RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5259
(294 letters)
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 211 bits (540), Expect = 4e-67
Identities = 99/342 (28%), Positives = 128/342 (37%), Gaps = 105/342 (30%)
Query: 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDI-ITYPISEGRMPRDIFIEKLKGCSALLCNPH 59
+ K+ +TR L D + S+ +P + G LLC
Sbjct: 6 VRLMKVFVTRRIPA---EGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLS 62
Query: 60 QKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAI 119
VDK LD +G NLKVIST SVG DHL LD+IK RGIR
Sbjct: 63 DHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIR--------------------- 101
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
VG+ T V +D AE + L + RR +
Sbjct: 102 ------------VGY----------------TPD-VLTDTTAELAVSLLLTTCRRLPEAI 132
Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
+ +G W T + G L STVGI+G
Sbjct: 133 EEVKNGGW----TSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 188
Query: 212 ------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RG 252
E A+ V L AQSDFI V C+LT TE L + F RG
Sbjct: 189 PRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRG 248
Query: 253 GLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
+++Q+ L + L KI AGLDV PEP+P +HPL+ L NC
Sbjct: 249 DVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 200 bits (511), Expect = 7e-63
Identities = 80/339 (23%), Positives = 136/339 (40%), Gaps = 104/339 (30%)
Query: 3 KPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
KPK+ +TR + +LED F++ + E +PR+I ++K+K AL+ ++
Sbjct: 2 KPKVFITR----EIPEVGIKMLEDEFEVEVWG-DEKEIPREILLKKVKEVDALVTMLSER 56
Query: 62 VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
+DKE +
Sbjct: 57 IDKEVFE---------------------------------------------------NA 65
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
L++++ ++VG+D++ +++ RGI V V +DA A+ L +A +R +G
Sbjct: 66 PKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRF 125
Query: 182 IASGEWALKQTQTVISDIIG--LNGSTVGIVG---------------------------- 211
+ SGEW + +G + G T+GI+G
Sbjct: 126 VRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE 185
Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
EL A+ PL+ L +SDF+ + LT++T LI ++ RG ++
Sbjct: 186 EVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVV 245
Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
D ALV+ L++ I GAGLDV EP + L +LDN
Sbjct: 246 DTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNV 283
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 195 bits (497), Expect = 6e-61
Identities = 82/331 (24%), Positives = 128/331 (38%), Gaps = 101/331 (30%)
Query: 5 KLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDK 64
++L+TR P A D L + + +P+ +++++G L+ ++D
Sbjct: 2 RVLVTRT-LPG--KALDRLRERGLEVEVH-RGLFLPKAELLKRVEGAVGLIPTVEDRIDA 57
Query: 65 EALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNL 124
E +D K L
Sbjct: 58 EVMD---------------------------------------------------RAKGL 66
Query: 125 KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIAS 184
KVI+ +SVG DH+ L+ + RGIRV V ++A A+ + L +AV+RR +G
Sbjct: 67 KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARD 126
Query: 185 GEWALKQTQTVISDIIG--LNGSTVGIVG--------------------------TELGA 216
G W ++G L G T+G+VG L
Sbjct: 127 GLW----KAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPY 182
Query: 217 QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEF 263
+ L+ L ++D + + LT +T +L+ R++ RG L+D EALVE
Sbjct: 183 PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEA 242
Query: 264 LRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
LR + GAGLDV PEP+P HPL L N
Sbjct: 243 LR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 192 bits (490), Expect = 9e-60
Identities = 74/338 (21%), Positives = 112/338 (33%), Gaps = 103/338 (30%)
Query: 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
K K+L+T P A + +D+I + + ++ D IE K ALL ++K
Sbjct: 1 KKKILITWP-LPE--AAMARARESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEKC 56
Query: 63 DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
KE +D EN+K IST+S+G DH+ LD K+RG I V
Sbjct: 57 RKEVIDRIPENIKCISTYSIGFDHIDLDACKARG----------------------IKVG 94
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
N + A AE + L + +RR +G I
Sbjct: 95 N---------------------------APH-GVTVATAEIAMLLLLGSARRAGEGEKMI 126
Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVG------------------------------- 211
+ W + ++ L+ T+GI G
Sbjct: 127 RTRSWPGWEPLELVG--EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSD 184
Query: 212 -TELGA-QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
A LD+L + S F + T +T + RG L+D
Sbjct: 185 EASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVD 244
Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
E +V L ++ AG DV EP + L N
Sbjct: 245 NELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNT 281
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 187 bits (476), Expect = 2e-57
Identities = 68/340 (20%), Positives = 101/340 (29%), Gaps = 105/340 (30%)
Query: 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
K L R P L FD+ + + + G L +
Sbjct: 26 HPIQKAFLCRRFTP---AIEAELRQRFDLEVNL-EDTVLTPSGIASRAHGAEVLFVTATE 81
Query: 61 KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
+ E + + LK I+T SVG+DH+ + +S G I
Sbjct: 82 AITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLG----------------------IK 119
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
V + T V SDA AE + L + RR +
Sbjct: 120 VLH---------------------------TPD-VLSDACAEIAMLLVLNACRRGYEADR 151
Query: 181 CIASGEWALKQTQTVISDIIG--LNGSTVGIVG--------------------------- 211
+ SG W + ++G L G +GI G
Sbjct: 152 MVRSGSW----PGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRL 207
Query: 212 ----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGL 254
E LD+L SD + + + + + RG L
Sbjct: 208 SHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDL 267
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
++ +AL+E LR K + AGLDV EP D LDN
Sbjct: 268 INDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNI 306
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 185 bits (471), Expect = 7e-57
Identities = 66/347 (19%), Positives = 112/347 (32%), Gaps = 116/347 (33%)
Query: 3 KPKLLLTRNDYPRVSPA-YDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
PKL++T RV +L ++IT ++ + R+ + + + A++ +
Sbjct: 2 LPKLVITH----RVHEEILQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDR 56
Query: 62 VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
VD + L A
Sbjct: 57 VDADFLQ---------------------------------------------------AC 65
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
L+VI G D+ +D +RG+ + V + + AE IGLA+ + R +
Sbjct: 66 PELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF 125
Query: 182 IASGEWALKQTQTVISDIIG--LNGSTVGIVG---------------------------- 211
+ SG++ + G L+ +TVG +G
Sbjct: 126 VRSGKF-----RGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 212 ----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGL 254
LG + V L A SDFI + L DT L+ + RG +
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPE-------PMPADHPLVQLDNC 294
+D+ A++ L ++GG DV E P D L+ N
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNT 287
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 169 bits (430), Expect = 1e-50
Identities = 69/336 (20%), Positives = 115/336 (34%), Gaps = 104/336 (30%)
Query: 3 KPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
+PK+ + ++ A + L+ D+ + + ++ +P K
Sbjct: 2 RPKVGVLL----KMKREALEELKKYADVEIIL----YPSGEELKGVIGRFDGIIVSPTTK 53
Query: 62 VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
+ +E L+
Sbjct: 54 ITREVLE---------------------------------------------------NA 62
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
+ LKVIS S G+D++ L++ RGI V V + S+AVAEF +GL I + R+
Sbjct: 63 ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF 122
Query: 182 IASGEWALKQ-TQTVISDIIGLNGSTVGIVG----------------------------- 211
I GEW T I L G VGI+G
Sbjct: 123 IRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVN 182
Query: 212 --TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------RGGLLDQ 257
EL A+ + +D L +SD + + LT+DT +I ++ RG L+D+
Sbjct: 183 VEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDE 242
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
+A+ E ++ K+ G DV EP+
Sbjct: 243 KAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWE 278
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 166 bits (422), Expect = 2e-49
Identities = 64/343 (18%), Positives = 109/343 (31%), Gaps = 93/343 (27%)
Query: 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
M +P++LL + + + + F++I D F + L+ +
Sbjct: 1 MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPAN----LTTHDGFKQALR--------EKR 48
Query: 61 KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
D EA+ IK P ++D ++
Sbjct: 49 YGDFEAI------------------------IKLAVENGTESYPWNADL-------ISHL 77
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
+LKV + G D L LD + RG+ A ++ + L ++V R
Sbjct: 78 PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSER 137
Query: 181 CIASGEWALKQTQTVISDIIG--LNGSTVGIVG--------------------------- 211
+G+ + G +G VG
Sbjct: 138 AARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP 197
Query: 212 ------TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------R 251
LGA+ V L+ L +SD + V+ K T LI F R
