RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5259
(294 letters)
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 81.2 bits (199), Expect = 3e-19
Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 43/179 (24%)
Query: 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELG--- 215
+VAE + + +++ R + H G W + + D+ ++ TV L
Sbjct: 2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLR 61
Query: 216 ---------------------------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK 248
+ + D + + C L +TE +I +
Sbjct: 62 RLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDE 121
Query: 249 QF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
RG L D++A+ L ++ G DV P+P P DHP +
Sbjct: 122 TLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 76.9 bits (188), Expect = 1e-17
Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 40/177 (22%)
Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEW--------------------------ALK 190
+ AE + L +A SR+ + W +
Sbjct: 2 IHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQ 61
Query: 191 QTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250
+ + ++ + +LG +L+ LD L A++DFI V T +T LI ++
Sbjct: 62 RIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEAL 121
Query: 251 -------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
RGGL+D+ AL + + + AGLDV EP D PL +L
Sbjct: 122 AKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQV 177
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 74.6 bits (183), Expect = 2e-17
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
K K+L+T A + +D+I + + ++ D IE K ALL ++K
Sbjct: 1 KKKILITWPLPE---AAMARARESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEKC 56
Query: 63 DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
KE +D EN+K IST+S+G DH+ LD K+RGI+VG ++ A + +
Sbjct: 57 RKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLID 116
Query: 123 NL 124
L
Sbjct: 117 AL 118
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 75.7 bits (185), Expect = 4e-17
Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 45/182 (24%)
Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVGTEL 214
+ A AE + L + +RR +G I + W + ++ + + G +
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61
Query: 215 GAQL-----------------------------VPLDTLCAQSDFIFVTCALTKDTEQLI 245
A+ LD+L + S F + T +T
Sbjct: 62 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121
Query: 246 GRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLD 292
+ RG L+D E +V L ++ AG DV EP + L
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLP 180
Query: 293 NC 294
N
Sbjct: 181 NT 182
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 70.1 bits (170), Expect = 4e-15
Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 48/185 (25%)
Query: 158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWA--LKQTQTVISDIIGLNGSTVGIVGTELG 215
+ A+ + + + RR H + G ++Q + V S + G T+GI+G
Sbjct: 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60
Query: 216 AQLVP--------------------------------LDTLCAQSDFIFVTCALTKDTEQ 243
Q V L L SD + + C L +
Sbjct: 61 GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120
Query: 244 LIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPLV 289
LI RGGL+D++AL + L++ +I GA LDV EP + PL
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180
Query: 290 QLDNC 294
N
Sbjct: 181 DAPNL 185
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 67.3 bits (163), Expect = 3e-14
Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 41/179 (22%)
Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---- 212
+ +VAE IG + + R + + G + + L G +GT
Sbjct: 2 TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGI 61
Query: 213 --------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-- 250
Q+ L L SD + + T+ ++G K+
Sbjct: 62 LAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISL 121
Query: 251 -----------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDNC 294
RG ++D AL + L K + GA +DV EP P PL + DN
Sbjct: 122 MKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 180
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 57.3 bits (138), Expect = 4e-11
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
P + L D + IL+D+ + + + ++I + L L +
Sbjct: 2 PLVALL--DGRDCTVEMPILKDVATVAFC---DAQSTQEIHEKVLNEAVGALMYHTITLT 56
Query: 64 KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
+E L E + L++I G D++ + GI P +S + +I +
Sbjct: 57 REDL-EKFKALRIIVRIGSGFDNIDIKSAGDLGI-AVCNVPAASVYSEQASIEMREEA 112
Score = 49.6 bits (118), Expect = 3e-08
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
K L++I G D++ + GI P +S + +I + +R ++
Sbjct: 62 KFKALRIIVRIGSGFDNIDIKSAGDLGI-AVCNVPAASVYSEQASIEMREEAAREIRRAI 120
Query: 180 NCIASGEW 187
Sbjct: 121 TGRIPDSL 128
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 55.9 bits (134), Expect = 1e-10
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 8/120 (6%)
Query: 2 SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
S P +L+ P L D ++ RD + + ALL
Sbjct: 1 SLPVVLIADKLAPS---TVAALGDQVEVRWVD----GPDRDKLLAAVPEADALLVRSATT 53
Query: 62 VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
VD E + + LK+++ VG D++ +D +RG+ V +S A A+ G +A
Sbjct: 54 VDAE-VLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAE 112
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 53.9 bits (129), Expect = 6e-10
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 27 FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGE-NLKVISTFSVGHD 85
+ + + +E KG + ++ +K ++ +VG D
Sbjct: 25 NTLEYHT----EFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD 80
Query: 86 HLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
++ + +K GIR+ V + AV +
Sbjct: 81 NIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHL 116
Score = 51.6 bits (123), Expect = 5e-09
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
+K ++ +VG D++ + +K GIR+ V + AV + +G
Sbjct: 68 GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 53.0 bits (127), Expect = 2e-09
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 5/104 (4%)
Query: 18 PAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDE-SGENLKV 76
P ED + ++ + + + KG ++ E L + +
