+++||+++++ ++ +...+.|++ .+++..++ ..+.+++.+.++++|++++++..++++++|+.+ |+||+|++.
T Consensus 25 ~~~~vli~~~-~~--~~~~~~l~~~~~~v~~~~----~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~ 96 (335)
T 2g76_A 25 NLRKVLISDS-LD--PCCRKILQDGGLQVVEKQ----NLSKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRA 96 (335)
T ss_dssp -CCEEEECSC-CC--HHHHHHHHHHTCEEEECC----SCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-SSCCEEEES
T ss_pred cceEEEEcCC-CC--HHHHHHHHhCCCEEEECC----CCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhC-CCCcEEEEC
Confidence 4568999884 76 777788877 46776653 257889999999999999887778999999986 777777777
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
++|+|+||++.++++||.|+|+ |++++.+|
T Consensus 97 ~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------p~~~~~~v 126 (335)
T 2g76_A 97 GTGVDNVDLEAATRKGILVMNT--------------------------------------------------PNGNSLSA 126 (335)
T ss_dssp SSSCTTBCHHHHHHHTCEEECC--------------------------------------------------SSTTHHHH
T ss_pred CCCcchhChHHHHhCCeEEEEC--------------------------------------------------CCccchHH
Confidence 7777777766666555555555 88999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------------- 212 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------------- 212 (294)
|||+++++|++.|++..+.+.+++|.|.... ..| .+++|+|+||||+
T Consensus 127 AE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~---~~~--~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~ 201 (335)
T 2g76_A 127 AELTCGMIMCLARQIPQATASMKDGKWERKK---FMG--TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE 201 (335)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCCCTGG---GCB--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHcCCCCccC---CCC--cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh
Confidence 9999999999999999999999999996421 245 8999999999999
Q ss_pred ---cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259 213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV 276 (294)
Q Consensus 213 ---~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV 276 (294)
..++++.++++++++||+|++|+|++++|+++||++.| ||++||+++|+++|++|+|+||+|||
T Consensus 202 ~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV 281 (335)
T 2g76_A 202 VSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDV 281 (335)
T ss_dssp HHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESC
T ss_pred hhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEee
Confidence 12344568999999999999999999999999998877 99999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCCC
Q psy5259 277 MIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 277 ~~~EP~~~~~~l~~~~nv 294 (294)
|++|| ++++|||++|||
T Consensus 282 ~~~EP-~~~~~L~~~~nv 298 (335)
T 2g76_A 282 FTEEP-PRDRALVDHENV 298 (335)
T ss_dssp CSSSS-CSCCHHHHSTTE
T ss_pred cCCCC-CCCchHHhCCCE
Confidence 99999 567999999996
No 14
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=100.00 E-value=4.1e-45 Score=339.78 Aligned_cols=233 Identities=26% Similarity=0.367 Sum_probs=183.4
Q ss_pred CCeEEEecCCCCCCchhHHHhhc--cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHH-HHhhcC-CCceEEE
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED--MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKE-ALDESG-ENLKVIS 78 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~--~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~-~l~~~~-~~lk~i~ 78 (294)
||||+++.. .+.-.+.++.+.+ ++++..++.. .+ +++.+.++++|++++++..+++++ +|++++ ++||+|+
T Consensus 1 Mmki~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~---~~-~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~ 75 (343)
T 2yq5_A 1 MTKIAMYNV-SPIEVPYIEDWAKKNDVEIKTTDQA---LT-SATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIG 75 (343)
T ss_dssp -CEEEEESC-CGGGHHHHHHHHHHHTCEEEEESSC---CS-TTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEE
T ss_pred CceEEEEec-CcccHHHHHHHHHhCCeEEEECCCC---CC-HHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEE
Confidence 378888772 3322345555543 5688776542 33 567788999999999877899999 999762 3455555
Q ss_pred eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259 79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD 158 (294)
Q Consensus 79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~ 158 (294)
+.++|+|+|| +++++++||.|+|+|++++.
T Consensus 76 ~~~~G~d~id--------------------------------------------------~~~~~~~gI~v~n~p~~~~~ 105 (343)
T 2yq5_A 76 LRIVGFNTIN--------------------------------------------------FDWTKKYNLLVTNVPVYSPR 105 (343)
T ss_dssp ESSSCCTTBC--------------------------------------------------SSTTCC--CEEECCSCSCHH
T ss_pred ECceeecccc--------------------------------------------------hhHHHhCCEEEEECCCCCcH
Confidence 5555555554 45555555666666999999
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhHh-cCCCCccccccccccccCcCCCEEEEEcc-------------------------
Q psy5259 159 AVAEFNIGLAIAVSRRFQQGHNCIA-SGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------- 212 (294)
Q Consensus 159 ~VAE~al~l~l~~~r~~~~~~~~~~-~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------- 212 (294)
+||||+++++|++.|++..+.+.++ +|+|. |... ..| ++++|||+||||+
T Consensus 106 ~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~~-~~~--~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~ 181 (343)
T 2yq5_A 106 AIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPSN-LIS--NEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAY 181 (343)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCGG-GCB--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-cccC-CCc--cccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCCh
Confidence 9999999999999999999999999 89874 2222 455 8999999999999
Q ss_pred ----cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEee
Q psy5259 213 ----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLD 275 (294)
Q Consensus 213 ----~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LD 275 (294)
+.+.++.++++++++||+|++|+|+|++|+++|+++.| ||++||++||++||++|+|+||+||
T Consensus 182 ~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LD 261 (343)
T 2yq5_A 182 NPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLD 261 (343)
T ss_dssp CGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEES
T ss_pred hhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEec
Confidence 11234568999999999999999999999999999988 9999999999999999999999999
Q ss_pred CCCCCC--CCCC-----------CCCcCCCCC
Q psy5259 276 VMIPEP--MPAD-----------HPLVQLDNC 294 (294)
Q Consensus 276 V~~~EP--~~~~-----------~~l~~~~nv 294 (294)
||++|| ++.+ +|||++|||
T Consensus 262 V~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nv 293 (343)
T 2yq5_A 262 TLAGESSYFGHTGLTDSEIPEDYKTLAKMPNV 293 (343)
T ss_dssp CCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTE
T ss_pred ccccCCCccccccccccccccchhHHhcCCCE
Confidence 999999 5555 489999996
No 15
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=100.00 E-value=7.2e-45 Score=340.34 Aligned_cols=232 Identities=26% Similarity=0.390 Sum_probs=181.8
Q ss_pred CCCeEEEecCCCCC------CchhHHHhhccceEEEcCCCCCCCCHHHHHH-HccCCcEEEeCCCCCCCHHHHhhcCCCc
Q psy5259 2 SKPKLLLTRNDYPR------VSPAYDILEDMFDIITYPISEGRMPRDIFIE-KLKGCSALLCNPHQKVDKEALDESGENL 74 (294)
Q Consensus 2 ~k~kvl~~~~~~~~------~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~-~l~~~d~~~~~~~~~~~~~~l~~~~~~l 74 (294)
+++++++..+ .+. .++.++.|++.++++.+.. .+.+++++ .+.++++++.+ .++++++|+++ |+|
T Consensus 26 ~~r~ivll~~-~~~~~~~~~~~~~~~~L~~~~~v~~~~~----~~~~e~~~~~~~~~~~i~~~--~~i~~~~l~~~-p~L 97 (365)
T 4hy3_A 26 TERPLAISAP-EPRSLDLIFSDEARAALHSKYEIVEADP----ENIAGLGDDILGRARYIIGQ--PPLSAETLARM-PAL 97 (365)
T ss_dssp --CCEEEEEC-TTSCHHHHCCHHHHHHHHHHSEEEECCG----GGGGGSCTTHHHHEEEEEEC--CCCCHHHHTTC-TTC
T ss_pred CCCCEEEEcC-CcccccccCCHHHHHHHhCCcEEEECCC----CChHHHHHHhhCCeEEEEeC--CCCCHHHHhhC-CCC
Confidence 4556777775 542 1447888999899985432 34555554 34678887753 68999999986 777
Q ss_pred eEEEec-cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeC
Q psy5259 75 KVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG 153 (294)
Q Consensus 75 k~i~~~-~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~ 153 (294)
|+|+.. ++|+|+||+++++++||.|+|+ |
T Consensus 98 k~I~~~~~~G~d~iD~~~a~~~GI~V~n~--------------------------------------------------~ 127 (365)
T 4hy3_A 98 RSILNVESNLLNNMPYEVLFQRGIHVVTT--------------------------------------------------G 127 (365)
T ss_dssp CEEECCSSSCCSCSCTTHHHHSCCEEEEC--------------------------------------------------G
T ss_pred eEEEEecccccCcccHHHHhcCCeEEEeC--------------------------------------------------C
Confidence 777643 5666666666665555555544 8
Q ss_pred CCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------
Q psy5259 154 PVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------- 212 (294)
Q Consensus 154 ~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------------- 212 (294)
++++.+||||+++++|++.|++..+.+.+++|+|.........| ++++|||+||||+
T Consensus 128 ~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~--~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~ 205 (365)
T 4hy3_A 128 QVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASA--RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVF 205 (365)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSC--CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEE
T ss_pred CccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccc--cccCCCEEEEecCCcccHHHHHhhhhCCCEEEEE
Confidence 99999999999999999999999999999999953111111345 8999999999999
Q ss_pred ----------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCc
Q psy5259 213 ----------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKI 269 (294)
Q Consensus 213 ----------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i 269 (294)
..++++.++++++++||+|++|+|+|++|+++|+++.| ||++||++||++||++|+|
T Consensus 206 d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i 285 (365)
T 4hy3_A 206 DPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHI 285 (365)
T ss_dssp CSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSS
T ss_pred CCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCc
Confidence 23455678999999999999999999999999999998 9999999999999999999
Q ss_pred eEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259 270 GGAGLDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 270 ~ga~LDV~~~EP~~~~~~l~~~~nv 294 (294)
+ |+||||++||+++++|||++|||
T Consensus 286 ~-aaLDV~~~EPl~~~~pL~~~~nv 309 (365)
T 4hy3_A 286 V-AASDVYPEEPLPLDHPVRSLKGF 309 (365)
T ss_dssp E-EEESCCSSSSCCTTCGGGTCTTE
T ss_pred e-EEeeCCCCCCCCCCChhhcCCCE
Confidence 8 99999999999999999999996
No 16
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-43 Score=326.36 Aligned_cols=232 Identities=34% Similarity=0.618 Sum_probs=197.0
Q ss_pred CeEEEecCCCCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
||||++.+ ++ ++.++.|++. +++..+... ..+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++
T Consensus 1 ~~vl~~~~-~~--~~~~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~i~~~~~ 74 (311)
T 2cuk_A 1 MRVLVTRT-LP--GKALDRLRERGLEVEVHRGL--FLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSV 74 (311)
T ss_dssp CEEEESSC-CS--SSTTHHHHHTTCEEEECCSS--CCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHS-TTCCEEECSSS
T ss_pred CEEEEeCC-CC--HHHHHHHHhcCCeEEEecCC--CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEECCc
Confidence 68999884 77 7778888886 888765442 357889999999999999886678999999986 77888888888
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE 162 (294)
|+|+||++.++++||.|+|+ |++++.+|||
T Consensus 75 G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~~~~vAE 104 (311)
T 2cuk_A 75 GVDHVDLEAARERGIRVTHT--------------------------------------------------PGVLTEATAD 104 (311)
T ss_dssp CCTTBCHHHHHTTTCEEECC--------------------------------------------------CSTTHHHHHH
T ss_pred CccccCHHHHHhCCcEEEEC--------------------------------------------------CCCChHHHHH
Confidence 87777777777666666555 8899999999
Q ss_pred HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC--------------C
Q psy5259 163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG--------------A 216 (294)
Q Consensus 163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~--------------~ 216 (294)
|+++++|++.|++..+++.+++|.|..+......| ++++|+|+||||+ .++ .
T Consensus 105 ~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~--~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~ 182 (311)
T 2cuk_A 105 LTLALLLAVARRVVEGAAYARDGLWKAWHPELLLG--LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPY 182 (311)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB--CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSSS
T ss_pred HHHHHHHHHHcChHHHHHHHHcCCCCccccccccC--cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCccccc
Confidence 99999999999999999999999996432222345 8999999999999 111 2
Q ss_pred cccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCC
Q psy5259 217 QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP 283 (294)
Q Consensus 217 ~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~ 283 (294)
.+.++++++++||+|++|+|++++|+++|+++.| ||.++|+++|.++|+ |+|+||+||||++||++
T Consensus 183 ~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~ 261 (311)
T 2cuk_A 183 PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLP 261 (311)
T ss_dssp CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCC
T ss_pred ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCC
Confidence 3468999999999999999999999999997776 999999999999999 99999999999999999
Q ss_pred CCCCCcCCCCC
Q psy5259 284 ADHPLVQLDNC 294 (294)
Q Consensus 284 ~~~~l~~~~nv 294 (294)
.++|||++|||
T Consensus 262 ~~~~L~~~~nv 272 (311)
T 2cuk_A 262 PGHPLYALPNA 272 (311)
T ss_dssp TTSGGGGCTTE
T ss_pred CCChhhhCCCE
Confidence 99999999996
No 17
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=100.00 E-value=2.6e-43 Score=325.59 Aligned_cols=233 Identities=30% Similarity=0.462 Sum_probs=196.0
Q ss_pred CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC-ceEEEeccc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN-LKVISTFSV 82 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~-lk~i~~~~~ 82 (294)
+||+++. .++ ++.++.|++.+++....... ..+.+++.+.++++|+++++...++++++|+.+ |+ ||+|++.++
T Consensus 2 ~~vl~~~-~~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~Lk~I~~~~~ 76 (320)
T 1gdh_A 2 KKILITW-PLP--EAAMARARESYDVIAHGDDP-KITIDEMIETAKSVDALLITLNEKCRKEVIDRI-PENIKCISTYSI 76 (320)
T ss_dssp CEEEESS-CCC--HHHHHHHHTTSEEEECCSTT-CCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHS-CTTCCEEEEESS
T ss_pred cEEEEcC-CCC--HHHHHHHHhcCCEEEecCCC-CCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhC-CccceEEEECCc
Confidence 6899988 477 78888998877877654322 357889999999999999886678999999987 56 777777777
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE 162 (294)
|+|+||++.++++||.|+|+ |++++.+|||
T Consensus 77 G~d~id~~~~~~~gi~v~n~--------------------------------------------------p~~~~~~vAE 106 (320)
T 1gdh_A 77 GFDHIDLDACKARGIKVGNA--------------------------------------------------PHGVTVATAE 106 (320)
T ss_dssp CCTTBCHHHHHHTTCEEECC--------------------------------------------------CCSCHHHHHH
T ss_pred ccccccHHHHHhCCcEEEEc--------------------------------------------------CCCCHHHHHH
Confidence 77777777666666655555 8899999999
Q ss_pred HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------cC-------
Q psy5259 163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------EL------- 214 (294)
Q Consensus 163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~~------- 214 (294)
|+++++|++.|++..+++.+++|.|..+......| .+++|+|+||||+ +.
T Consensus 107 ~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~--~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~ 184 (320)
T 1gdh_A 107 IAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVG--EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSD 184 (320)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHcCCCCccccccccC--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChhh
Confidence 99999999999999999999999996432222345 8999999999999 21
Q ss_pred ----CCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259 215 ----GAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV 276 (294)
Q Consensus 215 ----~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV 276 (294)
+..+. ++++++++||+|++|+|++++|+++|+++.| ||.+||+++|.++|++|+|+||+|||
T Consensus 185 ~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv 264 (320)
T 1gdh_A 185 EASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 264 (320)
T ss_dssp HHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESC
T ss_pred hhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeC
Confidence 22234 7999999999999999999999999998776 99999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCCC
Q psy5259 277 MIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 277 ~~~EP~~~~~~l~~~~nv 294 (294)
|++|| +.++|||++|||
T Consensus 265 ~~~eP-~~~~~L~~~~nv 281 (320)
T 1gdh_A 265 FAGEP-NINEGYYDLPNT 281 (320)
T ss_dssp CTTTT-SCCTTGGGCTTE
T ss_pred CCCCC-CCCChhhhCCCE
Confidence 99999 888999999996
No 18
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=100.00 E-value=1e-42 Score=323.06 Aligned_cols=238 Identities=41% Similarity=0.653 Sum_probs=202.3
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhcc--ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILEDM--FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIS 78 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~~--~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~ 78 (294)
|+||||+++. .++ +..++.|++. +++..++... ..+.+++.+.++++|++++++..++++++|+.++|+||+|+
T Consensus 6 ~~~~~il~~~-~~~--~~~~~~l~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~ 81 (330)
T 2gcg_A 6 VRLMKVFVTR-RIP--AEGRVALARAADCEVEQWDSDE-PIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS 81 (330)
T ss_dssp -CCEEEEESS-CCC--HHHHHHHHHCTTEEEEECCSSS-CCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEE
T ss_pred CCCCEEEEEC-CCC--HHHHHHHHhcCCceEEEecCCC-CCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEE
Confidence 3578999988 477 7888888876 7887665322 35789999999999999987677899999998767888888
Q ss_pred eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259 79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD 158 (294)
Q Consensus 79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~ 158 (294)
+.++|+|++|++.++++||.|+|+ |++++.
T Consensus 82 ~~~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~~~ 111 (330)
T 2gcg_A 82 TMSVGIDHLALDEIKKRGIRVGYT--------------------------------------------------PDVLTD 111 (330)
T ss_dssp ESSSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CSTTHH
T ss_pred ECCcccccccHHHHHhCCceEEeC--------------------------------------------------CCCChH
Confidence 888888888887777666666666 888999
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------
Q psy5259 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------------------- 212 (294)
Q Consensus 159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------------------- 212 (294)
+||||+++++|++.|++..+.+.+++|.|..+......| +++.|+++||||+
T Consensus 112 ~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~--~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~ 189 (330)
T 2gcg_A 112 TTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCG--YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP 189 (330)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCB--CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccC--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 999999999999999999999999999997543322346 8999999999999
Q ss_pred ------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEE
Q psy5259 213 ------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAG 273 (294)
Q Consensus 213 ------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~ 273 (294)
..+....++++++++||+|++|+|.+++|+++|+++.| ||.++|+++|.++|++|++.||+
T Consensus 190 ~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~ 269 (330)
T 2gcg_A 190 RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAG 269 (330)
T ss_dssp CHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEE
T ss_pred chhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEE
Confidence 12333458999999999999999999999999997665 99999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCcCCCCC
Q psy5259 274 LDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 274 LDV~~~EP~~~~~~l~~~~nv 294 (294)
||||++||+++++||+++|||
T Consensus 270 lDv~~~epl~~~~~l~~~~nv 290 (330)
T 2gcg_A 270 LDVTSPEPLPTNHPLLTLKNC 290 (330)
T ss_dssp ESCCSSSSCCTTCGGGGCTTE
T ss_pred eCCCCCCCCCCCChhhcCCCE
Confidence 999999999999999999995
No 19
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-43 Score=322.40 Aligned_cols=226 Identities=24% Similarity=0.406 Sum_probs=193.2
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS 81 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~ 81 (294)
+|||+++.+ ++ +...+.|++ .+++.. .. ..+.+++.+.++++|++++++..++++++|+.+ |+||+|++.+
T Consensus 5 ~mkil~~~~-~~--~~~~~~l~~~~~~v~~-~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~ 76 (313)
T 2ekl_A 5 TVKALITDP-ID--EILIKTLREKGIQVDY-MP---EISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG-KKLKIIARAG 76 (313)
T ss_dssp CCEEEECSC-CC--HHHHHHHHHTTCEEEE-CT---TCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-TTCCEEEECS
T ss_pred ceEEEEECC-CC--HHHHHHHHhCCcEEEe-CC---CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEEcC
Confidence 679999984 77 777888887 467753 22 357889999999999999876678999999986 7777777777
Q ss_pred ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259 82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 161 (294)
Q Consensus 82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA 161 (294)
+|+|++|++.++++||.|+|+ |++++.+||
T Consensus 77 ~G~d~id~~~~~~~gi~v~n~--------------------------------------------------~g~~~~~vA 106 (313)
T 2ekl_A 77 IGLDNIDTEEAEKRNIKVVYA--------------------------------------------------PGASTDSAV 106 (313)
T ss_dssp SCCTTBCHHHHHHTTCEEECC--------------------------------------------------TTTTHHHHH
T ss_pred CCCCccCHHHHHhCCeEEEeC--------------------------------------------------CCCCchHHH
Confidence 777777777666666655555 889999999
Q ss_pred HHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-----------------------------
Q psy5259 162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------- 212 (294)
Q Consensus 162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------- 212 (294)
||+++++|++.|++..+++.+++|.|.. ..+ .++.|+|+||||+
T Consensus 107 E~~~~~~L~~~R~~~~~~~~~~~g~w~~-----~~~--~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~ 179 (313)
T 2ekl_A 107 ELTIGLMIAAARKMYTSMALAKSGIFKK-----IEG--LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK 179 (313)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTCCCC-----CCC--CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHcCCCCC-----CCC--CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH
Confidence 9999999999999999999999999952 345 8999999999999
Q ss_pred --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
..++.+.++++++++||+|++|+|++++|+++|+++.| ||+++|+++|.++|++|+|+||+||||
T Consensus 180 ~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~ 259 (313)
T 2ekl_A 180 AEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVF 259 (313)
T ss_dssp HHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCC
T ss_pred HHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecC
Confidence 12344568999999999999999999999999998877 999999999999999999999999999
Q ss_pred CCCCCCCCC---CCcCCCCC
Q psy5259 278 IPEPMPADH---PLVQLDNC 294 (294)
Q Consensus 278 ~~EP~~~~~---~l~~~~nv 294 (294)
++||++ ++ |||++|||
T Consensus 260 ~~eP~~-~~~~~~L~~~~nv 278 (313)
T 2ekl_A 260 WNEPPK-EEWELELLKHERV 278 (313)
T ss_dssp SSSSCC-SHHHHHHHHSTTE
T ss_pred CCCCCC-CcccchHhhCCCE
Confidence 999988 56 99999996
No 20
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=100.00 E-value=7.1e-43 Score=324.03 Aligned_cols=232 Identities=29% Similarity=0.475 Sum_probs=193.2
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHH-HHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEe
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDI-FIEKLKGCSALLCNPHQKVDKEALDESGENLKVIST 79 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~-~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~ 79 (294)
|+||+||++.+ ++ +..++.|++.+++..+... .+.++ +.+.++++|++++++..++++++|+.+ |+||+|++
T Consensus 21 m~~~~vl~~~~-~~--~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~ 93 (333)
T 3ba1_A 21 MEAIGVLMMCP-MS--TYLEQELDKRFKLFRYWTQ---PAQRDFLALQAESIRAVVGNSNAGADAELIDAL-PKLEIVSS 93 (333)
T ss_dssp -CCCEEEECSC-CC--HHHHHHHHHHSEEEEGGGC---SSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHC-TTCCEEEE
T ss_pred CCCCEEEEeCC-CC--HHHHHHHHhcCCEEEecCC---CChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhC-CCCcEEEE
Confidence 77899999984 77 8888999888888765432 24555 556689999999887778999999986 77777777
Q ss_pred ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259 80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 159 (294)
Q Consensus 80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~ 159 (294)
.++|+|+||+++++++||.|+|+ |++++.+
T Consensus 94 ~~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------pg~~~~~ 123 (333)
T 3ba1_A 94 FSVGLDKVDLIKCEEKGVRVTNT--------------------------------------------------PDVLTDD 123 (333)
T ss_dssp SSSCCTTBCHHHHHHHTCEEECC--------------------------------------------------CSTTHHH
T ss_pred cCccccccCHHHHHhCCcEEEEC--------------------------------------------------CCcchHH
Confidence 77777777776666555555555 8899999
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cC-------------
Q psy5259 160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------EL------------- 214 (294)
Q Consensus 160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~------------- 214 (294)
||||+++++|++.|++..+.+.+++|.|... ....| ++++|+++||||+ .+
T Consensus 124 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~--~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~ 199 (333)
T 3ba1_A 124 VADLAIGLILAVLRRICECDKYVRRGAWKFG--DFKLT--TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKP 199 (333)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTGGGGC--CCCCC--CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc--ccccc--cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchh
Confidence 9999999999999999999999999999642 11345 8999999999999 11
Q ss_pred --CCc-ccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259 215 --GAQ-LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI 278 (294)
Q Consensus 215 --~~~-~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~ 278 (294)
+.. ..++++++++||+|++|+|++++|+++|+++.| ||.++|+++|.++|++|+++||+||||+
T Consensus 200 ~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~ 279 (333)
T 3ba1_A 200 NTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE 279 (333)
T ss_dssp TCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred ccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence 122 358999999999999999999999999998776 9999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCCCC
Q psy5259 279 PEPMPADHPLVQLDNC 294 (294)
Q Consensus 279 ~EP~~~~~~l~~~~nv 294 (294)
+||++. +||+++|||
T Consensus 280 ~EP~~~-~~L~~~~nv 294 (333)
T 3ba1_A 280 REPEVP-EKLFGLENV 294 (333)
T ss_dssp TTTCCC-GGGGGCTTE
T ss_pred CCCCCc-chhhcCCCE
Confidence 999876 999999996
No 21
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=100.00 E-value=1.6e-43 Score=332.20 Aligned_cols=233 Identities=24% Similarity=0.391 Sum_probs=188.2
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHhhcCCCceEEEe
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVIST 79 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~~~lk~i~~ 79 (294)
||+||..+. .. ....+.|++ .+++..++.. ..+.+++.+.++++|+++++. ..++++++|+.+ |+||+|++
T Consensus 17 ~~~vl~~d~-~~--~~~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~-~~Lk~I~~ 90 (364)
T 2j6i_A 17 EEKLYGCTE-NK--LGIANWLKDQGHELITTSDK--EGGNSVLDQHIPDADIIITTPFHPAYITKERIDKA-KKLKLVVV 90 (364)
T ss_dssp CTTCTTBTT-TG--GGCHHHHHHTTCEEEEESCC--SSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHC-TTCCEEEE
T ss_pred CceEEEecC-cc--HHHHHHHHhCCCEEEEcCCC--CCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhC-CCCeEEEE
Confidence 456666553 33 445566666 5788776543 235678899999999999864 246899999986 77777777
Q ss_pred ccccCcccChhhHhhC--CcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCch
Q psy5259 80 FSVGHDHLHLDQIKSR--GIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS 157 (294)
Q Consensus 80 ~~~G~d~id~~~~~~~--gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~ 157 (294)
.++|+|+||++.++++ ||.|+|+ |++++
T Consensus 91 ~~~G~d~id~~~~~~~~~gI~V~n~--------------------------------------------------pg~~~ 120 (364)
T 2j6i_A 91 AGVGSDHIDLDYINQTGKKISVLEV--------------------------------------------------TGSNV 120 (364)
T ss_dssp SSSCCTTBCHHHHHHHTCCCEEEEC--------------------------------------------------TTSSH
T ss_pred CCcccccccHHHHHhcCCCEEEEEC--------------------------------------------------CCcCc
Confidence 7777777777766655 5555554 88999
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCCC---------
Q psy5259 158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELGA--------- 216 (294)
Q Consensus 158 ~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~~--------- 216 (294)
.+||||+++++|++.|++..+++.+++|.|..... ...+ ++++|+|+||||+ .++.
T Consensus 121 ~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~--~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~ 197 (364)
T 2j6i_A 121 VSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAI-AKDA--YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ 197 (364)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHH-HTTC--CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcc-cCCc--ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 99999999999999999999999999999963211 1235 8999999999999 2222
Q ss_pred ------------cc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCce
Q psy5259 217 ------------QL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 217 ------------~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ 270 (294)
.. .++++++++||+|++|+|+|++|+++|+++.| ||++||++||+++|++|+|+
T Consensus 198 ~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~ 277 (364)
T 2j6i_A 198 ALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLR 277 (364)
T ss_dssp CCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred ccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCc
Confidence 12 37999999999999999999999999998877 99999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCcCC--C---CC
Q psy5259 271 GAGLDVMIPEPMPADHPLVQL--D---NC 294 (294)
Q Consensus 271 ga~LDV~~~EP~~~~~~l~~~--~---nv 294 (294)
||+||||++||+|.++|||++ | ||
T Consensus 278 gA~LDVf~~EP~~~~~pL~~~~~~~~~nv 306 (364)
T 2j6i_A 278 GYGGDVWFPQPAPKDHPWRDMRNKYGAGN 306 (364)
T ss_dssp EEEESCCSSSSCCTTCHHHHCCCTTSCCE
T ss_pred EEEEecCCCCCCCCCChHHhccCCccCcE
Confidence 999999999999999999999 9 86
No 22
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=100.00 E-value=2.7e-43 Score=327.18 Aligned_cols=230 Identities=22% Similarity=0.253 Sum_probs=184.7
Q ss_pred CeEEEecCCCCCCchhHHHhhcc---ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC--ceEEE
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDM---FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN--LKVIS 78 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~---~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~--lk~i~ 78 (294)
|||+++.+ .+..++.++.|.+. +++..++.. ..+++.+.++++|++++++..++++++|+++ |+ ||+|+
T Consensus 2 mkil~~~~-~~~~~~~~~~l~~~~p~~~v~~~~~~----~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~ 75 (333)
T 1j4a_A 2 TKIFAYAI-REDEKPFLKEWEDAHKDVEVEYTDKL----LTPETVALAKGADGVVVYQQLDYIAETLQAL-ADNGITKMS 75 (333)
T ss_dssp CEEEECSC-CGGGHHHHHHHHHTCTTSEEEECSSC----CCTTTGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEE
T ss_pred cEEEEEec-CccCHHHHHHHHhhCCCcEEEECCCC----CcHHHHHHhcCCcEEEEcCCCCCCHHHHHhc-cccCCeEEE
Confidence 68888753 33224566777653 477665442 2346777889999999886679999999987 44 77777
Q ss_pred eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259 79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD 158 (294)
Q Consensus 79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~ 158 (294)
+.++|+|+||+++++++||.|+|+ |++++.
T Consensus 76 ~~~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------p~~~~~ 105 (333)
T 1j4a_A 76 LRNVGVDNIDMAKAKELGFQITNV--------------------------------------------------PVYSPN 105 (333)
T ss_dssp ESSSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CCSCHH
T ss_pred ECCcccccccHHHHHhCCCEEEeC--------------------------------------------------CCCCch
Confidence 777777777666666555555555 889999
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cC------------
Q psy5259 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------EL------------ 214 (294)
Q Consensus 159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~------------ 214 (294)
+||||+++++|++.|++..+++.+++|.|.. .. ..| ++++|+|+||||+ .+
T Consensus 106 ~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~-~~--~~~--~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~ 180 (333)
T 1j4a_A 106 AIAEHAAIQAARILRQDKAMDEKVARHDLRW-AP--TIG--REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN 180 (333)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTBCCC-TT--CCB--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHcCCCcc-CC--ccc--ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 9999999999999999999999999999952 21 345 8999999999999 11
Q ss_pred -----CCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEee
Q psy5259 215 -----GAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLD 275 (294)
Q Consensus 215 -----~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LD 275 (294)
..++. ++++++++||+|++|+|++++|+++|+++.| ||++||++||++||++|+|+||+||
T Consensus 181 ~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LD 260 (333)
T 1j4a_A 181 PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMD 260 (333)
T ss_dssp HHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEES
T ss_pred hhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEe
Confidence 12344 8999999999999999999999999998877 9999999999999999999999999
Q ss_pred CCCCCC--CCCCC-----------CCcCCCCC
Q psy5259 276 VMIPEP--MPADH-----------PLVQLDNC 294 (294)
Q Consensus 276 V~~~EP--~~~~~-----------~l~~~~nv 294 (294)
||++|| +|+++ |||++|||
T Consensus 261 V~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nv 292 (333)
T 1j4a_A 261 VYEGEVGIFNEDWEGKEFPDARLADLIARPNV 292 (333)
T ss_dssp CCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTE
T ss_pred cCCCCCCccccccccccCCccchhhHHhCCCE
Confidence 999999 45544 69999996
No 23
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=100.00 E-value=7.6e-43 Score=329.56 Aligned_cols=218 Identities=24% Similarity=0.435 Sum_probs=180.1
Q ss_pred HHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCc
Q psy5259 21 DILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGI 97 (294)
Q Consensus 21 ~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI 97 (294)
+.|++ +++++..... ..+.+++.+.++++|++++.. ..++++++|+++ |+||+|++.++|+|+||+++++++||
T Consensus 61 ~~l~~~g~~v~~~~~~--~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~iD~~aa~~~gI 137 (393)
T 2nac_A 61 KYLESNGHTLVVTSDK--DGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNV 137 (393)
T ss_dssp HHHHHTTCEEEEESCC--SSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred HHHHhCCCEEEEecCC--CCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhC-CCCcEEEEcCccccccCHHHHhcCCE
Confidence 45665 4677654332 234568889999999999863 347999999986 77877777777777777776666666
Q ss_pred EEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchh
Q psy5259 98 RVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177 (294)
Q Consensus 98 ~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~ 177 (294)
.|+|+ +++++.+||||+++++|++.|++..
T Consensus 138 ~V~n~--------------------------------------------------~g~~~~~VAE~al~liL~~~R~~~~ 167 (393)
T 2nac_A 138 TVAEV--------------------------------------------------TYCNSISVAEHVVMMILSLVRNYLP 167 (393)
T ss_dssp EEEEC--------------------------------------------------TTTTHHHHHHHHHHHHHHHHTTHHH
T ss_pred EEEeC--------------------------------------------------CCcccHHHHHHHHHHHHHHHhccHH
Confidence 55555 8889999999999999999999999
Q ss_pred hhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------------cCCCcc-cCHHHH
Q psy5259 178 GHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------------ELGAQL-VPLDTL 224 (294)
Q Consensus 178 ~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------------------------~~~~~~-~~l~el 224 (294)
+++.+++|.|..... ...+ .+++|||+||||+ ..+... .+++++
T Consensus 168 ~~~~~~~g~W~~~~~-~~~~--~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~el 244 (393)
T 2nac_A 168 SHEWARKGGWNIADC-VSHA--YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDM 244 (393)
T ss_dssp HHHHHHTTCCCHHHH-HTTC--CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHH
T ss_pred HHHHHHcCCCCcccc-ccCC--ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHH
Confidence 999999999964211 1234 7999999999999 112333 479999
Q ss_pred hccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCC
Q psy5259 225 CAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL 291 (294)
Q Consensus 225 l~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~ 291 (294)
+++||+|++|+|+|++|+++|+++.| ||++||++||+++|++|+|+||+||||++||+++++|||++
T Consensus 245 l~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~ 324 (393)
T 2nac_A 245 YPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTM 324 (393)
T ss_dssp GGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTS
T ss_pred HhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcC
Confidence 99999999999999999999998877 99999999999999999999999999999999999999999
Q ss_pred CCC
Q psy5259 292 DNC 294 (294)
Q Consensus 292 ~nv 294 (294)
|||
T Consensus 325 ~nv 327 (393)
T 2nac_A 325 PYN 327 (393)
T ss_dssp TTB
T ss_pred CCE
Confidence 996
No 24
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=100.00 E-value=1.3e-42 Score=322.23 Aligned_cols=232 Identities=26% Similarity=0.343 Sum_probs=185.9
Q ss_pred CeEEEecCCCCCCchhHHHhhcc--ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC--ceEEEe
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDM--FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN--LKVIST 79 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~--~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~--lk~i~~ 79 (294)
|||+++.. .+..++.++.|.+. +++..++. ..+.+++.+.++++|++++++..++++++|+++ |+ ||+|++
T Consensus 1 mki~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~ 75 (331)
T 1xdw_A 1 MKVLCYGV-RDVELPIFEACNKEFGYDIKCVPD---YLNTKETAEMAAGFDAVILRGNCFANKQNLDIY-KKLGVKYILT 75 (331)
T ss_dssp CEEEECSC-CTTTHHHHHHHGGGTCCEEEECSC---CSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHH-HHHTCCEEEE
T ss_pred CEEEEEec-CccCHHHHHHHHHhcCeEEEECCC---CCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhC-cccCceEEEE
Confidence 47888652 33225667777653 45655443 245588888999999999987779999999987 55 777777
Q ss_pred ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259 80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 159 (294)
Q Consensus 80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~ 159 (294)
.++|+|+||++.++++||.|+|+ |++++.+
T Consensus 76 ~~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------p~~~~~~ 105 (331)
T 1xdw_A 76 RTAGTDHIDKEYAKELGFPMAFV--------------------------------------------------PRYSPNA 105 (331)
T ss_dssp SSSCCTTBCHHHHHHTTCCEECC--------------------------------------------------CCCCHHH
T ss_pred ccccccccCHHHHHhCCcEEEeC--------------------------------------------------CCCCcHH
Confidence 77777766666666555555555 8899999
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------cC----
Q psy5259 160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------EL---- 214 (294)
Q Consensus 160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~~---- 214 (294)
||||+++++|++.|++..+.+.+++|.|.... . ..| +++.|+|+||||+ +.