Sbjct: 198 ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257
Query: 252 GGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
G ++ Q+AL+ L+ K+ AGLDV EP L+++ +
Sbjct: 258 GPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHV 299
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 164 bits (417), Expect = 8e-49
Identities = 70/335 (20%), Positives = 112/335 (33%), Gaps = 102/335 (30%)
Query: 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
M +L+ + L+ F + Y RD + + A++ N +
Sbjct: 21 MEAIGVLMMCPMSTYLE---QELDKRFKLFRYW--TQPAQRDFLALQAESIRAVVGNSNA 75
Query: 61 KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
D E +D A
Sbjct: 76 GADAELID---------------------------------------------------A 84
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
+ L+++S+FSVG D + L + + +G+RV V +D VA+ IGL +AV RR +
Sbjct: 85 LPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDK 144
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------TE 213
+ G W + + +G VGI+G
Sbjct: 145 YVRRGAWK-FGDFKLTTKF---SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 214 LGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
+ L + SD + V C LT +T +I R+ RG +D+
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260
Query: 260 LVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
LV L + ++GGAGLDV EP L L+N
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENV 294
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 162 bits (413), Expect = 2e-48
Identities = 38/216 (17%), Positives = 67/216 (31%), Gaps = 48/216 (22%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
+ LK I + G DHL + I + V ++DAVAEF + L +A +R Q
Sbjct: 47 KMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYG 105
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------- 212
+ G++ +I + G V ++G
Sbjct: 106 EKMKRGDYGRD------VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE 159
Query: 213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
L+ ++ L K T L+ + R +LD++
Sbjct: 160 GPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDG 219
Query: 260 LVEFLRDKKIGGAGLDVMI-PEPMPADHPLVQLDNC 294
++ L+++ DV D L N
Sbjct: 220 VLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 255
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 157 bits (399), Expect = 4e-46
Identities = 63/335 (18%), Positives = 100/335 (29%), Gaps = 102/335 (30%)
Query: 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
KP LLL P V D L+ + + R L A+
Sbjct: 28 NVKPDLLLVEPMMPFVM---DELQRNYSVHRLY---QAADRPALEAALPSIRAVATGGGA 81
Query: 61 KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
+ E ++
Sbjct: 82 GLSNEWME---------------------------------------------------K 90
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
+ +L +I+ VG D + L + + R I V T V +D VA+ I L +AV RR G
Sbjct: 91 LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDR 150
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------TE 213
+ G WA + + G +G++G +
Sbjct: 151 LVREGRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG 207
Query: 214 LGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
+ L SD + V A + T+ ++ RG ++D++A
Sbjct: 208 VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDA 267
Query: 260 LVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
L+E L+ I GAGLDV + EP N
Sbjct: 268 LIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNT 301
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 157 bits (398), Expect = 2e-45
Identities = 48/220 (21%), Positives = 76/220 (34%), Gaps = 49/220 (22%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
KNLK+ T +G DH+ L R + V V +S +VAE + + +++ R + H
Sbjct: 110 KAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSH 169
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
G W + + D L VG V
Sbjct: 170 EWARKGGWNIADCVSHAYD---LEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP 226
Query: 212 ----TELGAQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
EL + + D + + C L +TE +I + RG
Sbjct: 227 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 286
Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
L D++A+ L ++ G DV P+P P DHP +
Sbjct: 287 LCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 326
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 153 bits (388), Expect = 2e-44
Identities = 65/342 (19%), Positives = 100/342 (29%), Gaps = 104/342 (30%)
Query: 1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
P + L + IL+D+ + + ++I + L L
Sbjct: 19 SHMPLVALLDGRDC--TVEMPILKDVATVAFCD---AQSTQEIHEKVLNEAVGALMYHTI 73
Query: 61 KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
+ +E L E + L++I G D NI + A
Sbjct: 74 TLTREDL-EKFKALRIIVRIGSGFD----------------------------NIDIKSA 104
