BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy526
(274 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357614147|gb|EHJ68936.1| putative Homeobox protein bagpipe [Danaus plexippus]
Length = 385
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 3/117 (2%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+GRKKRSRAAFSHAQVYELE+RF+ Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTK
Sbjct: 159 SGRKKRSRAAFSHAQVYELERRFSQQRYLSGPERADLAVSLKLTETQVKIWFQNRRYKTK 218
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSL 173
RKQ+QL E L A + +KVAVK+LV P Y + L P P + NS+
Sbjct: 219 RKQMQLQESGL---LANHARKVAVKVLVNGQLPDIKAYQAPCKNPALFPPPMLDNSI 272
>gi|410914283|ref|XP_003970617.1| PREDICTED: homeobox protein Nkx-3.2-like [Takifugu rubripes]
Length = 260
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/128 (62%), Positives = 95/128 (74%), Gaps = 12/128 (9%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 132 PKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 191
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLL-PPAPSMANSLY 174
KR+Q+ + +TP+A KKVAVK+LVR+ D + G+LL PP S+ S Y
Sbjct: 192 KRRQM-AADLMASTPAA---KKVAVKVLVRD------DQRQYSPGELLRPPLLSLQPS-Y 240
Query: 175 YYPLFYNM 182
YYP Y +
Sbjct: 241 YYPYAYCL 248
>gi|166796884|gb|AAI59242.1| NK3 homeobox 2 [Danio rerio]
Length = 245
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 92/128 (71%), Gaps = 12/128 (9%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 116 PKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 175
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLL-PPAPSMANSLY 174
KR+Q+ + SA KKVAVK+LVR+ D + G+LL PP S+ S Y
Sbjct: 176 KRRQM----AADLLASAPAAKKVAVKVLVRD------DRRQYSPGELLRPPLLSLQPS-Y 224
Query: 175 YYPLFYNM 182
YYP Y +
Sbjct: 225 YYPYTYCL 232
>gi|30023832|ref|NP_835233.1| homeobox protein Nkx-3.2 [Danio rerio]
gi|28273598|gb|AAO33928.1| bagpipe homeobox transcription factor Bapx1 [Danio rerio]
gi|190336857|gb|AAI62299.1| NK3 homeobox 2 [Danio rerio]
gi|190337902|gb|AAI62289.1| NK3 homeobox 2 [Danio rerio]
Length = 245
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 92/128 (71%), Gaps = 12/128 (9%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 116 PKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 175
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLL-PPAPSMANSLY 174
KR+Q+ + SA KKVAVK+LVR+ D + G+LL PP S+ S Y
Sbjct: 176 KRRQM----AADLLASAPAAKKVAVKVLVRD------DRRQYSPGELLRPPLLSLQPS-Y 224
Query: 175 YYPLFYNM 182
YYP Y +
Sbjct: 225 YYPYTYCL 232
>gi|432877095|ref|XP_004073104.1| PREDICTED: homeobox protein Nkx-3.2-like [Oryzias latipes]
Length = 265
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 95/128 (74%), Gaps = 12/128 (9%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 137 PKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 196
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLL-PPAPSMANSLY 174
KR+Q+ + +TP+A KKVAVK+LVR+ D + G++L PP S+ S Y
Sbjct: 197 KRRQM-AADLMASTPAA---KKVAVKVLVRD------DQRQYSPGEILRPPLLSLQPS-Y 245
Query: 175 YYPLFYNM 182
YYP Y +
Sbjct: 246 YYPYAYCL 253
>gi|91091010|ref|XP_975015.1| PREDICTED: similar to Homeobox protein bagpipe (NK-3) [Tribolium
castaneum]
gi|270014047|gb|EFA10495.1| hypothetical protein TcasGA2_TC012743 [Tribolium castaneum]
Length = 279
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/109 (66%), Positives = 88/109 (80%), Gaps = 5/109 (4%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P + S G SQP GRKKRSRAAF+HAQV+ELE+RF+ Q+YLSGPERAD+A++LKLT
Sbjct: 91 PPSQSEESGREPSQP--GRKKRSRAAFTHAQVFELERRFSQQRYLSGPERADLAQALKLT 148
Query: 101 ETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
ETQVKIW+QNRRYKTKRKQLQ+ E SL SA +KVAVK+LV++ P
Sbjct: 149 ETQVKIWYQNRRYKTKRKQLQMQESSLMGQSA---RKVAVKVLVKDDVP 194
>gi|348515405|ref|XP_003445230.1| PREDICTED: homeobox protein Nkx-3.2-like [Oreochromis niloticus]
Length = 261
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 95/128 (74%), Gaps = 12/128 (9%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 133 PKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 192
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLL-PPAPSMANSLY 174
KR+Q+ + +TP+A KKVAVK+LVR+ D + G++L PP S+ S Y
Sbjct: 193 KRRQM-AADLMASTPAA---KKVAVKVLVRD------DQRQYSPGEILRPPLLSLQPS-Y 241
Query: 175 YYPLFYNM 182
YYP Y +
Sbjct: 242 YYPYAYCL 249
>gi|259013466|ref|NP_001158476.1| NK3 homeobox 2-like [Saccoglossus kowalevskii]
gi|197734645|gb|ACH73218.1| bagpipe-like homeobox protein [Saccoglossus kowalevskii]
Length = 272
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 93/142 (65%), Gaps = 20/142 (14%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
Q Q P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A +LKLTE Q+KIWFQNR
Sbjct: 133 QLQTPKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAIALKLTEQQIKIWFQNR 192
Query: 112 RYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESH-----------PYGSDYLYGTQG 160
RYKTKR+QLQ L+ P + KKVA+K+LVR+ P+ + L G
Sbjct: 193 RYKTKRRQLQAA-AELSAPMS--AKKVAIKVLVRDDQRQYTPDDMFRPPFTYNMLLPAYG 249
Query: 161 KLLPPAPSMANSLYYYPLFYNM 182
+PP P Y PLF N+
Sbjct: 250 YHIPPRP------YPGPLFSNL 265
>gi|242018176|ref|XP_002429556.1| Homeobox protein Nkx-3.1, putative [Pediculus humanus corporis]
gi|212514510|gb|EEB16818.1| Homeobox protein Nkx-3.1, putative [Pediculus humanus corporis]
Length = 266
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 91/123 (73%), Gaps = 6/123 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSH+QVYELE+RFN Q+YLSG ER D+A +LKLTETQVKIWFQNRRYKTKRK
Sbjct: 95 RKKRSRAAFSHSQVYELERRFNQQRYLSGSERTDLANALKLTETQVKIWFQNRRYKTKRK 154
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLP--PAPSMANSLYYY 176
Q+Q+ + + + ++ G+KVAVK+LV ++ + G K++ P P + YYY
Sbjct: 155 QMQMADVNGSVRNSNAGRKVAVKVLVHDNQ----QNVNGESDKVMTSFPYPHIPLPYYYY 210
Query: 177 PLF 179
PLF
Sbjct: 211 PLF 213
>gi|157113790|ref|XP_001657903.1| nk homeobox protein [Aedes aegypti]
gi|108877578|gb|EAT41803.1| AAEL006597-PA [Aedes aegypti]
Length = 431
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 101/162 (62%), Gaps = 17/162 (10%)
Query: 46 NLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105
+LPG P RKKRSRAAFSH+QV+ELE+RF Q+YLSGPER+++AKSL+LTETQVK
Sbjct: 187 SLPG--DDAPTAARKKRSRAAFSHSQVFELERRFAQQRYLSGPERSELAKSLRLTETQVK 244
Query: 106 IWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPP 165
IWFQNRRYKTKRKQ+Q E ++ + + K+V V++LVRE YG + Q
Sbjct: 245 IWFQNRRYKTKRKQIQQHEAAILSAT----KRVPVQVLVREDGTYGPAAMLAGQ------ 294
Query: 166 APSMANSLYYYPLFYNMHSLYGTQGKLLPPAPSMANSLYYYP 207
P A+ L L H + G +PP P Y+YP
Sbjct: 295 -PHYASGLDPALLNVYRHQIQMAYGMPVPPMPFS----YFYP 331
>gi|395859512|ref|XP_003802082.1| PREDICTED: homeobox protein Nkx-3.2 [Otolemur garnettii]
Length = 333
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 88/126 (69%), Gaps = 13/126 (10%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 202 PKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 261
Query: 116 KRKQL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSL 173
KR+Q+ LL SA KKVAVK+LVR+ YL G L PP+
Sbjct: 262 KRRQMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGE--VLRPPSLLQLQPS 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|312379199|gb|EFR25555.1| hypothetical protein AND_09022 [Anopheles darlingi]
Length = 503
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 83/102 (81%), Gaps = 4/102 (3%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
LA + P+ RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AK+L+LTETQVKIWFQ
Sbjct: 234 LASDEMPSARKKRSRAAFSHAQVFELERRFAQQRYLSGPERSELAKNLRLTETQVKIWFQ 293
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYG 151
NRRYKTKRKQ+Q E +L + + K+V V++LVRE YG
Sbjct: 294 NRRYKTKRKQIQQHEAALLSAT----KRVPVQVLVREDGSYG 331
>gi|345497049|ref|XP_003427887.1| PREDICTED: homeobox protein Nkx-2.5-like [Nasonia vitripennis]
Length = 349
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 89/114 (78%), Gaps = 15/114 (13%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
QS P GRKKRSRAAFSHAQVYELE+RF AQKYLSGPERAD+A+ LKLTETQVKIWFQNR
Sbjct: 164 QSMP--GRKKRSRAAFSHAQVYELERRFAAQKYLSGPERADLARGLKLTETQVKIWFQNR 221
Query: 112 RYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPP 165
RYKTKR+Q Q L +N+ +A ++VAV++LV HP ++L+G LPP
Sbjct: 222 RYKTKRRQQQELGALVNSNAA---RRVAVRVLV---HP--DEHLHG-----LPP 262
>gi|431897220|gb|ELK06482.1| Homeobox protein Nkx-3.2 [Pteropus alecto]
Length = 282
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 154 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 213
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 214 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 259
Query: 174 YYYPLF 179
YYYP +
Sbjct: 260 YYYPYY 265
>gi|300797800|ref|NP_001180062.1| homeobox protein Nkx-3.2 [Bos taurus]
gi|296486279|tpg|DAA28392.1| TPA: NK3 homeobox 2-like [Bos taurus]
Length = 330
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 90/129 (69%), Gaps = 19/129 (14%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 199 PKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 258
Query: 116 KRKQL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMA 170
KR+Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 259 KRRQMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS-- 307
Query: 171 NSLYYYPLF 179
YYYP +
Sbjct: 308 ---YYYPYY 313
>gi|302564363|ref|NP_001181040.1| homeobox protein Nkx-3.2 [Macaca mulatta]
Length = 333
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|347970367|ref|XP_313453.5| AGAP003671-PA [Anopheles gambiae str. PEST]
gi|333468900|gb|EAA08821.5| AGAP003671-PA [Anopheles gambiae str. PEST]
Length = 485
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 98/152 (64%), Gaps = 15/152 (9%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AK+L+LTETQVKIWFQNRRYKT
Sbjct: 234 PSARKKRSRAAFSHAQVFELERRFAQQRYLSGPERSELAKNLRLTETQVKIWFQNRRYKT 293
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYY 175
KRKQ+Q E +L + + K+V V++LVRE YG G P A L
Sbjct: 294 KRKQIQQHEAALLSAT----KRVPVQVLVREDGSYGPMLAAGQ--------PHYATGL-- 339
Query: 176 YPLFYNMHSLYGTQGKLLPPAPSMANSLYYYP 207
P N++ +P PSM S Y+YP
Sbjct: 340 DPALLNVYRHQIQMAYGMPGIPSMPFS-YFYP 370
>gi|402868949|ref|XP_003898541.1| PREDICTED: homeobox protein Nkx-3.2 [Papio anubis]