T Consensus 106 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~-~~~--~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~ 181 (331)
T 1xdw_A 106 IAELAVTQAMMLLRHTAYTTSRTAKKNFKVDA-F-MFS--KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIK 181 (331)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCS-T-TCC--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCcccc-C-cCc--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccH
Confidence 99999999999999999999999999995211 1 345 8999999999999 10
Q ss_pred ----CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 215 ----GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 215 ----~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
...+.++++++++||+|++|+|+|++|+++|+++.| ||++||++||+++|++|+|+||+||||
T Consensus 182 ~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~ 261 (331)
T 1xdw_A 182 GIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVL 261 (331)
T ss_dssp SCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred HHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecC
Confidence 123458999999999999999999999999998887 999999999999999999999999999
Q ss_pred CCCCC--CCC-------C----CCcCC-CCC
Q psy5259 278 IPEPM--PAD-------H----PLVQL-DNC 294 (294)
Q Consensus 278 ~~EP~--~~~-------~----~l~~~-~nv 294 (294)
++||+ +++ + |||++ |||
T Consensus 262 ~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nv 292 (331)
T 1xdw_A 262 DGEASVFGKDLEGQKLENPLFEKLVDLYPRV 292 (331)
T ss_dssp TTGGGTTTCCCTTSCCSSHHHHHHHHTTTTE
T ss_pred CCCCCcccccccccccCccchHHHHhCCCCE
Confidence 99994 333 3 79999 996
No 25
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=100.00 E-value=1.2e-42 Score=322.73 Aligned_cols=231 Identities=22% Similarity=0.297 Sum_probs=183.4
Q ss_pred CeEEEecCCCCCCchhHHHhhc--cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC--ceEEEe
Q psy5259 4 PKLLLTRNDYPRVSPAYDILED--MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN--LKVIST 79 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~--~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~--lk~i~~ 79 (294)
|||+++.. .+..++.++.|.+ .+++..++.. ..+++.+.++++|++++++..++++++|+.+ |+ ||+|++
T Consensus 1 Mkil~~~~-~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~ 74 (333)
T 1dxy_A 1 MKIIAYGA-RVDEIQYFKQWAKDTGNTLEYHTEF----LDENTVEWAKGFDGINSLQTTPYAAGVFEKM-HAYGIKFLTI 74 (333)
T ss_dssp CEEEECSC-CTTTHHHHHHHHHHHCCEEEECSSC----CCTTGGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEE
T ss_pred CEEEEEec-cccCHHHHHHHHHhCCeEEEEcCCC----ChHHHHHHhcCCeEEEEcCCCCCCHHHHHhC-cccCceEEEE
Confidence 47888652 2322556677755 4566655442 2346777899999999987779999999987 44 777777
Q ss_pred ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259 80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 159 (294)
Q Consensus 80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~ 159 (294)
.++|+|+||++.++++||.|+|+ |++++.+
T Consensus 75 ~~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------p~~~~~~ 104 (333)
T 1dxy_A 75 RNVGTDNIDMTAMKQYGIRLSNV--------------------------------------------------PAYSPAA 104 (333)
T ss_dssp SSSCCTTBCHHHHHHTTCEEECC--------------------------------------------------TTSCHHH
T ss_pred cCcccCccCHHHHHhCCCEEEeC--------------------------------------------------CCCCchH
Confidence 77777777666666555555555 8899999
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cC-------------
Q psy5259 160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------EL------------- 214 (294)
Q Consensus 160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~------------- 214 (294)
||||+++++|++.|++..+++.+++|.|..... ..| ++++|+|+||||+ .+
T Consensus 105 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~--~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~ 180 (333)
T 1dxy_A 105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT--FIG--KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK 180 (333)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC--CCC--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHcCCcccccC--CCc--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence 999999999999999999999999999842011 345 8999999999999 01
Q ss_pred ----CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 215 ----GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 215 ----~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
...+.++++++++||+|++|+|+|++|+++||++.| ||++||++||+++|++|+|+||+||||
T Consensus 181 ~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~ 260 (333)
T 1dxy_A 181 GDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 260 (333)
T ss_dssp SCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSC
T ss_pred hhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecC
Confidence 123458999999999999999999999999998887 999999999999999999999999999
Q ss_pred CCCCC--C--------CC---CCCcCCCCC
Q psy5259 278 IPEPM--P--------AD---HPLVQLDNC 294 (294)
Q Consensus 278 ~~EP~--~--------~~---~~l~~~~nv 294 (294)
++||+ + ++ +|||++|||
T Consensus 261 ~~EP~~~~~~~~~~~~~~~~~~pL~~~~nv 290 (333)
T 1dxy_A 261 EYETEDLLNLAKHGSFKDPLWDELLGMPNV 290 (333)
T ss_dssp TTHHHHHHHHHHHSSCCCHHHHHHHTCTTE
T ss_pred CCCCCcccccccccccCccchhHHhcCCCE
Confidence 99993 2 12 589999996
No 26
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=100.00 E-value=2e-42 Score=318.67 Aligned_cols=222 Identities=18% Similarity=0.234 Sum_probs=177.5
Q ss_pred CCCeEEEecCCCCCCchhHHHhhcc---ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259 2 SKPKLLLTRNDYPRVSPAYDILEDM---FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIS 78 (294)
Q Consensus 2 ~k~kvl~~~~~~~~~~~~~~~l~~~---~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~ 78 (294)
++|||+++.+ .+..++..+.|++. .++..++. + ..+++|+++++. .++++|+. |+||+|+
T Consensus 2 ~~mkil~~~~-~~~~~~~~~~l~~~~p~~~~~~~~~-------~----~~~~ad~~i~~~---~~~~~l~~--~~Lk~I~ 64 (315)
T 3pp8_A 2 NAMEIIFYHP-TFNAAWWVNALEKALPHARVREWKV-------G----DNNPADYALVWQ---PPVEMLAG--RRLKAVF 64 (315)
T ss_dssp CCEEEEEECS-SSCHHHHHHHHHHHSTTEEEEECCT-------T----CCSCCSEEEESS---CCHHHHTT--CCCSEEE
T ss_pred CceEEEEEcC-CCchHHHHHHHHHHCCCCEEEecCC-------C----CccCcEEEEECC---CCHHHhCC--CCceEEE
Confidence 3589999885 33224566777763 35544421 1 356999999873 47999986 8898888
Q ss_pred eccccCccc-C-hhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCC-
Q psy5259 79 TFSVGHDHL-H-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV- 155 (294)
Q Consensus 79 ~~~~G~d~i-d-~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~- 155 (294)
+.++|+|+| | +++. ..+.++||.|+|++++
T Consensus 65 ~~~aG~d~i~d~~~a~-----------------------------------------------~~~~~~gi~v~~~~~~~ 97 (315)
T 3pp8_A 65 VLGAGVDAILSKLNAH-----------------------------------------------PEMLDASIPLFRLEDTG 97 (315)
T ss_dssp ESSSCCHHHHHHHHHC-----------------------------------------------TTSSCTTSCEEEC--CC
T ss_pred ECCEecccccchhhhh-----------------------------------------------hhhhcCCCEEEEcCCCC
Confidence 888888888 6 6650 0123445555555654
Q ss_pred chHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC--------
Q psy5259 156 SSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG-------- 215 (294)
Q Consensus 156 ~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~-------- 215 (294)
++.+||||+++++|++.|++..+.+.+++|.|... .+ ++++|||+||||+ .+|
T Consensus 98 ~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~--~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr 170 (315)
T 3pp8_A 98 MGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL-----PE--YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSR 170 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CC--CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC-----CC--CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcC
Confidence 48999999999999999999999999999999752 34 8999999999999 111
Q ss_pred -------Cc----ccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceE
Q psy5259 216 -------AQ----LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 216 -------~~----~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~g 271 (294)
.. ..++++++++||+|++|+|+|++|+|+||++.| ||++||++||++||++|+|+|
T Consensus 171 ~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g 250 (315)
T 3pp8_A 171 SRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKG 250 (315)
T ss_dssp SCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEE
T ss_pred CchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccE
Confidence 11 147999999999999999999999999999988 999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCcCCCCC
Q psy5259 272 AGLDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 272 a~LDV~~~EP~~~~~~l~~~~nv 294 (294)
|+||||++||+|+++|||++|||
T Consensus 251 A~lDV~~~EPl~~~~pL~~~~nv 273 (315)
T 3pp8_A 251 AMLDVFSQEPLPQESPLWRHPRV 273 (315)
T ss_dssp EEESCCSSSSCCTTCGGGGCTTE
T ss_pred EEcCCCCCCCCCCCChhhcCCCE
Confidence 99999999999999999999996
No 27
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=100.00 E-value=7.3e-42 Score=318.80 Aligned_cols=236 Identities=25% Similarity=0.376 Sum_probs=191.3
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHc-cCCcEEEeCCCCCCCHHHHhhcCCCceEEEe
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKL-KGCSALLCNPHQKVDKEALDESGENLKVIST 79 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l-~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~ 79 (294)
|+||+|++.+. .. .+..++.+++.+++..++. .+.+++.+.+ .++|+++++...++++++|+.+ |+||+|++
T Consensus 19 ~~kp~i~~l~~-~~-~~~~~~~l~~~~~~~~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Lk~I~~ 91 (347)
T 1mx3_A 19 SHMPLVALLDG-RD-CTVEMPILKDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVR 91 (347)
T ss_dssp --CCEEEESSC-SC-CTTTHHHHTTTCEEEECCC----SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEE
T ss_pred CCCCEEEEEcC-Cc-chhhHHHhhccceEEecCC----CCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhC-CCCCEEEE
Confidence 46899999874 22 2345888888888887753 4566777665 7888888776778999999986 77888888
Q ss_pred ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259 80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 159 (294)
Q Consensus 80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~ 159 (294)
.++|+|+||+++++++||.|+|+ |++++.+
T Consensus 92 ~~~G~d~id~~~~~~~gI~V~n~--------------------------------------------------~~~~~~~ 121 (347)
T 1mx3_A 92 IGSGFDNIDIKSAGDLGIAVCNV--------------------------------------------------PAASVEE 121 (347)
T ss_dssp SSSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CSTTHHH
T ss_pred cccccCcccHHHHHhCCceEEEC--------------------------------------------------CCCCHHH
Confidence 87777777777777666666665 8889999
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccc---ccccccCcCCCEEEEEcc------------c-----------
Q psy5259 160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQT---VISDIIGLNGSTVGIVGT------------E----------- 213 (294)
Q Consensus 160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~---~~g~~~~l~gktvgIiG~------------~----------- 213 (294)
||||+++++|++.|++..+.+.+++|.|....... ..| ..+++|+|+||||+ .
T Consensus 122 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~-~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~ 200 (347)
T 1mx3_A 122 TADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY 200 (347)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTT-CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccC-ccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCC
Confidence 99999999999999999999999999995321100 111 16899999999999 1
Q ss_pred --------CCCcc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceE
Q psy5259 214 --------LGAQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 214 --------~~~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~g 271 (294)
.+++. .++++++++||+|++|+|++++|+++|+++.| ||+++|+++|.++|++|+|+|
T Consensus 201 ~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~g 280 (347)
T 1mx3_A 201 LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRG 280 (347)
T ss_dssp SCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEE
T ss_pred cchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcE
Confidence 12233 37999999999999999999999999998877 999999999999999999999
Q ss_pred EEeeCCCCCCCC-CCCCCcCCCCC
Q psy5259 272 AGLDVMIPEPMP-ADHPLVQLDNC 294 (294)
Q Consensus 272 a~LDV~~~EP~~-~~~~l~~~~nv 294 (294)
|+||||+.||++ .++||+.+|||
T Consensus 281 A~lDV~~~EP~~~~~~~L~~~~nv 304 (347)
T 1mx3_A 281 AALDVHESEPFSFSQGPLKDAPNL 304 (347)
T ss_dssp EEESCCSSSSCCTTSSTTTTCSSE
T ss_pred EEEeecccCCCCCCCchHHhCCCE
Confidence 999999999987 47899999996
No 28
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=100.00 E-value=5.7e-42 Score=320.05 Aligned_cols=237 Identities=24% Similarity=0.386 Sum_probs=194.8
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHcc-----CCcEEEeC------CCCCCCHHHHhh
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLK-----GCSALLCN------PHQKVDKEALDE 69 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~-----~~d~~~~~------~~~~~~~~~l~~ 69 (294)
|+|||||++++.++..+..++.|++.++++.++. .+.+++++.++ ++|+++++ ...++++++|+.
T Consensus 1 m~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 76 (348)
T 2w2k_A 1 MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPANL----TTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISH 76 (348)
T ss_dssp -CCCEEEECSSCCSSCHHHHHHHHHHSEEEECCC----CCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTT
T ss_pred CCCcEEEEECCccccChHHHHHHHhcceEEecCC----CCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHh
Confidence 7889999998425433567888888888877643 57899999988 89998864 245899999998
Q ss_pred cCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEE
Q psy5259 70 SGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRV 149 (294)
Q Consensus 70 ~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v 149 (294)
++++||+|++.++|+|+||++.++++||.|+|+
T Consensus 77 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~----------------------------------------------- 109 (348)
T 2w2k_A 77 LPSSLKVFAAAGAGFDWLDLDALNERGVAFANS----------------------------------------------- 109 (348)
T ss_dssp SCTTCCEEEESSSCCTTBCHHHHHHTTCEEECC-----------------------------------------------
T ss_pred cccCceEEEECCccccccCHHHHHhCCcEEEEC-----------------------------------------------
Confidence 744688888888888887777777666666666
Q ss_pred EeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCC---CCcccc-ccccccccCcCCCEEEEEcc-----------c-
Q psy5259 150 GTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGE---WALKQT-QTVISDIIGLNGSTVGIVGT-----------E- 213 (294)
Q Consensus 150 ~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~---w~~~~~-~~~~g~~~~l~gktvgIiG~-----------~- 213 (294)
|++++.+||||+++++|++.|++..+++.+++|. |..... ....| .+++|+|+||||+ .
T Consensus 110 ---p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~--~~l~g~~vgIIG~G~IG~~vA~~l~~ 184 (348)
T 2w2k_A 110 ---RGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA--HNPRGHVLGAVGLGAIQKEIARKAVH 184 (348)
T ss_dssp ---TTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC--CCSTTCEEEEECCSHHHHHHHHHHHH
T ss_pred ---CCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC--cCCCCCEEEEEEECHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999 942110 11245 8999999999999 1
Q ss_pred ---------------------CCCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHH
Q psy5259 214 ---------------------LGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258 (294)
Q Consensus 214 ---------------------~~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~ 258 (294)
.+..+. ++++++++||+|++|+|++++|+++|+++.| ||+++|++
T Consensus 185 ~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~ 264 (348)
T 2w2k_A 185 GLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264 (348)
T ss_dssp TTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred hcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHH
Confidence 123334 7999999999999999999999999998766 99999999
Q ss_pred HHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 259 aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv 294 (294)
+|.++|++|+|+||++|||++|| +.++||+++|||
T Consensus 265 aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nv 299 (348)
T 2w2k_A 265 ALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHV 299 (348)
T ss_dssp HHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSE
T ss_pred HHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCE
Confidence 99999999999999999999999 667899999996
No 29
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=100.00 E-value=1.2e-41 Score=316.26 Aligned_cols=234 Identities=34% Similarity=0.632 Sum_probs=196.5
Q ss_pred CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
|+||+++.+ ++ +..++.|++.+++..+.... ..+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++
T Consensus 2 ~~~il~~~~-~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~ 76 (334)
T 2dbq_A 2 KPKVFITRE-IP--EVGIKMLEDEFEVEVWGDEK-EIPREILLKKVKEVDALVTMLSERIDKEVFENA-PKLRIVANYAV 76 (334)
T ss_dssp CCEEEESSC-CC--HHHHHHHHTTSEEEECCCSS-CCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTC-TTCCEEEESSS
T ss_pred CcEEEEecC-CC--HHHHHHHHhcCCEEEecCCC-CCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhC-CCceEEEECCc
Confidence 579999874 77 78888898888887655421 357889999999999999887678999999986 77877777777
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE 162 (294)
|+|+||++.++++||.|+|+ |++++.+|||
T Consensus 77 G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~~~~vAE 106 (334)
T 2dbq_A 77 GYDNIDIEEATKRGIYVTNT--------------------------------------------------PDVLTDATAD 106 (334)
T ss_dssp CCTTBCHHHHHHTTCEEECC--------------------------------------------------CSTTHHHHHH
T ss_pred ccccccHHHHHhCCCEEEeC--------------------------------------------------CCcCHHHHHH
Confidence 77777777766666666555 8899999999
Q ss_pred HHHHHHHHHhcCchhhhhhHhcCCCC----ccccccccccccCcCCCEEEEEcc--------------------------
Q psy5259 163 FNIGLAIAVSRRFQQGHNCIASGEWA----LKQTQTVISDIIGLNGSTVGIVGT-------------------------- 212 (294)
Q Consensus 163 ~al~l~l~~~r~~~~~~~~~~~~~w~----~~~~~~~~g~~~~l~gktvgIiG~-------------------------- 212 (294)
|+++++|++.|++..+.+.+++|.|. .+......| .++.|+++||||+
T Consensus 107 ~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~ 184 (334)
T 2dbq_A 107 LAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLG--YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK 184 (334)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCC--CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccc--cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence 99999999999999999999999995 222222235 7999999999999
Q ss_pred -----cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259 213 -----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGL 274 (294)
Q Consensus 213 -----~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~L 274 (294)
..+....++++++++||+|++|+|.+++|+++++++.| ||.++|+++|.++|++|+|+||++
T Consensus 185 ~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~l 264 (334)
T 2dbq_A 185 EEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGL 264 (334)
T ss_dssp HHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEE
T ss_pred hhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEe
Confidence 11234458999999999999999999999999997655 999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCcCCCCC
Q psy5259 275 DVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 275 DV~~~EP~~~~~~l~~~~nv 294 (294)
|||++|| ++++||+++|||
T Consensus 265 Dv~~~EP-~~~~~L~~~~~v 283 (334)
T 2dbq_A 265 DVFEEEP-YYNEELFKLDNV 283 (334)
T ss_dssp SCCSSSS-CCCHHHHHCTTE
T ss_pred cCCCCCC-CCCchhhcCCCE
Confidence 9999999 778999999996
No 30
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=100.00 E-value=1.1e-40 Score=327.08 Aligned_cols=230 Identities=30% Similarity=0.484 Sum_probs=196.4
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
|+|||||++++ ++ +...+.|++.+++..++. .+.+++.+.++++|++++++.+++++++|+.+ |+||+|++.
T Consensus 2 m~~~~vl~~~~-~~--~~~~~~l~~~~~v~~~~~----~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~i~~~ 73 (529)
T 1ygy_A 2 VSLPVVLIADK-LA--PSTVAALGDQVEVRWVDG----PDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARA 73 (529)
T ss_dssp -CCCEEEECSS-CC--GGGGTTSCSSSEEEECCT----TSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEES
T ss_pred CCCcEEEEeCC-CC--HHHHHHHhcCceEEEcCC----CCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCcEEEEC
Confidence 56899999984 77 777888887788876543 57889999999999999987789999999986 777777777
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
++|+|++|+++++++||.|+|+ |++++.+|
T Consensus 74 ~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------p~~~~~~v 103 (529)
T 1ygy_A 74 GVGLDNVDVDAATARGVLVVNA--------------------------------------------------PTSNIHSA 103 (529)
T ss_dssp SSCCTTBCHHHHHHTTCEEECC--------------------------------------------------TTSSHHHH
T ss_pred CcCcCccCHhHHHhCCeEEEEC--------------------------------------------------CCcchHHH
Confidence 7777777777666666555555 88999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------------- 212 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------------- 212 (294)
|||+++++|++.|++.++++.+++|.|.+.. ..| .+++|+|+||||+
T Consensus 104 AE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~---~~~--~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~ 178 (529)
T 1ygy_A 104 AEHALALLLAASRQIPAADASLREHTWKRSS---FSG--TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA 178 (529)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG---CCB--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhCCCcccC---cCc--cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChh
Confidence 9999999999999999999999999997532 345 8999999999999
Q ss_pred ---cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259 213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV 276 (294)
Q Consensus 213 ---~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV 276 (294)
..++...++++++++||+|++|+|++++|+++|+++.| ||.++|+++|.++|++|+|+||++||
T Consensus 179 ~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv 258 (529)
T 1ygy_A 179 RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV 258 (529)
T ss_dssp HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESS
T ss_pred HHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEee
Confidence 12334458999999999999999999999999998665 99999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCCC
Q psy5259 277 MIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 277 ~~~EP~~~~~~l~~~~nv 294 (294)
|+.||+ +++|||++|||
T Consensus 259 ~~~eP~-~~~~L~~~~~v 275 (529)
T 1ygy_A 259 FATEPC-TDSPLFELAQV 275 (529)
T ss_dssp CSSSSC-SCCGGGGCTTE
T ss_pred ccCCCC-CCchHHhCCCE
Confidence 999996 57999999985
No 31
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.9e-41 Score=310.60 Aligned_cols=232 Identities=31% Similarity=0.504 Sum_probs=193.9
Q ss_pred CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
|+||+++. .++ ++.++.|++.+++..++ . .+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++
T Consensus 2 ~~~il~~~-~~~--~~~~~~l~~~~~~~~~~-~---~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~ 73 (333)
T 2d0i_A 2 RPKVGVLL-KMK--REALEELKKYADVEIIL-Y---PSGEELKGVIGRFDGIIVSPTTKITREVLENA-ERLKVISCHSA 73 (333)
T ss_dssp CSEEEECS-CCC--HHHHHHHHTTSEEEECC-S---CCHHHHHHHGGGCSEEEECTTSCBCHHHHTTC-TTCCEEEESSS
T ss_pred CcEEEEEC-CCC--HHHHHHHHhcCCEEEeC-C---CCHHHHHHHhcCCEEEEECCCCCCCHHHHhhC-CCceEEEECCc
Confidence 68999998 477 88889998878877654 1 57889999999999999776678999999986 77888887777
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE 162 (294)
|+|++|+++++++||.|+|+ |++++.+|||
T Consensus 74 G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~~~~vAE 103 (333)
T 2d0i_A 74 GYDNIDLEEATKRGIYVTKV--------------------------------------------------SGLLSEAVAE 103 (333)
T ss_dssp CCTTBCHHHHHHTTCEEECC--------------------------------------------------CHHHHHHHHH
T ss_pred ccccccHHHHHhCCcEEEeC--------------------------------------------------CCcChHHHHH
Confidence 77777777776666666555 8899999999
Q ss_pred HHHHHHHHHhcCchhhhhhHhcCCCCccccccccc--cccCcCCCEEEEEcc----------------------------
Q psy5259 163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVIS--DIIGLNGSTVGIVGT---------------------------- 212 (294)
Q Consensus 163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g--~~~~l~gktvgIiG~---------------------------- 212 (294)
|+++++|++.|++..+++.+++|.|..+... ..| ..++++|+++||||+
T Consensus 104 ~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~ 182 (333)
T 2d0i_A 104 FTVGLIINLMRKIHYADKFIRRGEWESHAKI-WTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVN 182 (333)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTCCCCHHHH-HTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHcCCCCcCccc-ccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh
Confidence 9999999999999999999999999642110 111 015899999999999
Q ss_pred ---cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 213 ---~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~------------RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
..+....++++++++||+|++|+|.+++|+++|+++.| ||.++|+++|.++|++|+|+||++|||
T Consensus 183 ~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~gilin~srg~~vd~~aL~~aL~~~~i~gaglDv~ 262 (333)
T 2d0i_A 183 VEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVF 262 (333)
T ss_dssp HHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTCEEEECSCGGGBCHHHHHHHHHTTCBCEEEESCC
T ss_pred hhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEecCC
Confidence 11233458999999999999999999999999986433 999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCC-CC
Q psy5259 278 IPEPMPADHPLVQLD-NC 294 (294)
Q Consensus 278 ~~EP~~~~~~l~~~~-nv 294 (294)
++||++ ++||+++| ||
T Consensus 263 ~~EP~~-~~~L~~~~~nv 279 (333)
T 2d0i_A 263 EKEPVR-EHELFKYEWET 279 (333)
T ss_dssp SSSSCS-CCGGGGCTTTE
T ss_pred CCCCCC-CchHHcCCCCE
Confidence 999988 89999999 86
No 32
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=100.00 E-value=2.5e-39 Score=303.60 Aligned_cols=204 Identities=25% Similarity=0.354 Sum_probs=168.0
Q ss_pred CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
||||++++ ++| ...+.|++..+++.++.. ..+.+ .++++|++++++..++++++|+ .++||+|++.++
T Consensus 3 mmkIl~~~-~~p---~~~~~~~~~~~v~~~~~~--~~~~~----~l~~ad~li~~~~~~v~~~ll~--~~~Lk~I~~~~~ 70 (381)
T 3oet_A 3 AMKILVDE-NMP---YARELFSRLGEVKAVPGR--PIPVE----ELNHADALMVRSVTKVNESLLS--GTPINFVGTATA 70 (381)
T ss_dssp CCEEEEET-TST---THHHHHTTSSEEEEECC-----CHH----HHTTCSEEEECTTSCBSHHHHT--TSCCCEEEESSS
T ss_pred ceEEEECC-CCc---HHHHHHhhCCcEEEeCCC--CCCHH----HHCCCEEEEECCCCCCCHHHHc--CCCCEEEEEccc
Confidence 68999998 476 356777777788876543 24444 5789999999877899999998 366988888888
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE 162 (294)
|+|+||++.++++||.|+|+ ||+++.+|||
T Consensus 71 G~D~iD~~~~~~~gI~v~n~--------------------------------------------------pg~~~~~VAE 100 (381)
T 3oet_A 71 GTDHVDEAWLKQAGIGFSAA--------------------------------------------------PGCNAIAVVE 100 (381)
T ss_dssp CCTTBCHHHHHHTTCEEECC--------------------------------------------------TTTTHHHHHH
T ss_pred cccccCHHHHHhCCEEEEEC--------------------------------------------------CCcCcchhHH
Confidence 88888888888777777666 7778888888
Q ss_pred HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------cC
Q psy5259 163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------EL 214 (294)
Q Consensus 163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------~~ 214 (294)
|+++++|++.|+. | ++++|||+||||+ ..
T Consensus 101 ~~l~~lL~l~r~~---------------------g--~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~ 157 (381)
T 3oet_A 101 YVFSALLMLAERD---------------------G--FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGD 157 (381)
T ss_dssp HHHHHHHHHHHHT---------------------T--CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTC
T ss_pred HHHHHHHHHHHhc---------------------C--CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhcc
Confidence 8888888887641 3 6788899999998 12
Q ss_pred CCcccCHHHHhccCCEEEEecCCCcc----cccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 215 GAQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 215 ~~~~~~l~ell~~sDvV~l~~p~t~~----T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
+..+.++++++++||+|++|+|+|++ |+|+||++.| ||++||++||++||++|++.||+||||
T Consensus 158 ~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~ 237 (381)
T 3oet_A 158 EGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVW 237 (381)
T ss_dssp CSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCC
T ss_pred CcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeecc
Confidence 34567899999999999999999999 9999999988 999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCC
Q psy5259 278 IPEPMPADHPLVQLD 292 (294)
Q Consensus 278 ~~EP~~~~~~l~~~~ 292 (294)
++||++. ++||.++
T Consensus 238 e~EP~~~-~~L~~~~ 251 (381)
T 3oet_A 238 EGEPDLN-VALLEAV 251 (381)
T ss_dssp TTTTSCC-HHHHHHS
T ss_pred ccCCCCc-chhhhCC
Confidence 9999875 5677654
No 33
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=100.00 E-value=7.2e-39 Score=293.69 Aligned_cols=213 Identities=23% Similarity=0.293 Sum_probs=173.3
Q ss_pred CeEEEecCCCCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
||||++.+ ++ ++..+.|++. +++. . +.++++|+++++. .+.++|+++ |+||+|++.++
T Consensus 1 m~il~~~~-~~--~~~~~~l~~~~~~v~---~-----------~~~~~~d~~i~~~---~~~~~l~~~-~~Lk~I~~~~~ 59 (303)
T 1qp8_A 1 MELYVNFE-LP--PEAEEELRKYFKIVR---G-----------GDLGNVEAALVSR---ITAEELAKM-PRLKFIQVVTA 59 (303)
T ss_dssp CEEECCSC-CC--HHHHHHHHTTCEEEC---S-----------SCCTTBCCCCBSC---CCHHHHHHC-TTCCCEEBSSS
T ss_pred CEEEEccC-CC--HHHHHHHHhcCCccc---h-----------hhhCCCEEEEECC---CCHHHHhhC-CCCcEEEECCc
Confidence 47899874 77 7888888774 4442 1 2578999988763 456888875 66666666666
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE 162 (294)
|+|+||++.+ ++||.|+|+++.++.+|||
T Consensus 60 G~d~id~~~~---------------------------------------------------~~gi~v~~~~~~~~~~vAE 88 (303)
T 1qp8_A 60 GLDHLPWESI---------------------------------------------------PPHVTVAGNAGSNADAVAE 88 (303)
T ss_dssp CCTTSCCTTS---------------------------------------------------CTTSCEECCCSSSHHHHHH
T ss_pred CcccccHHHH---------------------------------------------------hcCCEEEECCCCCchHHHH
Confidence 6666655542 3555666669999999999
Q ss_pred HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC---------------
Q psy5259 163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG--------------- 215 (294)
Q Consensus 163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~--------------- 215 (294)
|+++++|++.|++..+++.+++|.|... ..+ ++++|+|+||||+ .++
T Consensus 89 ~~~~~~L~~~R~~~~~~~~~~~g~w~~~----~~~--~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~~~~~ 162 (303)
T 1qp8_A 89 FALALLLAPYKRIIQYGEKMKRGDYGRD----VEI--PLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPW 162 (303)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTTCCCCC----SCC--CCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred HHHHHHHHHHhCHHHHHHHHHcCCCCCC----CCC--CCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCccccCc
Confidence 9999999999999999999999999642 122 6899999999999 111
Q ss_pred CcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC-CCCC
Q psy5259 216 AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM-IPEP 281 (294)
Q Consensus 216 ~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~-~~EP 281 (294)
....++++++++||+|++|+|++++|+++|+++.| ||.++|+++|.++|++|+|+||+|||| ++||
T Consensus 163 ~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep 242 (303)
T 1qp8_A 163 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRND 242 (303)
T ss_dssp CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTC
T ss_pred ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCC
Confidence 12357999999999999999999999999998777 999999999999999999999999999 8899
Q ss_pred CCCCCCCcCCCCC
Q psy5259 282 MPADHPLVQLDNC 294 (294)
Q Consensus 282 ~~~~~~l~~~~nv 294 (294)
+++++|||++|||
T Consensus 243 ~~~~~~L~~~~nv 255 (303)
T 1qp8_A 243 FAKDAEFFSLPNV 255 (303)
T ss_dssp CGGGHHHHTSTTE
T ss_pred CCCCChhhcCCCE
Confidence 9989999999996
No 34
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=100.00 E-value=5.5e-37 Score=279.16 Aligned_cols=180 Identities=22% Similarity=0.306 Sum_probs=147.8
Q ss_pred HHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcc
Q psy5259 46 EKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLK 125 (294)
Q Consensus 46 ~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk 125 (294)
+.++++|+++++. .++ . .|+||+|++.++|+|+||++.+++
T Consensus 30 ~~~~~ad~li~~~-~~~------~-~~~Lk~I~~~~~G~d~id~~~~~~------------------------------- 70 (290)
T 3gvx_A 30 PDYYDAEAQVIKD-RYV------L-GKRTKMIQAISAGVDHIDVNGIPE------------------------------- 70 (290)
T ss_dssp TSCCCCSEEEESS-CCC------C-CSSCCEEEECSSCCTTSCGGGSCT-------------------------------
T ss_pred cchhhhhhhhhhh-hhh------h-hhhhHHHHHHhcCCceeecCCCcc-------------------------------
Confidence 3678899998842 232 2 466777766666666666665554
Q ss_pred eEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCC
Q psy5259 126 VISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGS 205 (294)
Q Consensus 126 ~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gk 205 (294)
+|+.++| ++.++.+||||+++++|++.|++..+.+.+++|.|.+. .. ++++||
T Consensus 71 -------------------~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~-----~~--~~l~g~ 123 (290)
T 3gvx_A 71 -------------------NVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQS-----PT--TLLYGK 123 (290)
T ss_dssp -------------------TSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CC--CCCTTC
T ss_pred -------------------ceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccC-----Cc--eeeecc
Confidence 3333333 46788999999999999999999999999999999752 12 789999
Q ss_pred EEEEEcc---------------------cC------CCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------
Q psy5259 206 TVGIVGT---------------------EL------GAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------- 250 (294)
Q Consensus 206 tvgIiG~---------------------~~------~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~------- 250 (294)
|+||||+ +. ..+.. ++++++++||+|++|+|+|++|+++|+++.|
T Consensus 124 tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga 203 (290)
T 3gvx_A 124 ALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNL 203 (290)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTC
T ss_pred hheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCc
Confidence 9999999 10 12233 8999999999999999999999999999888
Q ss_pred ------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259 251 ------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 251 ------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv 294 (294)
||+++|++||+++|++|+|.||+||||++||+ +|||++|||
T Consensus 204 ilIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nv 250 (290)
T 3gvx_A 204 TIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNA 250 (290)
T ss_dssp EEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSE
T ss_pred eEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc---cchhhhhhh
Confidence 99999999999999999999999999999997 899999996
No 35
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.4e-36 Score=285.45 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=163.6
Q ss_pred CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG 83 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G 83 (294)
|||++++ ++| . ..+.+++..++..++.. ..+.+ .++++|++++++..++++++|+ . |+||+|++.++|
T Consensus 1 mkil~~~-~~~--~-~~~~~~~~~~v~~~~~~--~~~~~----~l~~ad~li~~~~~~~~~~~l~-~-~~Lk~I~~~~~G 68 (380)
T 2o4c_A 1 MRILADE-NIP--V-VDAFFADQGSIRRLPGR--AIDRA----ALAEVDVLLVRSVTEVSRAALA-G-SPVRFVGTCTIG 68 (380)
T ss_dssp CEEEEET-TCT--T-HHHHHGGGSEEEEECGG--GCSTT----TTTTCSEEEECTTSCBCHHHHT-T-SCCCEEEECSSC
T ss_pred CEEEEec-Cch--H-HHHHHHhCCcEEEecCC--cCChH----HHCCcEEEEEcCCCCCCHHHhc-C-CCceEEEEcCcc
Confidence 4799987 466 3 45667766677665432 12333 4689999999877899999998 4 889999998888
Q ss_pred CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259 84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF 163 (294)
Q Consensus 84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~ 163 (294)
+|+||++.++++||.|+|+ ||+++.+||||
T Consensus 69 ~D~iD~~~~~~~gI~v~n~--------------------------------------------------pg~~~~~vAE~ 98 (380)
T 2o4c_A 69 TDHLDLDYFAEAGIAWSSA--------------------------------------------------PGCNARGVVDY 98 (380)
T ss_dssp STTBCHHHHHHHTCEEECC--------------------------------------------------TTTTHHHHHHH
T ss_pred cchhhHHHHHhCCCEEEeC--------------------------------------------------CCcChHHHHHH
Confidence 8888888877777766666 77777778888
Q ss_pred HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------cCC
Q psy5259 164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------ELG 215 (294)
Q Consensus 164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------~~~ 215 (294)
+++++|++.|+ | | .+++|+|+||||+ ..+
T Consensus 99 ~l~~lL~l~r~------------~---------~--~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g 155 (380)
T 2o4c_A 99 VLGCLLAMAEV------------R---------G--ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPD 155 (380)
T ss_dssp HHHHHHHHHHH------------H---------T--CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTT
T ss_pred HHHHHHHHHhh------------h---------h--cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccC
Confidence 88888887765 1 2 5677888888888 123
Q ss_pred CcccCHHHHhccCCEEEEecCCCcc----cccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259 216 AQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI 278 (294)
Q Consensus 216 ~~~~~l~ell~~sDvV~l~~p~t~~----T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~ 278 (294)
..+.++++++++||+|++|+|++++ |+|+||++.| ||++||++||+++|++|+|.+|+||||+
T Consensus 156 ~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~ 235 (380)
T 2o4c_A 156 GEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWE 235 (380)
T ss_dssp SCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred cccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeec
Confidence 4567899999999999999999999 9999998887 9999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCCCC
Q psy5259 279 PEPMPADHPLVQLDNC 294 (294)
Q Consensus 279 ~EP~~~~~~l~~~~nv 294 (294)
+||++ +++|+.+ ||
T Consensus 236 ~EP~~-~~~l~~~-nv 249 (380)
T 2o4c_A 236 GEPQA-DPELAAR-CL 249 (380)
T ss_dssp TTTSC-CHHHHTT-CS
T ss_pred cCCCC-chhhccC-CE
Confidence 99965 4677763 64
No 36
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=99.76 E-value=1.3e-19 Score=174.42 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=126.8
Q ss_pred cCcceEE-EeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccccc
Q psy5259 122 KNLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDII 200 (294)
Q Consensus 122 ~~Lk~i~-~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~ 200 (294)
++++.|. ..++|+|++ +++.++||.++|+++.++ +||| ++.|++....+.++.| |.+ ..+ .