Sbjct: 14 PFLKEWEDAHKDVEVEYTDKLLTPET-VALAKGADGVVVYQQLDYIAETLQALADNGITK 72
Query: 77 ISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
+S +VG D++ + + K G ++ V S + +
Sbjct: 73 MSLRNVGVDNIDMAKAKELGFQITNVPVYS---YTTHAVRNMVV 113
Score = 44.5 bits (105), Expect = 2e-06
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
A+A + +S +VG D++ + + K G ++ V S + + +
Sbjct: 64 ALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYS---YTTHAVRNMVVKAFDNNL 120
Query: 178 GHNCIASGEWALK 190
E +K
Sbjct: 121 ELVEGKEAETPVK 133
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 52.3 bits (125), Expect = 7e-09
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 34 ISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVISTFSVGHDHLHLDQ 91
S+ P +F +L ++ P + E + +NLK+ T +G DH+ L
Sbjct: 73 TSDKDGPDSVFERELVDADVVISQPFWPAYLTPERI-AKAKNLKLALTAGIGSDHVDLQS 131
Query: 92 IKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNL 124
R + V V +S + A + L
Sbjct: 132 AIDRNVTVAEVTYCNSTTLTAQARYAAGTREIL 164
Score = 47.7 bits (113), Expect = 2e-07
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE--------FNIGLAIAV 171
KNLK+ T +G DH+ L R + V V +S + I
Sbjct: 110 KAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFE 169
Query: 172 SRRFQQGHNCIASGEWA 188
R + + + G A
Sbjct: 170 GRPIRDEYLIVQGGALA 186
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 52.1 bits (123), Expect = 8e-09
Identities = 24/172 (13%), Positives = 43/172 (25%), Gaps = 35/172 (20%)
Query: 158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQ 217
DAVAEF + L +A +R Q + G++ +I I
Sbjct: 2 DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKIL 61
Query: 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGR------------------------------ 247
+ S ++ + R
Sbjct: 62 AALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAED 121
Query: 248 ----KQFRGGLLDQEALVEFLRDKKIGGAGLDVMI-PEPMPADHPLVQLDNC 294
R +LD++ ++ L+++ DV D L N
Sbjct: 122 AVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 48.9 bits (116), Expect = 4e-08
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 2 SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
K K LL + + A + L +G + + E ++ +
Sbjct: 3 DKIKFLLVEGVHQK---ALESLRAAGYTNIE-FHKGALDDEQLKESIRDAHFIGLRSRTH 58
Query: 62 VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
+ ++ + E L I F++G + + LD RGI V S+ E NIGL +A
Sbjct: 59 LTEDV-INAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQE-NIGLEVAG 116
Query: 122 KNLK 125
K +K
Sbjct: 117 KLIK 120
Score = 29.3 bits (65), Expect = 0.26
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
L I F++G + + LD RGI V S+ E NIGL +A + + N
Sbjct: 69 KLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQE-NIGLEVA-GKLIKYSDN 124
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 46.8 bits (109), Expect = 7e-07
Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 51/190 (26%)
Query: 156 SSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQT------------QTVISDIIGLN 203
S A+AEF + + + R + + +G++ T I +
Sbjct: 1 SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA 60
Query: 204 GSTVGIVG-------------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250
G V L+ L QSD I + + +I F
Sbjct: 61 IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAF 120
Query: 251 -------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPM-------------PA 284
R L+D +A++ L+ K+ G G+D E P
Sbjct: 121 NLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPL 180
Query: 285 DHPLVQLDNC 294
L+ + N
Sbjct: 181 WDELLGMPNV 190
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 40.9 bits (94), Expect = 6e-05
Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 51/188 (27%)
Query: 158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQT------------------------- 192
+A+AE A + R+ + +A + T
Sbjct: 2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQI 61
Query: 193 QTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-- 250
+ + G + LD L Q+D I + +I +
Sbjct: 62 MEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121
Query: 251 -----------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPM-------------PADH 286
RG L+D +A++ L KI G +DV E
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181
Query: 287 PLVQLDNC 294
L+ N
Sbjct: 182 DLIARPNV 189
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 38.8 bits (90), Expect = 1e-04
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 6/109 (5%)
Query: 29 IITYPISEG---RMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHD 85
+ + + + + I + + ++ E L LK I + G D
Sbjct: 4 YVNFELPPEAEEELRKYFKIVRGGDLGNVEAALVSRITAEEL-AKMPRLKFIQVVTAGLD 62
Query: 86 HLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA-VKNLKVISTFSVG 133
HL + I G G + + + V+NL +T
Sbjct: 63 HLPWESIPPHVTVAGNAGS-NGYGNERVWRQMVMEAVRNLITYATGGRP 110
Score = 35.0 bits (80), Expect = 0.002
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 1/100 (1%)
Query: 75 KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGH 134
++ F + + + + +R G +G V + V+ + LK I + G
Sbjct: 2 ELYVNFELPPEAEEELRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGL 61
Query: 135 DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 174
DHL + I G G + + + R
Sbjct: 62 DHLPWESIPPHVTVAGNAGS-NGYGNERVWRQMVMEAVRN 100
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces
lividans [TaxId: 1916]}
Length = 192
Score = 26.7 bits (58), Expect = 3.1
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 89 LDQIKSRGIRVGTVGPVSSDAVA 111
+ +G+ G + P + AVA
Sbjct: 169 AQTLAGKGLCSGMISPQTGRAVA 191
Score = 26.7 bits (58), Expect = 3.1
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 139 LDQIKSRGIRVGTVGPVSSDAVA 161
+ +G+ G + P + AVA
Sbjct: 169 AQTLAGKGLCSGMISPQTGRAVA 191
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 24.4 bits (53), Expect = 7.6
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 129 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
F VG H HL + RVG V S A+ E+ + ++ +
Sbjct: 11 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.405
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,067,626
Number of extensions: 48397
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 34
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)