Length = 333
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|334331406|ref|XP_001370214.2| PREDICTED: homeobox protein Nkx-3.2-like [Monodelphis domestica]
Length = 334
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/139 (57%), Positives = 93/139 (66%), Gaps = 23/139 (16%)
Query: 48 PGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIW 107
PG + P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIW
Sbjct: 195 PGEEEQSAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIW 254
Query: 108 FQNRRYKTKRKQL--QLLEGSLNTPSAGNGKKVAVKILVRES----HPYGSDYLYGTQGK 161
FQNRRYKTKR+Q+ LL SA KKVAVK+LVR+ HP G+
Sbjct: 255 FQNRRYKTKRRQMAADLLA------SAPAAKKVAVKVLVRDDQRQYHP----------GE 298
Query: 162 LL-PPAPSMANSLYYYPLF 179
+L PP+ YYYP +
Sbjct: 299 VLRPPSLLSLQPSYYYPYY 317
>gi|332218712|ref|XP_003258498.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-3.2 [Nomascus
leucogenys]
Length = 324
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 196 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 255
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 256 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 301
Query: 174 YYYPLF 179
YYYP +
Sbjct: 302 YYYPYY 307
>gi|296196874|ref|XP_002746019.1| PREDICTED: homeobox protein Nkx-3.2 [Callithrix jacchus]
Length = 333
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|4502365|ref|NP_001180.1| homeobox protein Nkx-3.2 [Homo sapiens]
gi|6016210|sp|P78367.2|NKX32_HUMAN RecName: Full=Homeobox protein Nkx-3.2; AltName: Full=Bagpipe
homeobox protein homolog 1; AltName: Full=Homeobox
protein NK-3 homolog B
gi|2305204|gb|AAB82783.1| homeodomain protein [Homo sapiens]
gi|2305206|gb|AAB82784.1| homeodomain protein [Homo sapiens]
gi|2766600|gb|AAC39536.1| homeodomain-containing protein BAPX1 [Homo sapiens]
gi|85567441|gb|AAI11967.1| NK3 homeobox 2 [Homo sapiens]
gi|108752096|gb|AAI11927.1| NKX3-2 protein [synthetic construct]
gi|110645557|gb|AAI18498.1| NKX3-2 protein [synthetic construct]
gi|119613120|gb|EAW92714.1| bagpipe homeobox homolog 1 (Drosophila) [Homo sapiens]
gi|167773123|gb|ABZ91996.1| NK3 homeobox 2 [synthetic construct]
gi|208966862|dbj|BAG73445.1| NK3 homeobox 2 [synthetic construct]
Length = 333
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|403286966|ref|XP_003934735.1| PREDICTED: homeobox protein Nkx-3.2 [Saimiri boliviensis
boliviensis]
Length = 333
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 90/129 (69%), Gaps = 19/129 (14%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 202 PKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 261
Query: 116 KRKQL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMA 170
KR+Q+ LL SA KKVAVK+LVR+ Y+ G + LLP PS
Sbjct: 262 KRRQMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYVPGEVLRPPSLLPLQPS-- 310
Query: 171 NSLYYYPLF 179
YYYP +
Sbjct: 311 ---YYYPYY 316
>gi|297673169|ref|XP_002814647.1| PREDICTED: homeobox protein Nkx-3.2 [Pongo abelii]
Length = 333
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|291385532|ref|XP_002709406.1| PREDICTED: NK3 homeobox 2 [Oryctolagus cuniculus]
Length = 333
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|410211618|gb|JAA03028.1| NK3 homeobox 2 [Pan troglodytes]
Length = 333
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|383856760|ref|XP_003703875.1| PREDICTED: homeobox protein HMX3-like [Megachile rotundata]
Length = 337
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 81/99 (81%), Gaps = 8/99 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQVYELE+RF AQKYLSGPERAD+A+ LKLTETQVKIWFQNRRYKTKR+
Sbjct: 177 RKKRSRAAFSHAQVYELERRFAAQKYLSGPERADLARGLKLTETQVKIWFQNRRYKTKRR 236
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYG 157
Q Q L +N+ GN ++VAV++LV HP ++L G
Sbjct: 237 QQQELGALVNS---GNARRVAVRVLV---HP--DEHLRG 267
>gi|426343853|ref|XP_004038497.1| PREDICTED: homeobox protein Nkx-3.2 [Gorilla gorilla gorilla]
Length = 498
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 91/126 (72%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 370 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 429
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL + P+A KKVAVK+LVR+ YL G + LLP PS
Sbjct: 430 QMAADLL---ASAPAA---KKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 475
Query: 174 YYYPLF 179
YYYP +
Sbjct: 476 YYYPYY 481
>gi|335293224|ref|XP_003356908.1| PREDICTED: homeobox protein Nkx-3.2-like [Sus scrofa]
Length = 337
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 209 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 268
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 269 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 314
Query: 174 YYYPLF 179
YYYP +
Sbjct: 315 YYYPYY 320
>gi|344252866|gb|EGW08970.1| Homeobox protein Nkx-3.2 [Cricetulus griseus]
Length = 261
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 133 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 192
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 193 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 238
Query: 174 YYYPLF 179
YYYP +
Sbjct: 239 YYYPYY 244
>gi|354491719|ref|XP_003508002.1| PREDICTED: homeobox protein Nkx-3.2-like, partial [Cricetulus
griseus]
Length = 260
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 132 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 191
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 192 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 237
Query: 174 YYYPLF 179
YYYP +
Sbjct: 238 YYYPYY 243
>gi|161016805|ref|NP_031550.2| homeobox protein Nkx-3.2 [Mus musculus]
gi|341941176|sp|P97503.2|NKX32_MOUSE RecName: Full=Homeobox protein Nkx-3.2; AltName: Full=Bagpipe
homeobox protein homolog 1; AltName: Full=Homeobox
protein NK-3 homolog B
gi|148705631|gb|EDL37578.1| bagpipe homeobox gene 1 homolog (Drosophila) [Mus musculus]
gi|148877990|gb|AAI45875.1| NK3 homeobox 2 [Mus musculus]
gi|148878324|gb|AAI45873.1| NK3 homeobox 2 [Mus musculus]
Length = 333
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|73951833|ref|XP_545940.2| PREDICTED: homeobox protein Nkx-3.2 [Canis lupus familiaris]
Length = 333
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|397513284|ref|XP_003826949.1| PREDICTED: homeobox protein Nkx-3.2 [Pan paniscus]
Length = 553
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 425 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 484
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 485 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 530
Query: 174 YYYPLF 179
YYYP +
Sbjct: 531 YYYPYY 536
>gi|348557196|ref|XP_003464406.1| PREDICTED: homeobox protein Nkx-3.2-like [Cavia porcellus]
Length = 336
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 208 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 267
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 268 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 313
Query: 174 YYYPLF 179
YYYP +
Sbjct: 314 YYYPYY 319
>gi|170035845|ref|XP_001845777.1| nk homeobox protein [Culex quinquefasciatus]
gi|167878301|gb|EDS41684.1| nk homeobox protein [Culex quinquefasciatus]
Length = 327
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/95 (69%), Positives = 79/95 (83%), Gaps = 4/95 (4%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T RKKRSRAAFSHAQV+ELE+RF Q+YLSGPERA++AKSL+LTETQVKIWFQNRRYKTK
Sbjct: 208 TTRKKRSRAAFSHAQVFELERRFAQQRYLSGPERAELAKSLRLTETQVKIWFQNRRYKTK 267
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYG 151
RKQ+Q E +L + + K+V V++LVRE YG
Sbjct: 268 RKQIQQHEAALLSAT----KRVPVQVLVREDGSYG 298
>gi|328791797|ref|XP_003251638.1| PREDICTED: thyroid transcription factor 1-like [Apis mellifera]
Length = 342
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 81/99 (81%), Gaps = 8/99 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQVYELE+RF AQKYLSGPERAD+A+ LKLTETQVKIWFQNRRYKTKR+
Sbjct: 182 RKKRSRAAFSHAQVYELERRFAAQKYLSGPERADLARGLKLTETQVKIWFQNRRYKTKRR 241
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYG 157
Q Q L +N+ GN ++VAV++LV HP ++L G
Sbjct: 242 QQQELGALVNS---GNARRVAVRVLV---HP--DEHLRG 272
>gi|350412935|ref|XP_003489822.1| PREDICTED: hypothetical protein LOC100740949 [Bombus impatiens]
Length = 340
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 81/99 (81%), Gaps = 8/99 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQVYELE+RF AQKYLSGPERAD+A+ LKLTETQVKIWFQNRRYKTKR+
Sbjct: 180 RKKRSRAAFSHAQVYELERRFAAQKYLSGPERADLARGLKLTETQVKIWFQNRRYKTKRR 239
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYG 157
Q Q L +N+ GN ++VAV++LV HP ++L G
Sbjct: 240 QQQELGALVNS---GNARRVAVRVLV---HP--DEHLRG 270
>gi|380028721|ref|XP_003698038.1| PREDICTED: homeobox protein Nkx-6.3-like [Apis florea]
Length = 340
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 81/99 (81%), Gaps = 8/99 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQVYELE+RF AQKYLSGPERAD+A+ LKLTETQVKIWFQNRRYKTKR+
Sbjct: 180 RKKRSRAAFSHAQVYELERRFAAQKYLSGPERADLARGLKLTETQVKIWFQNRRYKTKRR 239
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYG 157
Q Q L +N+ GN ++VAV++LV HP ++L G
Sbjct: 240 QQQELGALVNS---GNARRVAVRVLV---HP--DEHLRG 270
>gi|340708584|ref|XP_003392903.1| PREDICTED: hypothetical protein LOC100647922 [Bombus terrestris]
Length = 340
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 81/99 (81%), Gaps = 8/99 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQVYELE+RF AQKYLSGPERAD+A+ LKLTETQVKIWFQNRRYKTKR+
Sbjct: 180 RKKRSRAAFSHAQVYELERRFAAQKYLSGPERADLARGLKLTETQVKIWFQNRRYKTKRR 239
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYG 157
Q Q L +N+ GN ++VAV++LV HP ++L G
Sbjct: 240 QQQELGALVNS---GNARRVAVRVLV---HP--DEHLRG 270
>gi|410038189|ref|XP_003954418.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-3.2, partial
[Pan troglodytes]
Length = 218
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 88/124 (70%), Gaps = 15/124 (12%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 90 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 149
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSLYY 175
Q+ + SA KKVAVK+LVR+ YL G + LLP PS YY
Sbjct: 150 QM----AADLLASAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS-----YY 197