T Consensus 192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r-----~~~--~ 253 (479)
T 1v8b_A 192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR-----ATD--F 253 (479)
T ss_dssp TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH-----HHC--C
T ss_pred cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh-----ccc--c
Confidence 7888888 779999988 889999999999999999 9999 3467887777777777 854 234 7
Q ss_pred CcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259 201 GLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 201 ~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
++.||++||+|+ ..+++..++++++++||+|++|+ +|+++|+++
T Consensus 254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI~~~ 329 (479)
T 1v8b_A 254 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVIKLE 329 (479)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSBCHH
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----ChhhhcCHH
Confidence 899999999999 23455678999999999999994 899999998
Q ss_pred cc-------------cCcC-CCHHHHHH--HHHcCCceEEEeeCCCCCCCCCCCCCcCC--CCC
Q psy5259 249 QF-------------RGGL-LDQEALVE--FLRDKKIGGAGLDVMIPEPMPADHPLVQL--DNC 294 (294)
Q Consensus 249 ~~-------------RG~l-vde~aL~~--aL~~g~i~ga~LDV~~~EP~~~~~~l~~~--~nv 294 (294)
.| ||.+ ||+++|.+ ||++|+|+ +++||| |+|+++|||.+ |||
T Consensus 330 ~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nv 389 (479)
T 1v8b_A 330 HLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRL 389 (479)
T ss_dssp HHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSB
T ss_pred HHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCE
Confidence 87 9999 99999999 99999998 899998 45568999988 885
No 37
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=99.72 E-value=7.8e-20 Score=176.48 Aligned_cols=146 Identities=13% Similarity=0.169 Sum_probs=121.4
Q ss_pred cCcceEE-EeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccccc
Q psy5259 122 KNLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDII 200 (294)
Q Consensus 122 ~~Lk~i~-~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~ 200 (294)
++++.+. ..++|+|++ +++.++||.++|+++.++ +|||+. .|++......+..| |.+ ..| .
T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~-----~~g--~ 273 (494)
T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR-----ATD--V 273 (494)
T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH-----HHC--C
T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh-----ccc--c
Confidence 7888888 779999988 789999999999999999 999943 36665555555566 743 345 7
Q ss_pred CcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259 201 GLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 201 ~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
++.|||+||+|+ ..+.+..++++++++||+|++|+ +|+++|+++
T Consensus 274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI~~~ 349 (494)
T 3d64_A 274 MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVINHD 349 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSBCHH
T ss_pred ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----CcccccCHH
Confidence 899999999999 22455678999999999999997 799999998
Q ss_pred cc-------------cCcC-CCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCC--CCC
Q psy5259 249 QF-------------RGGL-LDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL--DNC 294 (294)
Q Consensus 249 ~~-------------RG~l-vde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~--~nv 294 (294)
.| ||.+ ||+++| +||++|+|+ +++| .||+|.++|||.+ |||
T Consensus 350 ~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~D---v~plp~~~pL~~l~~~nv 406 (494)
T 3d64_A 350 HMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVD---HIIFPDGKRVILLAEGRL 406 (494)
T ss_dssp HHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEE---EEECTTSCEEEEEGGGSB
T ss_pred HHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEE---EEECCCCCchhhcCCCCE
Confidence 88 9999 699999 999999997 4555 5587888999998 886
No 38
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=99.69 E-value=2.9e-17 Score=149.32 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=115.0
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC------CCHHHHHHHccCCcEEEeC----------------
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR------MPRDIFIEKLKGCSALLCN---------------- 57 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~------~~~e~~~~~l~~~d~~~~~---------------- 57 (294)
|++|||++.+. -.......+.|.+ ++++......... ...+++.+.++++|+++++
T Consensus 3 ~~~m~i~v~~~-~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~ 81 (293)
T 3d4o_A 3 LTGKHVVIIGG-DARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSN 81 (293)
T ss_dssp CTTCEEEEECB-CHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCS
T ss_pred ccCcEEEEECC-CHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeeccccc
Confidence 67899999874 2211345567766 6888765432100 1235566678899999985
Q ss_pred CCCCCCHHHHhhcCCCceEEEeccccCcccCh-hhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccc
Q psy5259 58 PHQKVDKEALDESGENLKVISTFSVGHDHLHL-DQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDH 136 (294)
Q Consensus 58 ~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~-~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~ 136 (294)
...++++++|+.+ |++|+|+ +|+|++|+ +.++++||.|+|++.. +
T Consensus 82 ~~~~~~~~~l~~~-~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~--~---------------------------- 127 (293)
T 3d4o_A 82 ESIVLTEEMIEKT-PNHCVVY---SGISNTYLNQCMKKTNRTLVKLMER--D---------------------------- 127 (293)
T ss_dssp CCCBCCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGC--H----------------------------
T ss_pred CCccchHHHHHhC-CCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCC--c----------------------------
Confidence 2346889999876 6777765 56666665 5666666655555110 0
Q ss_pred cccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----
Q psy5259 137 LHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---- 212 (294)
Q Consensus 137 id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---- 212 (294)
.++++++.+|||+++++++.. .| .++.|+++||+|+
T Consensus 128 --------------~~~~~~~~svae~a~~~~l~~------------------------~~--~~l~g~~v~IiG~G~iG 167 (293)
T 3d4o_A 128 --------------DIAIYNSIPTAEGTIMMAIQH------------------------TD--FTIHGANVAVLGLGRVG 167 (293)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHH------------------------CS--SCSTTCEEEEECCSHHH
T ss_pred --------------eeeeeccHhHHHHHHHHHHHh------------------------cC--CCCCCCEEEEEeeCHHH
Confidence 012678999999999998853 13 6889999999999
Q ss_pred ----------------------------cCCCcc---cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 213 ----------------------------ELGAQL---VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 213 ----------------------------~~~~~~---~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
+++.+. .++++++++||+|++|+|+ ++++++.|
T Consensus 168 ~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l 231 (293)
T 3d4o_A 168 MSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVVTANVL 231 (293)
T ss_dssp HHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHhCHHHH
Confidence 123332 3688999999999999996 67776655
No 39
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=99.44 E-value=3.2e-14 Score=129.50 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=53.3
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCC------CHHHHHHHccCCcEEEeCC--------------C
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRM------PRDIFIEKLKGCSALLCNP--------------H 59 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~------~~e~~~~~l~~~d~~~~~~--------------~ 59 (294)
|+.|||++.+. -+......+.|.+ ++++.......... ..+++.+.++++|+++.+. .
T Consensus 5 ~~~mki~v~~~-~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~ 83 (300)
T 2rir_A 5 LTGLKIAVIGG-DARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN 83 (300)
T ss_dssp CCSCEEEEESB-CHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence 56789999874 2211345566766 67887653221010 1223456678999999731 1
Q ss_pred CC--CCHHHHhhcCCCceEEEeccccCcccC-hhhHhhCCcEEeec
Q psy5259 60 QK--VDKEALDESGENLKVISTFSVGHDHLH-LDQIKSRGIRVGTV 102 (294)
Q Consensus 60 ~~--~~~~~l~~~~~~lk~i~~~~~G~d~id-~~~~~~~gI~v~~~ 102 (294)
.+ +++++++.+ |++|+|. +|+|++| ++.+.++||.|+|+
T Consensus 84 ~~~~~~~~~l~~~-~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~ 125 (300)
T 2rir_A 84 EEVVLKQDHLDRT-PAHCVIF---SGISNAYLENIAAQAKRKLVKL 125 (300)
T ss_dssp SCEECCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHTTCCEEEG
T ss_pred CCccchHHHHhhc-CCCCEEE---EecCCHHHHHHHHHCCCEEEee
Confidence 23 566666654 5555554 4555555 45455444444444
No 40
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=99.01 E-value=1.4e-09 Score=102.11 Aligned_cols=214 Identities=13% Similarity=0.173 Sum_probs=130.2
Q ss_pred CCCchhHHHhhc-cceEEEcCCCC--CCCCHHHHH-----------HHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEe
Q psy5259 14 PRVSPAYDILED-MFDIITYPISE--GRMPRDIFI-----------EKLKGCSALLCNPHQKVDKEALDESGENLKVIST 79 (294)
Q Consensus 14 ~~~~~~~~~l~~-~~~v~~~~~~~--~~~~~e~~~-----------~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~ 79 (294)
+..|+..++|.+ +++|..-...+ ...+.+++. +.++++|+++.. ..+.++|+... .++..++..
T Consensus 17 ~ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~v-k~p~~~e~~~l-~~~~~l~~~ 94 (377)
T 2vhw_A 17 AITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKV-KEPIAAEYGRL-RHGQILFTF 94 (377)
T ss_dssp SCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEECS-SCCCGGGGGGC-CTTCEEEEC
T ss_pred CcCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEEe-CCCChHHHhhc-CCCCEEEEE
Confidence 344777788866 78886632210 135666666 234568877543 44565565544 366666666
Q ss_pred ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259 80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 159 (294)
Q Consensus 80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~ 159 (294)
...++|...++.+.++||.+-.. +.++.+. .+.|.. .+
T Consensus 95 ~~~~~~~~~l~~l~~~gi~~ia~--------------------------------e~v~~~~--------~~~p~~--s~ 132 (377)
T 2vhw_A 95 LHLAASRACTDALLDSGTTSIAY--------------------------------ETVQTAD--------GALPLL--AP 132 (377)
T ss_dssp CCGGGCHHHHHHHHHHTCEEEEG--------------------------------GGCCCTT--------SCCTTT--HH
T ss_pred ecccCCHHHHHHHHHcCCeEEEe--------------------------------eeccccC--------CCcccc--Cc
Confidence 56667777777777666644222 3333221 234444 46
Q ss_pred HHHHHHHHHHHHh-cCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------
Q psy5259 160 VAEFNIGLAIAVS-RRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------------------- 212 (294)
Q Consensus 160 VAE~al~l~l~~~-r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------------------- 212 (294)
+||++..+++.+. |++.. ...|+|..+. +..++.|++++|+|.
T Consensus 133 ~ae~ag~~a~~~a~r~l~~----~~~g~~~~~~------~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~ 202 (377)
T 2vhw_A 133 MSEVAGRLAAQVGAYHLMR----TQGGRGVLMG------GVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINID 202 (377)
T ss_dssp HHHHHHHHHHHHHHHHTSG----GGTSCCCCTT------CBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred hHHHHHHHHHHHHHHHHHH----hcCCCccccc------CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6699985544443 66633 2334442211 125789999999999
Q ss_pred ------c-CCCc-------ccCHHHHhccCCEEEEec--CCCcccccccccccc-----cCcCCCHHHHHHHHHcCCceE
Q psy5259 213 ------E-LGAQ-------LVPLDTLCAQSDFIFVTC--ALTKDTEQLIGRKQF-----RGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 213 ------~-~~~~-------~~~l~ell~~sDvV~l~~--p~t~~T~~li~~~~~-----RG~lvde~aL~~aL~~g~i~g 271 (294)
+ ++.. ..+++++++++|+|+.++ |.+ +|.++|+++.| .|.+||-. ...| |
T Consensus 203 ~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va-----~~~G---g 273 (377)
T 2vhw_A 203 KLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIA-----IDQG---G 273 (377)
T ss_dssp HHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGG-----GGTT---C
T ss_pred HHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEe-----cCCC---C
Confidence 1 2322 235778899999999955 666 88999988777 34455543 1223 1
Q ss_pred EEeeCCCC-CCCCCCCCCcCCCCC
Q psy5259 272 AGLDVMIP-EPMPADHPLVQLDNC 294 (294)
Q Consensus 272 a~LDV~~~-EP~~~~~~l~~~~nv 294 (294)
||+. ||.+.++|++.++||
T Consensus 274 ----v~e~~ep~~~~~~~~~~~~v 293 (377)
T 2vhw_A 274 ----CFEGSRPTTYDHPTFAVHDT 293 (377)
T ss_dssp ----SBTTCCCBCSSSCEEEETTE
T ss_pred ----ccccccCCCCCCCEEEECCE
Confidence 7887 998888899988875
No 41
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=98.95 E-value=3.1e-11 Score=116.76 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=99.4
Q ss_pred EEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCE
Q psy5259 127 ISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGST 206 (294)
Q Consensus 127 i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gkt 206 (294)
+...++|+|++ ..+.++|+.++++++.+. +|||+. .|++......+..+ |.+ ..+ ..+.|++
T Consensus 215 veetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r-----~~~--~~l~Gkt 276 (494)
T 3ce6_A 215 TEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INR-----GTD--ALIGGKK 276 (494)
T ss_dssp EECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHH-----HHC--CCCTTCE
T ss_pred EEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHh-----ccC--CCCCcCE
Confidence 34679999988 778899999999999988 999953 34443333333333 422 122 5789999
Q ss_pred EEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc----
Q psy5259 207 VGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF---- 250 (294)
Q Consensus 207 vgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~---- 250 (294)
|+|+|+ ..+++..+++++++++|+|+.|++ |.++|+++.|
T Consensus 277 V~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~mk 352 (494)
T 3ce6_A 277 VLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATG----NKDIIMLEHIKAMK 352 (494)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSS----SSCSBCHHHHHHSC
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCC----CHHHHHHHHHHhcC
Confidence 999999 245556689999999999999974 6678886665
Q ss_pred ---------cCcC-CCHHHHHH-HHHcCCceEEEeeCCCCCC
Q psy5259 251 ---------RGGL-LDQEALVE-FLRDKKIGGAGLDVMIPEP 281 (294)
Q Consensus 251 ---------RG~l-vde~aL~~-aL~~g~i~ga~LDV~~~EP 281 (294)
|+.. ||+++|+. +|++++|. +++|+|+.+|
T Consensus 353 ~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~ 393 (494)
T 3ce6_A 353 DHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGD 393 (494)
T ss_dssp TTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTT
T ss_pred CCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCC
Confidence 8888 99999999 89899998 6789987643
No 42
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=98.48 E-value=6.3e-07 Score=83.56 Aligned_cols=216 Identities=11% Similarity=0.197 Sum_probs=114.3
Q ss_pred CCCchhHHHhhc-cceEEEcCCCC--CCCCHHHHHH----------HccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259 14 PRVSPAYDILED-MFDIITYPISE--GRMPRDIFIE----------KLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80 (294)
Q Consensus 14 ~~~~~~~~~l~~-~~~v~~~~~~~--~~~~~e~~~~----------~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~ 80 (294)
+..|+..++|.+ +++|..-...+ ...+.+++.+ .+ ++|+++.. ..++ .+.++.+.|+.++++..
T Consensus 17 ~l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~v-k~p~-~~~~~~l~~~~~~~~~~ 93 (369)
T 2eez_A 17 ALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKV-KEPL-PEEYGFLREGLILFTYL 93 (369)
T ss_dssp SSCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECS-SCCC-GGGGGGCCTTCEEEECC
T ss_pred CcCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEE-CCCC-HHHHhhcCCCcEEEEEe
Confidence 344777888866 78886632211 1357777775 45 79998854 3455 44466666888899888
Q ss_pred cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259 81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV 160 (294)
Q Consensus 81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V 160 (294)
..+.|...++.+.++||.+.-. +.++.+ .| +.|-.+..+.
T Consensus 94 ~~~~~~~~~~~l~~~gi~~ia~--------------------------------e~~~~~----~~----~~~~l~~~s~ 133 (369)
T 2eez_A 94 HLAADRGLTEAMLRSGVTGIAY--------------------------------ETVQLP----DG----TLPLLVPMSE 133 (369)
T ss_dssp CGGGCHHHHHHHHHHTCEEEEG--------------------------------GGCCCT----TC----CCTTTHHHHH
T ss_pred cccCCHHHHHHHHHCCCeEEEe--------------------------------eccccc----cC----CeeecccchH
Confidence 8888888888888888866321 111111 01 1133444455
Q ss_pred HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259 161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------------- 212 (294)
Q Consensus 161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------------- 212 (294)
++...+.+++.. .+..... .++.| .++..++.+++++|+|.
T Consensus 134 ~ag~~av~~a~~-~l~~~~~--g~~~~--------~~~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~ 202 (369)
T 2eez_A 134 VAGRMAPQVGAQ-FLEKPKG--GRGVL--------LGGVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRL 202 (369)
T ss_dssp HHHHHHHHHHHH-HTSGGGT--SCCCC--------TTCBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHH-HHHHhcC--CCcee--------cCCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 454334443332 2222211 01122 11225789999999999
Q ss_pred ----c-CCCc-------ccCHHHHhccCCEEEEecCCCc-ccccccccccc-----cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259 213 ----E-LGAQ-------LVPLDTLCAQSDFIFVTCALTK-DTEQLIGRKQF-----RGGLLDQEALVEFLRDKKIGGAGL 274 (294)
Q Consensus 213 ----~-~~~~-------~~~l~ell~~sDvV~l~~p~t~-~T~~li~~~~~-----RG~lvde~aL~~aL~~g~i~ga~L 274 (294)
+ .+.. ..+++++++.+|+|+.+++... .+.++++++.+ .|.+||-.. ..| |+ +
T Consensus 203 ~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~-----~~g---g~-~ 273 (369)
T 2eez_A 203 QYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV-----DQG---GC-V 273 (369)
T ss_dssp HHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC----------------
T ss_pred HHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEec-----CCC---CC-C
Confidence 1 2221 2357788899999999999776 68888887777 455665541 222 44 8
Q ss_pred eCCCCCCCCCCCCCcCCCCC
Q psy5259 275 DVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 275 DV~~~EP~~~~~~l~~~~nv 294 (294)
|++ ||.+.++|++.++||
T Consensus 274 d~~--ep~~~~~~~~~~~~v 291 (369)
T 2eez_A 274 ETI--RPTTHAEPTYVVDGV 291 (369)
T ss_dssp --------------CEETTE
T ss_pred Ccc--cCCCCCCCEEEECCE
Confidence 988 676666788776653
No 43
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=98.45 E-value=1.9e-07 Score=88.24 Aligned_cols=91 Identities=10% Similarity=0.114 Sum_probs=62.8
Q ss_pred CCchhHHHhhc-cceEEEcCCCC--CCCCHHHHHHH---------ccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259 15 RVSPAYDILED-MFDIITYPISE--GRMPRDIFIEK---------LKGCSALLCNPHQKVDKEALDESGENLKVISTFSV 82 (294)
Q Consensus 15 ~~~~~~~~l~~-~~~v~~~~~~~--~~~~~e~~~~~---------l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~ 82 (294)
..++...+|.+ +++|......+ .-.+.+++.+. +-++|+++.. .. .+++.++.+.|++++|+....
T Consensus 25 ltP~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~adiil~v-k~-p~~~~i~~l~~~~~li~~~~~ 102 (401)
T 1x13_A 25 ATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKV-NA-PLDDEIALLNPGTTLVSFIWP 102 (401)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGSSSEEECS-SC-CCHHHHTTCCTTCEEEECCCG
T ss_pred CCHHHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhcCCeEEEe-CC-CCHHHHHHhcCCCcEEEEecC
Confidence 33677777765 78887642211 13566777643 3348988864 22 357778877789999999999
Q ss_pred cCcccChhhHhhCCcEEeecCCCChhhhhh
Q psy5259 83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 112 (294)
Q Consensus 83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae 112 (294)
|+|+.+++.+.++||.+. +.++|+|
T Consensus 103 ~~d~~~~~al~~~gI~v~-----~~e~v~~ 127 (401)
T 1x13_A 103 AQNPELMQKLAERNVTVM-----AMDSVPR 127 (401)
T ss_dssp GGCHHHHHHHHHTTCEEE-----EGGGCCC
T ss_pred CCCHHHHHHHHHCCCEEE-----Eeehhhh
Confidence 999999999999999884 3455554
No 44
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=98.45 E-value=2.3e-09 Score=101.72 Aligned_cols=86 Identities=14% Similarity=0.248 Sum_probs=70.0
Q ss_pred cC-cCCCEEEEEcc------------c-CCCcc---------------cCHHHHhccCCE-EEEecCCCccccccccccc
Q psy5259 200 IG-LNGSTVGIVGT------------E-LGAQL---------------VPLDTLCAQSDF-IFVTCALTKDTEQLIGRKQ 249 (294)
Q Consensus 200 ~~-l~gktvgIiG~------------~-~~~~~---------------~~l~ell~~sDv-V~l~~p~t~~T~~li~~~~ 249 (294)
.+ ++|||+||+|+ . ++.+. .+++++++.+|. .++ +|+ ++|++ |+.++
T Consensus 207 ~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~~~ 283 (419)
T 1gtm_A 207 WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSV-KDF-PGATN-ITNEE 283 (419)
T ss_dssp CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECHHH
T ss_pred CcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCHHH
Confidence 66 99999999999 4 65442 158888886664 444 687 78999 78877
Q ss_pred c------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCcCCCCC
Q psy5259 250 F------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPAD-HPLVQLDNC 294 (294)
Q Consensus 250 ~------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~-~~l~~~~nv 294 (294)
| ||.+||+++ +++|+++.|.+++ +||++++ ++|++++||
T Consensus 284 l~~mk~dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V 335 (419)
T 1gtm_A 284 LLELEVDVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGI 335 (419)
T ss_dssp HHHSCCSEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTC
T ss_pred HHhCCCCEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCE
Confidence 7 999999999 6999999999988 9998754 799999886
No 45
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=98.27 E-value=9.2e-07 Score=82.89 Aligned_cols=88 Identities=9% Similarity=0.112 Sum_probs=64.1
Q ss_pred CCCchhHHHhhc-cceEEEcCCCC--CCCCHHHHH-----------HHccCCcEEEeCCCCCC----CHHHHhhcCCCce
Q psy5259 14 PRVSPAYDILED-MFDIITYPISE--GRMPRDIFI-----------EKLKGCSALLCNPHQKV----DKEALDESGENLK 75 (294)
Q Consensus 14 ~~~~~~~~~l~~-~~~v~~~~~~~--~~~~~e~~~-----------~~l~~~d~~~~~~~~~~----~~~~l~~~~~~lk 75 (294)
+..|+..++|.+ +++|..-...+ ...+.+++. +.++++|+++.. ..++ +++.++.+.+..+
T Consensus 17 ~l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~~ 95 (384)
T 1l7d_A 17 AISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKV-QRPMTAEEGTDEVALIKEGAV 95 (384)
T ss_dssp SCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTCE
T ss_pred CCCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEe-cCcccccCCHHHHHhhccCCE
Confidence 344677777776 67886632211 135666666 456789998865 3466 7888988877889
Q ss_pred EEEeccccCcccChhhHhhCCcEEeec
Q psy5259 76 VISTFSVGHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 76 ~i~~~~~G~d~id~~~~~~~gI~v~~~ 102 (294)
+++....+.|+.+++.+.++||.+.+.
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~gi~~~~~ 122 (384)
T 1l7d_A 96 LMCHLGALTNRPVVEALTKRKITAYAM 122 (384)
T ss_dssp EEEECCGGGCHHHHHHHHHTTCEEEEG
T ss_pred EEEEecccCCHHHHHHHHHCCCEEEEe
Confidence 998888889999999999999988764
No 46
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=98.25 E-value=2.2e-06 Score=81.28 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=79.8
Q ss_pred Eeecccccc-ccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEE
Q psy5259 129 TFSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTV 207 (294)
Q Consensus 129 ~~~~G~d~i-d~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktv 207 (294)
..++|+..+ ......+.+|+|.|++....++..+...+..-.+...+. + ..+ .++.||++
T Consensus 154 eTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~---r--------------atg--~~L~GktV 214 (436)
T 3h9u_A 154 ETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIK---R--------------ATD--VMIAGKTA 214 (436)
T ss_dssp CSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---H--------------HHC--CCCTTCEE
T ss_pred ccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHH---H--------------hcC--CcccCCEE
Confidence 335565443 234456789999999987777755555543332222221 0 113 68999999
Q ss_pred EEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-----
Q psy5259 208 GIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF----- 250 (294)
Q Consensus 208 gIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~----- 250 (294)
||+|+ ..+++..++++++++||+|++ ++.|+++|+++.|
T Consensus 215 gIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~ 290 (436)
T 3h9u_A 215 CVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRD 290 (436)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCT
T ss_pred EEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCC
Confidence 99999 234566799999999999996 6689999999998
Q ss_pred --------cCcC-CCHHHHHHH
Q psy5259 251 --------RGGL-LDQEALVEF 263 (294)
Q Consensus 251 --------RG~l-vde~aL~~a 263 (294)
||.. ||.++|.+.
T Consensus 291 gAIVINvgRg~vEID~~~L~~~ 312 (436)
T 3h9u_A 291 DAIVCNIGHFDTEIQVAWLKAN 312 (436)
T ss_dssp TEEEEECSSSGGGBCHHHHHHH
T ss_pred CcEEEEeCCCCCccCHHHHHhh
Confidence 9986 999999874
No 47
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=97.97 E-value=1.9e-06 Score=81.37 Aligned_cols=155 Identities=14% Similarity=0.215 Sum_probs=104.4
Q ss_pred cCcceEEEeeccccccccchhh-----ccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccc-ccc
Q psy5259 122 KNLKVISTFSVGHDHLHLDQIK-----SRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQT-QTV 195 (294)
Q Consensus 122 ~~Lk~i~~~~~G~d~id~~~~~-----~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~-~~~ 195 (294)
..++.+...++|+|++++.+.. ++++.+++.+|. ..+++++....++.+.|++....... .+.|..... ...
T Consensus 80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~ 157 (404)
T 1gpj_A 80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVEL 157 (404)
T ss_dssp HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHH
T ss_pred hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHH
Confidence 4567777889999999998887 888888888777 46899999999999999887665433 445531100 000
Q ss_pred ccc-ccCcCCCEEEEEcc----------------------------------cCCCc---ccCHHHHhccCCEEEEecCC
Q psy5259 196 ISD-IIGLNGSTVGIVGT----------------------------------ELGAQ---LVPLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 196 ~g~-~~~l~gktvgIiG~----------------------------------~~~~~---~~~l~ell~~sDvV~l~~p~ 237 (294)
.+. ..++.|++++|+|. .++.. +.+++++++.+|+|+.|+|
T Consensus 158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~- 236 (404)
T 1gpj_A 158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA- 236 (404)
T ss_dssp HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS-
T ss_pred HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccC-
Confidence 000 02579999999999 11222 2357788899999999976
Q ss_pred CcccccccccccccCcCCCHHHHHH-HHHc--CCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259 238 TKDTEQLIGRKQFRGGLLDQEALVE-FLRD--KKIGGAGLDVMIPEPMPADHPLVQLDNC 294 (294)
Q Consensus 238 t~~T~~li~~~~~RG~lvde~aL~~-aL~~--g~i~ga~LDV~~~EP~~~~~~l~~~~nv 294 (294)
.+.++ ++.+.+.. .++. +. ....+|+.. |.+.+.+++++|||
T Consensus 237 --~~~~~----------~~~~~l~~~~lk~r~~~-~~v~vdia~--P~~i~~~l~~l~~v 281 (404)
T 1gpj_A 237 --APHPV----------IHVDDVREALRKRDRRS-PILIIDIAN--PRDVEEGVENIEDV 281 (404)
T ss_dssp --SSSCC----------BCHHHHHHHHHHCSSCC-CEEEEECCS--SCSBCTTGGGSTTE
T ss_pred --CCCce----------ecHHHHHHHHHhccCCC-CEEEEEccC--CCCCCccccccCCe
Confidence 44444 34444444 3542 22 235788875 65556799999986
No 48
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=97.71 E-value=2.8e-05 Score=73.82 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=50.5
Q ss_pred cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259 200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~ 247 (294)
..+.|||+||+|+ ..+++..++++++++||+|+.+. .|+|+|++
T Consensus 243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~~ 318 (464)
T 3n58_A 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVITI 318 (464)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBCH
T ss_pred CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccCH
Confidence 7899999999999 13455678999999999999853 58999999
Q ss_pred ccc-------------cCcC-CCHHHHHH
Q psy5259 248 KQF-------------RGGL-LDQEALVE 262 (294)
Q Consensus 248 ~~~-------------RG~l-vde~aL~~ 262 (294)
+.| ||.. ||+++|.+
T Consensus 319 e~l~~MK~GAILINvGRgdvEID~~aL~~ 347 (464)
T 3n58_A 319 DHMRKMKDMCIVGNIGHFDNEIQVAALRN 347 (464)
T ss_dssp HHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred HHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence 998 9998 99988874
No 49
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=97.40 E-value=0.00016 Score=68.33 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=74.3
Q ss_pred CcceEE-Eeecccccc-ccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccccc
Q psy5259 123 NLKVIS-TFSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDII 200 (294)
Q Consensus 123 ~Lk~i~-~~~~G~d~i-d~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~ 200 (294)
+++=+. ..++|+-.+ ......+..++|.|+.+....+--+...+.--.+. .... + ..+ .
T Consensus 156 ~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~----~gi~--------r-----at~--~ 216 (435)
T 3gvp_A 156 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESIL----DGLK--------R-----TTD--M 216 (435)
T ss_dssp TCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHH----HHHH--------H-----HHC--C
T ss_pred hcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHH----HHHH--------H-----hhC--c
Confidence 444333 335565433 23334467899999988766665553333211111 1110 0 113 6
Q ss_pred CcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259 201 GLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 201 ~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
.+.||+++|+|+ ..+++..++++++++||+|+++ +.|+++|+++
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e 292 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVTRE 292 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHH
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCCHH
Confidence 889999999999 2244567899999999999994 5789999988
Q ss_pred cc-------------cCcC-CCHHHHH
Q psy5259 249 QF-------------RGGL-LDQEALV 261 (294)
Q Consensus 249 ~~-------------RG~l-vde~aL~ 261 (294)
.| ||.. ||.++|.
T Consensus 293 ~l~~MK~gailINvgrg~~EId~~~L~ 319 (435)
T 3gvp_A 293 HLDRMKNSCIVCNMGHSNTEIDVASLR 319 (435)
T ss_dssp HHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred HHHhcCCCcEEEEecCCCccCCHHHHH
Confidence 88 8877 7877664
No 50
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=97.18 E-value=0.0012 Score=60.88 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=37.8
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|++++.++||.| ... ...-++-+.=+.+++.
T Consensus 83 ~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V---~n~-~g~~~~~vAE~~~~l~ 131 (351)
T 3jtm_A 83 KAKNLKLLLTAGIGSDHIDLQAAAAAGLTV---AEV-TGSNVVSVAEDELMRI 131 (351)
T ss_dssp HCSSCCEEEESSSCCTTBCHHHHHHTTCEE---EEC-TTTTHHHHHHHHHHHH
T ss_pred hCCCCeEEEEeCeeecccCHHHHHhcCeeE---EEC-CCcCchHHHHHHHHHH
Confidence 679999999999999999999999999999 332 2344555555555554
No 51
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=97.12 E-value=0.0002 Score=64.28 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=49.6
Q ss_pred HHHHHHccCCcEEEeCCCCCCCH-HHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHH
Q psy5259 42 DIFIEKLKGCSALLCNPHQKVDK-EALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120 (294)
Q Consensus 42 e~~~~~l~~~d~~~~~~~~~~~~-~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~ 120 (294)
+++++.++.-..++. +.+.++- +.+.+ .++.+..+.. ...++++++.+|||+++++++.