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
GI V V S + A+ + + + RR H
Sbjct: 105 ----------------------GDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQ 142
Query: 181 CIASGEWALKQTQTVISDIIG--LNGSTVGIVG--------------------------- 211
+ G Q + G T+GI+G
Sbjct: 143 ALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS 202
Query: 212 ----TELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
LG Q V L L SD + + C L + LI RGG
Sbjct: 203 DGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGG 262
Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPLVQLDNC 294
L+D++AL + L++ +I GA LDV EP + PL N
Sbjct: 263 LVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL 304
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 151 bits (383), Expect = 7e-44
Identities = 54/276 (19%), Positives = 88/276 (31%), Gaps = 63/276 (22%)
Query: 75 KVISTFSVGHDHLHLDQIKSRG--IRVGTVGPVSSDAVAEFNI----------GLAIAVK 122
V+ + + L Q+++ V++ + + LA
Sbjct: 3 LVLMAQATKPEQL--QQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHPLLKTILARPTN 60
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
LK + S G D+L L +++ G+ V + +DA++E + ++V R +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------ 212
T L G + I GT
Sbjct: 121 RGARQWALPMTTS-----TLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH 175
Query: 213 -ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
A ++FI LT T L + F RG +D
Sbjct: 176 FHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTT 235
Query: 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
AL+ L ++ A LDV PEP+P DHPL Q D+
Sbjct: 236 ALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV 271
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 148 bits (375), Expect = 4e-43
Identities = 38/216 (17%), Positives = 69/216 (31%), Gaps = 52/216 (24%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
K K+I S G DH+ ++ I + S +VAE L +A ++ + +
Sbjct: 46 LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENN 104
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------- 212
+ +G + T L G +GI+G
Sbjct: 105 ELMKAGIFRQSPT-------TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVD 157
Query: 213 -ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
+ L QSDF+ + LT T ++ + R ++ +
Sbjct: 158 QNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKP 217
Query: 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
++ FL+++ DV EP + L N
Sbjct: 218 DMIGFLKERSDVWYLSDVWWNEPEITETN---LRNA 250
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 146 bits (371), Expect = 5e-42
Identities = 54/235 (22%), Positives = 87/235 (37%), Gaps = 66/235 (28%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
+ LK+I T SVG DH+ LD K +GI V + S ++VAE + + + +R ++
Sbjct: 61 KMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIE 120
Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVGT------------------------- 212
+ + ++ S+I+ LN T+G++GT
Sbjct: 121 DRVKKLNFSQD------SEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVK 174
Query: 213 -----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGL 254
E G LD L +SD I + TK+T +I ++ RG +
Sbjct: 175 REDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKV 234
Query: 255 LDQEALVEFLRDKKIGGAGLDVM---------------IPEPMPADHPLVQLDNC 294
+D +AL + K G GLDV + L DN
Sbjct: 235 VDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNV 289
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 144 bits (367), Expect = 1e-41
Identities = 83/341 (24%), Positives = 126/341 (36%), Gaps = 114/341 (33%)
Query: 1 MSKPKLLLTRNDYPRVSP-AYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNP 58
M + K+L+ + A +L+D ++I D +E +K A++
Sbjct: 1 MKRMKVLVAA----PLHEKAIQVLKDAGLEVIYEEY----PDEDRLVELVKDVEAIIVRS 52
Query: 59 HQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLA 118
KV + + ES LKVI+ VG D NI +
Sbjct: 53 KPKVTRRVI-ESAPKLKVIARAGVGLD----------------------------NIDVE 83
Query: 119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 178
A K +GI V SS +VAE +GL +V+R+
Sbjct: 84 AA----------------------KEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFA 121
Query: 179 HNCIASGEWALKQTQTVISDIIG--LNGSTVGIVG------------------------- 211
+ G WA K+ +G L G T+GI+G
Sbjct: 122 DRKMREGVWAKKE-------AMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPY 174
Query: 212 ------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RG 252
E+ + V L+TL +SD + + L + T LI ++ RG
Sbjct: 175 PNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRG 234
Query: 253 GLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
++D ALV+ L++ I GAGLDV EP+P DHPL + DN
Sbjct: 235 PVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDN 275