Query: 176 YPLF 179
YP +
Sbjct: 198 YPYY 201
>gi|293341781|ref|XP_001061045.2| PREDICTED: homeobox protein Nkx-3.2-like [Rattus norvegicus]
Length = 401
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 87/123 (70%), Gaps = 13/123 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 273 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 332
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYY 176
Q+ LL SA KKVAVK+LVR+ YL G L PP+ YYY
Sbjct: 333 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEV--LRPPSLLPLQPSYYY 381
Query: 177 PLF 179
P +
Sbjct: 382 PYY 384
>gi|1843592|gb|AAB47764.1| DNA-binding homeodomain protein Bapx1 [Mus musculus]
Length = 333
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 265 QMAADLLA------SAPAAKKVAVKVLVRDDQRL---YLPGEVLRPPSLLPLQPS----- 310
Query: 174 YYYPLF 179
YYYP +
Sbjct: 311 YYYPYY 316
>gi|410957919|ref|XP_003985571.1| PREDICTED: uncharacterized protein LOC101092023 [Felis catus]
Length = 497
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 87/123 (70%), Gaps = 13/123 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 369 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 428
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYY 176
Q+ LL SA KKVAVK+LVR+ YL G L PP+ YYY
Sbjct: 429 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEV--LRPPSLLPLQPSYYY 477
Query: 177 PLF 179
P +
Sbjct: 478 PYY 480
>gi|392353212|ref|XP_003751427.1| PREDICTED: homeobox protein Nkx-3.2-like [Rattus norvegicus]
Length = 347
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 87/123 (70%), Gaps = 13/123 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 219 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 278
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYY 176
Q+ LL SA KKVAVK+LVR+ YL G L PP+ YYY
Sbjct: 279 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEV--LRPPSLLPLQPSYYY 327
Query: 177 PLF 179
P +
Sbjct: 328 PYY 330
>gi|149047301|gb|EDL99970.1| rCG36026 [Rattus norvegicus]
Length = 184
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 56 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 115
Query: 119 QLQ--LLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 116 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 161
Query: 174 YYYPLF 179
YYYP +
Sbjct: 162 YYYPYY 167
>gi|338723742|ref|XP_001499031.3| PREDICTED: homeobox protein Nkx-3.2-like, partial [Equus caballus]
Length = 213
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+
Sbjct: 85 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 144
Query: 119 QL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSL 173
Q+ LL SA KKVAVK+LVR+ YL G + LLP PS
Sbjct: 145 QMAADLLA------SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS----- 190
Query: 174 YYYPLF 179
+YYP +
Sbjct: 191 FYYPYY 196
>gi|307214831|gb|EFN89711.1| Homeobox protein bagpipe [Harpegnathos saltator]
Length = 335
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 81/99 (81%), Gaps = 8/99 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQVYELE+RF AQKYLSGPERAD+A+ LKLTETQVKIWFQNRRYKTKR+
Sbjct: 175 RKKRSRAAFSHAQVYELERRFAAQKYLSGPERADLARGLKLTETQVKIWFQNRRYKTKRR 234
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYG 157
Q Q L +N+ G+ ++VAV++LV HP ++L G
Sbjct: 235 QQQELGALVNS---GSARRVAVRVLV---HP--EEHLRG 265
>gi|146217155|gb|ABQ10641.1| homeodomain protein NK3 [Platynereis dumerilii]
Length = 387
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 88/122 (72%), Gaps = 13/122 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAF+HAQVYELE+RF Q+Y SGPERAD A +LKLTETQ+KIWFQNRRYKTKRK
Sbjct: 263 RKKRSRAAFTHAQVYELERRFAHQRYPSGPERADFAAALKLTETQIKIWFQNRRYKTKRK 322
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP-YGSDYLYGTQGKLLP--PAPSMANSLYY 175
QLQ + SL A + +KVAVK+LV++ Y +D + L P P P M N +Y
Sbjct: 323 QLQ-EQQSL----ANSARKVAVKVLVKDDQKMYATD---DVRPMLYPSVPMPGMLN--FY 372
Query: 176 YP 177
YP
Sbjct: 373 YP 374
>gi|34500369|gb|AAQ73797.1| bagpipe [Drosophila melanogaster]
gi|34500407|gb|AAQ73816.1| bagpipe [Drosophila melanogaster]
gi|34500409|gb|AAQ73817.1| bagpipe [Drosophila melanogaster]
gi|34500415|gb|AAQ73820.1| bagpipe [Drosophila melanogaster]
Length = 382
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|34500399|gb|AAQ73812.1| bagpipe [Drosophila melanogaster]
Length = 382
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|34500373|gb|AAQ73799.1| bagpipe [Drosophila melanogaster]
gi|34500397|gb|AAQ73811.1| bagpipe [Drosophila melanogaster]
gi|34500413|gb|AAQ73819.1| bagpipe [Drosophila melanogaster]
Length = 382
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|34500367|gb|AAQ73796.1| bagpipe [Drosophila melanogaster]
gi|34500385|gb|AAQ73805.1| bagpipe [Drosophila melanogaster]
gi|34500395|gb|AAQ73810.1| bagpipe [Drosophila melanogaster]
gi|34500403|gb|AAQ73814.1| bagpipe [Drosophila melanogaster]
Length = 382
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|164430175|gb|ABY55415.1| bap [Drosophila mauritiana]
Length = 382
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|34500401|gb|AAQ73813.1| bagpipe [Drosophila melanogaster]
gi|34500405|gb|AAQ73815.1| bagpipe [Drosophila melanogaster]
gi|34500411|gb|AAQ73818.1| bagpipe [Drosophila melanogaster]
Length = 386
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|34539066|gb|AAQ74416.1| bagpipe [Drosophila simulans]
gi|164430181|gb|ABY55418.1| bap [Drosophila mauritiana]
gi|188504156|gb|ACD56196.1| BAP [Drosophila simulans]
gi|188504160|gb|ACD56198.1| BAP [Drosophila simulans]
gi|188504162|gb|ACD56199.1| BAP [Drosophila simulans]
Length = 382
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|164430177|gb|ABY55416.1| bap [Drosophila mauritiana]
Length = 382
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|24648745|ref|NP_732637.1| bagpipe [Drosophila melanogaster]
gi|12644164|sp|P22809.3|BAGP_DROME RecName: Full=Homeobox protein bagpipe; AltName: Full=Homeobox
protein NK-3
gi|7300745|gb|AAF55891.1| bagpipe [Drosophila melanogaster]
gi|25012418|gb|AAN71316.1| RE13967p [Drosophila melanogaster]
gi|34500361|gb|AAQ73793.1| bagpipe [Drosophila melanogaster]
gi|34500363|gb|AAQ73794.1| bagpipe [Drosophila melanogaster]
gi|34500365|gb|AAQ73795.1| bagpipe [Drosophila melanogaster]
gi|34500371|gb|AAQ73798.1| bagpipe [Drosophila melanogaster]
gi|34500375|gb|AAQ73800.1| bagpipe [Drosophila melanogaster]
gi|34500377|gb|AAQ73801.1| bagpipe [Drosophila melanogaster]
gi|34500381|gb|AAQ73803.1| bagpipe [Drosophila melanogaster]
gi|34500383|gb|AAQ73804.1| bagpipe [Drosophila melanogaster]
gi|34500387|gb|AAQ73806.1| bagpipe [Drosophila melanogaster]
gi|34500389|gb|AAQ73807.1| bagpipe [Drosophila melanogaster]
gi|34500391|gb|AAQ73808.1| bagpipe [Drosophila melanogaster]
gi|34500393|gb|AAQ73809.1| bagpipe [Drosophila melanogaster]
gi|220942468|gb|ACL83777.1| bap-PA [synthetic construct]
gi|220955706|gb|ACL90396.1| bap-PA [synthetic construct]
Length = 382
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|188504158|gb|ACD56197.1| BAP [Drosophila simulans]
Length = 382
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|34500379|gb|AAQ73802.1| bagpipe [Drosophila melanogaster]
Length = 382
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|322797222|gb|EFZ19410.1| hypothetical protein SINV_04394 [Solenopsis invicta]
Length = 178
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 79/97 (81%), Gaps = 6/97 (6%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
SQ RKKRSRAAFSHAQVYELE+RF AQKYLSGPERAD+A+ LKLTETQVKIWFQNRR
Sbjct: 13 SQSLQNRKKRSRAAFSHAQVYELERRFAAQKYLSGPERADLARGLKLTETQVKIWFQNRR 72
Query: 113 YKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
YKTKR+Q Q L +N+ G+ ++VAV++LV HP
Sbjct: 73 YKTKRRQQQELGALVNS---GSARRVAVRVLV---HP 103
>gi|164430183|gb|ABY55419.1| bap [Drosophila mauritiana]
Length = 382
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|164430179|gb|ABY55417.1| bap [Drosophila mauritiana]
Length = 382
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|195569167|ref|XP_002102582.1| bap [Drosophila simulans]
gi|194198509|gb|EDX12085.1| bap [Drosophila simulans]
Length = 382
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|194899470|ref|XP_001979282.1| GG24598 [Drosophila erecta]
gi|190650985|gb|EDV48240.1| GG24598 [Drosophila erecta]
Length = 382
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|194745240|ref|XP_001955096.1| GF18600 [Drosophila ananassae]
gi|190628133|gb|EDV43657.1| GF18600 [Drosophila ananassae]
Length = 384
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 178 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 237
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 238 QIQQHEAAL----LGASKRVPVQVLVRE 261
>gi|195498524|ref|XP_002096560.1| GE25732 [Drosophila yakuba]
gi|194182661|gb|EDW96272.1| GE25732 [Drosophila yakuba]
Length = 390
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPVQVLVRE 257
>gi|395543029|ref|XP_003773425.1| PREDICTED: homeobox protein Nkx-3.2 [Sarcophilus harrisii]
Length = 382
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 95/147 (64%), Gaps = 23/147 (15%)
Query: 40 KPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
+P + PG + P RKKRSRAAFSHAQV+EL +RFN Q+YLSGPERAD+A SLKL
Sbjct: 235 EPLLCAGGPGEEEPSAPKPRKKRSRAAFSHAQVFELARRFNHQRYLSGPERADLAASLKL 294
Query: 100 TETQVKIWFQNRRYKTKRKQL--QLLEGSLNTPSAGNGKKVAVKILVRES----HPYGSD 153
TETQVKIWFQNRRYKTKR+Q+ LL SA KKVAVK+LVR+ HP
Sbjct: 295 TETQVKIWFQNRRYKTKRRQMAADLLA------SAPAAKKVAVKVLVRDDQRQYHP---- 344
Query: 154 YLYGTQGKLL-PPAPSMANSLYYYPLF 179
G++L PP+ YYYP +
Sbjct: 345 ------GEVLRPPSLLSLQPSYYYPYY 365
>gi|195344426|ref|XP_002038788.1| bap [Drosophila sechellia]
gi|188504164|gb|ACD56200.1| BAP [Drosophila sechellia]
gi|194133809|gb|EDW55325.1| bap [Drosophila sechellia]
Length = 382
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGATKRVPVQVLVRE 257
>gi|304666|gb|AAC37165.1| homeodomain protein [Drosophila melanogaster]
gi|449009|prf||1918270A bagpipe gene
Length = 382
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V +++LVRE
Sbjct: 234 QIQQHEAAL----LGASKRVPIQVLVRE 257
>gi|34539064|gb|AAQ74415.1| bagpipe [Drosophila sechellia]
Length = 382
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 234 QIQQHEAAL----LGATKRVPVQVLVRE 257