T Consensus 88 ~~~l~~~~~l~~i~~-G~d~id~~~~~~~--~gi~v~~~~~-----------------~~~~~~~~~~svae~a~~~~l~ 147 (293)
T 3d4o_A 88 EEMIEKTPNHCVVYS-GISNTYLNQCMKK--TNRTLVKLME-----------------RDDIAIYNSIPTAEGTIMMAIQ 147 (293)
T ss_dssp HHHHHTSCTTCEEEE-SSCCHHHHHHHHH--HTCEEEEGGG-----------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEe-cCCCHHHHHHHHH--cCCeEEEecC-----------------CceeeeeccHhHHHHHHHHHHH
Confidence 556677777666663 3445542 33333 3455554431 0134567889999999998876
Q ss_pred ccCcceEEEeeccccccccchhhccCcEEEeeC-CCchHHHHHHHHH
Q psy5259 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIG 166 (294)
Q Consensus 121 ~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~-~~~~~~VAE~al~ 166 (294)
... ..-+|.++...+ |..+..+|....+
T Consensus 148 ~~~------------------~~l~g~~v~IiG~G~iG~~~a~~l~~ 176 (293)
T 3d4o_A 148 HTD------------------FTIHGANVAVLGLGRVGMSVARKFAA 176 (293)
T ss_dssp HCS------------------SCSTTCEEEEECCSHHHHHHHHHHHH
T ss_pred hcC------------------CCCCCCEEEEEeeCHHHHHHHHHHHh
Confidence 421 112345555544 6666777766554
No 52
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=96.95 E-value=0.00096 Score=61.22 Aligned_cols=49 Identities=35% Similarity=0.417 Sum_probs=38.0
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|+++++++||.| ....+ .-++-+.=+.+++.
T Consensus 61 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~p~-~~~~~vAE~~~~l~ 109 (334)
T 2pi1_A 61 KMPRLKLIHTRSVGFDHIDLDYCKKKGILV---THIPA-YSPESVAEHTFAMI 109 (334)
T ss_dssp TCTTCCEEEESSSCCTTBCHHHHHHHTCEE---ECCTT-SCHHHHHHHHHHHH
T ss_pred hCCCCeEEEECCccccccCHHHHHHCCeEE---EECCC-cCcHHHHHHHHHHH
Confidence 568999999999999999999999999999 33333 33555555566554
No 53
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=96.93 E-value=0.002 Score=59.37 Aligned_cols=49 Identities=31% Similarity=0.475 Sum_probs=38.6
Q ss_pred Hc-cCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AV-KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~-~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++ ++||+|++.++|+|++|+++++++||.| ... ....++-+.=+.+++.
T Consensus 90 ~~~~~Lk~I~~~~~G~D~id~~~a~~~gI~V---~n~-pg~~~~~vAE~a~~l~ 139 (345)
T 4g2n_A 90 KLQPGLKTIATLSVGYDHIDMAAARSLGIKV---LHT-PDVLSDACAEIAMLLV 139 (345)
T ss_dssp HTTTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-CSCCHHHHHHHHHHHH
T ss_pred hhcCCceEEEEcCCcccccCHHHHHhCCEEE---EEC-CcccchHHHHHHHHHH
Confidence 55 7999999999999999999999999999 332 3355666666666664
No 54
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=96.92 E-value=0.0023 Score=58.59 Aligned_cols=49 Identities=29% Similarity=0.397 Sum_probs=38.9
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|+++++++||.| ... ....++-+.=+.+++.
T Consensus 64 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-~~~~~~~vAE~~~~~~ 112 (330)
T 4e5n_A 64 ACPELRVIGCALKGFDNFDVDACTARGVWL---TFV-PDLLTVPTAELAIGLA 112 (330)
T ss_dssp HCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-SSTTHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCcccccCHHHHHhcCcEE---EeC-CCCCchHHHHHHHHHH
Confidence 569999999999999999999999999999 332 3345666666666554
No 55
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=96.81 E-value=0.0014 Score=60.53 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=53.1
Q ss_pred CcCCCEEEEEcc--------------------------------cCCCcccCHHHHhc-cCCEEEEecCCCccccccccc
Q psy5259 201 GLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCA-QSDFIFVTCALTKDTEQLIGR 247 (294)
Q Consensus 201 ~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~-~sDvV~l~~p~t~~T~~li~~ 247 (294)
++.|||++|+|+ .++.++.+++++|+ .||+++. .+|.+.||+
T Consensus 172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP-----~A~~~~I~~ 246 (355)
T 1c1d_A 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP-----CAMGGVITT 246 (355)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEE-----CSCSCCBCH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecH-----hHHHhhcCH
Confidence 799999999999 13445667889998 8999984 368889988
Q ss_pred ccc------------cCcCCCHHHHHHHHHcCCceE
Q psy5259 248 KQF------------RGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 248 ~~~------------RG~lvde~aL~~aL~~g~i~g 271 (294)
+.+ ||.+++++| .++|+++.|..
T Consensus 247 ~~~~~lk~~iVie~AN~p~t~~eA-~~~L~~~gIlv 281 (355)
T 1c1d_A 247 EVARTLDCSVVAGAANNVIADEAA-SDILHARGILY 281 (355)
T ss_dssp HHHHHCCCSEECCSCTTCBCSHHH-HHHHHHTTCEE
T ss_pred HHHhhCCCCEEEECCCCCCCCHHH-HHHHHhCCEEE
Confidence 665 999999888 59999998863
No 56
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=96.77 E-value=0.0006 Score=62.32 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=38.5
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|++++.++||.| .... ...++-+.=+.+++.
T Consensus 58 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~~-g~~~~~vAE~~~~~~ 106 (324)
T 3evt_A 58 PTNQLKFVQVISAGVDYLPLKALQAAGVVV---ANTS-GIHADAISESVLAAM 106 (324)
T ss_dssp TTCCCCEEECSSSCCTTSCHHHHHHTTCEE---ECCT-THHHHHHHHHHHHHH
T ss_pred hCCCceEEEECCccccccCHHHHHHCCcEE---EECC-CcCchHHHHHHHHHH
Confidence 469999999999999999999999999999 3332 344565555666554
No 57
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=96.70 E-value=0.0037 Score=56.90 Aligned_cols=49 Identities=37% Similarity=0.636 Sum_probs=37.6
Q ss_pred HccC-cceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKN-LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~-Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++ ||+|++.++|+|++|++.++++||.| .... ...++-+.=+.+++.
T Consensus 63 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~p-~~~~~~vAE~~~~l~ 112 (320)
T 1gdh_A 63 RIPENIKCISTYSIGFDHIDLDACKARGIKV---GNAP-HGVTVATAEIAMLLL 112 (320)
T ss_dssp HSCTTCCEEEEESSCCTTBCHHHHHHTTCEE---ECCC-CSCHHHHHHHHHHHH
T ss_pred hCCccceEEEECCcccccccHHHHHhCCcEE---EEcC-CCCHHHHHHHHHHHH
Confidence 5688 99999999999999999999999999 3322 234555555556554
No 58
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=96.68 E-value=0.0033 Score=58.27 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=37.7
Q ss_pred HHccCcceEEEeeccccccccchhhcc--CcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 119 IAVKNLKVISTFSVGHDHLHLDQIKSR--GIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 119 l~~~~Lk~i~~~~~G~d~id~~~~~~~--GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.++++||+|+..++|+|++|++++.++ ||.| ... ....++-+.=+.+++.
T Consensus 80 ~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V---~n~-pg~~~~~vAE~~~~~~ 131 (364)
T 2j6i_A 80 DKAKKLKLVVVAGVGSDHIDLDYINQTGKKISV---LEV-TGSNVVSVAEHVVMTM 131 (364)
T ss_dssp HHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEE---EEC-TTSSHHHHHHHHHHHH
T ss_pred hhCCCCeEEEECCcccccccHHHHHhcCCCEEE---EEC-CCcCcHHHHHHHHHHH
Confidence 367999999999999999999999999 9999 332 2334555555555554
No 59
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=96.63 E-value=0.0038 Score=57.21 Aligned_cols=49 Identities=35% Similarity=0.407 Sum_probs=37.8
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||+|++.++|+|++|+++++++||.| ... ...-++-+.=+.+++.
T Consensus 61 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-p~~~~~~vAE~~~~l~ 109 (334)
T 3kb6_A 61 KMPRLKLIHTRSVGFDHIDLDYCKKKGILV---THI-PAYSPESVAEHTFAMI 109 (334)
T ss_dssp TCTTCCEEEESSSCCTTBCHHHHHHHTCEE---ECC-TTSCHHHHHHHHHHHH
T ss_pred cCCCCcEEEECCcccchhcHHHHHHCCCEE---EEC-CCcCcHHHHHHHHHHH
Confidence 679999999999999999999999999999 332 2344555555555554
No 60
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=96.59 E-value=0.0047 Score=56.46 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=37.8
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||+|+..++|+|++|+++++++||.| .... ...++-+.=+.+++.
T Consensus 64 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~~-~~~~~~vAE~~~~~~ 112 (334)
T 2dbq_A 64 NAPKLRIVANYAVGYDNIDIEEATKRGIYV---TNTP-DVLTDATADLAFALL 112 (334)
T ss_dssp TCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECCC-STTHHHHHHHHHHHH
T ss_pred hCCCceEEEECCcccccccHHHHHhCCCEE---EeCC-CcCHHHHHHHHHHHH
Confidence 569999999999999999999999999999 3332 334555555556554
No 61
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=96.41 E-value=0.0034 Score=57.69 Aligned_cols=49 Identities=27% Similarity=0.384 Sum_probs=39.1
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||+|++.++|+|++|+++++++||.| ... ....++-+.=+.+++.
T Consensus 90 ~~p~Lk~I~~~g~G~d~id~~~a~~~gI~V---~n~-pg~~~~~vAE~a~~l~ 138 (340)
T 4dgs_A 90 KLPSLGIIAINGVGTDKVDLARARRRNIDV---TTT-PGVLADDVADLGIALM 138 (340)
T ss_dssp HCSSCCEEEEESSCCTTBCHHHHHHTTCEE---ECC-CSSSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccccCHHHHHhCCEEE---EEC-CCCCcchHHHHHHHHH
Confidence 679999999999999999999999999999 332 3345666666666554
No 62
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=96.24 E-value=0.0082 Score=56.21 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=38.2
Q ss_pred HHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 119 l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
-++++||+|++.++|+|++|+++++++||.| ... ...-++-+.=+.+++.
T Consensus 109 ~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V---~n~-~g~~~~~VAE~al~li 158 (393)
T 2nac_A 109 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTV---AEV-TYCNSISVAEHVVMMI 158 (393)
T ss_dssp HHCTTCCEEEESSSCCTTBCHHHHHHTTCEE---EEC-TTTTHHHHHHHHHHHH
T ss_pred hhCCCCcEEEEcCccccccCHHHHhcCCEEE---EeC-CCcccHHHHHHHHHHH
Confidence 3679999999999999999999999999999 332 3334555555555553
No 63
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=96.17 E-value=0.0099 Score=54.19 Aligned_cols=49 Identities=55% Similarity=0.766 Sum_probs=37.9
Q ss_pred Hc-cCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AV-KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~-~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++ ++||+|+..++|+|++|++.++++||.| .... ...++-+.-+.+++.
T Consensus 72 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~~-~~~~~~vAe~~~~~~ 121 (330)
T 2gcg_A 72 AAGANLKVISTMSVGIDHLALDEIKKRGIRV---GYTP-DVLTDTTAELAVSLL 121 (330)
T ss_dssp HHCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECCC-STTHHHHHHHHHHHH
T ss_pred hcCCCceEEEECCcccccccHHHHHhCCceE---EeCC-CCChHHHHHHHHHHH
Confidence 56 8999999999999999999999999999 3333 334555555555554
No 64
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=96.11 E-value=0.0045 Score=56.96 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=12.6
Q ss_pred cCcceEEEeecccc
Q psy5259 122 KNLKVISTFSVGHD 135 (294)
Q Consensus 122 ~~Lk~i~~~~~G~d 135 (294)
.+||+|+..++|+|
T Consensus 69 ~~Lk~I~~~~~G~d 82 (343)
T 2yq5_A 69 YGVKCIGLRIVGFN 82 (343)
T ss_dssp TTCCEEEESSSCCT
T ss_pred cCceEEEECceeec
Confidence 47999999999987
No 65
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=96.03 E-value=0.0065 Score=57.29 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=39.3
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||+|++.++|+|++|+++|+++||.| -. ....-++-+.=+.+++.
T Consensus 77 ~~p~Lk~I~~~~~G~d~IDl~~a~~~GI~V---~n-~p~~n~~aVAE~~l~l~ 125 (416)
T 3k5p_A 77 AANRLIAVGCFSVGTNQVELKAARKRGIPV---FN-APFSNTRSVAELVIGEI 125 (416)
T ss_dssp HCTTCCEEEECSSCCTTBCHHHHHHTTCCE---EC-CSSTTHHHHHHHHHHHH
T ss_pred hCCCcEEEEECccccCccCHHHHHhcCcEE---Ee-CCCcccHHHHHHHHHHH
Confidence 679999999999999999999999999999 32 23445666666666654
No 66
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=96.01 E-value=0.009 Score=54.08 Aligned_cols=49 Identities=39% Similarity=0.612 Sum_probs=38.3
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|+++++++||.| .... ...++-+.=+.+++.
T Consensus 62 ~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v---~n~~-~~~~~~vAE~~~~~~ 110 (311)
T 2cuk_A 62 RAKGLKVIACYSVGVDHVDLEAARERGIRV---THTP-GVLTEATADLTLALL 110 (311)
T ss_dssp HSTTCCEEECSSSCCTTBCHHHHHTTTCEE---ECCC-STTHHHHHHHHHHHH
T ss_pred hCCCCeEEEECCcCccccCHHHHHhCCcEE---EECC-CCChHHHHHHHHHHH
Confidence 568999999999999999999999999999 3332 345565555566554
No 67
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=95.94 E-value=0.0088 Score=54.73 Aligned_cols=49 Identities=33% Similarity=0.535 Sum_probs=38.4
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|++.++|+|++|+++++++||.| ... ....++-+.=+.+++.
T Consensus 84 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-pg~~~~~vAE~~~~l~ 132 (333)
T 3ba1_A 84 ALPKLEIVSSFSVGLDKVDLIKCEEKGVRV---TNT-PDVLTDDVADLAIGLI 132 (333)
T ss_dssp HCTTCCEEEESSSCCTTBCHHHHHHHTCEE---ECC-CSTTHHHHHHHHHHHH
T ss_pred hCCCCcEEEEcCccccccCHHHHHhCCcEE---EEC-CCcchHHHHHHHHHHH
Confidence 679999999999999999999999999999 332 3345665555666554
No 68
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=95.93 E-value=0.0097 Score=54.39 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=36.3
Q ss_pred HccC--cceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~--Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++ ||+|+..++|+|++|+++++++||.| ....+ ..++-+.=+.+++.
T Consensus 65 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~p~-~~~~~vAE~~~~l~ 115 (333)
T 1j4a_A 65 ALADNGITKMSLRNVGVDNIDMAKAKELGFQI---TNVPV-YSPNAIAEHAAIQA 115 (333)
T ss_dssp HHHHTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECCCC-SCHHHHHHHHHHHH
T ss_pred hccccCCeEEEECCcccccccHHHHHhCCCEE---EeCCC-CCchHHHHHHHHHH
Confidence 4455 99999999999999999999999999 33322 34455555555553
No 69
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=95.90 E-value=0.011 Score=53.31 Aligned_cols=49 Identities=29% Similarity=0.402 Sum_probs=38.1
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|++.++|+|++|++.++++||.| ... ....++-+.=+.+++.
T Consensus 63 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~-~g~~~~~vAE~~~~~~ 111 (307)
T 1wwk_A 63 SAPKLKVIARAGVGLDNIDVEAAKEKGIEV---VNA-PAASSRSVAELAVGLM 111 (307)
T ss_dssp TCTTCCEEEESSSCCTTBCHHHHHHHTCEE---ECC-GGGGHHHHHHHHHHHH
T ss_pred hCCCCeEEEECCccccccCHHHHHhCCcEE---EEC-CCCChHHHHHHHHHHH
Confidence 568999999999999999999999999999 333 3345555555556554
No 70
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=95.88 E-value=0.0079 Score=55.10 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=37.5
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|++.++|+|++|+++++++||.| .... ...++-+.=+.+++.
T Consensus 86 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~p-~~~~~~vAE~~~~l~ 134 (335)
T 2g76_A 86 AAEKLQVVGRAGTGVDNVDLEAATRKGILV---MNTP-NGNSLSAAELTCGMI 134 (335)
T ss_dssp HCSSCCEEEESSSSCTTBCHHHHHHHTCEE---ECCS-STTHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCCcchhChHHHHhCCeEE---EECC-CccchHHHHHHHHHH
Confidence 579999999999999999999999999999 3322 334555555555553
No 71
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=95.78 E-value=0.024 Score=51.70 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=36.4
Q ss_pred HccC--cceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~--Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++ ||+|+..++|+|++|+++++++||.| .... ..-++-+.-+.+++.
T Consensus 64 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~p-~~~~~~vAE~~~~l~ 114 (331)
T 1xdw_A 64 IYKKLGVKYILTRTAGTDHIDKEYAKELGFPM---AFVP-RYSPNAIAELAVTQA 114 (331)
T ss_dssp HHHHHTCCEEEESSSCCTTBCHHHHHHTTCCE---ECCC-CCCHHHHHHHHHHHH
T ss_pred hCcccCceEEEEccccccccCHHHHHhCCcEE---EeCC-CCCcHHHHHHHHHHH
Confidence 4455 99999999999999999999999999 3332 234455555555554
No 72
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=95.70 E-value=0.013 Score=55.12 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=38.6
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||+|++.++|+|++|+++++++||.| .. ....-++-+.=+.+++.
T Consensus 66 ~~~~Lk~I~~~~~G~d~iD~~~a~~~GI~V---~n-~p~~n~~~vAE~~~~~~ 114 (404)
T 1sc6_A 66 AAEKLVAIGAFAIGTNQVDLDAAAKRGIPV---FN-APFSNTRSVAELVIGEL 114 (404)
T ss_dssp HCSSCCEEEECSSCCTTBCHHHHHHTTCCE---EC-CTTTTHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCcccCccCHHHHHhCCCEE---Ee-cCcccHHHHHHHHHHHH
Confidence 569999999999999999999999999999 22 23455666666666554
No 73
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=95.58 E-value=0.017 Score=52.73 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=36.2
Q ss_pred HccC--cceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~--Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++ ||+|++.++|+|++|+++++++||.| .... ..-++-+.=+.+++.
T Consensus 63 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~p-~~~~~~vAE~~~~l~ 113 (333)
T 1dxy_A 63 KMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL---SNVP-AYSPAAIAEFALTDT 113 (333)
T ss_dssp HHHHTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECCT-TSCHHHHHHHHHHHH
T ss_pred hCcccCceEEEEcCcccCccCHHHHHhCCCEE---EeCC-CCCchHHHHHHHHHH
Confidence 4455 99999999999999999999999999 3332 234455555555553
No 74
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=95.50 E-value=0.0092 Score=54.54 Aligned_cols=49 Identities=33% Similarity=0.459 Sum_probs=38.3
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||+|++.++|+|++|+++++++||.| ... ....++-+.-+.+++.
T Consensus 61 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~-~~~~~~~vAE~~~~~~ 109 (333)
T 2d0i_A 61 NAERLKVISCHSAGYDNIDLEEATKRGIYV---TKV-SGLLSEAVAEFTVGLI 109 (333)
T ss_dssp TCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-CHHHHHHHHHHHHHHH
T ss_pred hCCCceEEEECCcccccccHHHHHhCCcEE---EeC-CCcChHHHHHHHHHHH
Confidence 568999999999999999999999999999 332 3345565555566554
No 75
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=95.49 E-value=0.022 Score=52.51 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=39.2
Q ss_pred HccCcceEEEeeccc----cccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGH----DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~----d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|++.++|+ |++|+++++++||.| .|+...++-+.=+.+++.
T Consensus 68 ~~~~Lk~I~~~g~G~~~~~d~id~~~a~~~gI~V-----~n~pg~~~~vAE~al~l~ 119 (352)
T 3gg9_A 68 RLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVV-----LEGKGSPVAPAELTWALV 119 (352)
T ss_dssp TCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEE-----ECCCCCSHHHHHHHHHHH
T ss_pred hCCCCeEEEEeCcccCCccCcccHHHHHhCCeEE-----EECCCCcHHHHHHHHHHH
Confidence 569999999999999 999999999999999 454444676655666654
No 76
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=95.46 E-value=0.013 Score=53.03 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=37.9
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||+|++.++|+|++|++.+.++||.| ... ....++-+.=+.+++.
T Consensus 65 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~-~g~~~~~vAE~~~~~~ 113 (313)
T 2ekl_A 65 KGKKLKIIARAGIGLDNIDTEEAEKRNIKV---VYA-PGASTDSAVELTIGLM 113 (313)
T ss_dssp HCTTCCEEEECSSCCTTBCHHHHHHTTCEE---ECC-TTTTHHHHHHHHHHHH
T ss_pred hCCCCeEEEEcCCCCCccCHHHHHhCCeEE---EeC-CCCCchHHHHHHHHHH
Confidence 569999999999999999999999999999 333 2334555555555554
No 77
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=95.03 E-value=0.019 Score=52.78 Aligned_cols=49 Identities=27% Similarity=0.372 Sum_probs=37.4
Q ss_pred Hcc-CcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVK-NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~-~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
+++ +||+|++.++|+|++|+++++++||.| ... ....++-+.=+.+++.
T Consensus 76 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-p~~~~~~vAe~~~~l~ 125 (348)
T 2w2k_A 76 HLPSSLKVFAAAGAGFDWLDLDALNERGVAF---ANS-RGAGDTATSDLALYLI 125 (348)
T ss_dssp TSCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-TTTTHHHHHHHHHHHH
T ss_pred hcccCceEEEECCccccccCHHHHHhCCcEE---EEC-CCCCcHHHHHHHHHHH
Confidence 556 699999999999999999999999999 332 2334555555556554
No 78
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=95.01 E-value=0.014 Score=54.07 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=38.0
Q ss_pred HccCcceEEEe-eccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~-~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||+|+.. ++|+|++|+++++++||.| . ......++-+.=+.+++.
T Consensus 93 ~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V---~-n~~~~~~~~vAE~~l~l~ 142 (365)
T 4hy3_A 93 RMPALRSILNVESNLLNNMPYEVLFQRGIHV---V-TTGQVFAEPVAEIGLGFA 142 (365)
T ss_dssp TCTTCCEEECCSSSCCSCSCTTHHHHSCCEE---E-ECGGGGHHHHHHHHHHHH
T ss_pred hCCCCeEEEEecccccCcccHHHHhcCCeEE---E-eCCCccchHHHHHHHHHH
Confidence 56999999975 8999999999999999999 3 233455666666666554
No 79
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=94.75 E-value=0.017 Score=52.61 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=27.0
Q ss_pred HhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeecccccccc
Q psy5259 92 IKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHL 139 (294)
Q Consensus 92 ~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~ 139 (294)
+++..+.+++. .-.++ .+..+++||+|+..++|+|++|+
T Consensus 45 ~~~ad~li~~~-----~~~~~----~l~~~~~Lk~I~~~~~G~d~id~ 83 (324)
T 3hg7_A 45 IGEAHILMAEP-----ARAKP----LLAKANKLSWFQSTYAGVDVLLD 83 (324)
T ss_dssp GGGCSEEEECH-----HHHGG----GGGGCTTCCEEEESSSCCGGGSC
T ss_pred hCCCEEEEECC-----CCCHH----HHhhCCCceEEEECCCCCCccCh
Confidence 56667777643 11111 23356999999999999999986
No 80
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=94.48 E-value=0.012 Score=51.48 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=28.4
Q ss_pred CCHHHHHHHccC----CcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccCh
Q psy5259 39 MPRDIFIEKLKG----CSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHL 89 (294)
Q Consensus 39 ~~~e~~~~~l~~----~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~ 89 (294)
.+.+++.+.+++ +.++.+ ..++.++++..+ ++++-++....|+|.++.
T Consensus 38 ~~~~~l~~~i~~l~~~~~G~~v--t~P~k~~i~~~~-~~l~~~a~~~gavn~i~~ 89 (263)
T 2d5c_A 38 TPLEALPGRLKEVRRAFRGVNL--TLPLKEAALAHL-DWVSPEAQRIGAVNTVLQ 89 (263)
T ss_dssp CCGGGHHHHHHHHHHHCSEEEE--CTTCTTGGGGGC-SEECHHHHHHTCCCEEEE
T ss_pred CCHHHHHHHHHhccccCceEEE--cccCHHHHHHHH-HHHhHHHHHhCCCCcEEc
Confidence 345555555544 344444 347778887765 666666666667777654
No 81
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=94.26 E-value=0.019 Score=52.79 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=38.6
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|+..++|+|++|+++++++||.| ....+ ..++-+.=+.+++.
T Consensus 82 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V---~n~~~-~~~~~vAE~~~~l~ 130 (347)
T 1mx3_A 82 KFKALRIIVRIGSGFDNIDIKSAGDLGIAV---CNVPA-ASVEETADSTLCHI 130 (347)
T ss_dssp TCSSCCEEEESSSCCTTBCHHHHHHTTCEE---ECCCS-TTHHHHHHHHHHHH
T ss_pred hCCCCCEEEEcccccCcccHHHHHhCCceE---EECCC-CCHHHHHHHHHHHH
Confidence 568999999999999999999999999999 44333 34566655666554
No 82
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=94.00 E-value=0.043 Score=51.06 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=27.4
Q ss_pred ccCcceEEEeeccccccccchhhccCcEE
Q psy5259 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRV 149 (294)
Q Consensus 121 ~~~Lk~i~~~~~G~d~id~~~~~~~GI~v 149 (294)
.++||+|+..++|+|++|++.++++||.|
T Consensus 59 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v 87 (381)
T 3oet_A 59 GTPINFVGTATAGTDHVDEAWLKQAGIGF 87 (381)
T ss_dssp TSCCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred CCCCEEEEEccccccccCHHHHHhCCEEE
Confidence 36799999999999999999999999999
No 83
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=93.83 E-value=0.047 Score=52.93 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=37.8
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
++++||+|++.++|+|++|+++++++||.| ... ...-++-+.=+.+++.
T Consensus 63 ~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v---~n~-p~~~~~~vAE~~~~~~ 111 (529)
T 1ygy_A 63 AAPKLKIVARAGVGLDNVDVDAATARGVLV---VNA-PTSNIHSAAEHALALL 111 (529)
T ss_dssp TCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-TTSSHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCcCcCccCHhHHHhCCeEE---EEC-CCcchHHHHHHHHHHH
Confidence 569999999999999999999999999999 332 2344555555555554
No 84
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=93.46 E-value=0.012 Score=56.39 Aligned_cols=85 Identities=18% Similarity=0.101 Sum_probs=58.4
Q ss_pred CCceEEE-eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHcc-CcceEEEeeccccccccchhhccCcEE
Q psy5259 72 ENLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK-NLKVISTFSVGHDHLHLDQIKSRGIRV 149 (294)
Q Consensus 72 ~~lk~i~-~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~-~Lk~i~~~~~G~d~id~~~~~~~GI~v 149 (294)
|+++.|+ ..++|+|++ +.++++||.++|++++++ +|+|+.+-.+..++ .++ .|... .....-.|.+|
T Consensus 192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae~l~r~~~~~~~~l~------~gw~r--~~~~~l~GktV 260 (479)
T 1v8b_A 192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTKQKYDNVYGCRHSLP------DGLMR--ATDFLISGKIV 260 (479)
T ss_dssp TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHHHTTHHHHHHHHHHH------HHHHH--HHCCCCTTSEE
T ss_pred cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHHHHHhchHhHHHHHh------hhhhh--ccccccCCCEE
Confidence 7899999 889999998 889999999999999999 99995432222221 110 11100 00112356677
Q ss_pred EeeC-CCchHHHHHHHHHH
Q psy5259 150 GTVG-PVSSDAVAEFNIGL 167 (294)
Q Consensus 150 ~~~~-~~~~~~VAE~al~l 167 (294)
...+ |..+.++|..+.++
T Consensus 261 gIIG~G~IG~~vA~~l~~~ 279 (479)
T 1v8b_A 261 VICGYGDVGKGCASSMKGL 279 (479)
T ss_dssp EEECCSHHHHHHHHHHHHH
T ss_pred EEEeeCHHHHHHHHHHHhC
Confidence 7666 78888888888765
No 85
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=93.34 E-value=0.092 Score=46.96 Aligned_cols=48 Identities=23% Similarity=0.137 Sum_probs=29.7
Q ss_pred HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~ 172 (294)
.+++||+|++.++|+|++|++. ..-. ...-.+....++-+.=+.+++.
T Consensus 46 ~~~~Lk~I~~~~~G~d~id~~~---~~~~--~~~~~~~~~~~~~vAE~~~~~~ 93 (290)
T 3gvx_A 46 LGKRTKMIQAISAGVDHIDVNG---IPEN--VVLCSNAGAYSISVAEHAFALL 93 (290)
T ss_dssp CCSSCCEEEECSSCCTTSCGGG---SCTT--SEEECCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhcCCceeecCC---Cccc--eEEeecCCcceeeHHHHHHHHH
Confidence 5699999999999999999752 2211 0111344555554444455544
No 86
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=93.33 E-value=0.013 Score=56.48 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCceEEE-eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEE
Q psy5259 72 ENLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVG 150 (294)
Q Consensus 72 ~~lk~i~-~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~ 150 (294)
|+++.|+ ..++|+|++ ++++++||.++|++++++ +|||+.+-.+..+++-.+ .|.. ......-.|.+|.
T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l~r~~~~~~~~l~-----~gw~--~~~g~~L~GktVg 281 (494)
T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSKFDNLYGCRESLV-----DGIK--RATDVMIAGKIAV 281 (494)
T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHHHHHHHHHHTTHH-----HHHH--HHHCCCCTTCEEE
T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHHHhhhHhhhhhhh-----hhhh--hccccccCCCEEE
Confidence 7899999 889999998 889999999999999999 999976544433322110 1110 0011123566776
Q ss_pred eeC-CCchHHHHHHHHHH
Q psy5259 151 TVG-PVSSDAVAEFNIGL 167 (294)
Q Consensus 151 ~~~-~~~~~~VAE~al~l 167 (294)
..+ |..+..+|..+.++
T Consensus 282 IIG~G~IG~~vA~~l~~~ 299 (494)
T 3d64_A 282 VAGYGDVGKGCAQSLRGL 299 (494)
T ss_dssp EECCSHHHHHHHHHHHTT
T ss_pred EEccCHHHHHHHHHHHHC
Confidence 666 77888888887654
No 87
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=93.14 E-value=0.086 Score=48.72 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=45.3
Q ss_pred CcCCCEEEEEcc---------------------------------cCCCcccCHHHHhc-cCCEEEEecCCCcccccccc
Q psy5259 201 GLNGSTVGIVGT---------------------------------ELGAQLVPLDTLCA-QSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 201 ~l~gktvgIiG~---------------------------------~~~~~~~~l~ell~-~sDvV~l~~p~t~~T~~li~ 246 (294)
++.||||+|+|+ .++.+..+.++++. +||+++.|. +.+.|+
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-----~~~~I~ 244 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVLN 244 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCBS
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-----hHHHhC
Confidence 799999999999 12445567778877 899998763 666777
Q ss_pred cccc------------cCcCCCHHHHHHHHHcCCc
Q psy5259 247 RKQF------------RGGLLDQEALVEFLRDKKI 269 (294)
Q Consensus 247 ~~~~------------RG~lvde~aL~~aL~~g~i 269 (294)
.+.+ ++.+.+++ ..+.|+++.+
T Consensus 245 ~~~~~~lg~~iV~e~An~p~t~~e-a~~~L~~~Gi 278 (364)
T 1leh_A 245 DFTIPQLKAKVIAGSADNQLKDPR-HGKYLHELGI 278 (364)
T ss_dssp TTHHHHCCCSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred HHHHHhCCCcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence 6544 77777755 4466666655
No 88
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=92.15 E-value=0.061 Score=50.02 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=28.0
Q ss_pred ccCcceEEEeeccccccccchhhccCcEE
Q psy5259 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRV 149 (294)
Q Consensus 121 ~~~Lk~i~~~~~G~d~id~~~~~~~GI~v 149 (294)
+++||+|+..++|+|++|++.++++||.|
T Consensus 56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v 84 (380)
T 2o4c_A 56 GSPVRFVGTCTIGTDHLDLDYFAEAGIAW 84 (380)
T ss_dssp TSCCCEEEECSSCSTTBCHHHHHHHTCEE
T ss_pred CCCceEEEEcCcccchhhHHHHHhCCCEE
Confidence 59999999999999999999999999998
No 89
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=91.91 E-value=0.063 Score=48.39 Aligned_cols=53 Identities=6% Similarity=-0.066 Sum_probs=37.4
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccc-c---c----------cCcCCCHHHHHHHHHcCCceE
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRK-Q---F----------RGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~-~---~----------RG~lvde~aL~~aL~~g~i~g 271 (294)
.++++++++||+|++++|..+..+..+..+ . + .+.....+.+.+.+++..+..
T Consensus 79 ~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~ 145 (320)
T 4dll_A 79 EQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH 145 (320)
T ss_dssp SSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence 479999999999999999766666665421 1 1 444445677888888766553
No 90
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=91.46 E-value=0.13 Score=46.03 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=39.0
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCce
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ 270 (294)
.++++++++||+|++++|....++.+++++.+ .....+.+.+.+.+++..+.
T Consensus 57 ~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~ 121 (306)
T 3l6d_A 57 ESVKAALSASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH 121 (306)
T ss_dssp SSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 47999999999999999977767777753233 55555677888888776554
No 91
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=91.34 E-value=0.11 Score=44.95 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=17.2
Q ss_pred CHHHHhccCCEEEEecCCCc
Q psy5259 220 PLDTLCAQSDFIFVTCALTK 239 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~ 239 (294)
++++++++||+|++++|...
T Consensus 83 ~~~e~~~~aDvVilavp~~~ 102 (245)
T 3dtt_A 83 AFADVAAGAELVVNATEGAS 102 (245)
T ss_dssp EHHHHHHHCSEEEECSCGGG
T ss_pred CHHHHHhcCCEEEEccCcHH
Confidence 57788999999999999654
No 92
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=90.97 E-value=2.3 Score=33.19 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=35.8
Q ss_pred CCCCeEEEecCCCCCCchhHH----Hhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCCC
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYD----ILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNPH 59 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~----~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~~ 59 (294)
|++++|++..+.-...+.... .|+. +|+++.... ..+.|++.+.+. ++|++..+..