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 145 bits (369), Expect = 1e-41
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 49/220 (22%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
KNLK++ T +G DH+ L + G+ V V + +VAE + + + R F G+
Sbjct: 83 KAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGY 142
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
N + GEW + D L G T+G VG
Sbjct: 143 NQVVKGEWNVAGIAYRAYD---LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA 199
Query: 212 ----TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
E GA+ V L+ + + D I + LT+ T + ++ RG
Sbjct: 200 PELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGA 259
Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
+++++A+V+ + IGG DV P+P P DHP + N
Sbjct: 260 IMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 299
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 138 bits (350), Expect = 7e-39
Identities = 50/229 (21%), Positives = 76/229 (33%), Gaps = 55/229 (24%)
Query: 120 AVKNLKVISTFSV----GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 175
+ LK+IS H+ L+ +G+ V G S A AE L +A RR
Sbjct: 68 RLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVV-LEGKGSPVAPAELTWALVMAAQRRI 126
Query: 176 QQGHNCIASGEWALKQTQTVISDI-----IGLNGSTVGIVG------------------- 211
Q + G W ++ L G T+GI G
Sbjct: 127 PQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNV 186
Query: 212 ------------TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------- 250
G + D L QSD + V L +T +I
Sbjct: 187 LVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTAL 246
Query: 251 -----RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
R L+++ +V L + G A +DV EP+ H L++++NC
Sbjct: 247 FVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENC 295
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 138 bits (351), Expect = 7e-39
Identities = 64/343 (18%), Positives = 113/343 (32%), Gaps = 107/343 (31%)
Query: 1 MSKPKLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPH 59
+ KL + ++ + L+D ++IT EG + + + ++ P
Sbjct: 15 ADEEKLYGCTENKLGIA---NWLKDQGHELITTSDKEG--GNSVLDQHIPDADIIITTPF 69
Query: 60 Q--KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGL 117
+ KE + + + LK++ VG DH+ LD I G +
Sbjct: 70 HPAYITKERI-DKAKKLKLVVVAGVGSDHIDLDYINQTGKK------------------- 109
Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
I+V T S + +VAE + + + R F
Sbjct: 110 -ISVLE----VTGS------------------------NVVSVAEHVVMTMLVLVRNFVP 140
Query: 178 GHNCIASGEWALKQTQTVISDIIGLNGSTVGIVG-------------------------- 211
H I + +W + D + G T+ +G
Sbjct: 141 AHEQIINHDWEVAAIAKDAYD---IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ 197
Query: 212 -------TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------- 250
++GA+ V ++ L AQ+D + V L T+ LI ++
Sbjct: 198 ALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA 257
Query: 251 RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
RG + E + L ++ G G DV P+P P DHP + N
Sbjct: 258 RGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRN 300
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 137 bits (347), Expect = 1e-38
Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 65/234 (27%)
Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
A+A + +S +VG D++ + + K G ++ V S +A+AE A + R+ +
Sbjct: 65 ALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKA 124
Query: 178 GHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVGT----------------------- 212
+A + IG + VG+VGT
Sbjct: 125 MDEKVARHDLRWA-------PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI 177
Query: 213 -------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RG 252
+ G + LD L Q+D I + +I + RG
Sbjct: 178 FRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237
Query: 253 GLLDQEALVEFLRDKKIGGAGLDVMIPEPM-------------PADHPLVQLDN 293
L+D +A++ L KI G +DV E L+ N
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPN 291
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 136 bits (344), Expect = 5e-38
Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 63/233 (27%)
Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
+ +K ++ +VG D++ + +K GIR+ V S A+AEF + + + R +
Sbjct: 63 KMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGK 122
Query: 178 GHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVGT----------------------- 212
+ +G++ IG L TVG++GT
Sbjct: 123 VQAQLQAGDYEKA------GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDP 176
Query: 213 ------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
V L+ L QSD I + + +I F R
Sbjct: 177 YPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPN 236
Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEP-------------MPADHPLVQLDN 293