>gi|195399674|ref|XP_002058444.1| GJ14311 [Drosophila virilis]
gi|194142004|gb|EDW58412.1| GJ14311 [Drosophila virilis]
Length = 392
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 77/91 (84%), Gaps = 4/91 (4%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AK+L+LTETQVKIWFQNRRYKT
Sbjct: 179 PLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKTLRLTETQVKIWFQNRRYKT 238
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KRKQ+Q E +L + + K+V V++LVRE
Sbjct: 239 KRKQIQQHEAALLSAT----KRVPVQVLVRE 265
>gi|332023751|gb|EGI63975.1| Homeobox protein Nkx-3.2 [Acromyrmex echinatior]
Length = 332
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 75/91 (82%), Gaps = 9/91 (9%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQVYELE+RF AQKYLSGPERAD+A+ LKLTETQVKIWFQNRRYKTKR+
Sbjct: 175 RKKRSRAAFSHAQVYELERRFAAQKYLSGPERADLARGLKLTETQVKIWFQNRRYKTKRR 234
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q Q L S G+ ++VAV++LV HP
Sbjct: 235 QQQALVNS------GSARRVAVRVLV---HP 256
>gi|157638|gb|AAA28618.1| regulatory DNA binding protein, partial [Drosophila melanogaster]
Length = 194
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AKSL+LTETQVKIWFQNRRYKTKRK
Sbjct: 80 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRK 139
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L G K+V V++LVRE
Sbjct: 140 QIQQHEAAL----LGASKRVPVQVLVRE 163
>gi|125773613|ref|XP_001358065.1| GA20672 [Drosophila pseudoobscura pseudoobscura]
gi|54637800|gb|EAL27202.1| GA20672 [Drosophila pseudoobscura pseudoobscura]
Length = 380
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AK+L+LTETQVKIWFQNRRYKTKRK
Sbjct: 184 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKTLRLTETQVKIWFQNRRYKTKRK 243
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E ++ G K+V V++LVRE
Sbjct: 244 QIQQHEAAM----LGATKRVPVQVLVRE 267
>gi|195166214|ref|XP_002023930.1| GL27337 [Drosophila persimilis]
gi|194106090|gb|EDW28133.1| GL27337 [Drosophila persimilis]
Length = 380
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 75/88 (85%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AK+L+LTETQVKIWFQNRRYKTKRK
Sbjct: 184 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKTLRLTETQVKIWFQNRRYKTKRK 243
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E ++ G K+V V++LVRE
Sbjct: 244 QIQQHEAAM----LGATKRVPVQVLVRE 267
>gi|32816231|gb|AAP88431.1| NK-3 homeobox protein [Nematostella vectensis]
Length = 257
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/119 (59%), Positives = 84/119 (70%), Gaps = 11/119 (9%)
Query: 28 GKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSG 87
K+ IR R+ SN Q Q R+KRSRAAFSH QV+ELE+RF+ QKYLSG
Sbjct: 104 AKEQIRSEREA------SNTSPSNQQQKSKPRRKRSRAAFSHQQVFELERRFSHQKYLSG 157
Query: 88 PERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
PERAD+A +LKLTETQVKIWFQNRRYKTKR+Q L + PSA KKVAV++LVR+
Sbjct: 158 PERADLAAALKLTETQVKIWFQNRRYKTKRRQ---LASEICPPSA--AKKVAVRVLVRD 211
>gi|156382149|ref|XP_001632417.1| predicted protein [Nematostella vectensis]
gi|156219472|gb|EDO40354.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/119 (59%), Positives = 84/119 (70%), Gaps = 11/119 (9%)
Query: 28 GKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSG 87
K+ IR R+ SN Q Q R+KRSRAAFSH QV+ELE+RF+ QKYLSG
Sbjct: 104 AKEQIRSEREA------SNTSPSNQQQKSKPRRKRSRAAFSHQQVFELERRFSHQKYLSG 157
Query: 88 PERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
PERAD+A +LKLTETQVKIWFQNRRYKTKR+Q L + PSA KKVAV++LVR+
Sbjct: 158 PERADLAAALKLTETQVKIWFQNRRYKTKRRQ---LASEICPPSA--AKKVAVRVLVRD 211
>gi|195113857|ref|XP_002001484.1| GI21951 [Drosophila mojavensis]
gi|193918078|gb|EDW16945.1| GI21951 [Drosophila mojavensis]
Length = 382
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 76/88 (86%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AK+L+LTETQVKIWFQNRRYKTKRK
Sbjct: 174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKTLRLTETQVKIWFQNRRYKTKRK 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L + + K+V V++LVRE
Sbjct: 234 QIQQHEAALLSAT----KRVPVQVLVRE 257
>gi|195053904|ref|XP_001993866.1| GH22032 [Drosophila grimshawi]
gi|193895736|gb|EDV94602.1| GH22032 [Drosophila grimshawi]
Length = 406
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 76/88 (86%), Gaps = 4/88 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AK+L+LTETQVKIWFQNRRYKTKRK
Sbjct: 199 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKTLRLTETQVKIWFQNRRYKTKRK 258
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L + + K+V V++LVRE
Sbjct: 259 QIQQHEAALLSAT----KRVPVQVLVRE 282
>gi|195454286|ref|XP_002074172.1| GK14503 [Drosophila willistoni]
gi|194170257|gb|EDW85158.1| GK14503 [Drosophila willistoni]
Length = 399
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 74/88 (84%), Gaps = 3/88 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF Q+YLSGPER+++AK+L+LTETQVKIWFQNRRYKTKRK
Sbjct: 189 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKTLRLTETQVKIWFQNRRYKTKRK 248
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
Q+Q E +L K+V V++LVRE
Sbjct: 249 QIQQHEAAL---LGAATKRVPVQVLVRE 273
>gi|294774328|dbj|BAJ05621.1| Bapx1 homolog [Lethenteron camtschaticum]
Length = 314
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 96/165 (58%), Gaps = 29/165 (17%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A +LKLTETQVKIWFQNRRYKTKR+
Sbjct: 144 RKKRSRAAFSHAQVFELERRFNQQRYLSGPERADLAAALKLTETQVKIWFQNRRYKTKRR 203
Query: 119 QLQL-----------------LEGSLNTPSAGNGKKVAVKILVRESH---------PYGS 152
QL L G G+ KKVAVK+LVR+
Sbjct: 204 QLGLGPAGAAELHAGGGGGGGGGGGGAGGGGGSAKKVAVKVLVRDDQRLQQQQQQHHQHH 263
Query: 153 DYLYGTQGKL-LPPAPSMANSLYYYPLFYNMHSLYGTQGKLLPPA 196
+ YG L PP+ ++ +L Y+P Y + + LL PA
Sbjct: 264 QHHYGAAETLAFPPSLALYQTLRYFPAPYALQPAW--PASLLQPA 306
>gi|348529035|ref|XP_003452020.1| PREDICTED: homeobox protein zampogna-like [Oreochromis niloticus]
Length = 259
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 78/99 (78%), Gaps = 7/99 (7%)
Query: 48 PGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIW 107
P Q +P G KKRSR+AFSHAQV+ELE+RF+ Q+YLSGPERAD+A +LKLTETQVKIW
Sbjct: 120 PDAQQCRP--GAKKRSRSAFSHAQVHELERRFSTQRYLSGPERADLAGALKLTETQVKIW 177
Query: 108 FQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
FQNRRYKTKR+Q+ ++P KKVAVK+LVR+
Sbjct: 178 FQNRRYKTKRRQMAAELAVCSSP-----KKVAVKVLVRD 211
>gi|2062672|gb|AAC08705.1| Nkx-3.3 [Pleurodeles waltl]
Length = 262
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 91/141 (64%), Gaps = 18/141 (12%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQV 104
S PGL P KKRSRAAFSHAQVYELE+RF+ Q+YLSGPERA +A SLKLTETQV
Sbjct: 123 SCPPGL-----PRPAKKRSRAAFSHAQVYELERRFSLQRYLSGPERAALAASLKLTETQV 177
Query: 105 KIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLP 164
KIWFQNRRYKTKRKQ + + P ++VA+++LVR+ D L +
Sbjct: 178 KIWFQNRRYKTKRKQ----KAAQLCPGPSPARRVAIRVLVRD------DQLQSGPEEAPR 227
Query: 165 PAP---SMANSLYYYPLFYNM 182
P+P S+ + +YYP Y +
Sbjct: 228 PSPPGLSLYQACHYYPYMYCL 248
>gi|301615560|ref|XP_002937227.1| PREDICTED: homeobox protein zampogna-like [Xenopus (Silurana)
tropicalis]
Length = 241
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 86/129 (66%), Gaps = 11/129 (8%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P KKRSRAAFSHAQVYELE+RF+ Q+YLSGPERAD+A +LKLTETQVKIWFQNRRYKT
Sbjct: 113 PKSSKKRSRAAFSHAQVYELERRFSLQRYLSGPERADLAAALKLTETQVKIWFQNRRYKT 172
Query: 116 KRKQLQLLEGSLNTP--SAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSL 173
KRK L + P S +KVAV++LV++ Y + L P S+ ++
Sbjct: 173 KRK----LIATQTAPKSSLAPARKVAVRVLVKDDQ-----RQYCPEDILNPSLLSLYHAY 223
Query: 174 YYYPLFYNM 182
YYP Y +
Sbjct: 224 QYYPYMYCL 232
>gi|61651802|ref|NP_001013342.1| NK3 homeobox 3 [Danio rerio]
gi|60416051|gb|AAH90785.1| Zgc:113257 [Danio rerio]
gi|182888842|gb|AAI64284.1| Zgc:113257 protein [Danio rerio]
Length = 149
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 82/128 (64%), Gaps = 7/128 (5%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P KKRSRAAFSHAQVYEL +RFN Q+YLSGPERAD+A +LKLTETQVKIWFQNRRYKT
Sbjct: 16 PKSSKKRSRAAFSHAQVYELARRFNLQRYLSGPERADLAGALKLTETQVKIWFQNRRYKT 75
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYY 175
KR+Q+ + T K+VAVK+LVR Y T+ P P + S Y
Sbjct: 76 KRRQMAAELATTPT--TTLAKRVAVKVLVRNDQ-----RQYNTEDLPSPSVPPLYQSFPY 128
Query: 176 YPLFYNMH 183
YP +
Sbjct: 129 YPYMFCFQ 136
>gi|148231287|ref|NP_001079154.1| homeobox protein zampogna [Xenopus laevis]
gi|82228200|sp|O93590.1|ZAX_XENLA RecName: Full=Homeobox protein zampogna; AltName: Full=Xzax
gi|3747121|gb|AAC64197.1| homeodomain protein zampogna [Xenopus laevis]
Length = 224
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 87/129 (67%), Gaps = 11/129 (8%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P KKRSRAAFSHAQVYELE+RF+ Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 96 PKSSKKRSRAAFSHAQVYELERRFSLQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 155
Query: 116 KRKQL--QLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSL 173
KRK + Q S P+ +KVAV++LV++ Y + L P S+ ++
Sbjct: 156 KRKLIATQTAPKSSLVPT----RKVAVRVLVKDDQ-----RQYCPEDMLSPSLLSLYHAY 206
Query: 174 YYYPLFYNM 182
YYP Y +
Sbjct: 207 QYYPYMYCL 215
>gi|390342340|ref|XP_784735.3| PREDICTED: uncharacterized protein LOC579532 [Strongylocentrotus
purpuratus]
Length = 423
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 75/97 (77%), Gaps = 5/97 (5%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
QS RKKRSRAAFSHAQV+ELE+RF+ Q+YLSGPERAD+A +LKLTE QVKIWFQN
Sbjct: 274 VQSSSSKTRKKRSRAAFSHAQVFELERRFSHQRYLSGPERADLAGALKLTEQQVKIWFQN 333
Query: 111 RRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
RRYKTKRKQ+ ++ S KKVAVK+L ++S
Sbjct: 334 RRYKTKRKQM-----AVEMMSPLPAKKVAVKVLFKDS 365
>gi|432905290|ref|XP_004077432.1| PREDICTED: homeobox protein zampogna-like [Oryzias latipes]
Length = 240
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 74/89 (83%), Gaps = 6/89 (6%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G KKRSRAAFSH QV+ELE+RF+AQ+YLSGPERAD+A++LKLTETQVKIWFQNRRYKTKR
Sbjct: 111 GTKKRSRAAFSHTQVHELERRFSAQRYLSGPERADLAEALKLTETQVKIWFQNRRYKTKR 170
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
+Q+ +LN K V+VK+LVR+
Sbjct: 171 RQVAAEVAALNP------KTVSVKVLVRD 193