T Consensus 1 ~~~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~---~~p~e~~v~~a~~~~~d~v~lS~~ 63 (137)
T 1ccw_A 1 MEKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGV---LSPQELFIKAAIETKADAILVSSL 63 (137)
T ss_dssp CCCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEE---EECHHHHHHHHHHHTCSEEEEEEC
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHhcCCCEEEEEec
Confidence 788998886542222232222 2333 799997655 468899887764 6888887643
No 93
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=90.82 E-value=0.14 Score=44.89 Aligned_cols=152 Identities=23% Similarity=0.196 Sum_probs=84.5
Q ss_pred CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC--CCHH---HHHHHccCCcEEEeCCCCCCC--HHHHhhcCC
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR--MPRD---IFIEKLKGCSALLCNPHQKVD--KEALDESGE 72 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~--~~~e---~~~~~l~~~d~~~~~~~~~~~--~~~l~~~~~ 72 (294)
|..++||+|.| -+...+..+.|++ +++++.++..... .+.+ +.++.+.++|.++..+..-+. -+.+...++
T Consensus 12 ~~g~~IlvTRp-~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~~ 90 (269)
T 3re1_A 12 MSAWRLLLTRP-AEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVWP 90 (269)
T ss_dssp -CCCEEEECSC-HHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHCS
T ss_pred cCCCEEEEeCC-hHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCC
Confidence 56789999996 4423455666766 7888877653211 1222 334456788998876533222 133333333
Q ss_pred CceEEEeccccCcccChhhHhhCCcEEeecCC-CChhhhhhhhHHHH--HHccCcceEEEeeccccccccchhhccCcEE
Q psy5259 73 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGP-VSSDAVAEFNIGLA--IAVKNLKVISTFSVGHDHLHLDQIKSRGIRV 149 (294)
Q Consensus 73 ~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~-~~~~~vae~~~~~~--l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v 149 (294)
.++-+..+.+|- --.+.+++.|+.+-..|. ++++.++++.. +. ...+.-+++...+.+....-.+.++++|+.|
T Consensus 91 ~~~~~~i~aVG~--~Ta~aL~~~G~~~~~~~~~~~~e~L~~~l~-l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v 167 (269)
T 3re1_A 91 QPPMQPWFSVGS--ATGQILLDYGLDASWPEQGDDSEALLDHPR-LKQAIAVPGSRVLIMRGNEGRELLAEQLRERGVGV 167 (269)
T ss_dssp SCCCSCEEESSH--HHHHHHHHTTCCEECC-------CGGGCHH-HHHHHCSSSCEEEEEECSSCCCHHHHHHHHTTCEE
T ss_pred CcccCEEEEECH--HHHHHHHHcCCCcccCCCCCCHHHHHHhhh-hcccccCCCCEEEEEccCccHHHHHHHHHHCCCEE
Confidence 332122222231 123568899999877755 58888888653 11 1345667777777665555567788899888
Q ss_pred EeeCCCc
Q psy5259 150 GTVGPVS 156 (294)
Q Consensus 150 ~~~~~~~ 156 (294)
...+-|.
T Consensus 168 ~~~~vY~ 174 (269)
T 3re1_A 168 DYLPLYR 174 (269)
T ss_dssp EEEECEE
T ss_pred EEEeEEE
Confidence 7766543
No 94
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=90.57 E-value=0.11 Score=46.69 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.2
Q ss_pred HHHHHccCcceEEEeecccccccc
Q psy5259 116 GLAIAVKNLKVISTFSVGHDHLHL 139 (294)
Q Consensus 116 ~~~l~~~~Lk~i~~~~~G~d~id~ 139 (294)
..+..+++||+|++.++|+|++|+
T Consensus 43 ~~l~~~~~Lk~I~~~~~G~d~id~ 66 (303)
T 1qp8_A 43 EELAKMPRLKFIQVVTAGLDHLPW 66 (303)
T ss_dssp HHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred HHHhhCCCCcEEEECCcCcccccH
Confidence 334467999999999999999975
No 95
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=90.51 E-value=0.13 Score=46.10 Aligned_cols=52 Identities=4% Similarity=-0.114 Sum_probs=34.1
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccc--ccc---c----------cCcCCCHHHHHHHHHcCCce
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIG--RKQ---F----------RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~--~~~---~----------RG~lvde~aL~~aL~~g~i~ 270 (294)
.++++++++||+|++++|....++..+- .+. + ....-..+.+.+.+.+..+.
T Consensus 69 ~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~ 135 (310)
T 3doj_A 69 ESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR 135 (310)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 4799999999999999997666666551 111 1 22223456677777766544
No 96
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*
Probab=89.15 E-value=0.17 Score=48.59 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=27.1
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccccCcCCCHHHHHHHHHcCCce
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~RG~lvde~aL~~aL~~g~i~ 270 (294)
.++.+++++||+|++++|..... .++ + .+...|+.|.+.
T Consensus 113 ~s~aEAa~~ADVVILaVP~~~~~-eVl----------~--eI~p~LK~GaIL 151 (525)
T 3fr7_A 113 GDIWETVSGSDLVLLLISDAAQA-DNY----------E--KIFSHMKPNSIL 151 (525)
T ss_dssp EEHHHHHHHCSEEEECSCHHHHH-HHH----------H--HHHHHSCTTCEE
T ss_pred CCHHHHHhcCCEEEECCChHHHH-HHH----------H--HHHHhcCCCCeE
Confidence 36789999999999999965443 232 2 356666777663
No 97
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=87.70 E-value=0.2 Score=45.52 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=33.7
Q ss_pred cCcCCCEEEEEcc---------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccc
Q psy5259 200 IGLNGSTVGIVGT---------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 200 ~~l~gktvgIiG~---------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~ 246 (294)
..+.+++|||||+ ..+....++++++++||+|++++|... ...++.
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~-~~~v~~ 90 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEF-QGRLYK 90 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence 5678899999999 122223377889999999999999553 355555
No 98
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=87.14 E-value=0.57 Score=41.54 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=33.0
Q ss_pred hhhhhHhcCCCCccccccccccccCcCCCEEEEEc-c------------cCCCc--------ccCHHHHhccCCEEEEec
Q psy5259 177 QGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVG-T------------ELGAQ--------LVPLDTLCAQSDFIFVTC 235 (294)
Q Consensus 177 ~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG-~------------~~~~~--------~~~l~ell~~sDvV~l~~ 235 (294)
++..+.++..|... ....++||||| + ..+.+ ..++++.+++||+|++++
T Consensus 4 ~~~~~~~~~~~~~~----------~~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVilav 73 (298)
T 2pv7_A 4 ESYANENQFGFKTI----------NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSV 73 (298)
T ss_dssp ---------CCCCS----------CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECS
T ss_pred hHHhhhhccCcccc----------CCCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEEeC
Confidence 34445556678531 12357899999 7 22211 125788999999999999
Q ss_pred CCCcccccccc
Q psy5259 236 ALTKDTEQLIG 246 (294)
Q Consensus 236 p~t~~T~~li~ 246 (294)
|... +..++.
T Consensus 74 p~~~-~~~vl~ 83 (298)
T 2pv7_A 74 PINL-TLETIE 83 (298)
T ss_dssp CGGG-HHHHHH
T ss_pred CHHH-HHHHHH
Confidence 9654 555543
No 99
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*
Probab=87.02 E-value=0.42 Score=45.26 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=32.1
Q ss_pred cCcCCCEEEEEcc--------------------------------------cCCCcccCHHHHhccCCEEEEecCC
Q psy5259 200 IGLNGSTVGIVGT--------------------------------------ELGAQLVPLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 200 ~~l~gktvgIiG~--------------------------------------~~~~~~~~l~ell~~sDvV~l~~p~ 237 (294)
.-|+||||+|||| +.|.+..+..|..+.||+|.+.+|-
T Consensus 33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD 108 (491)
T 3ulk_A 33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPD 108 (491)
T ss_dssp GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCG
T ss_pred HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCCh
Confidence 5689999999999 2345566899999999999999993
No 100
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=86.83 E-value=0.58 Score=41.05 Aligned_cols=31 Identities=6% Similarity=0.135 Sum_probs=22.0
Q ss_pred CHHHHhccCCEEEEecCCCc--ccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTK--DTEQLIGRKQF 250 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~--~T~~li~~~~~ 250 (294)
+++++++++|+|++++|... ++...++.+.+
T Consensus 179 ~~~~~~~~aDiVi~atp~~~~~~~~~~i~~~~l 211 (275)
T 2hk9_A 179 SPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLI 211 (275)
T ss_dssp CGGGTGGGCSEEEECSSTTSSTTCCCSSCGGGC
T ss_pred hHHhhhcCCCEEEEeCCCCCCCCCCCCCCHHHc
Confidence 67888999999999999764 23334543334
No 101
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=86.10 E-value=0.33 Score=43.12 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=74.7
Q ss_pred HccCcceEEEeeccccccc-cchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccc
Q psy5259 120 AVKNLKVISTFSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISD 198 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~id-~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~ 198 (294)
.++++|+|. +|+|++| ++++.++||.|+|+++.+ ++ ++.|++..+ .|.|.... ...+
T Consensus 95 ~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~~~~--~~~~- 152 (300)
T 2rir_A 95 RTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIMLAI--QHTD- 152 (300)
T ss_dssp TSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHHHHH--HTCS-
T ss_pred hcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHHHHH--HhcC-
Confidence 568999988 8999999 899999999999999874 33 223444333 34453210 1234
Q ss_pred ccCcCCCEEEEEcc--------------------------------cCCCc---ccCHHHHhccCCEEEEecCCCccccc
Q psy5259 199 IIGLNGSTVGIVGT--------------------------------ELGAQ---LVPLDTLCAQSDFIFVTCALTKDTEQ 243 (294)
Q Consensus 199 ~~~l~gktvgIiG~--------------------------------~~~~~---~~~l~ell~~sDvV~l~~p~t~~T~~ 243 (294)
.+++|+|+||||+ +.+.+ ..++++++++||+|++|+|+ +
T Consensus 153 -~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~ 226 (300)
T 2rir_A 153 -YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----M 226 (300)
T ss_dssp -SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----C
T ss_pred -CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----h
Confidence 7899999999999 12222 25789999999999999996 6
Q ss_pred ccccccc
Q psy5259 244 LIGRKQF 250 (294)
Q Consensus 244 li~~~~~ 250 (294)
+++++.|
T Consensus 227 ~i~~~~~ 233 (300)
T 2rir_A 227 ILNQTVL 233 (300)
T ss_dssp CBCHHHH
T ss_pred hhCHHHH
Confidence 7766554
No 102
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=84.68 E-value=0.3 Score=43.55 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=23.8
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRK 248 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~ 248 (294)
.++.|+.++||+|++++|-.+..+..+..+
T Consensus 53 ~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~ 82 (297)
T 4gbj_A 53 ENAIDAITPGGIVFSVLADDAAVEELFSME 82 (297)
T ss_dssp SSGGGGCCTTCEEEECCSSHHHHHHHSCHH
T ss_pred CCHHHHHhcCCceeeeccchhhHHHHHHHH
Confidence 479999999999999999776666655443
No 103
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=84.32 E-value=0.63 Score=42.69 Aligned_cols=60 Identities=10% Similarity=0.211 Sum_probs=40.0
Q ss_pred cCHHHHhccC---CEEEEecCCCccccccccc-------ccc-----cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259 219 VPLDTLCAQS---DFIFVTCALTKDTEQLIGR-------KQF-----RGGLLDQEALVEFLRDKKIGGAGLDVMIP 279 (294)
Q Consensus 219 ~~l~ell~~s---DvV~l~~p~t~~T~~li~~-------~~~-----RG~lvde~aL~~aL~~g~i~ga~LDV~~~ 279 (294)
.+++++++.+ |+|++++|.. .++.++.. ..+ .+...+...+.+.+.+..+......|.-.
T Consensus 70 ~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg 144 (358)
T 4e21_A 70 RSIEEFCAKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG 144 (358)
T ss_dssp SSHHHHHHHSCSSCEEEECSCGG-GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred CCHHHHHhcCCCCCEEEEeCCHH-HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 4799999999 9999999976 66655521 111 33333567788888887776554445443
No 104
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=83.72 E-value=0.79 Score=40.90 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=27.7
Q ss_pred hhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------cC---------------------CCcc-cCHH
Q psy5259 179 HNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------EL---------------------GAQL-VPLD 222 (294)
Q Consensus 179 ~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------~~---------------------~~~~-~~l~ 222 (294)
++.++.+.|.++++... +....-++|||||+ .+ +... .+++
T Consensus 2 ~~~~~~~~~~~~~~~~~---~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~ 78 (312)
T 3qsg_A 2 HHHHHHSSGVDLGTENL---YFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVA 78 (312)
T ss_dssp --------------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHH
T ss_pred CcccccccccccCcccc---cccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHH
Confidence 34566777765443211 13445679999999 11 1111 3688
Q ss_pred HHhccCCEEEEecCCCccc
Q psy5259 223 TLCAQSDFIFVTCALTKDT 241 (294)
Q Consensus 223 ell~~sDvV~l~~p~t~~T 241 (294)
+++++||+|++++|.....
T Consensus 79 e~~~~aDvVi~~vp~~~~~ 97 (312)
T 3qsg_A 79 EVAGECDVIFSLVTAQAAL 97 (312)
T ss_dssp HHHHHCSEEEECSCTTTHH
T ss_pred HHHhcCCEEEEecCchhHH
Confidence 9999999999999976643
No 105
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=83.14 E-value=0.3 Score=44.10 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=31.2
Q ss_pred HccCcceEEEeecccccc-c-cchhhccCcEEEeeCCCchH--HHHHHHHHHHHHHh
Q psy5259 120 AVKNLKVISTFSVGHDHL-H-LDQIKSRGIRVGTVGPVSSD--AVAEFNIGLAIAVS 172 (294)
Q Consensus 120 ~~~~Lk~i~~~~~G~d~i-d-~~~~~~~GI~v~~~~~~~~~--~VAE~al~l~l~~~ 172 (294)
. ++||+|+..++|+|++ | +++ +.+..-..++-.+.. ..++-+.=+.+++.
T Consensus 57 ~-~~Lk~I~~~~aG~d~i~d~~~a--~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~ 110 (315)
T 3pp8_A 57 G-RRLKAVFVLGAGVDAILSKLNA--HPEMLDASIPLFRLEDTGMGLQMQEYAVSQV 110 (315)
T ss_dssp T-CCCSEEEESSSCCHHHHHHHHH--CTTSSCTTSCEEEC--CCCHHHHHHHHHHHH
T ss_pred C-CCceEEEECCEecccccchhhh--hhhhhcCCCEEEEcCCCCccHHHHHHHHHHH
Confidence 5 9999999999999999 7 877 333333222323332 23555555666554
No 106
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=82.92 E-value=0.53 Score=42.05 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=23.8
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~ 246 (294)
.+..|+.+.||+|++++|-.+..+..+.
T Consensus 51 ~s~~e~~~~~dvv~~~l~~~~~v~~V~~ 78 (300)
T 3obb_A 51 RSARDAVQGADVVISMLPASQHVEGLYL 78 (300)
T ss_dssp SSHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred CCHHHHHhcCCceeecCCchHHHHHHHh
Confidence 4799999999999999998887766654
No 107
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=82.63 E-value=0.86 Score=42.24 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=22.3
Q ss_pred CHHHHhccCCEEEEec--CCCcccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTC--ALTKDTEQLIGRKQF 250 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~--p~t~~T~~li~~~~~ 250 (294)
++++.+++||+|+.+. |. ..+.++|+++.+
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv 289 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPG-RPAPRLVTAAAA 289 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHH
T ss_pred HHHHHHhcCCEEEECCCCCC-cccceeecHHHH
Confidence 4778999999999775 53 346678777666
No 108
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=82.46 E-value=0.65 Score=40.01 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=86.5
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC-C-C---HHHHHHHccCCcEEEeCCCCCCC--HHHHhhcCCCc
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR-M-P---RDIFIEKLKGCSALLCNPHQKVD--KEALDESGENL 74 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~-~-~---~e~~~~~l~~~d~~~~~~~~~~~--~~~l~~~~~~l 74 (294)
-++||+|.| -+..++..+.|++ +++++.++..... . + -++.+..+.++|.++..+..-+. -+.+...++.+
T Consensus 6 g~~vlvtRp-~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~~ 84 (254)
T 4es6_A 6 GWRLLLTRP-DEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQP 84 (254)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSSC
T ss_pred CCEEEEeCC-hHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCc
Confidence 468999986 3322345566666 6788776543211 1 1 12334566789998876533222 12233323333
Q ss_pred eEEEeccccCcccChhhHhhCCcEEeecC-CCChhhhhhhhHHHH-HHccCcceEEEeeccccccccchhhccCcEEEee
Q psy5259 75 KVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIGLA-IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTV 152 (294)
Q Consensus 75 k~i~~~~~G~d~id~~~~~~~gI~v~~~~-~~~~~~vae~~~~~~-l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~ 152 (294)
+-+..+.+|- --.+.+++.|+.+-..| +.+++.++++....- ...++-+++...+.+....-.+.++++|+.|...
T Consensus 85 ~~~~i~aVG~--~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~ 162 (254)
T 4es6_A 85 PQQTWCSVGA--ATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYL 162 (254)
T ss_dssp CSCEEEESSH--HHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEE
T ss_pred ccCEEEEECH--HHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEE
Confidence 2122223331 12356788899988876 478888888654100 1346667777777666655567788899888766
Q ss_pred CCC
Q psy5259 153 GPV 155 (294)
Q Consensus 153 ~~~ 155 (294)
+-|
T Consensus 163 ~vY 165 (254)
T 4es6_A 163 PLY 165 (254)
T ss_dssp ECE
T ss_pred eEE
Confidence 654
No 109
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=82.39 E-value=1.3 Score=42.29 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=57.4
Q ss_pred eeccccccc-cchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEE
Q psy5259 130 FSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVG 208 (294)
Q Consensus 130 ~~~G~d~id-~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvg 208 (294)
.++|+..+. ........+++.|+.+....+.-+...+.--.+. .+-| + ..+ ..+.||+++
T Consensus 209 TttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~-----------dgi~-r-----~tg--~~L~GKtVv 269 (488)
T 3ond_A 209 TTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLP-----------DGLM-R-----ATD--VMIAGKVAV 269 (488)
T ss_dssp SHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHH-----------HHHH-H-----HHC--CCCTTCEEE
T ss_pred ccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHH-----------HHHH-H-----HcC--CcccCCEEE
Confidence 355555431 2233456799999988655553333322211111 1111 0 122 578999999
Q ss_pred EEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 209 IVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 209 IiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
|+|+ ..+....+++++++.+|+|+.+. .+.++|+.+.|
T Consensus 270 VtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~~e~l 339 (488)
T 3ond_A 270 VAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIMLDHM 339 (488)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBCHHHH
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhhHHHH
Confidence 9999 12334567899999999999643 45677776555
No 110
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=81.89 E-value=1.6 Score=38.83 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=36.5
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+++||++.|+|. ..++ +..+|++.+++||+|+.+.+. -++|.++.+
T Consensus 156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg~----p~~I~~~~v 222 (285)
T 3p2o_A 156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGC----VNLLRSDMV 222 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECSSC----TTCBCGGGS
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECCCC----CCcCCHHHc
Confidence 6789999999997 1222 234799999999999999983 356777776
No 111
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=81.39 E-value=1.2 Score=34.54 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=22.0
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+++++++++|+|+.+.|.. ..++..+.|
T Consensus 72 ~~~~~~~~~~Divi~at~~~---~~~~~~~~l 100 (144)
T 3oj0_A 72 NDIDSLIKNNDVIITATSSK---TPIVEERSL 100 (144)
T ss_dssp SCHHHHHHTCSEEEECSCCS---SCSBCGGGC
T ss_pred cCHHHHhcCCCEEEEeCCCC---CcEeeHHHc
Confidence 47889999999999999855 345555544
No 112
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=81.32 E-value=2.7 Score=35.61 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=84.9
Q ss_pred CeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC--CCHHHHHHHccCCcEEEeCCCCCCCH--HHHhhcCCCceEEE
Q psy5259 4 PKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR--MPRDIFIEKLKGCSALLCNPHQKVDK--EALDESGENLKVIS 78 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~--~~~e~~~~~l~~~d~~~~~~~~~~~~--~~l~~~~~~lk~i~ 78 (294)
++||+|.| -+..++..+.|++ +++++.++..... ...++..+.+.++|.++..+..-+.. +.+...-+++++++
T Consensus 2 ~~vlvtRp-~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~aV~~~~~~l~~~l~~~~~~a 80 (240)
T 3mw8_A 2 MKLLLTRP-EGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYA 80 (240)
T ss_dssp CCEEECSC-TTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEE
T ss_pred CEEEEeCC-hHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHHHHHHHHHHHhhCcCCeEEE
Confidence 57999997 4444577777777 7788766543210 12245566788899988765322221 12221114444443
Q ss_pred eccccCcccChhhHhhCCcEEeecCC-C-ChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCC
Q psy5259 79 TFSVGHDHLHLDQIKSRGIRVGTVGP-V-SSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGP 154 (294)
Q Consensus 79 ~~~~G~d~id~~~~~~~gI~v~~~~~-~-~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~ 154 (294)
+|- --.+.+++.|+..-..|. . +++.++++... ...+.-+++...|.+....-.+.++++|+.|...+-
T Consensus 81 ---VG~--~Ta~~L~~~G~~~~~~p~~~~~~e~L~~~~~~--~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~ 151 (240)
T 3mw8_A 81 ---VGD--ATADALALQGITAERSPADSQATEGLLTLPSL--EQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEV 151 (240)
T ss_dssp ---SSH--HHHHHHHHTTCCCEECC---CCGGGGGGCGGG--TCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEE
T ss_pred ---ECH--HHHHHHHHcCCCCccCCCCcCCHHHHHHhhhh--ccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 221 123578899998766664 3 88888885321 123556777777766655556778889988776554
No 113
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=81.07 E-value=1.8 Score=38.49 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=36.1
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|+|. ..++ +..+|++.+++||+|+.+.|. -++|.++.+
T Consensus 157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg~----p~~I~~~~v 223 (286)
T 4a5o_A 157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGK----PGLVKGEWI 223 (286)
T ss_dssp CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEECCCC----TTCBCGGGS
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEECCCC----CCCCCHHHc
Confidence 6789999999997 1222 234799999999999999983 356777766
No 114
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=80.82 E-value=0.46 Score=42.03 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=33.7
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccc-------cccc-----cCcCCCHHHHHHHHHcCCceE
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIG-------RKQF-----RGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~-------~~~~-----RG~lvde~aL~~aL~~g~i~g 271 (294)
.+++++++ ||+|++++|..+.++..+. ...+ .......+.+.+.+.+..+..
T Consensus 63 ~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~ 126 (296)
T 3qha_A 63 DSVADVAA-ADLIHITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHI 126 (296)
T ss_dssp SSHHHHTT-SSEEEECCSSHHHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEE
T ss_pred CCHHHHHh-CCEEEEECCChHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEE
Confidence 37899999 9999999997666655441 1111 333334567777777665543
No 115
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=80.81 E-value=1.9 Score=38.28 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=36.3
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|||. ..++ +..+|++.+++||+|+.+.+. -++|.++.+
T Consensus 157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~----p~~I~~~~v 223 (285)
T 3l07_A 157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGK----PNFITADMV 223 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCC----TTCBCGGGS
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEECCCC----CCCCCHHHc
Confidence 6789999999997 1222 234799999999999999983 356777776
No 116
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=80.75 E-value=0.53 Score=41.29 Aligned_cols=52 Identities=10% Similarity=-0.007 Sum_probs=34.7
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccc--cc---cc----------cCcCCCHHHHHHHHHcCCce
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIG--RK---QF----------RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~--~~---~~----------RG~lvde~aL~~aL~~g~i~ 270 (294)
.++++++++||+|++++|..+.++..+. .+ .+ .+.....+.+.+.+.+..+.
T Consensus 49 ~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~ 115 (287)
T 3pdu_A 49 SSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR 115 (287)
T ss_dssp SCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 4799999999999999997666666551 11 11 33333456777777775544
No 117
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=79.82 E-value=2.2 Score=38.14 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=36.6
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+++||++.|||. ..++ ...+|.+.+++||+|+.+.+. -++|.++.+
T Consensus 161 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~----p~~I~~~~v 227 (301)
T 1a4i_A 161 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQ----PEMVKGEWI 227 (301)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCC----TTCBCGGGS
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhccCCEEEECCCC----cccCCHHHc
Confidence 6789999999999 1122 234799999999999999985 246777777
No 118
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=79.76 E-value=1.9 Score=38.28 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=36.3
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+++||++.|||. ..++ +..+|.+.+++||+|+.+.+.. ++|.++.+
T Consensus 155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p----~lI~~~~v 221 (288)
T 1b0a_A 155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKP----GFIPGDWI 221 (288)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECSCCT----TCBCTTTS
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHhccCCEEEECCCCc----CcCCHHHc
Confidence 6789999999999 2222 2347999999999999999922 36777777
No 119
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=79.09 E-value=0.72 Score=40.84 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=33.7
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccc--ccc---c----------cCcCCCHHHHHHHHHcCCce
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIG--RKQ---F----------RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~--~~~---~----------RG~lvde~aL~~aL~~g~i~ 270 (294)
.++++++++||+|++++|..+..+..+. ++. + .......+.+.+.+.+..+.
T Consensus 56 ~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~ 122 (303)
T 3g0o_A 56 ASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN 122 (303)
T ss_dssp SSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred CCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence 5788999999999999997666665542 111 1 22223345677777765443
No 120
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=78.57 E-value=2.1 Score=39.34 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=67.9
Q ss_pred cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcC-CCceEEEeccccCcccChhhHhhCCcEEeecCC
Q psy5259 26 MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESG-ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGP 104 (294)
Q Consensus 26 ~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~-~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~ 104 (294)
..|++.. .. ....+++....++ +.+++......++++++.+. .++++|+..++..+. +|.|.
T Consensus 67 ~adii~~-vk--~p~~~e~~~l~~~-~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~-------------~~~p~ 129 (377)
T 2vhw_A 67 DADLLLK-VK--EPIAAEYGRLRHG-QILFTFLHLAASRACTDALLDSGTTSIAYETVQTAD-------------GALPL 129 (377)
T ss_dssp HCSEEEC-SS--CCCGGGGGGCCTT-CEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTT-------------SCCTT
T ss_pred cCCEEEE-eC--CCChHHHhhcCCC-CEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccC-------------CCccc
Confidence 3566542 32 2455666655556 88888877789999998872 468888765554431 67888
Q ss_pred CChhhhhhhhH--HHHHHccCcceEEEeeccccccccchhhccCcEEEeeC-CCchHHHHHHHHHH
Q psy5259 105 VSSDAVAEFNI--GLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIGL 167 (294)
Q Consensus 105 ~~~~~vae~~~--~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~-~~~~~~VAE~al~l 167 (294)
+++.+ |++. ++++.++++..... +.|+-.-.+. .-.|.+|...+ |..+..+|..+.++
T Consensus 130 ~s~~a--e~ag~~a~~~a~r~l~~~~~-g~~~~~~~~~--~l~g~~V~ViG~G~iG~~~a~~a~~~ 190 (377)
T 2vhw_A 130 LAPMS--EVAGRLAAQVGAYHLMRTQG-GRGVLMGGVP--GVEPADVVVIGAGTAGYNAARIANGM 190 (377)
T ss_dssp THHHH--HHHHHHHHHHHHHHTSGGGT-SCCCCTTCBT--TBCCCEEEEECCSHHHHHHHHHHHHT
T ss_pred cCchH--HHHHHHHHHHHHHHHHHhcC-CCcccccCCC--CCCCCEEEEECCCHHHHHHHHHHHhC
Confidence 87666 7776 44444455422110 1111100111 22354555444 66777777766653
No 121
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=77.53 E-value=0.91 Score=39.72 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=34.5
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccc-cccc--------------cCcCCCHHHHHHHHHcCCce
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIG-RKQF--------------RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~-~~~~--------------RG~lvde~aL~~aL~~g~i~ 270 (294)
.++++++++||+|++++|....++..+. .+.+ ....-+.+.+.+.+++..+.
T Consensus 49 ~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~ 115 (287)
T 3pef_A 49 ATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR 115 (287)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence 4799999999999999997666666551 1111 33333456677777776554
No 122
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=77.52 E-value=2.4 Score=37.49 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=34.2
Q ss_pred cCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 202 LNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 202 l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
++||++.|+|. ..++ +..+|++.+++||+|+.+.+. -++|.++.+
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~~~ADIVI~Avg~----p~~I~~~~v 212 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGR----PGFLNREMV 212 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHHSSEEEECSSC----TTCBCGGGC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhhccCCEEEECCCC----CccccHhhc
Confidence 78899999997 1122 234799999999999999984 346777776
No 123
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}
Probab=78.43 E-value=0.51 Score=39.51 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=21.0
Q ss_pred cCHHHHhccCCEEEEecCCCccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
.++++++++||+|++++|.. .++.++
T Consensus 65 ~~~~~~~~~aDvVilav~~~-~~~~v~ 90 (201)
T 2yjz_A 65 LCYSEAASRSDVIVLAVHRE-HYDFLA 90 (201)
Confidence 36778899999999999964 576665
No 124
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=75.80 E-value=2.5 Score=37.83 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=35.4
Q ss_pred cCcCCCEEEEEcc-------------cCCCc-------ccCHH--HHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGAQ-------LVPLD--TLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~~-------~~~l~--ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|||. ..+++ ..+|+ +.+++||+|+.+.|. -++|.++.+
T Consensus 161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~Avg~----p~~I~~~~v 229 (300)
T 4a26_A 161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQ----PGYVKGEWI 229 (300)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHHTCSEEEECSCC----TTCBCGGGS
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhccCCEEEECCCC----CCCCcHHhc
Confidence 6789999999997 12222 22477 999999999999994 346777666
No 125
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=74.85 E-value=1.3 Score=38.98 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=35.0
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccc--c---cc----------cCcCCCHHHHHHHHHcCCce
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR--K---QF----------RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~--~---~~----------RG~lvde~aL~~aL~~g~i~ 270 (294)
.++++++++||+|++++|-...++..+.. + .+ .+.....+.+.+.+.+..+.
T Consensus 51 ~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~~~~~l~~~~~vi~~st~~~~~~~~l~~~~~~~g~~ 117 (302)
T 2h78_A 51 RSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA 117 (302)
T ss_dssp SSHHHHHTTCSEEEECCSCHHHHHHHHHSSSCGGGSSCSSCEEEECSCCCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHhCCCeEEEECCCHHHHHHHHcCchhHHhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 47899999999999999977666666541 1 11 33333346788888765443
No 126
>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Probab=74.23 E-value=3.7 Score=36.55 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=21.9
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++++++++||+|++++|. ++.++..+.+
T Consensus 188 ~~~~e~v~~aDiVi~atp~---~~~v~~~~~l 216 (312)
T 2i99_A 188 SSVQEAVAGADVIITVTLA---TEPILFGEWV 216 (312)
T ss_dssp SSHHHHHTTCSEEEECCCC---SSCCBCGGGS
T ss_pred CCHHHHHhcCCEEEEEeCC---CCcccCHHHc
Confidence 4789999999999999984 4555554444
No 127
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=72.81 E-value=4.7 Score=35.67 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=35.9
Q ss_pred cCcCCCEEEEEcc-------------cC--CCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------EL--GAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~--~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+++||++.|||. .. +.+ ..+|.+.+++||+|+.+.+-. ++|.++.+
T Consensus 154 i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~~~~~~ADIVI~Avg~p----~~I~~~~v 222 (281)
T 2c2x_A 154 ISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVA----HLLTADMV 222 (281)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHHHHHTTCSEEEECSCCT----TCBCGGGS
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHHHHHhhCCEEEECCCCC----cccCHHHc
Confidence 5788999999997 23 332 247999999999999999832 36777777
No 128
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=70.94 E-value=3.1 Score=34.71 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=20.1
Q ss_pred cCHHHHhccCCEEEEecCCCccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
.+++++++++|+|++++|. ...+.++
T Consensus 75 ~~~~~~~~~~DvVi~av~~-~~~~~v~ 100 (215)
T 2vns_A 75 TFQEEAVSSPEVIFVAVFR-EHYSSLC 100 (215)
T ss_dssp EEHHHHTTSCSEEEECSCG-GGSGGGG
T ss_pred ecHHHHHhCCCEEEECCCh-HHHHHHH
Confidence 3678889999999999994 4455554
No 129
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=69.67 E-value=3.1 Score=38.75 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=22.1
Q ss_pred CHHHHhccCCEEEEec--CCCcccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTC--ALTKDTEQLIGRKQF 250 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~--p~t~~T~~li~~~~~ 250 (294)
++++.+++||+|+.+. |.. .+-.+|+++.+
T Consensus 268 ~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv 299 (405)
T 4dio_A 268 LVAEHIAKQDIVITTALIPGR-PAPRLVTREML 299 (405)
T ss_dssp HHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHH
T ss_pred HHHHHhcCCCEEEECCcCCCC-CCCEEecHHHH
Confidence 5788899999998764 532 46677777666
No 130
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=69.53 E-value=3.5 Score=36.74 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=17.4
Q ss_pred cCHHH-HhccCCEEEEecCCCc
Q psy5259 219 VPLDT-LCAQSDFIFVTCALTK 239 (294)
Q Consensus 219 ~~l~e-ll~~sDvV~l~~p~t~ 239 (294)
.++++ ++++||+|++++|...
T Consensus 85 ~~~~~~~~~~aDvVilavp~~~ 106 (314)
T 3ggo_A 85 TSIAKVEDFSPDFVMLSSPVRT 106 (314)
T ss_dssp SCTTGGGGGCCSEEEECSCGGG
T ss_pred CCHHHHhhccCCEEEEeCCHHH
Confidence 35778 8999999999999653
No 131
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=68.82 E-value=5.9 Score=35.39 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=36.5
Q ss_pred cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.++.||++.|||- ..++ +..+|.+..++||+|+.++.- -+||.++.+
T Consensus 175 i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~dl~~~~~~ADIvV~A~G~----p~~i~~d~v 241 (303)
T 4b4u_A 175 IEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELVKQADIIVGAVGK----AELIQKDWI 241 (303)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHHTCSEEEECSCS----TTCBCGGGS
T ss_pred CCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCCCHHHHhhcCCeEEeccCC----CCccccccc
Confidence 6899999999998 1122 234799999999999998763 267888877
No 132
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=68.72 E-value=1.8 Score=37.75 Aligned_cols=28 Identities=7% Similarity=0.059 Sum_probs=22.7
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIG 246 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~ 246 (294)
.+++++++++|+|++++|-...++.++.
T Consensus 48 ~~~~~~~~~~Dvvi~~vp~~~~~~~v~~ 75 (296)
T 2gf2_A 48 SSPADVAEKADRIITMLPTSINAIEAYS 75 (296)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHhcCCEEEEeCCCHHHHHHHHh
Confidence 4788999999999999997766666554
No 133
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=66.47 E-value=3.6 Score=35.80 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=34.5
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccc-cc----c----------cCcCCCHHHHHHHHHcCCc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR-KQ----F----------RGGLLDQEALVEFLRDKKI 269 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~-~~----~----------RG~lvde~aL~~aL~~g~i 269 (294)
.+++++++++|+|++++|....++.++.. +. + .|...+.+.|.+.+.+..+
T Consensus 53 ~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~ 118 (299)
T 1vpd_A 53 STAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGV 118 (299)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 46889999999999999976666655522 11 1 4433345788888876433
No 134
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=66.30 E-value=50 Score=29.65 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=13.8
Q ss_pred CHHHHhccCCEEEEecCC
Q psy5259 220 PLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~ 237 (294)
++.+.++.+|+|+.+.+.