L+D +A++ L+ K+ G G+D E P L+ + N
Sbjct: 237 LIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPN 289
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 131 bits (332), Expect = 2e-36
Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 52/217 (23%)
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
+K I T + G DH+ + K G + V S +A+AE + A+ + R +
Sbjct: 69 GVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRT 128
Query: 183 ASGEWALKQTQTVISDIIG--LNGSTVGIVGT---------------------------- 212
A + + + + + TVG+VG
Sbjct: 129 AKKNFKVD------AFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG 182
Query: 213 -ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
E V LD + +SD I + K+ ++ R RG L+D E
Sbjct: 183 IEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTE 242
Query: 259 ALVEFLRDKKIGGAGLDVMIPEP--MPADHPLVQLDN 293
A++E + K+GG G DV+ E D +L+N
Sbjct: 243 AVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLEN 279
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 125 bits (316), Expect = 5e-34
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 54/220 (24%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A + L+V+ G D++ L+ +GI V +S + AE G+ + ++R+ Q
Sbjct: 86 AAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAT 145
Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
+ G+W K+ +G LNG T+GI+G
Sbjct: 146 ASMKDGKWERKK-------FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII 198
Query: 212 -----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
G Q +PL+ + DFI V L T L+ F RGG
Sbjct: 199 SPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGG 258
Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
++D+ AL+ L+ + GA LDV EP P D LV +N
Sbjct: 259 IVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEN 297
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 127 bits (322), Expect = 9e-34
Identities = 72/340 (21%), Positives = 112/340 (32%), Gaps = 114/340 (33%)
Query: 1 MSKPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPH 59
+S P +L+ +++P L D ++ RD + + ALL
Sbjct: 2 VSLPVVLIAD----KLAPSTVAALGDQVEVRWVD----GPDRDKLLAAVPEADALLVRSA 53
Query: 60 QKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAI 119
VD E L
Sbjct: 54 TTVDAEVLA--------------------------------------------------- 62
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
A LK+++ VG D++ +D +RG+ V + + AE + L +A SR+
Sbjct: 63 AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 122
Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
+ W G + G TVG+VG
Sbjct: 123 ASLREHTWKRSS-------FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 175
Query: 212 -----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
+LG +L+ LD L A++DFI V T +T LI ++ RGG
Sbjct: 176 SPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGG 235
Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
L+D+ AL + + + AGLDV EP D PL +L
Sbjct: 236 LVDEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQ 274
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 122 bits (309), Expect = 3e-33
Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 57/222 (25%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
K LK+I+ +G D++ ++ + R I+V S+D+ E IGL IA +R+
Sbjct: 65 KGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSM 124
Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
SG + I G L G T+GIVG
Sbjct: 125 ALAKSGIF---------KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD 175
Query: 212 -----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
++ A+ V L+ L SD I + ++KD + +I QF R
Sbjct: 176 IREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAV 235
Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADH--PLVQLDN 293
++ +AL+++++ K+ DV EP + L++ +
Sbjct: 236 AVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHER 277
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 114 bits (287), Expect = 6e-30
Identities = 48/217 (22%), Positives = 75/217 (34%), Gaps = 52/217 (23%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
L + G D L LD R ++ V + ++E+ G +++ R+
Sbjct: 66 NKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQ 124
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGT-ELGAQLVP-------------------- 220
W Q L G T+ I+GT +G +
Sbjct: 125 QKQRLWQSHPYQG-------LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERA 177
Query: 221 ----------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
L+ + AQ+D I T++T L +F RG +++
Sbjct: 178 GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE 237
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
L+ LR K+G A LDV EP+PAD PL N
Sbjct: 238 GDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNL 274