>gi|301622949|ref|XP_002940787.1| PREDICTED: homeobox protein Nkx-3.2-like [Xenopus (Silurana)
tropicalis]
Length = 329
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 63/67 (94%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+PP RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRY
Sbjct: 196 EPPKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRY 255
Query: 114 KTKRKQL 120
KTKR+Q+
Sbjct: 256 KTKRRQM 262
>gi|147901588|ref|NP_001079282.1| homeobox protein Nkx-3.2 [Xenopus laevis]
gi|82228326|sp|P70061.1|NKX32_XENLA RecName: Full=Homeobox protein Nkx-3.2; AltName: Full=Bagpipe
homeobox protein homolog 1; AltName: Full=Xbap
gi|2580453|gb|AAB82336.1| Xbap [Xenopus laevis]
Length = 329
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 63/67 (94%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+PP RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRY
Sbjct: 196 EPPKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRY 255
Query: 114 KTKRKQL 120
KTKR+Q+
Sbjct: 256 KTKRRQM 262
>gi|165979109|gb|ABY77000.1| Bapx1 [Petromyzon marinus]
Length = 241
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 72/102 (70%), Gaps = 16/102 (15%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A +LKLTETQVKIWFQNRRYK KR+
Sbjct: 140 RKKRSRAAFSHAQVFELERRFNQQRYLSGPERADLAAALKLTETQVKIWFQNRRYKAKRR 199
Query: 119 QLQL----------------LEGSLNTPSAGNGKKVAVKILV 144
QL L G G+ KKVAVK+LV
Sbjct: 200 QLGLGPAGASELHAGGGGGGGGGGGAGGGGGSAKKVAVKVLV 241
>gi|449501251|ref|XP_002192724.2| PREDICTED: homeobox protein Nkx-3.2 [Taeniopygia guttata]
Length = 240
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 109 PKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 168
Query: 116 KRKQL 120
KR+Q+
Sbjct: 169 KRRQM 173
>gi|405978292|gb|EKC42697.1| Homeobox protein Nkx-3.2 [Crassostrea gigas]
Length = 231
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 74/97 (76%), Gaps = 6/97 (6%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
+ Q P RKKRSRAAFSHAQV+ELE+RF Q+YLSGPERAD+A +LKLTETQ+KIWFQ
Sbjct: 106 VKQVIPCKPRKKRSRAAFSHAQVFELERRFRHQRYLSGPERADLANALKLTETQIKIWFQ 165
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
NRRYKTKR+Q+Q + LN KK V +L+++
Sbjct: 166 NRRYKTKRRQIQ-EQSCLNA-----AKKADVTLLIKD 196
>gi|208401108|gb|ACI26670.1| NK-like homeobox protein 3 [Capitella teleta]
Length = 190
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 81/99 (81%), Gaps = 5/99 (5%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
++S P RKKRSRAAFSHAQV+ELE+RF+ Q+YLS PERAD+A+ LKLTETQVK+WFQN
Sbjct: 58 SRSSSPKPRKKRSRAAFSHAQVFELERRFSHQRYLSAPERADLAQVLKLTETQVKVWFQN 117
Query: 111 RRYKTKRKQLQLLEGSLN---TPSAGNGKKVAVKILVRE 146
RRYKTKRKQLQ + ++ P+A +KVAV++L+R+
Sbjct: 118 RRYKTKRKQLQQEQQAVQHHGVPTA--ARKVAVQVLIRD 154
>gi|241839229|ref|XP_002415226.1| nk homeobox protein, putative [Ixodes scapularis]
gi|215509438|gb|EEC18891.1| nk homeobox protein, putative [Ixodes scapularis]
Length = 134
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 88/130 (67%), Gaps = 12/130 (9%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
+KKR RAAFSHAQVYELE+RF+ Q+YLSGPERAD+A +LKLTETQVKIWFQNRRYKTKR
Sbjct: 2 SKKKRCRAAFSHAQVYELERRFSHQRYLSGPERADLAHALKLTETQVKIWFQNRRYKTKR 61
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESH-PYGSDYLYGTQGKLLP--PAPSMANSLY 174
+Q Q + S S G + +VK+LVR+ Y D + LLP P P +
Sbjct: 62 RQGQECDLSPALVSPG-CRTASVKVLVRDDQLVYRRDEVVRP-AVLLPSVPLPGL----- 114
Query: 175 YYPLF-YNMH 183
YPL+ Y+ H
Sbjct: 115 -YPLYAYHRH 123
>gi|2062670|gb|AAC08704.1| Nkx-3.2 [Pleurodeles waltl]
Length = 275
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 63/71 (88%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G ++ P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWF
Sbjct: 136 GAPRTAGPQQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWF 195
Query: 109 QNRRYKTKRKQ 119
QNRRYKTKR+Q
Sbjct: 196 QNRRYKTKRRQ 206
>gi|5822957|gb|AAD52999.1|AF138905_1 NK class homeodomain transcription factor NKX3.2 [Gallus gallus]
gi|5902630|gb|AAD55579.1|AF179482_1 homeobox protein NKX3.2 [Gallus gallus]
Length = 276
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 146 PKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 205
Query: 116 KRKQL 120
KR+Q+
Sbjct: 206 KRRQM 210
>gi|319803040|ref|NP_989468.1| NK3 homeobox 2 [Gallus gallus]
gi|13536995|dbj|BAB40713.1| NK class homeoprotein Nkx-3.2 [Gallus gallus]
Length = 276
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 146 PKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 205
Query: 116 KRKQL 120
KR+Q+
Sbjct: 206 KRRQM 210
>gi|260830973|ref|XP_002610434.1| nk homeobox 3 [Branchiostoma floridae]
gi|229295800|gb|EEN66444.1| nk homeobox 3 [Branchiostoma floridae]
Length = 267
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 60/62 (96%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RF+ Q+YLSGPERAD+A +LKLTETQVKIWFQNRRYKTKR+
Sbjct: 137 RKKRSRAAFSHAQVFELERRFSHQRYLSGPERADLAAALKLTETQVKIWFQNRRYKTKRR 196
Query: 119 QL 120
Q+
Sbjct: 197 QM 198
>gi|165979111|gb|ABY77001.1| Bapx1 [Scyliorhinus canicula]
Length = 209
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/60 (86%), Positives = 56/60 (93%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKT
Sbjct: 150 PKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKT 209
>gi|351703113|gb|EHB06032.1| Homeobox protein Nkx-3.1 [Heterocephalus glaber]
Length = 235
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/99 (62%), Positives = 71/99 (71%), Gaps = 5/99 (5%)
Query: 39 PKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK 98
P P AL +LP Q P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LK
Sbjct: 109 PSPGALPSLP-----QTPKQTQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLK 163
Query: 99 LTETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKK 137
LTETQVKIWFQNRRYKTKRKQL G L S+ G +
Sbjct: 164 LTETQVKIWFQNRRYKTKRKQLSSDLGDLEKHSSPPGPR 202
>gi|443696364|gb|ELT97082.1| hypothetical protein CAPTEDRAFT_79432, partial [Capitella teleta]
Length = 90
Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats.
Identities = 62/90 (68%), Positives = 76/90 (84%), Gaps = 5/90 (5%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KKRSRAAFSHAQV+ELE+RF+ Q+YLS PERAD+A+ LKLTETQVKIWFQNRRYKTKRKQ
Sbjct: 1 KKRSRAAFSHAQVFELERRFSHQRYLSAPERADLAQVLKLTETQVKIWFQNRRYKTKRKQ 60
Query: 120 LQLLEGSL---NTPSAGNGKKVAVKILVRE 146
LQ + ++ P+A +KVAVK+L+R+
Sbjct: 61 LQQEQQAVQHHGVPTA--ARKVAVKVLIRD 88
>gi|426220054|ref|XP_004004232.1| PREDICTED: homeobox protein Nkx-3.1 [Ovis aries]
Length = 246
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 88/142 (61%), Gaps = 25/142 (17%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P+AL +LP A QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLT
Sbjct: 122 PSALQSLPP-ATKQP----QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLT 176
Query: 101 ETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQG 160
ETQVKIWFQNRRYKTKRKQL G+L K ++ L E +QG
Sbjct: 177 ETQVKIWFQNRRYKTKRKQLTSDLGTLE-------KHSSLPALKEEGF---------SQG 220
Query: 161 KLLPPAPSMANSLYYYPLFYNM 182
L+ S+ N+ YYP Y +
Sbjct: 221 SLI----SVHNTYPYYPYIYCL 238
>gi|345306497|ref|XP_001507333.2| PREDICTED: hypothetical protein LOC100075889 [Ornithorhynchus
anatinus]
Length = 398
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 85/138 (61%), Gaps = 23/138 (16%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQV 104
S PGL Q+Q + KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQV
Sbjct: 276 SAFPGLPQTQ---KQPKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQV 332
Query: 105 KIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLP 164
KIWFQNRRYKTKRKQL G L+ S G K + L R S L+
Sbjct: 333 KIWFQNRRYKTKRKQLTSDLGDLDPNSTLPGLK--EESLSRTS--------------LI- 375
Query: 165 PAPSMANSLYYYPLFYNM 182
SM NS YYP FY +
Sbjct: 376 ---SMYNSYPYYPYFYCL 390
>gi|321475663|gb|EFX86625.1| hypothetical protein DAPPUDRAFT_25304 [Daphnia pulex]
Length = 144
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKKRSRAAFSH QV+ELE+RF QKYLSGPERAD+A+ LKLTETQVKIWFQNRRYKTKR
Sbjct: 83 GRKKRSRAAFSHGQVFELERRFGHQKYLSGPERADLAQMLKLTETQVKIWFQNRRYKTKR 142
Query: 118 KQ 119
+Q
Sbjct: 143 RQ 144
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 46/59 (77%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
K++ R FS AQVYELE+RF Q+YLS PER ++ LKLT TQVKIWFQNRRYK KR+
Sbjct: 3 KRKPRVLFSQAQVYELERRFKQQRYLSAPEREHLSLVLKLTPTQVKIWFQNRRYKCKRQ 61
>gi|350592292|ref|XP_003483439.1| PREDICTED: homeobox protein Nkx-3.1-like [Sus scrofa]
Length = 247
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 64/77 (83%), Gaps = 2/77 (2%)
Query: 46 NLPGLAQSQPPTGRK--KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
N PG S PPT ++ KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQ
Sbjct: 121 NTPGALPSLPPTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQ 180
Query: 104 VKIWFQNRRYKTKRKQL 120
VKIWFQNRRYKTKRKQL
Sbjct: 181 VKIWFQNRRYKTKRKQL 197
>gi|355749170|gb|EHH53569.1| Homeobox protein NK-3-like protein B, partial [Macaca fascicularis]
Length = 184
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%), Gaps = 2/73 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYK +R+
Sbjct: 84 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKDQRQ 143
Query: 119 QLQLLEGSLNTPS 131
L G L PS
Sbjct: 144 YLP--GGVLRPPS 154
>gi|300793776|ref|NP_001178084.1| homeobox protein Nkx-3.1 [Bos taurus]
gi|296484589|tpg|DAA26704.1| TPA: NK3 homeobox 1-like [Bos taurus]
Length = 243
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 88/142 (61%), Gaps = 25/142 (17%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P+AL +LP A QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLT
Sbjct: 119 PSALQSLPP-ATKQP----QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLT 173
Query: 101 ETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQG 160
ETQVKIWFQNRRYKTKRKQL G+L K ++ L E +QG
Sbjct: 174 ETQVKIWFQNRRYKTKRKQLTSDLGNLE-------KHSSLPALKEEGF---------SQG 217
Query: 161 KLLPPAPSMANSLYYYPLFYNM 182
L+ S+ N+ YYP Y +
Sbjct: 218 SLI----SVHNTYPYYPYVYCL 235
>gi|440903384|gb|ELR54053.1| Homeobox protein Nkx-3.1 [Bos grunniens mutus]
Length = 251
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 85/139 (61%), Gaps = 22/139 (15%)