T Consensus 223 ~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 223 EIETAVAEADLLIGAVLV 240 (361)
T ss_dssp HHHHHHHTCSEEEECCCC
T ss_pred HHHHHHcCCCEEEECCCc
Confidence 355667789999988864
No 135
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=66.16 E-value=4.2 Score=36.23 Aligned_cols=61 Identities=10% Similarity=-0.106 Sum_probs=35.7
Q ss_pred CHHHHhccCCEEEEecCCCcccccc------cccccc-----cCcCCCHHHHHHHHHcCCceEEEeeCCCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQL------IGRKQF-----RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~l------i~~~~~-----RG~lvde~aL~~aL~~g~i~ga~LDV~~~E 280 (294)
++++++++||+|++++|.....+.+ +....+ .......+.+.+.+++..+....--|.-++
T Consensus 80 s~~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~ 151 (317)
T 4ezb_A 80 DDVAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV 151 (317)
T ss_dssp SSGGGGGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS
T ss_pred CHHHHHhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc
Confidence 6788899999999999976544332 111111 223334667777887765443222244433
No 136
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=63.08 E-value=5 Score=34.98 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCeEEEecCCCCCC---chhHHHhhc-cceEEEcCCCCC-CCCHHHHHHHc---cCCcEEEeCCCCCCC--HHHHhhcC-
Q psy5259 3 KPKLLLTRNDYPRV---SPAYDILED-MFDIITYPISEG-RMPRDIFIEKL---KGCSALLCNPHQKVD--KEALDESG- 71 (294)
Q Consensus 3 k~kvl~~~~~~~~~---~~~~~~l~~-~~~v~~~~~~~~-~~~~e~~~~~l---~~~d~~~~~~~~~~~--~~~l~~~~- 71 (294)
.++|++|.+.-+.. ++..+.|++ +++++.++.... +.+.+.+.+.+ .++|.++..+..-+. .+.++..+
T Consensus 21 g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~naV~~~~~~l~~~~~ 100 (286)
T 1jr2_A 21 HMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNK 100 (286)
T ss_dssp -CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHHHHHHHHHHHhccc
Confidence 47899998621433 556677877 678776554220 12334455444 678888876432221 11122111
Q ss_pred ------------CCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeecccccccc
Q psy5259 72 ------------ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHL 139 (294)
Q Consensus 72 ------------~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~ 139 (294)
+++++.+ +|- --.+.+++.|+.+-.....+++.++++.... ..++-+++...+.+....-.
T Consensus 101 ~~~~~~d~~~~l~~~~i~a---VG~--~Ta~aL~~~G~~~~~p~~~~ae~L~~~l~~~--~~~g~~vLi~rg~~~r~~L~ 173 (286)
T 1jr2_A 101 TEVWERSLKEKWNAKSVYV---VGN--ATASLVSKIGLDTEGETCGNAEKLAEYICSR--ESSALPLLFPCGNLKREILP 173 (286)
T ss_dssp HHHHHHHTHHHHHHSEEEE---CSH--HHHHHHHHTTCCCSCCSCSSHHHHHHHHHTS--CCCSSCEEEEESCGGGCCHH
T ss_pred cccchhhHHHHhccCcEEE---ECH--HHHHHHHHcCCCcCCCCccCHHHHHHHHHhc--ccCCCeEEEECChhhHHHHH
Confidence 2333333 231 1134678899887222344677766643211 12455777777776666656
Q ss_pred chhhccCcEEEeeCCCch
Q psy5259 140 DQIKSRGIRVGTVGPVSS 157 (294)
Q Consensus 140 ~~~~~~GI~v~~~~~~~~ 157 (294)
+.++++|+.|...+-|..
T Consensus 174 ~~L~~~G~~v~~~~~Y~~ 191 (286)
T 1jr2_A 174 KALKDKGIAMESITVYQT 191 (286)
T ss_dssp HHHHTTTCCEEEEECEEE
T ss_pred HHHHHCCCeeEEEEEEEE
Confidence 788999998887776543
No 137
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=63.00 E-value=3.8 Score=34.89 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=30.5
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccc----ccc--cCcCCCHHHHHHHHHcC
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR----KQF--RGGLLDQEALVEFLRDK 267 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~----~~~--RG~lvde~aL~~aL~~g 267 (294)
.+++++++++|+|++++| ....+.++.. ..+ -..-+..+.+.+.+..+
T Consensus 52 ~~~~~~~~~~D~Vi~~v~-~~~~~~v~~~l~~~~~vv~~~~~~~~~~l~~~~~~~ 105 (259)
T 2ahr_A 52 MSHQDLIDQVDLVILGIK-PQLFETVLKPLHFKQPIISMAAGISLQRLATFVGQD 105 (259)
T ss_dssp SSHHHHHHTCSEEEECSC-GGGHHHHHTTSCCCSCEEECCTTCCHHHHHHHHCTT
T ss_pred CCHHHHHhcCCEEEEEeC-cHhHHHHHHHhccCCEEEEeCCCCCHHHHHHhcCCC
Confidence 478899999999999999 5444444421 122 21224566677777654
No 138
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=62.61 E-value=2.4 Score=35.35 Aligned_cols=45 Identities=13% Similarity=0.236 Sum_probs=26.0
Q ss_pred cCcCCCEEEEEcc------------cCCCcc--cCH-HHHhccCCEEEEecCCCccccccc
Q psy5259 200 IGLNGSTVGIVGT------------ELGAQL--VPL-DTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 200 ~~l~gktvgIiG~------------~~~~~~--~~l-~ell~~sDvV~l~~p~t~~T~~li 245 (294)
-++.+++++|||. ..+.+. .+. ++.+++||+|++++| .+.++.++
T Consensus 15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~aD~vi~av~-~~~~~~v~ 74 (209)
T 2raf_A 15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVP-YPALAALA 74 (209)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCSSCCSEEEECSC-HHHHHHHH
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHhccCCEEEEcCC-cHHHHHHH
Confidence 4577899999999 222211 111 126788999999999 65555544
No 139
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=60.98 E-value=6.5 Score=33.86 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=30.1
Q ss_pred cCHHHHhc-cCCEEEEecCCCcccccccc-------cccc-----cCcCCCHHHHHHHHHcC
Q psy5259 219 VPLDTLCA-QSDFIFVTCALTKDTEQLIG-------RKQF-----RGGLLDQEALVEFLRDK 267 (294)
Q Consensus 219 ~~l~ell~-~sDvV~l~~p~t~~T~~li~-------~~~~-----RG~lvde~aL~~aL~~g 267 (294)
.+++++++ +||+|++++|.. .+..++. ...+ ++.....+.+.+.+.++
T Consensus 53 ~~~~~~~~~~aDvVilavp~~-~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~ 113 (281)
T 2g5c_A 53 TSIAKVEDFSPDFVMLSSPVR-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR 113 (281)
T ss_dssp SCGGGGGGTCCSEEEECSCHH-HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG
T ss_pred CCHHHHhcCCCCEEEEcCCHH-HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc
Confidence 46888899 999999999954 4444432 1111 33333346677777664
No 140
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=60.77 E-value=5.2 Score=35.21 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=33.3
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccc-----cc-cCcCC---------CHHHHHHHHHcCCc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRK-----QF-RGGLL---------DQEALVEFLRDKKI 269 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~-----~~-RG~lv---------de~aL~~aL~~g~i 269 (294)
.+++++++++|+|++++|....++..+... .+ .|.+| ..+.+.+.+....+
T Consensus 78 ~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~ 143 (316)
T 2uyy_A 78 RTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG 143 (316)
T ss_dssp SCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 368888999999999999766666665431 22 33322 35667777765433
No 141
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=60.66 E-value=5.9 Score=37.77 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=38.7
Q ss_pred cCHHHHhc---cCCEEEEecCCCcccccccc-------cccc-----cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259 219 VPLDTLCA---QSDFIFVTCALTKDTEQLIG-------RKQF-----RGGLLDQEALVEFLRDKKIGGAGLDVM 277 (294)
Q Consensus 219 ~~l~ell~---~sDvV~l~~p~t~~T~~li~-------~~~~-----RG~lvde~aL~~aL~~g~i~ga~LDV~ 277 (294)
.+++++++ .+|+|++++|..+.++.++. ...+ .+.-.+...+.+.|.+..+.....-|.
T Consensus 57 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVs 130 (484)
T 4gwg_A 57 QSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVS 130 (484)
T ss_dssp SSHHHHHHTBCSSCEEEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCHHHHHhhccCCCEEEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCcc
Confidence 57888877 49999999998777766552 1111 333335677788888776654444343
No 142
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=60.32 E-value=7.4 Score=33.91 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=16.7
Q ss_pred cCHHHHhccCCEEEEecCC
Q psy5259 219 VPLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~ 237 (294)
.+..+++++||+|++++|.
T Consensus 55 ~~~~~~~~~aDvVilav~p 73 (280)
T 3tri_A 55 QDNRQGALNADVVVLAVKP 73 (280)
T ss_dssp SCHHHHHSSCSEEEECSCG
T ss_pred CChHHHHhcCCeEEEEeCH
Confidence 3788999999999999984
No 143
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=60.21 E-value=1.1e+02 Score=30.79 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=68.5
Q ss_pred CCeEEEecCCCCCCchhHH----Hhhc-cceEEEcCCCCCCCCHHHHHHHc--cCCcEEEeCCCCCCCHHHHhhcCCCce
Q psy5259 3 KPKLLLTRNDYPRVSPAYD----ILED-MFDIITYPISEGRMPRDIFIEKL--KGCSALLCNPHQKVDKEALDESGENLK 75 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~----~l~~-~~~v~~~~~~~~~~~~e~~~~~l--~~~d~~~~~~~~~~~~~~l~~~~~~lk 75 (294)
+|||++....-...+.... .|+. +|+|+.... ..+.|++++.. .++|++..++......+.+.+.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~---~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~v----- 675 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPL---FQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPEL----- 675 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCT---TCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHH-----
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCC---CCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHH-----
Confidence 6888876542221122222 2333 799987544 57889998776 4688888765433333332221
Q ss_pred EEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeecc-ccccccchhhccCcEEEeeCC
Q psy5259 76 VISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVG-HDHLHLDQIKSRGIRVGTVGP 154 (294)
Q Consensus 76 ~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G-~d~id~~~~~~~GI~v~~~~~ 154 (294)
++.+++.|+ +.+++ ...| .-.-|.+.+.+.|+--...++
T Consensus 676 -------------i~~Lr~~G~------------------------~dv~V---ivGG~~P~~d~~~l~~~GaD~~f~pg 715 (762)
T 2xij_A 676 -------------IKELNSLGR------------------------PDILV---MCGGVIPPQDYEFLFEVGVSNVFGPG 715 (762)
T ss_dssp -------------HHHHHHTTC------------------------TTSEE---EEEESCCGGGHHHHHHHTCCEEECTT
T ss_pred -------------HHHHHhcCC------------------------CCCEE---EEeCCCCcccHHHHHhCCCCEEeCCC
Confidence 122344332 22111 1122 222256667888888778788
Q ss_pred CchHHHHHHHHHHHHH
Q psy5259 155 VSSDAVAEFNIGLAIA 170 (294)
Q Consensus 155 ~~~~~VAE~al~l~l~ 170 (294)
.+...+++.+..++-.
T Consensus 716 td~~e~~~~i~~~l~~ 731 (762)
T 2xij_A 716 TRIPKAAVQVLDDIEK 731 (762)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999988887643
No 144
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=59.75 E-value=7.5 Score=34.11 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=14.3
Q ss_pred CHHHHhccCCEEEEecCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t 238 (294)
++.+.++++|+|+.+.|..
T Consensus 168 ~~~~~~~~aDiVInaTp~G 186 (277)
T 3don_A 168 HAESHLDEFDIIINTTPAG 186 (277)
T ss_dssp HHHHTGGGCSEEEECCC--
T ss_pred hHHHHhcCCCEEEECccCC
Confidence 3556688999999999974
No 145
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=59.31 E-value=8.5 Score=34.34 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=22.0
Q ss_pred CHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
++++.+++||+|+.+.|.+ ..++..+.+
T Consensus 176 ~~~eav~~aDIVi~aT~s~---~pvl~~~~l 203 (313)
T 3hdj_A 176 APADIAAQADIVVTATRST---TPLFAGQAL 203 (313)
T ss_dssp CHHHHHHHCSEEEECCCCS---SCSSCGGGC
T ss_pred CHHHHHhhCCEEEEccCCC---CcccCHHHc
Confidence 8899999999999999854 455555544
No 146
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=58.79 E-value=6.8 Score=34.72 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=20.6
Q ss_pred CCCcccCHHHHhc--cCCEEEEecCCCc
Q psy5259 214 LGAQLVPLDTLCA--QSDFIFVTCALTK 239 (294)
Q Consensus 214 ~~~~~~~l~ell~--~sDvV~l~~p~t~ 239 (294)
++..+.+++++++ +.|+|+++.|-..
T Consensus 48 ~~~~~~~~~~~l~~~~~D~V~i~tp~~~ 75 (331)
T 4hkt_A 48 YGCEVRTIDAIEAAADIDAVVICTPTDT 75 (331)
T ss_dssp TTCEECCHHHHHHCTTCCEEEECSCGGG
T ss_pred hCCCcCCHHHHhcCCCCCEEEEeCCchh
Confidence 3444678999998 7999999999543
No 147
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=58.72 E-value=2 Score=37.07 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=21.2
Q ss_pred HHHHhccCCEEEEecCCCccccccccccc
Q psy5259 221 LDTLCAQSDFIFVTCALTKDTEQLIGRKQ 249 (294)
Q Consensus 221 l~ell~~sDvV~l~~p~t~~T~~li~~~~ 249 (294)
++++++++|+|+.+.. +.+++.++|+..
T Consensus 112 ~~~~~~~~DvVi~~~d-~~~~r~~l~~~~ 139 (251)
T 1zud_1 112 LKDAVARADVVLDCTD-NMATRQEINAAC 139 (251)
T ss_dssp HHHHHHHCSEEEECCS-SHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEECCC-CHHHHHHHHHHH
Confidence 5577888999998887 667777776644
No 148
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=58.62 E-value=5.2 Score=34.18 Aligned_cols=20 Identities=10% Similarity=0.100 Sum_probs=17.0
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.+++++++++|+|++++|..
T Consensus 60 ~~~~~~~~~~Dvvi~av~~~ 79 (266)
T 3d1l_A 60 TDLAEVNPYAKLYIVSLKDS 79 (266)
T ss_dssp SCGGGSCSCCSEEEECCCHH
T ss_pred CCHHHHhcCCCEEEEecCHH
Confidence 36778889999999999955
No 149
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=58.56 E-value=4.2 Score=35.37 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=33.6
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccc----------ccc-----cCcCCCHHHHHHHHHcC
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR----------KQF-----RGGLLDQEALVEFLRDK 267 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~----------~~~-----RG~lvde~aL~~aL~~g 267 (294)
.+++++++++|+|++++|-...++..+.. ..+ .|...+.+.|.+.+.+.
T Consensus 52 ~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~ 115 (301)
T 3cky_A 52 ENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK 115 (301)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 46889999999999999976666666531 111 33323567788888764
No 150
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=57.21 E-value=8.3 Score=34.70 Aligned_cols=29 Identities=10% Similarity=0.032 Sum_probs=21.6
Q ss_pred cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
.+|++.+++||+|+.+.+.. .-+|.++.+
T Consensus 237 ~~L~e~l~~ADIVIsAtg~p---~~vI~~e~v 265 (320)
T 1edz_A 237 DLLKKCSLDSDVVITGVPSE---NYKFPTEYI 265 (320)
T ss_dssp HHHHHHHHHCSEEEECCCCT---TCCBCTTTS
T ss_pred hHHHHHhccCCEEEECCCCC---cceeCHHHc
Confidence 45889999999999999842 223666666
No 151
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=56.57 E-value=9.6 Score=34.54 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=21.7
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQ 249 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~ 249 (294)
.++++++++||+|+++.|.. ....++..+.
T Consensus 186 ~~~~eav~~aDiVi~aTps~-~~~pvl~~~~ 215 (350)
T 1x7d_A 186 SSVAEAVKGVDIITTVTADK-AYATIITPDM 215 (350)
T ss_dssp SSHHHHHTTCSEEEECCCCS-SEEEEECGGG
T ss_pred CCHHHHHhcCCEEEEeccCC-CCCceecHHH
Confidence 47999999999999999975 2234444333
No 152
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=55.13 E-value=11 Score=33.17 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHcCCc
Q psy5259 254 LLDQEALVEFLRDKKI 269 (294)
Q Consensus 254 lvde~aL~~aL~~g~i 269 (294)
+.|.+.+++.+..|.-
T Consensus 241 V~d~~~~~~~i~~Gg~ 256 (270)
T 3l5o_A 241 VKDNARAFRIVAGAEK 256 (270)
T ss_dssp ESCHHHHHHHHTTSSC
T ss_pred EcCHHHHHHHHhcCCC
Confidence 4688999999888753
No 153
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=54.48 E-value=7.3 Score=33.71 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=17.3
Q ss_pred cCHHHHhccCCEEEEecCCCc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTK 239 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~ 239 (294)
.++++++++||+|++++|...
T Consensus 58 ~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 58 ADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp SCTTTTGGGCSEEEECSCHHH
T ss_pred CCHHHhhcCCCEEEEcCCHHH
Confidence 467788899999999999543
No 154
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=53.19 E-value=2.4 Score=36.54 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=20.4
Q ss_pred HHHHhccCCEEEEecCCCccccccccccc
Q psy5259 221 LDTLCAQSDFIFVTCALTKDTEQLIGRKQ 249 (294)
Q Consensus 221 l~ell~~sDvV~l~~p~t~~T~~li~~~~ 249 (294)
++++++++|+|+.+.+ +.+++.++++..
T Consensus 115 ~~~~~~~~DvVi~~~d-~~~~~~~l~~~~ 142 (249)
T 1jw9_B 115 LAALIAEHDLVLDCTD-NVAVRNQLNAGC 142 (249)
T ss_dssp HHHHHHTSSEEEECCS-SHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEeCC-CHHHHHHHHHHH
Confidence 4567888999998886 567777666543
No 155
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=53.11 E-value=12 Score=32.99 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=18.2
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|+++.|-.
T Consensus 56 ~~~~~~ll~~~~~D~V~i~tp~~ 78 (329)
T 3evn_A 56 YDKLEDMLADESIDVIYVATINQ 78 (329)
T ss_dssp ESCHHHHHTCTTCCEEEECSCGG
T ss_pred cCCHHHHhcCCCCCEEEECCCcH
Confidence 568999998 799999999954
No 156
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=52.90 E-value=12 Score=34.40 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=11.1
Q ss_pred CcCCCEEEEEcc
Q psy5259 201 GLNGSTVGIVGT 212 (294)
Q Consensus 201 ~l~gktvgIiG~ 212 (294)
.+.|++|+|+|+
T Consensus 306 ~~~~~~v~vlGl 317 (402)
T 1dlj_A 306 ESPVKVVGVYRL 317 (402)
T ss_dssp CCSSCEEEEECC
T ss_pred CCCCCEEEEEee
Confidence 578999999999
No 157
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=52.90 E-value=6.8 Score=33.32 Aligned_cols=24 Identities=0% Similarity=-0.150 Sum_probs=19.2
Q ss_pred cCHHHHhccCCEEEEecCCCcccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTE 242 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~ 242 (294)
.++++++++||+|++++|.....+
T Consensus 48 ~~~~~~~~~aDvvi~~v~~~~~~~ 71 (264)
T 1i36_A 48 ETSEEDVYSCPVVISAVTPGVALG 71 (264)
T ss_dssp ECCHHHHHTSSEEEECSCGGGHHH
T ss_pred CCHHHHHhcCCEEEEECCCHHHHH
Confidence 567788999999999999765433
No 158
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=52.70 E-value=17 Score=34.16 Aligned_cols=19 Identities=5% Similarity=0.018 Sum_probs=15.9
Q ss_pred CHHHHhccCCEEEEecCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t 238 (294)
++++.++.+|+|+++.+-.
T Consensus 381 ~~~~~~~~ad~vvi~t~~~ 399 (446)
T 4a7p_A 381 NPYAAADGADALVIVTEWD 399 (446)
T ss_dssp CHHHHHTTBSEEEECSCCT
T ss_pred ChhHHhcCCCEEEEeeCCH
Confidence 5788899999999988754
No 159
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=51.79 E-value=7.1 Score=34.01 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=82.2
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCC----CCCHHHHHHHcc-CCcEEEeCCCCCCCH--HHHhhcC---
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEG----RMPRDIFIEKLK-GCSALLCNPHQKVDK--EALDESG--- 71 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~----~~~~e~~~~~l~-~~d~~~~~~~~~~~~--~~l~~~~--- 71 (294)
-++||+|.+ -+ .++..+.|++ +++++.++.... ....++.++.+. ++|.++..+...+.. +.+.+.+
T Consensus 33 G~~VlvtR~-~~-~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~naV~~~~~~l~~~~~~~ 110 (286)
T 3d8t_A 33 TMRIAYAGL-RR-KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDL 110 (286)
T ss_dssp CCEEEECCS-SC-HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEeCC-Cc-hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECHHHHHHHHHHHHHcCchH
Confidence 468999986 34 3566677766 677776553210 112344455574 689888765322211 1122111
Q ss_pred ----CCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCc-ceEEEeeccccccccchhhccC
Q psy5259 72 ----ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNL-KVISTFSVGHDHLHLDQIKSRG 146 (294)
Q Consensus 72 ----~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~L-k~i~~~~~G~d~id~~~~~~~G 146 (294)
.++++++ +|- --.+.+++.|+.+-..|..+++.+++... ..- +++...+.+....-.+.++++|
T Consensus 111 ~~~l~~~~i~a---VG~--~Ta~aL~~~G~~~~~~p~~~~e~L~~~l~------~g~~~vLi~r~~~~~~~L~~~L~~~G 179 (286)
T 3d8t_A 111 EGPLAKAFRLA---RGA--KAARALKEAGLPPHAVGDGTSKSLLPLLP------QGRGVAALQLYGKPLPLLENALAERG 179 (286)
T ss_dssp HHHHHHSEEEE---SSH--HHHHHHHHTTCCCSEECSSSGGGGGGGCC------CCCSEEEEECSSSCCHHHHHHHHHTT
T ss_pred HHHhcCCeEEE---ECH--HHHHHHHHcCCCccccccccHHHHHHHHH------cCCceEEEEccCcccHHHHHHHHHCC
Confidence 1233333 221 11356789999876666778888887521 144 5555555554444457788999
Q ss_pred cEEEeeCCCchH
Q psy5259 147 IRVGTVGPVSSD 158 (294)
Q Consensus 147 I~v~~~~~~~~~ 158 (294)
+.|...+-|...
T Consensus 180 ~~v~~~~~Y~~~ 191 (286)
T 3d8t_A 180 YRVLPLMPYRHL 191 (286)
T ss_dssp CEEEEECSEEEE
T ss_pred CEEEEEEEEEEe
Confidence 999988876443
No 160
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=51.24 E-value=13 Score=32.50 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=18.6
Q ss_pred ccCHHHHhccCCEEEEecCCC
Q psy5259 218 LVPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t 238 (294)
+.++++++++.|+|+++.|-.
T Consensus 57 ~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 57 FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CSCHHHHHTTCSEEEECCCGG
T ss_pred cCCHHHHHhcCCEEEEeCCcH
Confidence 578999999999999999944
No 161
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=49.97 E-value=1.9e+02 Score=28.80 Aligned_cols=119 Identities=10% Similarity=0.043 Sum_probs=65.6
Q ss_pred CCeEEEecCCCCCCchhHH----Hhhc-cceEEEcCCCCCCCCHHHHHHHc--cCCcEEEeCCCCCCCHHHHhhcCCCce
Q psy5259 3 KPKLLLTRNDYPRVSPAYD----ILED-MFDIITYPISEGRMPRDIFIEKL--KGCSALLCNPHQKVDKEALDESGENLK 75 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~----~l~~-~~~v~~~~~~~~~~~~e~~~~~l--~~~d~~~~~~~~~~~~~~l~~~~~~lk 75 (294)
+|||++....-..++.... .|+. +|+|+.... ..+.|++++.. .++|++..++......+.+.+.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~---~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~v----- 667 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPL---FQTPEETARQAVEADVHVVGVSSLAGGHLTLVPAL----- 667 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCT---TBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHH-----
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCC---CCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHH-----
Confidence 6888876542222222222 2333 799987544 46889988776 4678888765333332222221
Q ss_pred EEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCC
Q psy5259 76 VISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV 155 (294)
Q Consensus 76 ~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~ 155 (294)
++.+++.|+ +.+++ ..|...-.-|.+.+.+.|+--...++.
T Consensus 668 -------------i~~L~~~G~------------------------~~i~V--ivGG~~p~~d~~~l~~~GaD~~f~~gt 708 (727)
T 1req_A 668 -------------RKELDKLGR------------------------PDILI--TVGGVIPEQDFDELRKDGAVEIYTPGT 708 (727)
T ss_dssp -------------HHHHHHTTC------------------------TTSEE--EEEESCCGGGHHHHHHTTEEEEECTTC
T ss_pred -------------HHHHHhcCC------------------------CCCEE--EEcCCCccccHHHHHhCCCCEEEcCCc
Confidence 122333332 22111 111112223566678889888888888
Q ss_pred chHHHHHHHHHHH
Q psy5259 156 SSDAVAEFNIGLA 168 (294)
Q Consensus 156 ~~~~VAE~al~l~ 168 (294)
....++......+
T Consensus 709 ~~~e~a~~l~~~l 721 (727)
T 1req_A 709 VIPESAISLVKKL 721 (727)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 8888887776554
No 162
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=49.54 E-value=8.9 Score=34.67 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=19.2
Q ss_pred cCHHHHhcc----CCEEEEecCCCccccccc
Q psy5259 219 VPLDTLCAQ----SDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 219 ~~l~ell~~----sDvV~l~~p~t~~T~~li 245 (294)
.++++++++ ||+|++++|. ..+..++
T Consensus 56 ~~~~e~~~~a~~~aDlVilavP~-~~~~~vl 85 (341)
T 3ktd_A 56 ADLEATLQRAAAEDALIVLAVPM-TAIDSLL 85 (341)
T ss_dssp SCHHHHHHHHHHTTCEEEECSCH-HHHHHHH
T ss_pred CCHHHHHHhcccCCCEEEEeCCH-HHHHHHH
Confidence 467787765 6999999994 4566555
No 163
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=49.24 E-value=11 Score=32.60 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=19.1
Q ss_pred cCHHHHhccCCEEEEecCCCccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
.++.+.+++||+|++++|... ++.++
T Consensus 59 ~~~~~~~~~aDvVi~av~~~~-~~~v~ 84 (286)
T 3c24_A 59 TDGDGWIDEADVVVLALPDNI-IEKVA 84 (286)
T ss_dssp CCSSGGGGTCSEEEECSCHHH-HHHHH
T ss_pred CCHHHHhcCCCEEEEcCCchH-HHHHH
Confidence 466788899999999999543 44443
No 164
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=48.32 E-value=76 Score=23.06 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=54.6
Q ss_pred CCCCeEEEecCCCCCCc-hhHHHhhc-cceEEEcCCCCCCCCHHHHHHHcc----CCcEEEeCCC-CCCCH-HH---Hhh
Q psy5259 1 MSKPKLLLTRNDYPRVS-PAYDILED-MFDIITYPISEGRMPRDIFIEKLK----GCSALLCNPH-QKVDK-EA---LDE 69 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~-~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~----~~d~~~~~~~-~~~~~-~~---l~~ 69 (294)
|++++||+.+. -+... .....|++ ++++..+. +.++..+.+. ..|++++... ...+. ++ +.+
T Consensus 1 M~~~~ilivdd-~~~~~~~l~~~l~~~g~~v~~~~------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 73 (143)
T 3jte_A 1 MSLAKILVIDD-ESTILQNIKFLLEIDGNEVLTAS------SSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKK 73 (143)
T ss_dssp --CCEEEEECS-CHHHHHHHHHHHHHTTCEEEEES------SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHhCCceEEEeC------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 88999999985 33111 22233443 57776543 3455555543 6899987532 22332 22 333
Q ss_pred cCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhh
Q psy5259 70 SGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFN 114 (294)
Q Consensus 70 ~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~ 114 (294)
..|++++|...+- .+.-....+-+.|+.-.-.-++..+.+.+..
T Consensus 74 ~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l 117 (143)
T 3jte_A 74 ITPHMAVIILTGH-GDLDNAILAMKEGAFEYLRKPVTAQDLSIAI 117 (143)
T ss_dssp HCTTCEEEEEECT-TCHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred hCCCCeEEEEECC-CCHHHHHHHHHhCcceeEeCCCCHHHHHHHH
Confidence 3578888875332 2222334445566554444456666655544
No 165
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=47.71 E-value=17 Score=34.39 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=15.6
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.++++.++.||+|+++.+-.
T Consensus 406 ~~~~~~~~~ad~vvi~t~~~ 425 (478)
T 3g79_A 406 DNLEEVVRNADAIVVLAGHS 425 (478)
T ss_dssp SCHHHHHTTCSEEEECSCCH
T ss_pred cCHHHHHhcCCEEEEecCCH
Confidence 36788888999999887743
No 166
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=47.58 E-value=17 Score=31.78 Aligned_cols=35 Identities=26% Similarity=0.550 Sum_probs=24.0
Q ss_pred cCcCCCEEEEEcc-----------------cC----CCcc-cCHHHHhccCCEEEEe
Q psy5259 200 IGLNGSTVGIVGT-----------------EL----GAQL-VPLDTLCAQSDFIFVT 234 (294)
Q Consensus 200 ~~l~gktvgIiG~-----------------~~----~~~~-~~l~ell~~sDvV~l~ 234 (294)
....|++|++||+ +. +... ...++++++||+|++.
T Consensus 137 ~~~~g~kV~vIG~~P~i~~~l~~~~~v~V~d~~p~~g~~p~~~~e~ll~~aD~viiT 193 (270)
T 2h1q_A 137 NEVKGKKVGVVGHFPHLESLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVYIT 193 (270)
T ss_dssp TTTTTSEEEEESCCTTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEEEE
T ss_pred hhcCCCEEEEECCCHHHHHHHhCCCCEEEEECCCCCCCCChHHHHHHhhcCCEEEEE
Confidence 3458999999999 11 1112 2367788888888875
No 167
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=47.55 E-value=11 Score=33.48 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=18.4
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|+++.|-.
T Consensus 53 ~~~~~~ll~~~~~D~V~i~tp~~ 75 (344)
T 3ezy_A 53 YKDPHELIEDPNVDAVLVCSSTN 75 (344)
T ss_dssp ESSHHHHHHCTTCCEEEECSCGG
T ss_pred eCCHHHHhcCCCCCEEEEcCCCc
Confidence 568999998 799999999954
No 168
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=47.15 E-value=10 Score=32.09 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=16.7
Q ss_pred cCHHHHhccCCEEEEecCC
Q psy5259 219 VPLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~ 237 (294)
.+.++++++||+|++++|.
T Consensus 55 ~~~~e~~~~aDvVilav~~ 73 (247)
T 3gt0_A 55 TDNNEVAKNADILILSIKP 73 (247)
T ss_dssp SCHHHHHHHCSEEEECSCT
T ss_pred CChHHHHHhCCEEEEEeCH
Confidence 4788999999999999974
No 169
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=46.50 E-value=16 Score=32.33 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=18.6
Q ss_pred ccCHHHHhc--cCCEEEEecCCCc
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALTK 239 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t~ 239 (294)
+.+++++++ +.|+|+++.|-..
T Consensus 54 ~~~~~~~l~~~~~D~V~i~tp~~~ 77 (344)
T 3euw_A 54 VASPDEVFARDDIDGIVIGSPTST 77 (344)
T ss_dssp ESSHHHHTTCSCCCEEEECSCGGG
T ss_pred eCCHHHHhcCCCCCEEEEeCCchh
Confidence 468999999 8999999999543
No 170
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=46.25 E-value=8.5 Score=32.78 Aligned_cols=143 Identities=16% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC-CCH---HHHHHHc-cCCcEEEeCCCCCCC--HHHHhhcC---
Q psy5259 3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR-MPR---DIFIEKL-KGCSALLCNPHQKVD--KEALDESG--- 71 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~-~~~---e~~~~~l-~~~d~~~~~~~~~~~--~~~l~~~~--- 71 (294)
-++||+|.+ -+ .++..+.|++ +++++.++..... .+. ++.++.+ .++|.++..+...+. -+.+.+.+
T Consensus 8 g~~vlvtr~-~~-~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~~~~~ 85 (261)
T 1wcw_A 8 AVRVAYAGL-RR-KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDL 85 (261)
T ss_dssp CCEEEECCS-TT-HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEeCC-Cc-hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHhCchH
Confidence 468999986 34 3566667776 6777766542211 122 3344456 368988876432221 11122111
Q ss_pred ----CCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCc-ceEEEeeccccccccchhhccC
Q psy5259 72 ----ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNL-KVISTFSVGHDHLHLDQIKSRG 146 (294)
Q Consensus 72 ----~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~L-k~i~~~~~G~d~id~~~~~~~G 146 (294)
.++++++ +|- --.+.+++.|+.+-..|..+++.+++... .+- ++....+.+....-.+.++++|
T Consensus 86 ~~~l~~~~i~a---vG~--~Ta~~l~~~G~~~~~~p~~~~e~L~~~l~------~g~~~vL~~r~~~~~~~L~~~L~~~G 154 (261)
T 1wcw_A 86 EGPLAKAFRLA---RGA--KAARALKEAGLPPHAVGDGTSKSLLPLLP------QGRGVAALQLYGKPLPLLENALAERG 154 (261)
T ss_dssp HHHHHHSEEEE---SSH--HHHHHHHHTTCCCSEECSSSHHHHGGGSC------CCCEEEEEECCSSCCHHHHHHHHHTT
T ss_pred HHHhcCCeEEE---ECH--HHHHHHHHcCCCCCcccCccHHHHHHHHH------cCCceEEEEccCcccHHHHHHHHHCC
Confidence 1233333 221 11356788998876666678888887521 144 5666555555544457788999
Q ss_pred cEEEeeCCCchH
Q psy5259 147 IRVGTVGPVSSD 158 (294)
Q Consensus 147 I~v~~~~~~~~~ 158 (294)
+.|...+-|...
T Consensus 155 ~~v~~~~~Y~~~ 166 (261)
T 1wcw_A 155 YRVLPLMPYRHL 166 (261)
T ss_dssp EEEEEECSEEEE
T ss_pred CEEEEEeeEEEe
Confidence 999888876443
No 171
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=45.99 E-value=20 Score=31.91 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=20.8
Q ss_pred ccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~ 250 (294)
..++++++ ++|+|+++.|.. ..++..+.+
T Consensus 179 ~~~~~e~v-~aDvVi~aTp~~---~pv~~~~~l 207 (322)
T 1omo_A 179 VQPAEEAS-RCDVLVTTTPSR---KPVVKAEWV 207 (322)
T ss_dssp ECCHHHHT-SSSEEEECCCCS---SCCBCGGGC
T ss_pred ECCHHHHh-CCCEEEEeeCCC---CceecHHHc
Confidence 45788999 999999999954 344444333
No 172
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=45.61 E-value=13 Score=32.84 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=19.1
Q ss_pred cccCHHHHhc--cCCEEEEecCCCc
Q psy5259 217 QLVPLDTLCA--QSDFIFVTCALTK 239 (294)
Q Consensus 217 ~~~~l~ell~--~sDvV~l~~p~t~ 239 (294)
.+.+++++++ +.|+|+++.|-..
T Consensus 55 ~~~~~~~ll~~~~~D~V~i~tp~~~ 79 (330)
T 3e9m_A 55 AYGSYEELCKDETIDIIYIPTYNQG 79 (330)
T ss_dssp CBSSHHHHHHCTTCSEEEECCCGGG
T ss_pred eeCCHHHHhcCCCCCEEEEcCCCHH
Confidence 3568999998 7999999999554
No 173
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=45.48 E-value=6.4 Score=37.33 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=34.2
Q ss_pred cCHHHHhcc---CCEEEEecCCCccccccccc-------ccc-----cCcCCCHHHHHHHHHcCCce
Q psy5259 219 VPLDTLCAQ---SDFIFVTCALTKDTEQLIGR-------KQF-----RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 219 ~~l~ell~~---sDvV~l~~p~t~~T~~li~~-------~~~-----RG~lvde~aL~~aL~~g~i~ 270 (294)
.+++++++. ||+|++++|..+.++.++.. ..+ .|.-.+.+.+.+.+.+..+.