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 111 bits (280), Expect = 2e-28
Identities = 62/339 (18%), Positives = 104/339 (30%), Gaps = 108/339 (31%)
Query: 2 SKPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
+ +LL +S A + + + + + + I+ + +
Sbjct: 14 DRINVLLLEG----ISQTAVEYFKSSGYTNVTHLPKA-LDKADLIKAISSAHIIGIRSRT 68
Query: 61 KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
++ +E + L + FSVG + + L + RGI V FN
Sbjct: 69 QLTEEIF-AAANRLIAVGCFSVGTNQVELKAARKRGIPV-------------FN------ 108
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
+ FS ++ +VAE IG I + RR
Sbjct: 109 -------APFS------------------------NTRSVAELVIGEIIMLMRRIFPRSV 137
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG----------------------------T 212
+G W + + G T+GIVG
Sbjct: 138 SAHAGGWEKTAIGSR-----EVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ 192
Query: 213 ELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
+ LD L SD + + +K T +LI + RG +D E
Sbjct: 193 YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLE 252
Query: 259 ALVEFLRDKKIGGAGLDVMIPEP----MPADHPLVQLDN 293
AL + L++ + GA +DV EP PL L+N
Sbjct: 253 ALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLEN 291
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 109 bits (274), Expect = 2e-27
Identities = 59/339 (17%), Positives = 98/339 (28%), Gaps = 108/339 (31%)
Query: 2 SKPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
K K LL V A + L + + E ++ +
Sbjct: 3 DKIKFLLVEG----VHQKALESLRAAGYTNIEFHKGA-LDDEQLKESIRDAHFIGLRSRT 57
Query: 61 KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
+ ++ + + E L I F++G + + LD RG I
Sbjct: 58 HLTEDVI-NAAEKLVAIGAFAIGTNQVDLDAAAKRG----------------------IP 94
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
V N + FS ++ +VAE IG + + R + +
Sbjct: 95 VFN----APFS------------------------NTRSVAELVIGELLLLLRGVPEANA 126
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG----------------------------- 211
G + G +GI+G
Sbjct: 127 KAHRGVGNKLAAGSF-----EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 181
Query: 212 TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
Q+ L L SD + + T+ ++G K+ RG ++D
Sbjct: 182 LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIP 241
Query: 259 ALVEFLRDKKIGGAGLDVMIPEP----MPADHPLVQLDN 293
AL + L K + GA +DV EP P PL + DN
Sbjct: 242 ALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDN 280
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 105 bits (264), Expect = 1e-26
Identities = 38/224 (16%), Positives = 61/224 (27%), Gaps = 57/224 (25%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIR------VGTVGPVSSDAVAEFNIGLAIAVSR 173
A + LK + G D + + + E+ + + R
Sbjct: 56 AGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFR 115
Query: 174 RFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-ELGAQLVP------------ 220
RF W T +VGI+G LGA++
Sbjct: 116 RFDDYQALKNQALWKPLPEYT-------REEFSVGIMGAGVLGAKVAESLQAWGFPLRCW 168
Query: 221 ------------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------ 250
L Q+ + T T +I +
Sbjct: 169 SRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNL 228
Query: 251 -RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
RG + + L+ L K+ GA LDV EP+P + PL +
Sbjct: 229 ARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPR 272
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 104 bits (261), Expect = 7e-26
Identities = 53/337 (15%), Positives = 91/337 (27%), Gaps = 131/337 (38%)
Query: 2 SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
+ K+L+ N + A ++ + ++ P R I +E+L AL+ K
Sbjct: 2 NAMKILVDEN----MPYARELFSRLGEVKAVP------GRPIPVEELNHADALMVRSVTK 51
Query: 62 VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
V++ L G + + T + G DH+ +K G I
Sbjct: 52 VNESLLS--GTPINFVGTATAGTDHVDEAWLKQAG----------------------IGF 87
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
+ ++ AV E+ + ++ R
Sbjct: 88 SA----APGC------------------------NAIAVVEYVFSALLMLAERDG----- 114
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVG----------------------------TE 213
L T+GIVG
Sbjct: 115 ------------------FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG 156
Query: 214 LGAQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGGLLD 256
LD L ++D + L KD T L RG ++D
Sbjct: 157 DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVD 216
Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
AL+ L + LDV EP + L++ +
Sbjct: 217 NAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVD 252
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 97.8 bits (244), Expect = 2e-23
Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 70/220 (31%)
Query: 119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 178