Query: 46 NLPGLAQSQPPTGRK--KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
N P QS PP ++ KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQ
Sbjct: 125 NPPSALQSLPPATKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQ 184
Query: 104 VKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLL 163
VKIWFQNRRYKTKRKQL G+L K ++ L E +QG L+
Sbjct: 185 VKIWFQNRRYKTKRKQLTSDLGNLE-------KHSSLPALKEEGF---------SQGSLI 228
Query: 164 PPAPSMANSLYYYPLFYNM 182
S+ N+ YYP Y +
Sbjct: 229 ----SVHNTYPYYPYVYCL 243
>gi|348587918|ref|XP_003479714.1| PREDICTED: homeobox protein Nkx-3.1-like [Cavia porcellus]
Length = 265
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 67/82 (81%), Gaps = 5/82 (6%)
Query: 39 PKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK 98
P P AL +LP A+ QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +A++LK
Sbjct: 139 PSPGALPSLPQTAK-QP----QKRSRAAFSHTQVLELERKFSHQKYLSAPERAHLARNLK 193
Query: 99 LTETQVKIWFQNRRYKTKRKQL 120
LTETQVKIWFQNRRYKTKRKQL
Sbjct: 194 LTETQVKIWFQNRRYKTKRKQL 215
>gi|338722424|ref|XP_001491292.3| PREDICTED: homeobox protein Nkx-3.1-like [Equus caballus]
Length = 185
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 64/79 (81%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKIWFQNRRY
Sbjct: 69 QPSKQPQKRSRAAFSHTQVIELERKFSRQKYLSAPERAHLAKNLKLTETQVKIWFQNRRY 128
Query: 114 KTKRKQLQLLEGSLNTPSA 132
KTKRKQL G+L PS+
Sbjct: 129 KTKRKQLSSDLGNLEKPSS 147
>gi|301605997|ref|XP_002932598.1| PREDICTED: homeobox protein koza [Xenopus (Silurana) tropicalis]
Length = 211
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 65/78 (83%), Gaps = 7/78 (8%)
Query: 50 LAQSQP--PTGRK-----KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTET 102
L Q+QP P +K KRSRAAFSH+QV ELE++F++QKYLS PERA +AKSLKLTET
Sbjct: 83 LDQAQPISPVEKKLKLQQKRSRAAFSHSQVIELERKFSSQKYLSAPERAQLAKSLKLTET 142
Query: 103 QVKIWFQNRRYKTKRKQL 120
QVKIWFQNRRYKTKRKQL
Sbjct: 143 QVKIWFQNRRYKTKRKQL 160
>gi|148236105|ref|NP_001079169.1| homeobox protein koza [Xenopus laevis]
gi|82248853|sp|Q9W7E8.1|KOZA_XENLA RecName: Full=Homeobox protein koza; AltName: Full=Homeodomain
transcription factor koza
gi|5059067|gb|AAD38901.1|AF127225_1 homeodomain transcription factor koza [Xenopus laevis]
Length = 213
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 10/121 (8%)
Query: 3 SMKDSEEYY--KKINNNNITNNTMSYYGKKDIRDARDLPKP-AALSNLPGLAQSQPPTGR 59
S++D+EE Y +K+ +++ + + D D +P A+ N LA+ Q
Sbjct: 49 SLRDTEEKYASEKLQSSSQPAEIHHSHMEADENLELDTAQPITAVEN--KLAKQQ----- 101
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+KRSRAAFSH+QV ELE++F++QKYLS PERA +AKSLKLTETQVKIWFQNRRYKTKRKQ
Sbjct: 102 QKRSRAAFSHSQVIELERKFSSQKYLSAPERAQLAKSLKLTETQVKIWFQNRRYKTKRKQ 161
Query: 120 L 120
L
Sbjct: 162 L 162
>gi|358254626|dbj|GAA55962.1| homeobox protein bagpipe [Clonorchis sinensis]
Length = 473
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 59/63 (93%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
RKKR+RAAFSHAQV+ELE+RF Q+YLS PERA++A+SL+L+ETQVKIWFQNRRYKTK+
Sbjct: 246 SRKKRTRAAFSHAQVFELERRFTYQRYLSAPERAELARSLRLSETQVKIWFQNRRYKTKK 305
Query: 118 KQL 120
+QL
Sbjct: 306 RQL 308
>gi|410901371|ref|XP_003964169.1| PREDICTED: homeobox protein zampogna-like [Takifugu rubripes]
Length = 229
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 86/123 (69%), Gaps = 17/123 (13%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
K+R+RAAF++AQ+++LE+RFNAQ+YLSGPERAD+A +LKLTETQVKIWFQNRRYKTKR++
Sbjct: 105 KRRTRAAFTYAQIFQLERRFNAQQYLSGPERADLADTLKLTETQVKIWFQNRRYKTKRRR 164
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVR--ESHPYGSDYLYGTQGKLLPPAPSMANSLYYYP 177
+ + E ++ P + A+++LVR ++ P S G LP + + +YP
Sbjct: 165 M-MSEFTI-VP------RKALRVLVRDNQTCPQAS-------GMRLPVTSPLYQAYQHYP 209
Query: 178 LFY 180
+
Sbjct: 210 CMH 212
>gi|1890106|gb|AAB49696.1| homeodomain-containing BAPX1 [Homo sapiens]
Length = 60
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/60 (88%), Positives = 58/60 (96%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+Q
Sbjct: 1 KKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQ 60
>gi|355779574|gb|EHH64050.1| Homeobox protein NK-3-like protein A, partial [Macaca fascicularis]
Length = 152
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 63/75 (84%), Gaps = 2/75 (2%)
Query: 46 NLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105
+LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVK
Sbjct: 30 SLPSLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 87
Query: 106 IWFQNRRYKTKRKQL 120
IWFQNRRYKTKRKQL
Sbjct: 88 IWFQNRRYKTKRKQL 102
>gi|213510926|ref|NP_001134541.1| Homeobox protein Nkx-3.1 [Salmo salar]
gi|209734144|gb|ACI67941.1| Homeobox protein Nkx-3.1 [Salmo salar]
Length = 202
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 68/95 (71%), Gaps = 7/95 (7%)
Query: 25 SYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKY 84
++ +KD+ D+ P A+ + G++KRSRAAF+H QV ELEK+FN QKY
Sbjct: 62 AFEARKDLFDSSCSSTPDAMIRFTSV-------GKQKRSRAAFTHLQVLELEKKFNHQKY 114
Query: 85 LSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
LS PERA++A +L LTETQVKIWFQNRRYKTKRKQ
Sbjct: 115 LSAPERANLANTLGLTETQVKIWFQNRRYKTKRKQ 149
>gi|402877777|ref|XP_003902593.1| PREDICTED: homeobox protein Nkx-3.1 [Papio anubis]
Length = 232
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 63/75 (84%), Gaps = 2/75 (2%)
Query: 46 NLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105
+LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVK
Sbjct: 110 SLPSLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 167
Query: 106 IWFQNRRYKTKRKQL 120
IWFQNRRYKTKRKQL
Sbjct: 168 IWFQNRRYKTKRKQL 182
>gi|148233790|ref|NP_001080207.1| NK3 homeobox 1 [Xenopus laevis]
gi|28838489|gb|AAH47968.1| Nkx3-1 protein [Xenopus laevis]
gi|54648525|gb|AAH85075.1| Nkx3-1-prov protein [Xenopus laevis]
Length = 213
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 59/62 (95%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++KRSRAAFSH+QV ELE++F++QKYLS PERA +AKSLKLTETQVKIWFQNRRYKTKRK
Sbjct: 101 QQKRSRAAFSHSQVIELERKFSSQKYLSAPERAQLAKSLKLTETQVKIWFQNRRYKTKRK 160
Query: 119 QL 120
QL
Sbjct: 161 QL 162
>gi|388452355|ref|NP_001253152.1| homeobox protein Nkx-3.1 [Macaca mulatta]
gi|387541780|gb|AFJ71517.1| homeobox protein Nkx-3.1 [Macaca mulatta]
Length = 232
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 63/75 (84%), Gaps = 2/75 (2%)
Query: 46 NLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105
+LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVK
Sbjct: 110 SLPSLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 167
Query: 106 IWFQNRRYKTKRKQL 120
IWFQNRRYKTKRKQL
Sbjct: 168 IWFQNRRYKTKRKQL 182
>gi|355697805|gb|EHH28353.1| Homeobox protein NK-3-like protein A [Macaca mulatta]
Length = 232
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 63/75 (84%), Gaps = 2/75 (2%)
Query: 46 NLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105
+LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVK
Sbjct: 110 SLPSLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 167
Query: 106 IWFQNRRYKTKRKQL 120
IWFQNRRYKTKRKQL
Sbjct: 168 IWFQNRRYKTKRKQL 182
>gi|355707383|gb|AES02943.1| NK3 homeobox 1 [Mustela putorius furo]
Length = 137
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 64/77 (83%), Gaps = 6/77 (7%)
Query: 46 NLPGLAQS--QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
+LP L Q+ QP +KRSRAAFSH QV ELEK+F+ QKYLS PERA +AK+LKLTETQ
Sbjct: 16 SLPSLPQTSKQP----QKRSRAAFSHTQVIELEKKFSHQKYLSAPERAHLAKNLKLTETQ 71
Query: 104 VKIWFQNRRYKTKRKQL 120
VKIWFQNRRYKTKRKQL
Sbjct: 72 VKIWFQNRRYKTKRKQL 88
>gi|431909506|gb|ELK12822.1| Homeobox protein Nkx-3.1 [Pteropus alecto]
Length = 238
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP + ++ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 117 LPSVPET--PKQPQKRSRAAFSHTQVVELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 174
Query: 107 WFQNRRYKTKRKQLQLLEGSLNTPSA 132
WFQNRRYKTKRKQL G L PS+
Sbjct: 175 WFQNRRYKTKRKQLTSDLGGLEKPSS 200
>gi|432874575|ref|XP_004072522.1| PREDICTED: homeobox protein Nkx-3.1-like [Oryzias latipes]
Length = 188
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 57/63 (90%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
TG++KRSRAAF+H QV ELEK+FN QKYLS PERA +A SL+LTETQVKIWFQNRRYKTK
Sbjct: 74 TGKQKRSRAAFTHLQVLELEKKFNHQKYLSAPERAHLATSLRLTETQVKIWFQNRRYKTK 133
Query: 117 RKQ 119
RKQ
Sbjct: 134 RKQ 136
>gi|449267690|gb|EMC78603.1| Homeobox protein Nkx-3.1, partial [Columba livia]
Length = 211
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 64/82 (78%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
+Q P KRSRAAFSH QV ELE++F+ QKYLS PERA +AK L+LTETQVKIWFQNRR
Sbjct: 96 AQCPPKAAKRSRAAFSHTQVLELERKFSRQKYLSAPERARLAKHLQLTETQVKIWFQNRR 155
Query: 113 YKTKRKQLQLLEGSLNTPSAGN 134
YKTKRKQ+ G +T +AG+
Sbjct: 156 YKTKRKQIASESGGTDTDAAGH 177
>gi|403292378|ref|XP_003937225.1| PREDICTED: homeobox protein Nkx-3.1 [Saimiri boliviensis
boliviensis]
Length = 223
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 80/124 (64%), Gaps = 9/124 (7%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 102 LPSLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 159
Query: 107 WFQNRRYKTKRKQLQLLEGSLNTPSAGNGKK-----VAVKILVRESHPYGSDYLYGTQGK 161
WFQNRRYKTKRKQL G L S+ K A + V S+PY YLY G
Sbjct: 160 WFQNRRYKTKRKQLSSELGGLEKHSSLPALKEEAFSRASLVSVYNSYPY-YPYLYCV-GS 217
Query: 162 LLPP 165
PP
Sbjct: 218 WSPP 221
>gi|296221751|ref|XP_002756882.1| PREDICTED: homeobox protein Nkx-3.1 [Callithrix jacchus]
Length = 223
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 78/115 (67%), Gaps = 8/115 (6%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 102 LPSLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 159
Query: 107 WFQNRRYKTKRKQLQLLEGSLNTPSAGNGKK-----VAVKILVRESHPYGSDYLY 156
WFQNRRYKTKRKQL G L ++ + K A + V S+PY YLY
Sbjct: 160 WFQNRRYKTKRKQLSSELGDLEKRASSSALKEEAFSRASLVSVYNSYPY-YPYLY 213
>gi|348530450|ref|XP_003452724.1| PREDICTED: homeobox protein Nkx-3.1-like [Oreochromis niloticus]
Length = 194
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 65/76 (85%), Gaps = 1/76 (1%)
Query: 45 SNLPGLAQSQPPT-GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
++ P ++S P+ G++KRSRAAF+H QV ELEK+FN QKYLS PERA +A++L+LTETQ
Sbjct: 67 TSCPSSSESTLPSPGKQKRSRAAFTHLQVLELEKKFNHQKYLSAPERAQLARTLRLTETQ 126