T Consensus 67 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~ 133 (480)
T 2zyd_A 67 YTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133 (480)
T ss_dssp SSHHHHHHTBCSSCEEEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence 468888887 99999999987766666531 111 33323556677888765443
No 174
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=44.48 E-value=0.69 Score=43.01 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=60.9
Q ss_pred CCceEEEeccccCcccChhhHh-----hCCcEEeecCCCChhhhhhhhHHHHHHc-cCcceEEEeeccccc-----cccc
Q psy5259 72 ENLKVISTFSVGHDHLHLDQIK-----SRGIRVGTVGPVSSDAVAEFNIGLAIAV-KNLKVISTFSVGHDH-----LHLD 140 (294)
Q Consensus 72 ~~lk~i~~~~~G~d~id~~~~~-----~~gI~v~~~~~~~~~~vae~~~~~~l~~-~~Lk~i~~~~~G~d~-----id~~ 140 (294)
+.++.|...++|+|++++.+.. ++++.+++.+|. ...+++.++..++.+ ++++.-...+.+... +...
T Consensus 80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~~~~~s~a~~av~~a 158 (404)
T 1gpj_A 80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRISEGAVSIGSAAVELA 158 (404)
T ss_dssp HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTTCSCCSHHHHHHHHH
T ss_pred hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhcCCCccHHHHHHHHH
Confidence 4577888899999999999987 888999998888 567888888777766 454432221111111 1111
Q ss_pred h-h--hccCcEEEeeC-CCchHHHHHHHHH
Q psy5259 141 Q-I--KSRGIRVGTVG-PVSSDAVAEFNIG 166 (294)
Q Consensus 141 ~-~--~~~GI~v~~~~-~~~~~~VAE~al~ 166 (294)
. . ...|.+|...+ |..+..++.+...
T Consensus 159 ~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~ 188 (404)
T 1gpj_A 159 ERELGSLHDKTVLVVGAGEMGKTVAKSLVD 188 (404)
T ss_dssp HHHHSCCTTCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHhccccCCEEEEEChHHHHHHHHHHHHH
Confidence 1 1 13566666554 6667777776654
No 175
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=42.81 E-value=1.2e+02 Score=23.77 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=32.4
Q ss_pred CCeEEEecCCCCCCchhHH----Hhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCC
Q psy5259 3 KPKLLLTRNDYPRVSPAYD----ILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNP 58 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~----~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~ 58 (294)
+++|++..+.-...+-... .|+. +|+|+.... ..+.+++.+.+. ++|++..+.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~---~~p~e~lv~aa~~~~~diV~lS~ 77 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL---RQTPEQVAMAAVQEDVDVIGVSI 77 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS---BCCHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHhcCCCEEEEEe
Confidence 5787776432222232222 2333 799987665 468888887774 678887664
No 176
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=42.59 E-value=18 Score=30.85 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=18.2
Q ss_pred cCHHHHhccCCEEEEecCCCccccccc
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLI 245 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li 245 (294)
.+++++ ++||+|++++|. +.++.++
T Consensus 50 ~~~~~~-~~~D~vi~av~~-~~~~~~~ 74 (279)
T 2f1k_A 50 QDLSLL-QTAKIIFLCTPI-QLILPTL 74 (279)
T ss_dssp SCGGGG-TTCSEEEECSCH-HHHHHHH
T ss_pred CCHHHh-CCCCEEEEECCH-HHHHHHH
Confidence 468888 999999999994 3344333
No 177
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=42.30 E-value=18 Score=34.07 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=15.8
Q ss_pred CHHHHhccCCEEEEecCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t 238 (294)
++++.++++|.|+++.+-.
T Consensus 393 ~~~~a~~~aDavvi~t~h~ 411 (444)
T 3vtf_A 393 DPQALLDQVEGVIIATAWP 411 (444)
T ss_dssp CHHHHHHHCSEEEECSCCG
T ss_pred CHHHHHhCCCEEEEccCCH
Confidence 6788899999999988754
No 178
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=41.86 E-value=14 Score=34.58 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=15.0
Q ss_pred cCHHHHhccCCEEEEecC
Q psy5259 219 VPLDTLCAQSDFIFVTCA 236 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p 236 (294)
.++++.++.||+|+++-.
T Consensus 387 ~~~~~~~~~aD~iv~~~~ 404 (432)
T 3pid_A 387 RDLNAFKQEADVIISNRM 404 (432)
T ss_dssp CCHHHHHHHCSEEECSSC
T ss_pred CCHHHHHhcCCEEEECCC
Confidence 479999999999887664
No 179
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=40.92 E-value=17 Score=32.30 Aligned_cols=33 Identities=9% Similarity=0.278 Sum_probs=23.7
Q ss_pred ccCHHHHhcc--CCEEEEecCCCc----------ccccccccccc
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
+.+++++|+. -|+|+++.|-.- .-+|++-++=|
T Consensus 75 y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPl 119 (350)
T 4had_A 75 FGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPL 119 (350)
T ss_dssp ESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCC
T ss_pred eCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCc
Confidence 5689999965 799999999432 24556655555
No 180
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=40.25 E-value=1.7e+02 Score=25.65 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=34.8
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+. -..+ .+.-..|. .+.+|..+... + ..+.+.++++|+++... ...++++++.
T Consensus 162 k~vvVIG~-s~iVG~p~A~lL~~~gAtVtv~hs~----t-~~L~~~~~~ADIVI~Avg~p~~I~~~~vk 224 (285)
T 3l07_A 162 AYAVVVGA-SNVVGKPVSQLLLNAKATVTTCHRF----T-TDLKSHTTKADILIVAVGKPNFITADMVK 224 (285)
T ss_dssp CEEEEECC-CTTTHHHHHHHHHHTTCEEEEECTT----C-SSHHHHHTTCSEEEECCCCTTCBCGGGSC
T ss_pred CEEEEECC-CchhHHHHHHHHHHCCCeEEEEeCC----c-hhHHHhcccCCEEEECCCCCCCCCHHHcC
Confidence 46777773 1111 33334444 47888877543 2 34667889999999752 2346666664
No 181
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=40.06 E-value=24 Score=30.96 Aligned_cols=21 Identities=10% Similarity=0.363 Sum_probs=17.9
Q ss_pred ccCHHHHh-ccCCEEEEecCCC
Q psy5259 218 LVPLDTLC-AQSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell-~~sDvV~l~~p~t 238 (294)
+.++++++ ++.|+|++++|-.
T Consensus 52 ~~~~~~~l~~~~D~V~i~tp~~ 73 (325)
T 2ho3_A 52 FDQLEVFFKSSFDLVYIASPNS 73 (325)
T ss_dssp ESCHHHHHTSSCSEEEECSCGG
T ss_pred eCCHHHHhCCCCCEEEEeCChH
Confidence 46899999 7899999999943
No 182
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=39.71 E-value=28 Score=29.95 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=40.5
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccc--------ccc---cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR--------KQF---RGGLLDQEALVEFLRDKKIGGAGLDVMI 278 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~--------~~~---RG~lvde~aL~~aL~~g~i~ga~LDV~~ 278 (294)
.++++.+++||+|+.++|-+.+.+.-+-+ ..+ -.+.+....+.+++..+ ....++..+.
T Consensus 77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~-~~~ig~h~~~ 146 (283)
T 4e12_A 77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRG-DKFLALHFAN 146 (283)
T ss_dssp SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCG-GGEEEEEECS
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCC-cceEEEccCC
Confidence 57899999999999999987554433222 222 55567888888887543 3456777665
No 183
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=39.54 E-value=77 Score=22.16 Aligned_cols=102 Identities=11% Similarity=0.074 Sum_probs=47.5
Q ss_pred CCCCeEEEecCCCCCC-chhHHHhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCCCC--CCC-HHHH---hhc
Q psy5259 1 MSKPKLLLTRNDYPRV-SPAYDILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNPHQ--KVD-KEAL---DES 70 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~-~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~~~--~~~-~~~l---~~~ 70 (294)
|++++||+.+. -+.. ......|++ ++++..+. +.++..+.++ ..|++++.... ..+ -+++ .+.
T Consensus 3 mm~~~ilivdd-~~~~~~~l~~~L~~~g~~v~~~~------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~ 75 (127)
T 2gkg_A 3 HMSKKILIVES-DTALSATLRSALEGRGFTVDETT------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp ---CEEEEECS-CHHHHHHHHHHHHHHTCEEEEEC------CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHS
T ss_pred CCCCeEEEEeC-CHHHHHHHHHHHHhcCceEEEec------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC
Confidence 66779999985 3211 122233443 57776543 3455555443 57888875322 222 2333 222
Q ss_pred --CCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhh
Q psy5259 71 --GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 111 (294)
Q Consensus 71 --~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~va 111 (294)
.+++.+|.. +. .+.-....+.+.|+.-.-.-+++.+.+.
T Consensus 76 ~~~~~~~ii~~-~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~ 116 (127)
T 2gkg_A 76 DDLKNVPIVII-GN-PDGFAQHRKLKAHADEYVAKPVDADQLV 116 (127)
T ss_dssp TTTTTSCEEEE-EC-GGGHHHHHHSTTCCSEEEESSCCHHHHH
T ss_pred ccccCCCEEEE-ec-CCchhHHHHHHhCcchheeCCCCHHHHH
Confidence 367777776 32 2222233344455433333344444433
No 184
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=39.43 E-value=28 Score=32.49 Aligned_cols=20 Identities=0% Similarity=0.160 Sum_probs=15.2
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.++++.++.||+|+++.+-.
T Consensus 366 ~~~~~~~~~ad~vvi~t~~~ 385 (431)
T 3ojo_A 366 HDMSHAVKDASLVLILSDHS 385 (431)
T ss_dssp STTHHHHTTCSEEEECSCCG
T ss_pred CCHHHHHhCCCEEEEecCCH
Confidence 35778888888888887743
No 185
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=38.96 E-value=1.9e+02 Score=25.22 Aligned_cols=60 Identities=5% Similarity=0.027 Sum_probs=35.8
Q ss_pred CCeEEEecCCCCCC-chhHHHh-hc--cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 3 KPKLLLTRNDYPRV-SPAYDIL-ED--MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 3 k~kvl~~~~~~~~~-~~~~~~l-~~--~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
..++++.+.. ..+ ...-..| .. +.+|..+... + +++.+.++++|++++.. ...++++++.
T Consensus 158 gk~vvVvG~s-~iVG~p~A~lL~~~g~~atVtv~h~~----t-~~L~~~~~~ADIVI~Avg~p~~I~~~~vk 223 (281)
T 2c2x_A 158 GAHVVVIGRG-VTVGRPLGLLLTRRSENATVTLCHTG----T-RDLPALTRQADIVVAAVGVAHLLTADMVR 223 (281)
T ss_dssp TCEEEEECCC-TTTHHHHHHHHTSTTTCCEEEEECTT----C-SCHHHHHTTCSEEEECSCCTTCBCGGGSC
T ss_pred CCEEEEECCC-cHHHHHHHHHHhcCCCCCEEEEEECc----h-hHHHHHHhhCCEEEECCCCCcccCHHHcC
Confidence 3567777741 111 2333334 34 5788877542 2 45677889999999762 2356777764
No 186
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=38.67 E-value=1.9e+02 Score=24.89 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.2
Q ss_pred cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCC
Q psy5259 26 MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNP 58 (294)
Q Consensus 26 ~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~ 58 (294)
+|+|+.... ..+.|++++... ++|++..+.
T Consensus 157 G~eVi~LG~---~vp~e~iv~aa~e~~~d~VglS~ 188 (262)
T 1xrs_B 157 MIDAYNLGS---QVANEDFIKKAVELEADVLLVSQ 188 (262)
T ss_dssp TEEEEECCS---SBCHHHHHHHHHHTTCSEEEEEC
T ss_pred CcEEEECCC---CCCHHHHHHHHHHcCCCEEEEEe
Confidence 789987765 578899988764 688888764
No 187
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=37.90 E-value=6.7 Score=33.72 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHhccCCEEEEecCCCcccccccc-------cccc-----cCcCCCHHHHHHHHHcC
Q psy5259 221 LDTLCAQSDFIFVTCALTKDTEQLIG-------RKQF-----RGGLLDQEALVEFLRDK 267 (294)
Q Consensus 221 l~ell~~sDvV~l~~p~t~~T~~li~-------~~~~-----RG~lvde~aL~~aL~~g 267 (294)
++++++++|+|++++|....++..+. ...+ .+...+.+.|.+.+.+.
T Consensus 49 ~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 107 (289)
T 2cvz_A 49 PLERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREK 107 (289)
T ss_dssp CGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCEEEEeCCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 66788899999999996655554431 1111 33334456788888764
No 188
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=37.01 E-value=30 Score=30.74 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=18.4
Q ss_pred ccCHHHHh--ccCCEEEEecCCCc
Q psy5259 218 LVPLDTLC--AQSDFIFVTCALTK 239 (294)
Q Consensus 218 ~~~l~ell--~~sDvV~l~~p~t~ 239 (294)
+.++++++ ++.|+|+++.|-..
T Consensus 55 ~~~~~~~l~~~~~D~V~i~tp~~~ 78 (354)
T 3db2_A 55 DATMEALLAREDVEMVIITVPNDK 78 (354)
T ss_dssp CSSHHHHHHCSSCCEEEECSCTTS
T ss_pred cCCHHHHhcCCCCCEEEEeCChHH
Confidence 56899999 66999999999654
No 189
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=36.57 E-value=72 Score=28.46 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=50.8
Q ss_pred CCeEEEecCCCCCC-chhHHHhhccceEEEcCCC----------------CCCCCHHHHHHHccCCcEEEeCCCCCCCHH
Q psy5259 3 KPKLLLTRNDYPRV-SPAYDILEDMFDIITYPIS----------------EGRMPRDIFIEKLKGCSALLCNPHQKVDKE 65 (294)
Q Consensus 3 k~kvl~~~~~~~~~-~~~~~~l~~~~~v~~~~~~----------------~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~ 65 (294)
||||++.+. ..+ ....+.|.+.+++...+.. + ..+.+.+.+.++++|+++......+...
T Consensus 16 ~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~d~~~l~~~~~~~DvVi~~~p~~~~~~ 92 (365)
T 3abi_A 16 HMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPLKVD-ASNFDKLVEVMKEFELVIGALPGFLGFK 92 (365)
T ss_dssp CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTTSEEEECC-TTCHHHHHHHHTTCSEEEECCCGGGHHH
T ss_pred ccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhccCCcEEEe-cCCHHHHHHHHhCCCEEEEecCCcccch
Confidence 678888773 211 3344556655655443110 0 1356677777889999887644444444
Q ss_pred HHhhcCCCceEEEeccccCcccCh-----------hhHhhCCcEEeecCCCCh
Q psy5259 66 ALDESGENLKVISTFSVGHDHLHL-----------DQIKSRGIRVGTVGPVSS 107 (294)
Q Consensus 66 ~l~~~~~~lk~i~~~~~G~d~id~-----------~~~~~~gI~v~~~~~~~~ 107 (294)
+.+.+ ...|++++|+ +.++++|+.+-+.-|..+
T Consensus 93 v~~~~---------~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G~~P 136 (365)
T 3abi_A 93 SIKAA---------IKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFAP 136 (365)
T ss_dssp HHHHH---------HHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCBTTT
T ss_pred HHHHH---------HhcCcceEeeeccchhhhhhhhhhccCCceeeecCCCCC
Confidence 44432 2233444332 234677877776655443
No 190
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=36.04 E-value=28 Score=30.46 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.1
Q ss_pred CHHHHhccCCEEEEecCCCc
Q psy5259 220 PLDTLCAQSDFIFVTCALTK 239 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~ 239 (294)
++.+.++++|+|+.++|...
T Consensus 197 ~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 197 EAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp HHHHTGGGCSEEEECSCTTC
T ss_pred HHHhhhccCCEEEECCCCCC
Confidence 35567789999999999764
No 191
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=35.75 E-value=32 Score=30.79 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=18.3
Q ss_pred ccCHHHHhc--cCCEEEEecCCCc
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALTK 239 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t~ 239 (294)
+.+++++++ +.|+|+++.|-..
T Consensus 54 ~~~~~~ll~~~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 54 YESYEAVLADEKVDAVLIATPNDS 77 (359)
T ss_dssp CSCHHHHHHCTTCCEEEECSCGGG
T ss_pred eCCHHHHhcCCCCCEEEEcCCcHH
Confidence 468999998 7899999999543
No 192
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=35.69 E-value=3.4e+02 Score=26.93 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=69.6
Q ss_pred CCeEEEecCCCCCCchhHH--------Hhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCCCCCC-----C--H
Q psy5259 3 KPKLLLTRNDYPRVSPAYD--------ILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNPHQKV-----D--K 64 (294)
Q Consensus 3 k~kvl~~~~~~~~~~~~~~--------~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~~~~~-----~--~ 64 (294)
++||++....-...+.... .|+. +|+|+.... ..+.|++++... ++|++..+..-.- + +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGv---dVPpEeIVeAA~EedADVVGLSsLLTt~dihL~~Mk 678 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGT---SVPVEKLVDAAIELKADAILASTIISHDDIHYKNMK 678 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCS---SBCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCC---CCCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHH
Confidence 6788876432222243332 3455 799998765 578999998774 6898887632111 1 2
Q ss_pred ---HHHhhcCC--CceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHH
Q psy5259 65 ---EALDESGE--NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120 (294)
Q Consensus 65 ---~~l~~~~~--~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~ 120 (294)
+.|++.+. +++++. -|+- ++-+.+++.|.-....+|..+..+|+..+..+..
T Consensus 679 evIelLrE~GlrDkIkVIV-GGa~---~tqd~AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 679 RIHELAVEKGIRDKIMIGC-GGTQ---VTPEVAVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HHHHHHHHTTCTTTSEEEE-ECTT---CCHHHHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEE-ECCC---CCHHHHHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 44555544 355543 2322 4456778899888888888998888876655544
No 193
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=35.33 E-value=60 Score=27.52 Aligned_cols=63 Identities=21% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCCeEEEecCCCC-------------CC-chhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHH
Q psy5259 2 SKPKLLLTRNDYP-------------RV-SPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEA 66 (294)
Q Consensus 2 ~k~kvl~~~~~~~-------------~~-~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~ 66 (294)
+||.|-++.. .. .+ ....+.+.+ +...+.++.. .+.+ +.+.+.++|+++..+...++.++
T Consensus 3 ~~p~IGi~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~---~~~~-~~~~l~~~DGlil~GG~~v~P~~ 77 (254)
T 3fij_A 3 LKPVIGITGN-RLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPID---DPST-AVQAISLVDGLLLTGGQDITPQL 77 (254)
T ss_dssp CCCEEEEEC-------------------CHHHHHHHHHHTCEEEEECCC---CGGG-HHHHHHTCSEEEECCCSCCCGGG
T ss_pred CCCEEEEeCC-cccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeCC---CchH-HHHHHhhCCEEEECCCCCCChhh
Confidence 5788888762 21 00 235556665 6676666542 2333 55667899999998776777776
Q ss_pred Hhh
Q psy5259 67 LDE 69 (294)
Q Consensus 67 l~~ 69 (294)
+.+
T Consensus 78 yg~ 80 (254)
T 3fij_A 78 YLE 80 (254)
T ss_dssp GTC
T ss_pred cCC
Confidence 654
No 194
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=35.17 E-value=21 Score=32.36 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=16.6
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.+++++++++|+|++++|..
T Consensus 69 ~~l~~ll~~~DvVIn~~P~~ 88 (365)
T 2z2v_A 69 DKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp HHHHHHHTTCSCEEECCCHH
T ss_pred HHHHHHHhCCCEEEECCChh
Confidence 35788999999999998843
No 195
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=34.95 E-value=35 Score=28.47 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=17.6
Q ss_pred ccCHHHHh-ccCCEEEEecCCC
Q psy5259 218 LVPLDTLC-AQSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell-~~sDvV~l~~p~t 238 (294)
+.++++++ .++|+|++++|-.
T Consensus 40 ~~~~~~l~~~~~DvVv~~~~~~ 61 (236)
T 2dc1_A 40 VRGIDEFLQREMDVAVEAASQQ 61 (236)
T ss_dssp ESSHHHHTTSCCSEEEECSCHH
T ss_pred cCCHHHHhcCCCCEEEECCCHH
Confidence 45799999 7999999999943
No 196
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=34.93 E-value=24 Score=33.34 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=35.7
Q ss_pred CHHHHhccCCEEEEecCCCcccc-cc-------cccccc---cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALTKDTE-QL-------IGRKQF---RGGLLDQEALVEFLRDKKIGGAGLDVMIP 279 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~~T~-~l-------i~~~~~---RG~lvde~aL~~aL~~g~i~ga~LDV~~~ 279 (294)
+++ .+++||+|+.++|-..+.+ .+ +....+ -.+.+.-..+.+++.. +-..+++..|.+
T Consensus 124 dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~-p~r~iG~HffnP 192 (460)
T 3k6j_A 124 DFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRD-PSNLVGIHFFNP 192 (460)
T ss_dssp CGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSS-GGGEEEEECCSS
T ss_pred CHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccC-CcceEEEEecch
Confidence 454 6889999999999665432 12 222222 3444666677666543 345678887773
No 197
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=34.89 E-value=22 Score=30.49 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=16.7
Q ss_pred cCHHHHhccCCEEEEecCCC
Q psy5259 219 VPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 219 ~~l~ell~~sDvV~l~~p~t 238 (294)
.++.+.++++|+|+++.|..
T Consensus 158 ~~~~~~~~~aDiVInatp~g 177 (253)
T 3u62_A 158 DQLDEVVKKAKSLFNTTSVG 177 (253)
T ss_dssp GGHHHHHHTCSEEEECSSTT
T ss_pred HHHHhhhcCCCEEEECCCCC
Confidence 45778889999999999964
No 198
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=34.81 E-value=70 Score=27.79 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=16.3
Q ss_pred CHHHHhccCCEEEEecCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t 238 (294)
++++.++++|+|+.+.|..
T Consensus 187 ~l~~~l~~~DiVInaTp~G 205 (283)
T 3jyo_A 187 GIEDVIAAADGVVNATPMG 205 (283)
T ss_dssp THHHHHHHSSEEEECSSTT
T ss_pred HHHHHHhcCCEEEECCCCC
Confidence 6778889999999999964
No 199
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=34.73 E-value=29 Score=31.06 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=17.1
Q ss_pred ccCHHHHhccC--CEEEEecCC
Q psy5259 218 LVPLDTLCAQS--DFIFVTCAL 237 (294)
Q Consensus 218 ~~~l~ell~~s--DvV~l~~p~ 237 (294)
+.++++++++. |+|+++.|-
T Consensus 57 ~~~~~~ll~~~~vD~V~i~tp~ 78 (359)
T 3m2t_A 57 LDNVPAMLNQVPLDAVVMAGPP 78 (359)
T ss_dssp ESSHHHHHHHSCCSEEEECSCH
T ss_pred cCCHHHHhcCCCCCEEEEcCCc
Confidence 56899999866 999999993
No 200
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=32.72 E-value=6.3 Score=37.67 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCceEEE-eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhH
Q psy5259 72 ENLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNI 115 (294)
Q Consensus 72 ~~lk~i~-~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~ 115 (294)
++++.+. ..++|+|++ ..+.++||.+.+++++++ +|++..+
T Consensus 209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~~ 250 (494)
T 3ce6_A 209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSKF 250 (494)
T ss_dssp HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHTT
T ss_pred cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHHH
Confidence 3566666 789999998 778899999999999999 9999653
No 201
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=32.63 E-value=33 Score=29.48 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHcCCc
Q psy5259 254 LLDQEALVEFLRDKKI 269 (294)
Q Consensus 254 lvde~aL~~aL~~g~i 269 (294)
+.|.+.+++.++.|--
T Consensus 220 v~d~~~~l~~i~~G~~ 235 (249)
T 3npg_A 220 VTNIEKALVKLKLGSF 235 (249)
T ss_dssp ESCHHHHHHHHHHTCH
T ss_pred ecCHHHHHHHHHcccc
Confidence 4599999999998853
No 202
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=31.75 E-value=36 Score=29.94 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=18.0
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|+++.|-.
T Consensus 55 ~~~~~~ll~~~~vD~V~i~tp~~ 77 (334)
T 3ohs_X 55 YGSYEELAKDPNVEVAYVGTQHP 77 (334)
T ss_dssp ESSHHHHHHCTTCCEEEECCCGG
T ss_pred cCCHHHHhcCCCCCEEEECCCcH
Confidence 568999998 599999999944
No 203
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=31.33 E-value=28 Score=30.81 Aligned_cols=22 Identities=27% Similarity=0.146 Sum_probs=18.4
Q ss_pred ccCHHHHhcc--CCEEEEecCCCc
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALTK 239 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t~ 239 (294)
+.++++++++ .|+|+++.|-..
T Consensus 55 ~~~~~~ll~~~~~D~V~i~tp~~~ 78 (344)
T 3mz0_A 55 YPNDDSLLADENVDAVLVTSWGPA 78 (344)
T ss_dssp ESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eCCHHHHhcCCCCCEEEECCCchh
Confidence 5689999987 899999999543
No 204
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=31.16 E-value=34 Score=31.95 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.7
Q ss_pred cCcCCCEEEEEcc
Q psy5259 200 IGLNGSTVGIVGT 212 (294)
Q Consensus 200 ~~l~gktvgIiG~ 212 (294)
..+.|++|+|+|+
T Consensus 314 ~~~~~~~v~vlGl 326 (450)
T 3gg2_A 314 GNVQGRCVAIWGL 326 (450)
T ss_dssp TCCTTCEEEEECC
T ss_pred ccCCCCEEEEEee
Confidence 4689999999999
No 205
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=30.79 E-value=30 Score=31.54 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=19.6
Q ss_pred cCCCc-ccCHHHHhccCCEEEEecCCC
Q psy5259 213 ELGAQ-LVPLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 213 ~~~~~-~~~l~ell~~sDvV~l~~p~t 238 (294)
.+++. +.+++++++..|+|+++.|-.
T Consensus 51 ~~gv~~~~~~~~l~~~~D~v~i~~p~~ 77 (372)
T 4gmf_A 51 AFGIPLYTSPEQITGMPDIACIVVRST 77 (372)
T ss_dssp HTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred HhCCCEECCHHHHhcCCCEEEEECCCc
Confidence 34443 468999999999999999843
No 206
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=30.76 E-value=42 Score=30.00 Aligned_cols=33 Identities=6% Similarity=0.123 Sum_probs=23.7
Q ss_pred ccCHHHHhcc--CCEEEEecCCCc----------ccccccccccc
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
+.+++++++. .|+|+++.|-.. .-+|++-++=+
T Consensus 77 ~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPl 121 (361)
T 3u3x_A 77 IATAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPG 121 (361)
T ss_dssp ESCHHHHHTCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCS
T ss_pred cCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCC
Confidence 5689999986 899999999432 24555555554
No 207
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=30.28 E-value=34 Score=24.48 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCCCeEEEecCCCCCC-chhHHHhhc-cceEEEcCCCCCCCCHHHHHHHc--cCCcEEEeC
Q psy5259 1 MSKPKLLLTRNDYPRV-SPAYDILED-MFDIITYPISEGRMPRDIFIEKL--KGCSALLCN 57 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~-~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l--~~~d~~~~~ 57 (294)
|++++||+.+. -+.. ......|++ ++++..+. +.++..+.+ ...|++++.
T Consensus 1 M~~~~ilivdd-~~~~~~~l~~~L~~~g~~v~~~~------~~~~a~~~l~~~~~dlii~D 54 (127)
T 3i42_A 1 MSLQQALIVED-YQAAAETFKELLEMLGFQADYVM------SGTDALHAMSTRGYDAVFID 54 (127)
T ss_dssp -CCEEEEEECS-CHHHHHHHHHHHHHTTEEEEEES------SHHHHHHHHHHSCCSEEEEE
T ss_pred CCcceEEEEcC-CHHHHHHHHHHHHHcCCCEEEEC------CHHHHHHHHHhcCCCEEEEe
Confidence 88899999985 3311 122233444 57776543 345555555 357888875
No 208
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=30.02 E-value=22 Score=30.52 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=35.0
Q ss_pred ccCHHHHhccCCEEEEecCCCccccccccc--c---cc----------cCcCCCHHHHHHHHHcC
Q psy5259 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGR--K---QF----------RGGLLDQEALVEFLRDK 267 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~~--~---~~----------RG~lvde~aL~~aL~~g 267 (294)
..+++++++++|+|++++|....++.++.. + .+ .|...+.+.|.+.+.+.
T Consensus 49 ~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 113 (295)
T 1yb4_A 49 VETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113 (295)
T ss_dssp CSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 357889999999999999976656655542 1 11 45445567888888764
No 209
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=30.00 E-value=26 Score=32.98 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=34.1
Q ss_pred cCHHHHhcc---CCEEEEecCCCcccccccc-------cccc-----cCcCCCHHHHHHHHHcCCceE
Q psy5259 219 VPLDTLCAQ---SDFIFVTCALTKDTEQLIG-------RKQF-----RGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 219 ~~l~ell~~---sDvV~l~~p~t~~T~~li~-------~~~~-----RG~lvde~aL~~aL~~g~i~g 271 (294)
.+++++++. +|+|++++|..+.++..+. ...+ .|.-.+.+.+.+.+.+..+..
T Consensus 57 ~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~ 124 (478)
T 1pgj_A 57 ETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRF 124 (478)
T ss_dssp SCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEE
T ss_pred CCHHHHHhcccCCCEEEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeE
Confidence 478888874 9999999997766665552 1111 232235567888887654443
No 210
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=29.98 E-value=68 Score=27.53 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=14.1
Q ss_pred HccCCcEEEeCCCCCCCHHHHhhc
Q psy5259 47 KLKGCSALLCNPHQKVDKEALDES 70 (294)
Q Consensus 47 ~l~~~d~~~~~~~~~~~~~~l~~~ 70 (294)
.++++|+++.......-++++++.
T Consensus 60 ~~~~aDvVilav~p~~~~~vl~~l 83 (280)
T 3tri_A 60 GALNADVVVLAVKPHQIKMVCEEL 83 (280)
T ss_dssp HHSSCSEEEECSCGGGHHHHHHHH
T ss_pred HHhcCCeEEEEeCHHHHHHHHHHH
Confidence 346788888764444445555543
No 211
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=29.78 E-value=20 Score=34.13 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=32.5
Q ss_pred cCHHHHhcc---CCEEEEecCCCcccccccc-------cccc-----cCcCCCHHHHHHHHHcCCce
Q psy5259 219 VPLDTLCAQ---SDFIFVTCALTKDTEQLIG-------RKQF-----RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 219 ~~l~ell~~---sDvV~l~~p~t~~T~~li~-------~~~~-----RG~lvde~aL~~aL~~g~i~ 270 (294)
.+++++++. ||+|++++|..+.++..+. +..+ .+.-.+...+.+.+.+..+.
T Consensus 63 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~ 129 (497)
T 2p4q_A 63 TSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL 129 (497)
T ss_dssp SSHHHHHHTSCSSCEEEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhcCCCCCEEEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence 468888877 9999999997766665552 1111 22222345677777764443
No 212
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=29.74 E-value=32 Score=30.55 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=24.1
Q ss_pred ccCHHHHhcc--CCEEEEecCCCc----------ccccccccccc
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
+.+++++|++ -|+|+++.|-.- .-+|++-++=|
T Consensus 83 y~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPl 127 (393)
T 4fb5_A 83 TADWRALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPM 127 (393)
T ss_dssp ESCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCS
T ss_pred cCCHHHHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCC
Confidence 4689999975 699999999433 35566666665
No 213
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=29.17 E-value=32 Score=25.47 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=13.1
Q ss_pred HHHH-hccCCEEEEecCCC
Q psy5259 221 LDTL-CAQSDFIFVTCALT 238 (294)
Q Consensus 221 l~el-l~~sDvV~l~~p~t 238 (294)
++++ +.++|+|+.+.|..
T Consensus 63 l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 63 LLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp HHTTTGGGCSEEEECCCSC
T ss_pred HHhcCCCCCCEEEECCCCc
Confidence 3443 67899999998854
No 214
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=29.03 E-value=2.1e+02 Score=26.75 Aligned_cols=84 Identities=11% Similarity=0.141 Sum_probs=45.5
Q ss_pred CeEEEecCCCCCC--chhHHHhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259 4 PKLLLTRNDYPRV--SPAYDILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNPHQKVDKEALDESGENLKVIS 78 (294)
Q Consensus 4 ~kvl~~~~~~~~~--~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~~~~~~~~~l~~~~~~lk~i~ 78 (294)
.+|++.+ +... ...-+.|.+ +++|...+... + ...+.++ ++.+.+ + .+.+.+..+ . -+|.
T Consensus 23 ~~v~viG--iG~sG~s~~A~~l~~~G~~V~~~D~~~---~--~~~~~l~~~gi~~~~--g---~~~~~~~~~--d-~vV~ 87 (494)
T 4hv4_A 23 RHIHFVG--IGGAGMGGIAEVLANEGYQISGSDLAP---N--SVTQHLTALGAQIYF--H---HRPENVLDA--S-VVVV 87 (494)
T ss_dssp CEEEEET--TTSTTHHHHHHHHHHTTCEEEEECSSC---C--HHHHHHHHTTCEEES--S---CCGGGGTTC--S-EEEE
T ss_pred CEEEEEE--EcHhhHHHHHHHHHhCCCeEEEEECCC---C--HHHHHHHHCCCEEEC--C---CCHHHcCCC--C-EEEE
Confidence 4688877 3311 112334444 78998877642 1 1223333 344322 1 223334321 1 3556
Q ss_pred eccccCcccChhhHhhCCcEEeec
Q psy5259 79 TFSVGHDHLHLDQIKSRGIRVGTV 102 (294)
Q Consensus 79 ~~~~G~d~id~~~~~~~gI~v~~~ 102 (294)
++++..|+-.+..++++||++..-
T Consensus 88 Spgi~~~~p~~~~a~~~gi~v~~~ 111 (494)
T 4hv4_A 88 STAISADNPEIVAAREARIPVIRR 111 (494)
T ss_dssp CTTSCTTCHHHHHHHHTTCCEEEH
T ss_pred CCCCCCCCHHHHHHHHCCCCEEcH
Confidence 777777887778888899887655
No 215
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=28.93 E-value=40 Score=31.13 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=17.8
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|+++.|-.