+A ++ + T ++G DHL LD GI + ++ V ++ +G +A++ +G
Sbjct: 54 LAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV--RG 111
Query: 179 HNCIASGEWALKQTQTVISDIIGLNGSTVGIVG--------------------------- 211
+ L T G+VG
Sbjct: 112 AD---------------------LAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQ 150
Query: 212 -TELGAQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGG 253
E + V L+ L A++D I + L +D T L+ + RG
Sbjct: 151 AREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGA 210
Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
++D +AL L LDV E P P +
Sbjct: 211 VVDNQALRRLLEGGADLEVALDVWEGE--PQADPELAARC 248
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 5e-06
Identities = 49/244 (20%), Positives = 76/244 (31%), Gaps = 77/244 (31%)
Query: 13 YPRVSPAYDILEDMFDIITYPISEGRM-P----RDIFIEKLKGCSALLCNPHQKVDKE-- 65
YP S ILED + +EG P ++ E+++ N H K+
Sbjct: 314 YPNTSLPPSILED-----SLENNEGVPSPMLSISNLTQEQVQ-DYVNKTNSHLPAGKQVE 367
Query: 66 -ALDESGENLKVISTFSVGH--------DHLH-------LDQIK----SRGIRVGTV-GP 104
+L +NL V+S G L LDQ + R ++ P
Sbjct: 368 ISLVNGAKNL-VVS----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 105 VSS--------DAVAEF-----NIGLAIAVKNLK--VISTFSVGHDHLHLDQ-IKSRGIR 148
V+S A ++ K+++ V TF G D L I R +
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLSGSISERIVD 481
Query: 149 VGTVGPVSSDAVAEFNI------------GLAIAVSRRFQ-QGHNCIASG--------EW 187
PV + +F GL + R G I +G ++
Sbjct: 482 CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Query: 188 ALKQ 191
KQ
Sbjct: 542 GFKQ 545
Score = 43.1 bits (101), Expect = 9e-05
Identities = 46/270 (17%), Positives = 83/270 (30%), Gaps = 101/270 (37%)
Query: 50 GCSALLCNPHQKVDKEALDESGENLKVIST--FSV-GHDHLHLDQIKSRGIRVGTVGPVS 106
G P+ + L++S EN + + + S+ L +Q++ + + P
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPAG 363
Query: 107 SD-AVAEFN--------------IGLAIAVKNLKVISTFSVGHDHLHLDQIK----SRGI 147
++ N GL + ++ K S LDQ + R +
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS---------GLDQSRIPFSERKL 414
Query: 148 RVGTV-GPVSS--------DA-------VAEFNIG-----LAIAVSRRFQ--QGHN---- 180
+ PV+S A + + N+ + I V + G +
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVL 471
Query: 181 ----------CIASG--EWALKQTQTVISDII--GLNG-STVGIV------GTELGAQLV 219
CI +W TQ + I+ G G S +G++ GT G +++
Sbjct: 472 SGSISERIVDCIIRLPVKWE-TTTQFKATHILDFGPGGASGLGVLTHRNKDGT--GVRVI 528
Query: 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQ 249
TL D G KQ
Sbjct: 529 VAGTLDINPD-------------DDYGFKQ 545
Score = 30.4 bits (68), Expect = 0.77
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 24/112 (21%)
Query: 5 KLLLTRNDYPRVSPAYDIL-EDMFDIITYPISEGRMPRDI-------FIEKLKGCSALLC 56
+++ R +V+ D L + +I I+ GR+ +E++ + L
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIA--INPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 57 ---N---PHQKV----DKEALDESGENLKVISTFSVGHDHL----HLDQIKS 94
N +Q+ D ALD L I + L L++++
Sbjct: 1842 EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.004
Identities = 44/293 (15%), Positives = 87/293 (29%), Gaps = 72/293 (24%)
Query: 21 DILEDMFDIITYPIS-EGRMP---RDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKV 76
++L + + PI E R P ++IE L N +Q K + +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIE----QRDRLYNDNQVFAKYNV-SRLQPYLK 139
Query: 77 ISTFSVGHDHLHLDQIKS-RGIRV-GTVGPVSSDAVAEFNIG---LAIAV-KNLKVISTF 130
+ L +++ + + + G +G G +A+ V + KV
Sbjct: 140 LRQ--------ALLELRPAKNVLIDGVLG-----------SGKTWVALDVCLSYKVQCKM 180
Query: 131 -------SVGH---DHLHLDQIKSRGIRVGTVGPVSSDAVA--EFNIGLAIAVSRRFQQG 178
++ + L+ ++ ++ SD + + I A RR +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK- 239
Query: 179 HNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-ELGAQ-LVPLDTLCAQSDFIFVTCA 236
+ V+ ++ L + L+ T + F VT
Sbjct: 240 -------SKPYENCLLVLLNV-----QNAKAWNAFNLSCKILL---T----TRFKQVTDF 280
Query: 237 LTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV 289
L+ T I L E L K + D +P + +P
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRPQD--LPREVLTTNPRR 329
>3dnu_A Protein HIPA; persistence, MDT, multidrug resistance, unknown
function; 1.54A {Escherichia coli} PDB: 3dnt_A 3dnv_A*
3dnw_A* 3hzi_A* 2wiu_A 3fbr_A*
Length = 440
Score = 28.1 bits (62), Expect = 4.3
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 6 LLLTRNDYPRVSPAYDILEDM 26
+ + R++P YDI+
Sbjct: 317 VFIQAGGSYRLTPFYDIISAF 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.405
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,554,502
Number of extensions: 280128
Number of successful extensions: 975
Number of sequences better than 10.0: 1
Number of HSP's gapped: 845
Number of HSP's successfully gapped: 90
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)