Query: 104 VKIWFQNRRYKTKRKQ 119
VKIWFQNRRYKTKRKQ
Sbjct: 127 VKIWFQNRRYKTKRKQ 142
>gi|291385901|ref|XP_002709512.1| PREDICTED: NK3 homeobox 1 [Oryctolagus cuniculus]
Length = 241
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 64/80 (80%), Gaps = 6/80 (7%)
Query: 43 ALSNLPGLAQS--QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
A LP L Q+ QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLT
Sbjct: 116 AAGTLPSLPQTAKQP----QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLT 171
Query: 101 ETQVKIWFQNRRYKTKRKQL 120
ETQVKIWFQNRRYKTKRKQL
Sbjct: 172 ETQVKIWFQNRRYKTKRKQL 191
>gi|417397581|gb|JAA45824.1| Putative transcription factor tinman/nkx2-3 [Desmodus rotundus]
Length = 234
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 48 PGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIW 107
P L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKIW
Sbjct: 114 PSLPQA--PKQPQKRSRAAFSHTQVVELERKFSHQKYLSAPERAHLAKNLKLTETQVKIW 171
Query: 108 FQNRRYKTKRKQLQLLEGSLN 128
FQNRRYKTKRKQL GSL
Sbjct: 172 FQNRRYKTKRKQLTSDLGSLE 192
>gi|373432628|ref|NP_001243268.1| homeobox protein Nkx-3.1 isoform 2 [Homo sapiens]
Length = 159
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 38 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 95
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 96 WFQNRRYKTKRKQL 109
>gi|426359121|ref|XP_004046834.1| PREDICTED: homeobox protein Nkx-3.1 isoform 2 [Gorilla gorilla
gorilla]
Length = 190
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 69 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 126
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 127 WFQNRRYKTKRKQL 140
>gi|11692273|gb|AAG39735.1|AF249669_1 homeodomain protein NKX3.1 isoform v1 [Homo sapiens]
Length = 190
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 69 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 126
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 127 WFQNRRYKTKRKQL 140
>gi|354467576|ref|XP_003496245.1| PREDICTED: homeobox protein Nkx-3.1-like [Cricetulus griseus]
Length = 195
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 5/80 (6%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P LS+ P Q P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLT
Sbjct: 69 PGDLSSTP-----QVPKPPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLT 123
Query: 101 ETQVKIWFQNRRYKTKRKQL 120
ETQVKIWFQNRRYKTKRKQL
Sbjct: 124 ETQVKIWFQNRRYKTKRKQL 143
>gi|426359119|ref|XP_004046833.1| PREDICTED: homeobox protein Nkx-3.1 isoform 1 [Gorilla gorilla
gorilla]
Length = 159
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 38 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 95
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 96 WFQNRRYKTKRKQL 109
>gi|410041615|ref|XP_003951286.1| PREDICTED: homeobox protein Nkx-3.1 [Pan troglodytes]
Length = 159
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 38 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 95
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 96 WFQNRRYKTKRKQL 109
>gi|345790741|ref|XP_543240.3| PREDICTED: homeobox protein Nkx-3.1 [Canis lupus familiaris]
Length = 199
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 64/77 (83%), Gaps = 6/77 (7%)
Query: 46 NLPGLAQS--QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
+LP L Q+ QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQ
Sbjct: 77 SLPSLPQTSKQP----QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQ 132
Query: 104 VKIWFQNRRYKTKRKQL 120
VKIWFQNRRYKTKRKQL
Sbjct: 133 VKIWFQNRRYKTKRKQL 149
>gi|344235875|gb|EGV91978.1| Homeobox protein Nkx-3.1 [Cricetulus griseus]
Length = 187
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 5/80 (6%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P LS+ P Q P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLT
Sbjct: 61 PGDLSSTP-----QVPKPPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLT 115
Query: 101 ETQVKIWFQNRRYKTKRKQL 120
ETQVKIWFQNRRYKTKRKQL
Sbjct: 116 ETQVKIWFQNRRYKTKRKQL 135
>gi|355687171|gb|EHH25755.1| Homeobox protein NK-3-like protein B, partial [Macaca mulatta]
Length = 226
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 75/113 (66%), Gaps = 19/113 (16%)
Query: 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL--QLLEGSLNT 129
+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+Q+ LL
Sbjct: 111 AFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLA----- 165
Query: 130 PSAGNGKKVAVKILVRESHPYGSDYLYGTQGK---LLPPAPSMANSLYYYPLF 179
SA KKVAVK+LVR+ YL G + LLP PS YYYP +
Sbjct: 166 -SAPAAKKVAVKVLVRDDQ---RQYLPGEVLRPPSLLPLQPS-----YYYPYY 209
>gi|11692277|gb|AAG39737.1|AF249671_1 homeodomain protein NKX3.1 isoform v3 [Homo sapiens]
Length = 165
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 44 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 101
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 102 WFQNRRYKTKRKQL 115
>gi|256077181|ref|XP_002574886.1| neural gene activation protein; nk homeobox protein [Schistosoma
mansoni]
gi|353230773|emb|CCD77190.1| neural gene activation protein [Schistosoma mansoni]
Length = 549
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 57/62 (91%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR+RAAFSH QVYELEKRFN Q+YLS ERA++A+SL+L+ETQVKIWFQNRRYKTK++
Sbjct: 367 RRKRTRAAFSHGQVYELEKRFNYQRYLSATERAELARSLRLSETQVKIWFQNRRYKTKKR 426
Query: 119 QL 120
+
Sbjct: 427 LI 428
>gi|332247551|ref|XP_003272923.1| PREDICTED: homeobox protein Nkx-3.1 [Nomascus leucogenys]
Length = 230
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 109 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 166
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 167 WFQNRRYKTKRKQL 180
>gi|281350741|gb|EFB26325.1| hypothetical protein PANDA_002743 [Ailuropoda melanoleuca]
Length = 140
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 64/77 (83%), Gaps = 6/77 (7%)
Query: 46 NLPGLAQS--QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
+LP L Q+ QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQ
Sbjct: 18 SLPSLPQTSKQP----QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQ 73
Query: 104 VKIWFQNRRYKTKRKQL 120
VKIWFQNRRYKTKRKQL
Sbjct: 74 VKIWFQNRRYKTKRKQL 90
>gi|1732378|gb|AAB38747.1| androgen regulated homeobox protein [Homo sapiens]
Length = 234
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 113 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 170
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 171 WFQNRRYKTKRKQL 184
>gi|410041617|ref|XP_001159503.3| PREDICTED: homeobox protein Nkx-3.1 isoform 2 [Pan troglodytes]
Length = 190
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 69 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 126
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 127 WFQNRRYKTKRKQL 140
>gi|444731845|gb|ELW72187.1| Homeobox protein Nkx-3.1 [Tupaia chinensis]
Length = 350
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
Query: 46 NLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105
LPG Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVK
Sbjct: 228 TLPGPPQN--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 285
Query: 106 IWFQNRRYKTKRKQL 120
IWFQNRRYKTKRKQL
Sbjct: 286 IWFQNRRYKTKRKQL 300
>gi|2351792|gb|AAB68662.1| prostate-specific, androgen-regulated homeoprotein NKX3.1 [Homo
sapiens]
Length = 234
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 113 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 170
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 171 WFQNRRYKTKRKQL 184
>gi|11692275|gb|AAG39736.1|AF249670_1 homeodomain protein NKX3.1 isoform v2 [Homo sapiens]
Length = 185
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 64 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 121
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 122 WFQNRRYKTKRKQL 135
>gi|19923352|ref|NP_006158.2| homeobox protein Nkx-3.1 isoform 1 [Homo sapiens]
gi|17377578|sp|Q99801.2|NKX31_HUMAN RecName: Full=Homeobox protein Nkx-3.1; AltName: Full=Homeobox
protein NK-3 homolog A
gi|9963970|gb|AAG09781.1|AF247704_1 homeobox protein NKX3.1 [Homo sapiens]
gi|50959608|gb|AAH74864.1| NK3 homeobox 1 [Homo sapiens]
gi|50960412|gb|AAH74863.1| NK3 homeobox 1 [Homo sapiens]
gi|119584017|gb|EAW63613.1| NK3 transcription factor related, locus 1 (Drosophila) [Homo
sapiens]
gi|167773473|gb|ABZ92171.1| NK3 homeobox 1 [synthetic construct]
gi|208968635|dbj|BAG74156.1| NK3 homeobox 1 [synthetic construct]
Length = 234
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 113 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 170
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 171 WFQNRRYKTKRKQL 184
>gi|410209106|gb|JAA01772.1| NK3 homeobox 1 [Pan troglodytes]
Length = 234
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 113 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 170
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 171 WFQNRRYKTKRKQL 184
>gi|397506204|ref|XP_003823621.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-3.1 [Pan
paniscus]
Length = 234
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 113 LPRLPQT--PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 170
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 171 WFQNRRYKTKRKQL 184
>gi|301757926|ref|XP_002914832.1| PREDICTED: homeobox protein Nkx-2.6-like [Ailuropoda melanoleuca]
Length = 382
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 64/77 (83%), Gaps = 6/77 (7%)
Query: 46 NLPGLAQS--QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
+LP L Q+ QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQ
Sbjct: 260 SLPSLPQTSKQP----QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQ 315
Query: 104 VKIWFQNRRYKTKRKQL 120
VKIWFQNRRYKTKRKQL
Sbjct: 316 VKIWFQNRRYKTKRKQL 332
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 129 QPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTPTQVKIWFQNRRY 188
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+L L ++VAV +LVR+ P
Sbjct: 189 KCKRQRQDKSLELAGHPLAP------RRVAVPVLVRDGKP 222
>gi|11692279|gb|AAG39738.1|AF249672_1 homeodomain protein NKX3.1 isoform v4 [Homo sapiens]
Length = 159