T Consensus 139 ~~~~~~ll~~~~vD~V~iatp~~ 161 (433)
T 1h6d_A 139 YSNFDKIAKDPKIDAVYIILPNS 161 (433)
T ss_dssp SSSGGGGGGCTTCCEEEECSCGG
T ss_pred cCCHHHHhcCCCCCEEEEcCCch
Confidence 568999997 799999999944
No 216
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=28.72 E-value=39 Score=30.22 Aligned_cols=33 Identities=9% Similarity=0.272 Sum_probs=24.3
Q ss_pred ccCHHHHhc--cCCEEEEecCCCc----------ccccccccccc
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
+.+++++++ +.|+|+++.|-.. .-+|++.++=+
T Consensus 56 ~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPl 100 (364)
T 3e82_A 56 IASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVDKPF 100 (364)
T ss_dssp ESCHHHHHTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCS
T ss_pred ECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCcEEEeCCC
Confidence 468999998 7899999999543 25566666644
No 217
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=28.56 E-value=1.3e+02 Score=27.05 Aligned_cols=94 Identities=12% Similarity=0.218 Sum_probs=62.0
Q ss_pred CCHHHHHHHc-cCCcEEEeCCC---CCCCHHHHhhcCCCceEEEeccccCcccCh--hhHhhCCcEEeecCCC----Chh
Q psy5259 39 MPRDIFIEKL-KGCSALLCNPH---QKVDKEALDESGENLKVISTFSVGHDHLHL--DQIKSRGIRVGTVGPV----SSD 108 (294)
Q Consensus 39 ~~~e~~~~~l-~~~d~~~~~~~---~~~~~~~l~~~~~~lk~i~~~~~G~d~id~--~~~~~~gI~v~~~~~~----~~~ 108 (294)
.+++...+.. .+.++++-.+. ..++.+.+.++ |....+. +.+++..+.++.-..+ .++
T Consensus 18 l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~a------------Ga~i~~~~~~~~~~adiil~v~~p~~~~~~~~ 85 (384)
T 1l7d_A 18 ISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAA------------GATIASTAAQALSQADVVWKVQRPMTAEEGTD 85 (384)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHT------------TCEEESSHHHHHSSCSEEEEEECCCCGGGSCC
T ss_pred CCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHC------------CCEEecChhhhhcCCCEEEEecCcccccCCHH
Confidence 4665444332 35677663322 36777777654 3333332 5567788888876665 444
Q ss_pred hhhhhhHHHHHHcc-CcceEEEeeccccccccchhhccCcEEEee
Q psy5259 109 AVAEFNIGLAIAVK-NLKVISTFSVGHDHLHLDQIKSRGIRVGTV 152 (294)
Q Consensus 109 ~vae~~~~~~l~~~-~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~ 152 (294)
.++ .++ .++++.....+.|+.+++.+.++||.+++.
T Consensus 86 ~i~--------~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~ 122 (384)
T 1l7d_A 86 EVA--------LIKEGAVLMCHLGALTNRPVVEALTKRKITAYAM 122 (384)
T ss_dssp GGG--------GSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEG
T ss_pred HHH--------hhccCCEEEEEecccCCHHHHHHHHHCCCEEEEe
Confidence 554 344 688888888888999999999999999973
No 218
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=28.55 E-value=18 Score=34.04 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=33.9
Q ss_pred cCHHHHhcc---CCEEEEecCCCcccccccc-------cccc-----cCcCCCHHHHHHHHHcCCceE
Q psy5259 219 VPLDTLCAQ---SDFIFVTCALTKDTEQLIG-------RKQF-----RGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 219 ~~l~ell~~---sDvV~l~~p~t~~T~~li~-------~~~~-----RG~lvde~aL~~aL~~g~i~g 271 (294)
.+++++++. +|+|++++|....++..+. ...+ .|...+.+.+.+.+.+..+..
T Consensus 57 ~s~~e~v~~l~~aDvVilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~ 124 (474)
T 2iz1_A 57 KTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF 124 (474)
T ss_dssp SSHHHHHHTBCSSCEEEECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEE
T ss_pred CCHHHHHhhccCCCEEEEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeE
Confidence 478888876 9999999998766665543 1111 232235567777777644443
No 219
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=28.15 E-value=2.1e+02 Score=25.21 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=36.0
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+.. ..+ .+.-..|. .+.+|..+... + +++.+.++++|++++.. ...++++++.
T Consensus 166 k~vvVIG~s-~iVG~p~A~lL~~~gAtVtv~hs~----t-~~L~~~~~~ADIVI~Avg~p~~I~~~~vk 228 (301)
T 1a4i_A 166 RHAVVVGRS-KIVGAPMHDLLLWNNATVTTCHSK----T-AHLDEEVNKGDILVVATGQPEMVKGEWIK 228 (301)
T ss_dssp CEEEEECCC-TTTHHHHHHHHHHTTCEEEEECTT----C-SSHHHHHTTCSEEEECCCCTTCBCGGGSC
T ss_pred CEEEEECCC-chHHHHHHHHHHhCCCeEEEEECC----c-ccHHHHhccCCEEEECCCCcccCCHHHcC
Confidence 567787742 111 33333333 47888887643 2 45677889999999762 2356777764
No 220
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=28.11 E-value=26 Score=33.03 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=33.4
Q ss_pred cCHHHHhc---cCCEEEEecCCCcccccccc-------cccc-----cCcCCCHHHHHHHHHcCCceE
Q psy5259 219 VPLDTLCA---QSDFIFVTCALTKDTEQLIG-------RKQF-----RGGLLDQEALVEFLRDKKIGG 271 (294)
Q Consensus 219 ~~l~ell~---~sDvV~l~~p~t~~T~~li~-------~~~~-----RG~lvde~aL~~aL~~g~i~g 271 (294)
.+++++++ .+|+|++++|..+.++..+. ...+ .|.-.+...+.+.+.+..+..
T Consensus 55 ~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~ 122 (482)
T 2pgd_A 55 HSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF 122 (482)
T ss_dssp SSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHhhccCCCEEEEeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence 46888874 89999999997766666553 1111 232224456777777654443
No 221
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=28.01 E-value=1.4e+02 Score=26.20 Aligned_cols=59 Identities=7% Similarity=-0.072 Sum_probs=35.1
Q ss_pred CeEEEecCCCCCC-chhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+.. ..+ .+....|.. +.+|..+... + +++.+.++++|++++.. ...++++++.
T Consensus 160 k~vvVIG~s-~iVG~p~A~lL~~~gAtVtv~hs~----t-~~L~~~~~~ADIVI~Avg~p~lI~~~~vk 222 (288)
T 1b0a_A 160 LNAVVIGAS-NIVGRPMSMELLLAGCTTTVTHRF----T-KNLRHHVENADLLIVAVGKPGFIPGDWIK 222 (288)
T ss_dssp CEEEEECCC-TTTHHHHHHHHHTTTCEEEEECSS----C-SCHHHHHHHCSEEEECSCCTTCBCTTTSC
T ss_pred CEEEEECCC-hHHHHHHHHHHHHCCCeEEEEeCC----c-hhHHHHhccCCEEEECCCCcCcCCHHHcC
Confidence 467777742 111 333344443 7888887653 2 35667788999999762 2245666663
No 222
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=27.86 E-value=32 Score=29.91 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=17.6
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|+++.|-.
T Consensus 54 ~~~~~ell~~~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 54 QISLEDALRSQEIDVAYICSESS 76 (294)
T ss_dssp BCCHHHHHHCSSEEEEEECSCGG
T ss_pred CCCHHHHhcCCCCCEEEEeCCcH
Confidence 568999997 689999999943
No 223
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=27.64 E-value=49 Score=29.34 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=24.5
Q ss_pred ccCHHHHhcc--CCEEEEecCCCc----------ccccccccccc
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
+.+++++++. .|+|+++.|-.. .-+|++.++-+
T Consensus 56 ~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPl 100 (352)
T 3kux_A 56 VSDPQMLFNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPF 100 (352)
T ss_dssp ESCHHHHHHCSSCCEEEECSCTTTHHHHHHHHHHTTCEEEECSSC
T ss_pred ECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCcEEEECCC
Confidence 4689999986 899999999554 24566666555
No 224
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=27.36 E-value=37 Score=28.00 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=14.3
Q ss_pred CHHHHhccCCEEEEecCC
Q psy5259 220 PLDTLCAQSDFIFVTCAL 237 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~ 237 (294)
+..+.++++|+|++++|.
T Consensus 74 ~~~~~~~~aDvVilavp~ 91 (220)
T 4huj_A 74 VELKDALQADVVILAVPY 91 (220)
T ss_dssp CCHHHHTTSSEEEEESCG
T ss_pred ChHHHHhcCCEEEEeCCh
Confidence 344567899999999994
No 225
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=27.09 E-value=31 Score=30.13 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=14.8
Q ss_pred CHHHHhccCCEEEEecCCCc
Q psy5259 220 PLDTLCAQSDFIFVTCALTK 239 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~ 239 (294)
+++++.+++|+|+.+.|..-
T Consensus 180 ~~~~l~~~aDiIInaTp~gm 199 (281)
T 3o8q_A 180 AFEQLKQSYDVIINSTSASL 199 (281)
T ss_dssp EGGGCCSCEEEEEECSCCCC
T ss_pred eHHHhcCCCCEEEEcCcCCC
Confidence 34455578999999999764
No 226
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=27.02 E-value=37 Score=30.27 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=17.4
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|+++.|-.
T Consensus 60 ~~~~~~ll~~~~~D~V~i~tp~~ 82 (362)
T 1ydw_A 60 HGSYESLLEDPEIDALYVPLPTS 82 (362)
T ss_dssp ESSHHHHHHCTTCCEEEECCCGG
T ss_pred eCCHHHHhcCCCCCEEEEcCChH
Confidence 468999997 599999999943
No 227
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=26.98 E-value=39 Score=30.16 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=24.7
Q ss_pred ccCHHHHhc--cCCEEEEecCCCc----------ccccccccccc
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
+.+++++++ +.|+|+++.|-.. .-+|++.++=+
T Consensus 54 ~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPl 98 (358)
T 3gdo_A 54 VHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPM 98 (358)
T ss_dssp ESSTHHHHTCTTCCEEEECSCTTTHHHHHHHHHHTTCEEEEESSC
T ss_pred ECCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEecCC
Confidence 468999998 6899999999653 34566666654
No 228
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=26.74 E-value=41 Score=29.24 Aligned_cols=21 Identities=0% Similarity=0.096 Sum_probs=17.3
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ ++|+|++++|-.
T Consensus 58 ~~~~~~~l~~~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 58 ESDWRSVVSAPEVEAVIIATPPA 80 (315)
T ss_dssp ESSTHHHHTCTTCCEEEEESCGG
T ss_pred cCCHHHHhhCCCCCEEEEeCChH
Confidence 457899996 799999999943
No 229
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=26.62 E-value=40 Score=29.88 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=23.3
Q ss_pred ccCHHHHhcc--CCEEEEecCCCc----------ccccccccccc
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
+.+++++|+. -|+|+++.|-.- .-+|++-++=|
T Consensus 64 ~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPl 108 (390)
T 4h3v_A 64 ETDWRTLLERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPL 108 (390)
T ss_dssp ESCHHHHTTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSS
T ss_pred cCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCCceeecCc
Confidence 4689999965 799999999433 24555555555
No 230
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=26.57 E-value=1.7e+02 Score=25.82 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=35.6
Q ss_pred CeEEEecCCCCCC--chhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeC--CCCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV--SPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCN--PHQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~--~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~--~~~~~~~~~l~ 68 (294)
.++++.+. -..+ +-..-.++++..|..+... | ..+.+.++++|++++. ....++.+++.
T Consensus 180 k~vvViGR-S~iVGkPla~LL~~~~ATVTi~Hs~----T-~dl~~~~~~ADIvV~A~G~p~~i~~d~vk 242 (303)
T 4b4u_A 180 KHAVVVGR-SAILGKPMAMMLLQANATVTICHSR----T-QNLPELVKQADIIVGAVGKAELIQKDWIK 242 (303)
T ss_dssp CEEEEECC-CTTTHHHHHHHHHHTTCEEEEECTT----C-SSHHHHHHTCSEEEECSCSTTCBCGGGSC
T ss_pred CEEEEEec-cccccchHHHHHHhcCCEEEEecCC----C-CCHHHHhhcCCeEEeccCCCCcccccccc
Confidence 35666664 2222 2223344558899888764 2 2355677899999975 23456777775
No 231
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=26.54 E-value=54 Score=30.55 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=14.1
Q ss_pred CHHHHhccCCEEEEecCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t 238 (294)
+.++.++.+|+|+++....
T Consensus 401 ~~~~~~~~ad~~vi~t~~~ 419 (467)
T 2q3e_A 401 DPYEACDGAHAVVICTEWD 419 (467)
T ss_dssp SHHHHHTTCSEEEECSCCG
T ss_pred CHHHHHhCCcEEEEecCCh
Confidence 4667778888888887753
No 232
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=26.47 E-value=42 Score=30.02 Aligned_cols=19 Identities=5% Similarity=-0.031 Sum_probs=16.6
Q ss_pred CHHHHhccCCEEEEecCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t 238 (294)
+|.++++++|+|+.++|..
T Consensus 70 ~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 70 KLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp HHHHHHTTCSEEEECCCGG
T ss_pred HHHHHHhCCCEEEEecCCc
Confidence 5888999999999999954
No 233
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=26.33 E-value=1.3e+02 Score=25.91 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=39.6
Q ss_pred CCCCeEEEecCCCCCCchhHHHh--------hc-cceEEEcCCCCCCCCHHH---HHH-Hcc---CCcEEEeCCCCCCCH
Q psy5259 1 MSKPKLLLTRNDYPRVSPAYDIL--------ED-MFDIITYPISEGRMPRDI---FIE-KLK---GCSALLCNPHQKVDK 64 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~~~~~~l--------~~-~~~v~~~~~~~~~~~~e~---~~~-~l~---~~d~~~~~~~~~~~~ 64 (294)
|.+++|-+.-|.... .+.+..+ ++ ++++..+... .+.+. .++ .+. ++|++++.+......
T Consensus 1 ~~~~~Ig~i~p~~~~-~~f~~~~~~g~~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~ 76 (350)
T 3h75_A 1 MSLTSVVFLNPGNST-ETFWVSYSQFMQAAARDLGLDLRILYAE---RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAP 76 (350)
T ss_dssp --CCEEEEEECSCTT-CHHHHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHH
T ss_pred CCCCEEEEECCCCCC-ChHHHHHHHHHHHHHHHcCCeEEEEECC---CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHH
Confidence 778888887765541 1333322 22 5777776543 23333 222 233 899999875334445
Q ss_pred HHHhhc-CCCceEEEe
Q psy5259 65 EALDES-GENLKVIST 79 (294)
Q Consensus 65 ~~l~~~-~~~lk~i~~ 79 (294)
+.++.+ ..++.+|..
T Consensus 77 ~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 77 QILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHTTSCCEEEEE
T ss_pred HHHHHHHhCCCcEEEE
Confidence 666554 245666653
No 234
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=26.14 E-value=2.9e+02 Score=24.06 Aligned_cols=59 Identities=7% Similarity=0.036 Sum_probs=35.3
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+. -..+ .+.-..|. .+++|..+... + +.+.+.++++|+++... ...++++++.
T Consensus 161 k~vvVvGr-s~iVG~p~A~lL~~~gAtVtv~h~~----t-~~L~~~~~~ADIVI~Avg~p~~I~~~~vk 223 (285)
T 3p2o_A 161 KDAVIIGA-SNIVGRPMATMLLNAGATVSVCHIK----T-KDLSLYTRQADLIIVAAGCVNLLRSDMVK 223 (285)
T ss_dssp CEEEEECC-CTTTHHHHHHHHHHTTCEEEEECTT----C-SCHHHHHTTCSEEEECSSCTTCBCGGGSC
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCC----c-hhHHHHhhcCCEEEECCCCCCcCCHHHcC
Confidence 46777773 1111 33334444 47888887653 2 34667789999999762 2346677664
No 235
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=25.34 E-value=45 Score=29.54 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.8
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|+++.|-.
T Consensus 64 ~~~~~~ll~~~~~D~V~i~tp~~ 86 (354)
T 3q2i_A 64 HASLTDMLAQTDADIVILTTPSG 86 (354)
T ss_dssp ESCHHHHHHHCCCSEEEECSCGG
T ss_pred eCCHHHHhcCCCCCEEEECCCcH
Confidence 458999997 799999999954
No 236
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=25.31 E-value=66 Score=28.13 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=17.7
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|+++.|-.
T Consensus 55 ~~~~~~ll~~~~~D~V~i~tp~~ 77 (336)
T 2p2s_A 55 AASAEQLITDASIDLIACAVIPC 77 (336)
T ss_dssp CSCHHHHHTCTTCCEEEECSCGG
T ss_pred cCCHHHHhhCCCCCEEEEeCChh
Confidence 568999997 589999999944
No 237
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=25.10 E-value=96 Score=26.80 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=28.8
Q ss_pred ccCCEEEEecCCCcccccccccccccCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259 226 AQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMIP 279 (294)
Q Consensus 226 ~~sDvV~l~~p~t~~T~~li~~~~~RG~lvde~aL~~aL~~g~i~ga~LDV~~~ 279 (294)
+++|+|+.+.|..-... ..++.+-|.+.++.+. ...|+.++
T Consensus 171 ~~~DiVInaTp~Gm~~~----------~~l~~~~l~~~l~~~~---~v~D~vY~ 211 (269)
T 3phh_A 171 SAFDLIINATSASLHNE----------LPLNKEVLKGYFKEGK---LAYDLAYG 211 (269)
T ss_dssp SCCSEEEECCTTCCCCS----------CSSCHHHHHHHHHHCS---EEEESCCS
T ss_pred ccCCEEEEcccCCCCCC----------CCCChHHHHhhCCCCC---EEEEeCCC
Confidence 37999999999764432 2367776666777764 46898887
No 238
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=25.08 E-value=57 Score=30.54 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.7
Q ss_pred CHHHHhccCCEEEEecCCCc
Q psy5259 220 PLDTLCAQSDFIFVTCALTK 239 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~ 239 (294)
+.++.++.||++++++| ||
T Consensus 90 ~~~~ai~~ad~~~I~Vp-TP 108 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVG-TP 108 (444)
T ss_dssp SHHHHHHTSSEEEECCC-CC
T ss_pred CHHHHHhcCCceEEEec-CC
Confidence 56777889999999998 44
No 239
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=25.07 E-value=38 Score=30.58 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=17.8
Q ss_pred ccCHHHHhcc--CCEEEEecCCC
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t 238 (294)
+.+++++++. .|+|+++.|-.
T Consensus 53 ~~~~~ell~~~~vD~V~i~tp~~ 75 (387)
T 3moi_A 53 FATLAEMMQHVQMDAVYIASPHQ 75 (387)
T ss_dssp ESSHHHHHHHSCCSEEEECSCGG
T ss_pred ECCHHHHHcCCCCCEEEEcCCcH
Confidence 5689999985 99999999944
No 240
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=24.63 E-value=63 Score=28.09 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=17.5
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|++++|-.
T Consensus 51 ~~~~~~~l~~~~~D~V~i~tp~~ 73 (332)
T 2glx_A 51 VTSVEELVGDPDVDAVYVSTTNE 73 (332)
T ss_dssp BSCHHHHHTCTTCCEEEECSCGG
T ss_pred cCCHHHHhcCCCCCEEEEeCChh
Confidence 568999997 499999999943
No 241
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=24.40 E-value=3.4e+02 Score=23.79 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=12.7
Q ss_pred ccCHHHHhccCCEEEEe
Q psy5259 218 LVPLDTLCAQSDFIFVT 234 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~ 234 (294)
..+++|.++.+|||..-
T Consensus 194 ~~d~~eav~~aDvvyt~ 210 (304)
T 3r7f_A 194 YVSMDEAVESSDVVMLL 210 (304)
T ss_dssp ECCHHHHHHHCSEEEEC
T ss_pred cCCHHHHhCCCCEEEec
Confidence 35788888888888764
No 242
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=24.26 E-value=2.3e+02 Score=24.76 Aligned_cols=59 Identities=8% Similarity=-0.036 Sum_probs=34.7
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+. -..+ .+.-..|. .+.+|..+... | ..+.+.++++|+++... ...++++++.
T Consensus 162 k~vvVvGr-s~iVG~plA~lL~~~gAtVtv~hs~----T-~~L~~~~~~ADIVI~Avg~p~~I~~~~vk 224 (286)
T 4a5o_A 162 MDAVVVGA-SNIVGRPMALELLLGGCTVTVTHRF----T-RDLADHVSRADLVVVAAGKPGLVKGEWIK 224 (286)
T ss_dssp CEEEEECT-TSTTHHHHHHHHHHTTCEEEEECTT----C-SCHHHHHHTCSEEEECCCCTTCBCGGGSC
T ss_pred CEEEEECC-CchhHHHHHHHHHHCCCeEEEEeCC----C-cCHHHHhccCCEEEECCCCCCCCCHHHcC
Confidence 46777773 1111 33333444 47888887653 2 24556788999999762 2346666664
No 243
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=24.00 E-value=56 Score=28.82 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=37.8
Q ss_pred ccCHHHHhcc---CCEEEEecCCCc----------ccccccccccc--------------------------cCcCCCHH
Q psy5259 218 LVPLDTLCAQ---SDFIFVTCALTK----------DTEQLIGRKQF--------------------------RGGLLDQE 258 (294)
Q Consensus 218 ~~~l~ell~~---sDvV~l~~p~t~----------~T~~li~~~~~--------------------------RG~lvde~ 258 (294)
+.+++++++. .|+|+++.|-.. .-+|++-++=+ +--.=...
T Consensus 69 ~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~ 148 (330)
T 4ew6_A 69 YTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSRYAPAVE 148 (330)
T ss_dssp ESSHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSTTHH
T ss_pred cCCHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEehhhccHHHH
Confidence 4589999976 899999999332 24566655544 12223467
Q ss_pred HHHHHHHcCCceEEE
Q psy5259 259 ALVEFLRDKKIGGAG 273 (294)
Q Consensus 259 aL~~aL~~g~i~ga~ 273 (294)
.+.+.+++|.|...-
T Consensus 149 ~~k~~i~~g~iG~v~ 163 (330)
T 4ew6_A 149 AAKAFLASTTIKSVH 163 (330)
T ss_dssp HHHHHHHSSCEEEEE
T ss_pred HHHHHHhcCCceEEE
Confidence 788888888886543
No 244
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=23.02 E-value=76 Score=27.74 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=17.4
Q ss_pred ccCHHHHhc--cCCEEEEecCCC
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t 238 (294)
+.+++++++ +.|+|+++.|-.
T Consensus 60 ~~~~~~~l~~~~~D~V~i~tp~~ 82 (346)
T 3cea_A 60 YTNYKDMIDTENIDAIFIVAPTP 82 (346)
T ss_dssp ESCHHHHHTTSCCSEEEECSCGG
T ss_pred cCCHHHHhcCCCCCEEEEeCChH
Confidence 458999997 699999999943
No 245
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=22.99 E-value=42 Score=31.57 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=14.9
Q ss_pred CHHHHhccCCEEEEecCCC
Q psy5259 220 PLDTLCAQSDFIFVTCALT 238 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t 238 (294)
++++.++.||+|+++..-.
T Consensus 398 ~~~~~~~~ad~~vi~t~~~ 416 (478)
T 2y0c_A 398 DEAQAARDADALVIVTEWK 416 (478)
T ss_dssp SHHHHTTTCSEEEECSCCG
T ss_pred CHHHHHhCCCEEEEecCCh
Confidence 4567788899999988764
No 246
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=22.95 E-value=52 Score=25.23 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=31.4
Q ss_pred ccCHHHHhccCCEEEEecCCCccccccccc------ccc---cCcCCCHHHHHHHHHcCCce
Q psy5259 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGR------KQF---RGGLLDQEALVEFLRDKKIG 270 (294)
Q Consensus 218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~~------~~~---RG~lvde~aL~~aL~~g~i~ 270 (294)
+.+++|+....|++++++| .+....++.+ ..+ -|. . .+.+.+..++..+.
T Consensus 60 ~~s~~el~~~vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~-~-~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 60 YRSVRELPKDVDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGA-E-SEEIRRFLEKAGVE 118 (138)
T ss_dssp BSSGGGSCTTCCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTS-C-CHHHHHHHHHHTCE
T ss_pred cCCHHHhCCCCCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCcc-H-HHHHHHHHHHCCCE
Confidence 3479999999999999999 4555554421 111 222 2 45666666665554
No 247
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=22.93 E-value=38 Score=30.24 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.9
Q ss_pred ccCHHHHhcc--CCEEEEecCCC
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALT 238 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t 238 (294)
+.+++++++. .|+|+++.|-.
T Consensus 54 ~~~~~~ll~~~~vD~V~i~tp~~ 76 (362)
T 3fhl_A 54 VRSFKELTEDPEIDLIVVNTPDN 76 (362)
T ss_dssp ESCSHHHHTCTTCCEEEECSCGG
T ss_pred ECCHHHHhcCCCCCEEEEeCChH
Confidence 4689999987 89999999954
No 248
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=22.69 E-value=62 Score=23.36 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCCCeEEEecCCCCCC-chhHHHhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeC
Q psy5259 1 MSKPKLLLTRNDYPRV-SPAYDILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCN 57 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~-~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~ 57 (294)
|++++||+.+. -+.. ......|++ ++++..+. +.++..+.++ ..|++++.
T Consensus 1 m~~~~ilivdd-~~~~~~~l~~~L~~~g~~v~~~~------~~~~a~~~l~~~~~dlvi~d 54 (140)
T 2qr3_A 1 MSLGTIIIVDD-NKGVLTAVQLLLKNHFSKVITLS------SPVSLSTVLREENPEVVLLD 54 (140)
T ss_dssp -CCCEEEEECS-CHHHHHHHHHHHTTTSSEEEEEC------CHHHHHHHHHHSCEEEEEEE
T ss_pred CCCceEEEEeC-CHHHHHHHHHHHHhCCcEEEEeC------CHHHHHHHHHcCCCCEEEEe
Confidence 88899999985 3311 122234444 57776543 3455555543 47888875
No 249
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.35 E-value=60 Score=23.60 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=27.5
Q ss_pred CCCCeEEEecCCCCCCc-hhHHHhhccceEEEcCCCCCCCCHHHHHHHc--cCCcEEEeC
Q psy5259 1 MSKPKLLLTRNDYPRVS-PAYDILEDMFDIITYPISEGRMPRDIFIEKL--KGCSALLCN 57 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~~-~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l--~~~d~~~~~ 57 (294)
|.+++||+.+. -+... .....|++.+++..+. +.++..+.+ ...|++++.
T Consensus 1 M~~~~iLivdd-~~~~~~~l~~~l~~~~~v~~~~------~~~~a~~~~~~~~~dlvi~D 53 (140)
T 3n53_A 1 MSLKKILIIDQ-QDFSRIELKNFLDSEYLVIESK------NEKEALEQIDHHHPDLVILD 53 (140)
T ss_dssp --CCEEEEECS-CHHHHHHHHHHHTTTSEEEEES------SHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCEEEEEeC-CHHHHHHHHHHHHhcceEEEeC------CHHHHHHHHhcCCCCEEEEe
Confidence 88899999984 33111 2223344456666543 345555544 357888875
No 250
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=22.35 E-value=51 Score=29.28 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=17.3
Q ss_pred cCHHHHhc--cCCEEEEecCCCc
Q psy5259 219 VPLDTLCA--QSDFIFVTCALTK 239 (294)
Q Consensus 219 ~~l~ell~--~sDvV~l~~p~t~ 239 (294)
.+++++++ +.|+|+++.|-..
T Consensus 79 ~~~~~ll~~~~~D~V~i~tp~~~ 101 (350)
T 3rc1_A 79 EGYPALLERDDVDAVYVPLPAVL 101 (350)
T ss_dssp ESHHHHHTCTTCSEEEECCCGGG
T ss_pred CCHHHHhcCCCCCEEEECCCcHH
Confidence 58999997 5899999999543
No 251
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=21.38 E-value=1e+02 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=17.5
Q ss_pred CCCCeEEEecCCCCCC--------chhHHHhhc-cceEEEcC
Q psy5259 1 MSKPKLLLTRNDYPRV--------SPAYDILED-MFDIITYP 33 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~--------~~~~~~l~~-~~~v~~~~ 33 (294)
|++||||+... -|.- +...+.+++ +.+|...+
T Consensus 20 m~~MKiLII~a-HP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 20 FQSMKVLLIYA-HPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp --CCEEEEEEC-CSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 77899998763 4431 133455555 56776644
No 252
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=21.37 E-value=45 Score=29.75 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=17.9
Q ss_pred ccCHHHHhcc--CCEEEEecCCCc
Q psy5259 218 LVPLDTLCAQ--SDFIFVTCALTK 239 (294)
Q Consensus 218 ~~~l~ell~~--sDvV~l~~p~t~ 239 (294)
+.+++++++. .|+|+++.|-..
T Consensus 76 ~~~~~~ll~~~~~D~V~i~tp~~~ 99 (357)
T 3ec7_A 76 YNDYHDLINDKDVEVVIITASNEA 99 (357)
T ss_dssp ESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eCCHHHHhcCCCCCEEEEcCCcHH
Confidence 4689999984 899999999543
No 253
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=21.27 E-value=1.3e+02 Score=25.34 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=37.9
Q ss_pred CCCCeEEEecCCCCC-C------chhHHHhhc-cceEEEcCCCCCCCC-----------HHHHHHHccCCcEEEeCCC--
Q psy5259 1 MSKPKLLLTRNDYPR-V------SPAYDILED-MFDIITYPISEGRMP-----------RDIFIEKLKGCSALLCNPH-- 59 (294)
Q Consensus 1 m~k~kvl~~~~~~~~-~------~~~~~~l~~-~~~v~~~~~~~~~~~-----------~e~~~~~l~~~d~~~~~~~-- 59 (294)
|++||||+....... . +...+.+++ +.++..++..+ .+ -.++.+++.++|+++..++
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~--~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y 109 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSG--LPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER 109 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTT--CCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhc--CCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC
Confidence 456888876632220 0 122233343 56777766542 22 4567788999999997532
Q ss_pred -CCCC---HHHHhhc
Q psy5259 60 -QKVD---KEALDES 70 (294)
Q Consensus 60 -~~~~---~~~l~~~ 70 (294)
..++ +.+|+..
T Consensus 110 n~sipa~LKn~iD~l 124 (247)
T 2q62_A 110 HGAMTGIMKAQIDWI 124 (247)
T ss_dssp SSSCCHHHHHHHHTS
T ss_pred CCCccHHHHHHHHHh
Confidence 2334 4556554
No 254
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=21.15 E-value=2.8e+02 Score=21.86 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=23.9
Q ss_pred CeEEEecCCCCCCchh-HHHhhc-cceEEEcCCCCCCCCHHHHHHHcc
Q psy5259 4 PKLLLTRNDYPRVSPA-YDILED-MFDIITYPISEGRMPRDIFIEKLK 49 (294)
Q Consensus 4 ~kvl~~~~~~~~~~~~-~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~ 49 (294)
|+|++.+ ++..+... .+.|++ +++++.++.. .+.+++.+.+.
T Consensus 1 ~~i~iiD-n~~s~~~~i~~~l~~~G~~~~v~~~~---~~~~~i~~~l~ 44 (192)
T 1i1q_B 1 ADILLLD-NIDSFTWNLADQLRTNGHNVVIYRNH---IPAQTLIDRLA 44 (192)
T ss_dssp CEEEEEE-CSCSSHHHHHHHHHHTTCEEEEEETT---SCSHHHHHHHT
T ss_pred CcEEEEE-CCccHHHHHHHHHHHCCCeEEEEECC---CCHHHHHHHhh
Confidence 5788888 56644222 455555 5676666542 34455655544
No 255
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=21.07 E-value=43 Score=24.95 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=28.3
Q ss_pred CCCCeEEEecCCCCCC-chhHHHhhccceEEEcCCCCCCCCHHHHHHHcc---CCcEEEeC
Q psy5259 1 MSKPKLLLTRNDYPRV-SPAYDILEDMFDIITYPISEGRMPRDIFIEKLK---GCSALLCN 57 (294)
Q Consensus 1 m~k~kvl~~~~~~~~~-~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~---~~d~~~~~ 57 (294)
|++++||+.+. -+.. ......|+.++++..+. +.++..+.++ .+|++++.
T Consensus 2 ~~~~~ILivdd-~~~~~~~l~~~L~~~~~v~~~~------~~~~a~~~l~~~~~~dlvi~D 55 (151)
T 3kcn_A 2 SLNERILLVDD-DYSLLNTLKRNLSFDFEVTTCE------SGPEALACIKKSDPFSVIMVD 55 (151)
T ss_dssp -CCCEEEEECS-CHHHHHHHHHHHTTTSEEEEES------SHHHHHHHHHHSCCCSEEEEE
T ss_pred CCCCeEEEEeC-CHHHHHHHHHHhccCceEEEeC------CHHHHHHHHHcCCCCCEEEEe
Confidence 34678999984 3311 12234445577877653 3455555542 36988875
No 256
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=21.07 E-value=60 Score=29.38 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=23.6
Q ss_pred ccCHHHHhc--cCCEEEEecCCCc----------ccccccccccc
Q psy5259 218 LVPLDTLCA--QSDFIFVTCALTK----------DTEQLIGRKQF 250 (294)
Q Consensus 218 ~~~l~ell~--~sDvV~l~~p~t~----------~T~~li~~~~~ 250 (294)
+.+++++|+ +-|+|+++.|-.- .-+|++-++=+
T Consensus 85 y~d~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~ 129 (412)
T 4gqa_A 85 YGDWRELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPL 129 (412)
T ss_dssp ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCS
T ss_pred ECCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCC
Confidence 468999997 4799999999443 24566666555
No 257
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=21.00 E-value=3.1e+02 Score=24.11 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=34.1
Q ss_pred CeEEEecCCCCCC-chhHHHhh-ccceEEEcCCCCCCCCHHHHH--HHccCCcEEEeCC--CCCCCHHHHh
Q psy5259 4 PKLLLTRNDYPRV-SPAYDILE-DMFDIITYPISEGRMPRDIFI--EKLKGCSALLCNP--HQKVDKEALD 68 (294)
Q Consensus 4 ~kvl~~~~~~~~~-~~~~~~l~-~~~~v~~~~~~~~~~~~e~~~--~~l~~~d~~~~~~--~~~~~~~~l~ 68 (294)
.++++.+. -..+ .+.-..|. .+++|..+... |. .+. +.++++|+++... ...++++++.
T Consensus 166 k~vvVIG~-s~iVG~p~A~lL~~~gAtVtv~~~~----T~-~l~l~~~~~~ADIVI~Avg~p~~I~~~~vk 230 (300)
T 4a26_A 166 KRAVVLGR-SNIVGAPVAALLMKENATVTIVHSG----TS-TEDMIDYLRTADIVIAAMGQPGYVKGEWIK 230 (300)
T ss_dssp CEEEEECC-CTTTHHHHHHHHHHTTCEEEEECTT----SC-HHHHHHHHHTCSEEEECSCCTTCBCGGGSC
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCC----CC-CchhhhhhccCCEEEECCCCCCCCcHHhcC
Confidence 46777773 1111 33333444 47888887653 22 344 7889999999762 2245666653
No 258
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=20.28 E-value=78 Score=28.59 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=15.9
Q ss_pred CHHHHhccCCEEEEecCCCc
Q psy5259 220 PLDTLCAQSDFIFVTCALTK 239 (294)
Q Consensus 220 ~l~ell~~sDvV~l~~p~t~ 239 (294)
+.+++++++|+|++++|...
T Consensus 71 ~~~~~~~~~Dvvf~alp~~~ 90 (351)
T 1vkn_A 71 DPEKVSKNCDVLFTALPAGA 90 (351)
T ss_dssp CHHHHHHHCSEEEECCSTTH
T ss_pred CHHHhhcCCCEEEECCCcHH
Confidence 45666788999999999553
Done!