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LP L Q+ P +KRSRAAFSH +V ELE++F+ QKYLS PERA +AK+LKLTETQVKI
Sbjct: 38 LPRLPQT--PKQPQKRSRAAFSHTRVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 95
Query: 107 WFQNRRYKTKRKQL 120
WFQNRRYKTKRKQL
Sbjct: 96 WFQNRRYKTKRKQL 109
>gi|7110673|ref|NP_035051.1| homeobox protein Nkx-3.1 [Mus musculus]
gi|3023954|sp|P97436.1|NKX31_MOUSE RecName: Full=Homeobox protein Nkx-3.1; AltName: Full=Homeobox
protein NK-3 homolog A
gi|1732071|gb|AAC52956.1| Nkx-3.1 [Mus musculus]
gi|2105350|gb|AAB58025.1| homeobox protein Nkx3.1 [Mus musculus]
gi|74209477|dbj|BAE23291.1| unnamed protein product [Mus musculus]
gi|124376054|gb|AAI32402.1| NK-3 transcription factor, locus 1 (Drosophila) [Mus musculus]
gi|124376422|gb|AAI32428.1| NK-3 transcription factor, locus 1 (Drosophila) [Mus musculus]
gi|148704004|gb|EDL35951.1| NK-3 transcription factor, locus 1 (Drosophila) [Mus musculus]
Length = 237
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 65/80 (81%), Gaps = 5/80 (6%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P L++ P + + QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLT
Sbjct: 111 PGDLASAPQVTK-QP----QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLT 165
Query: 101 ETQVKIWFQNRRYKTKRKQL 120
ETQVKIWFQNRRYKTKRKQL
Sbjct: 166 ETQVKIWFQNRRYKTKRKQL 185
>gi|395508934|ref|XP_003758762.1| PREDICTED: homeobox protein Nkx-3.1 [Sarcophilus harrisii]
Length = 367
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 58/68 (85%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKIWFQNRRYKTKRKQL
Sbjct: 258 KRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 317
Query: 121 QLLEGSLN 128
G L+
Sbjct: 318 TSDLGDLD 325
>gi|213515212|ref|NP_001134538.1| Homeobox protein koza [Salmo salar]
gi|209734106|gb|ACI67922.1| Homeobox protein koza [Salmo salar]
Length = 202
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 60/75 (80%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQV 104
S+ P +S G+ KRSRAAFSH QV ELE +FN QKYLS PERA++A +L+LTETQ+
Sbjct: 75 SSTPDAMKSFTSAGKPKRSRAAFSHLQVLELETKFNQQKYLSAPERANLANTLRLTETQI 134
Query: 105 KIWFQNRRYKTKRKQ 119
KIWFQNRRYKTKRKQ
Sbjct: 135 KIWFQNRRYKTKRKQ 149
>gi|297682495|ref|XP_002818954.1| PREDICTED: homeobox protein Nkx-3.1 [Pongo abelii]
Length = 236
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 63/76 (82%), Gaps = 6/76 (7%)
Query: 47 LPGLAQS--QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQV 104
LP L Q+ QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQV
Sbjct: 115 LPRLPQTTKQP----QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQV 170
Query: 105 KIWFQNRRYKTKRKQL 120
KIWFQNRRYKTKRKQL
Sbjct: 171 KIWFQNRRYKTKRKQL 186
>gi|126305486|ref|XP_001373243.1| PREDICTED: homeobox protein Nkx-3.1-like [Monodelphis domestica]
Length = 258
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 58/68 (85%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKIWFQNRRYKTKRKQL
Sbjct: 149 KRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 208
Query: 121 QLLEGSLN 128
G L+
Sbjct: 209 TSDLGDLD 216
>gi|77628002|ref|NP_001029316.1| homeobox protein Nkx-3.1 [Rattus norvegicus]
gi|72679802|gb|AAI00629.1| NK3 homeobox 1 [Rattus norvegicus]
gi|149049858|gb|EDM02182.1| NK-3 transcription factor, locus 1 (Drosophila) [Rattus norvegicus]
Length = 238
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 64/78 (82%), Gaps = 5/78 (6%)
Query: 43 ALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTET 102
LS+ P + + QP +KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTET
Sbjct: 114 VLSSAPQVTK-QP----QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTET 168
Query: 103 QVKIWFQNRRYKTKRKQL 120
QVKIWFQNRRYKTKR+QL
Sbjct: 169 QVKIWFQNRRYKTKRRQL 186
>gi|395842411|ref|XP_003794011.1| PREDICTED: homeobox protein Nkx-3.1 [Otolemur garnettii]
Length = 237
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKIWFQNRRYKTKRKQ
Sbjct: 127 QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 186
Query: 120 L 120
L
Sbjct: 187 L 187
>gi|47215307|emb|CAG01612.1| unnamed protein product [Tetraodon nigroviridis]
Length = 193
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 57/65 (87%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P T ++KRSRAAF+H QV ELEK+FN Q+YLS PERA +A +L+LTETQVKIWFQNRRYK
Sbjct: 75 PSTAKQKRSRAAFTHFQVLELEKKFNHQRYLSAPERAHLASALRLTETQVKIWFQNRRYK 134
Query: 115 TKRKQ 119
TKRKQ
Sbjct: 135 TKRKQ 139
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 44/55 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
+++ R FS AQV ELE+RF Q+YLSGPER +A +LKLT TQVKIWFQNRRYK
Sbjct: 4 RRKPRVLFSQAQVSELERRFRQQRYLSGPEREHLAHTLKLTPTQVKIWFQNRRYK 58
>gi|82621657|gb|ABB86500.1| NK3-ANTP class homeobox protein, partial [Nematostella vectensis]
gi|110339037|gb|ABG67782.1| NK3, partial [Nematostella vectensis]
Length = 60
Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats.
Identities = 50/60 (83%), Positives = 57/60 (95%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+KRSRAAFSH QV+ELE+RF+ QKYLSGPERAD+A +LKLTETQVKIWFQNRRYKTKR+Q
Sbjct: 1 RKRSRAAFSHQQVFELERRFSHQKYLSGPERADLAAALKLTETQVKIWFQNRRYKTKRRQ 60
>gi|327288472|ref|XP_003228950.1| PREDICTED: homeobox protein Nkx-3.1-like [Anolis carolinensis]
Length = 147
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 73/111 (65%), Gaps = 7/111 (6%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P ++KRSRAAFSH+QV ELE++F+ QKYLS PER+ +A+ LKLTETQVKIWFQNRRYKT
Sbjct: 32 PPKQQKRSRAAFSHSQVIELERKFSHQKYLSAPERSHLARHLKLTETQVKIWFQNRRYKT 91
Query: 116 KRKQLQLLEGSLNTPSA------GNGKKVAVKILVRESHPYGSDYLYGTQG 160
KRKQL G SA + A+ + V S+ Y YLY G
Sbjct: 92 KRKQLASELGGFEKNSAIPTYKDTTFSRAALALSVYHSYQY-HPYLYCLNG 141
>gi|344281307|ref|XP_003412421.1| PREDICTED: hypothetical protein LOC100662288 [Loxodonta africana]
Length = 881
Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/77 (71%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 46 NLPGLAQSQPPTGRK--KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
N G PPT ++ KRSRAAFSH QV ELE++F+ QKYLS PERA +AK+LKLTETQ
Sbjct: 755 NTSGALPDLPPTPKQPQKRSRAAFSHTQVVELERKFSHQKYLSAPERAHLAKNLKLTETQ 814
Query: 104 VKIWFQNRRYKTKRKQL 120
VKIWFQNRRYKTKRKQL
Sbjct: 815 VKIWFQNRRYKTKRKQL 831
>gi|209731906|gb|ACI66822.1| Homeobox protein koza [Salmo salar]
Length = 202
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 59/75 (78%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQV 104
S+ P +S G+ KRSRAAFSH QV ELE +FN QKYLS PERA++A +L+LTE Q+
Sbjct: 75 SSTPDAMKSFTSAGKPKRSRAAFSHLQVLELETKFNQQKYLSAPERANLANTLRLTEAQI 134
Query: 105 KIWFQNRRYKTKRKQ 119
KIWFQNRRYKTKRKQ
Sbjct: 135 KIWFQNRRYKTKRKQ 149
>gi|189522748|ref|XP_682960.3| PREDICTED: homeobox protein koza [Danio rerio]
Length = 337
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+KKRSRAAF+H QV ELEK+F+ Q+YLS PER +A +L LTETQVKIWFQNRRYKTKR
Sbjct: 219 GKKKRSRAAFTHLQVLELEKKFSRQRYLSAPERTHLASALHLTETQVKIWFQNRRYKTKR 278
Query: 118 KQL 120
+QL
Sbjct: 279 RQL 281
>gi|449273524|gb|EMC83018.1| Homeobox protein Nkx-3.2, partial [Columba livia]
Length = 63
Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/57 (85%), Positives = 55/57 (96%)
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
RAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQNRRYKTKR+Q+
Sbjct: 1 RAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQM 57
>gi|391326879|ref|XP_003737937.1| PREDICTED: homeobox protein Nkx-2.6-like [Metaseiulus occidentalis]
Length = 185
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 56/61 (91%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KKR RAAF+HAQV LE+RF++Q+YLS PERA++A+SL LTETQVKIWFQNRRYKTKR+
Sbjct: 44 KKKRCRAAFTHAQVCALERRFSSQRYLSSPERAELARSLGLTETQVKIWFQNRRYKTKRR 103
Query: 119 Q 119
Q
Sbjct: 104 Q 104
>gi|449488195|ref|XP_004175811.1| PREDICTED: homeobox protein Nkx-3.1-like [Taeniopygia guttata]
Length = 127
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
KRSRAAFSH+QV ELE++F+ QKYLS PERA +A+ L+LTETQVKIWFQNRRYKTKRKQ
Sbjct: 24 KRSRAAFSHSQVIELERKFSHQKYLSAPERAHLARHLQLTETQVKIWFQNRRYKTKRKQA 83
Query: 121 QLLEGSLNTPSAGNGKKVAVKILVRESHPY 150
L++P + +R + PY
Sbjct: 84 VAGMSRLDSPQEAPEFPGMSLLALRSAWPY 113
>gi|449488199|ref|XP_004175812.1| PREDICTED: homeobox protein Nkx-3.1-like [Taeniopygia guttata]
Length = 133
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
KRSRAAFSH+QV ELE++F+ QKYLS PERA +A+ L+LTETQVKIWFQNRRYKTKRKQ
Sbjct: 30 KRSRAAFSHSQVIELERKFSHQKYLSAPERAHLARHLQLTETQVKIWFQNRRYKTKRKQA 89
Query: 121 QLLEGSLNTPSAGNGKKVAVKILVRESHPY 150
L++P + +R + PY
Sbjct: 90 VAGMSRLDSPQEAPEFPGMSLLALRAAWPY 119
>gi|62202588|gb|AAH93132.1| Nkx2.5 protein [Danio rerio]
gi|197246977|gb|AAI64336.1| Nkx2.5 protein [Danio rerio]
Length = 312
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 86/155 (55%), Gaps = 22/155 (14%)
Query: 1 MDSMKDSEEYYKKINNNNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRK 60
MD +KD++ T++T KKDI ++ P L ++ P RK
Sbjct: 95 MDYVKDAK-----------TDDTFENKEKKDIGCCQEEPGEDL-----KLDDAERPKQRK 138
Query: 61 KRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-K 118
+R R FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +
Sbjct: 139 RRKPRVLFSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQR 198
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSD 153
Q Q LE P ++++V +LVR+ P D
Sbjct: 199 QDQTLEMVGIAPP----RRISVPVLVRDGKPCLGD 229
>gi|49170096|ref|NP_990362.1| NK2 transcription factor related, locus 3 [Gallus gallus]
gi|3036838|emb|CAA66257.1| cNKx-2.3 [Gallus gallus]
Length = 323
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 7/102 (6%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-K 118
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR +
Sbjct: 139 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 198
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQG 160
Q + LE L P ++VAV +LVR+ P L G+QG
Sbjct: 199 QDKSLE--LGAPRPRAPRRVAVPVLVRDGKP----CLGGSQG 234
>gi|24371274|ref|NP_571496.1| homeobox protein Nkx-2.5 [Danio rerio]
gi|1518149|gb|AAC05229.1| homeodomain protein Nkx2.5 [Danio rerio]
Length = 314
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 79/136 (58%), Gaps = 11/136 (8%)
Query: 20 TNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKR 78
T++T KKDI ++ P L ++ P RK+R R FS AQVYELE+R
Sbjct: 105 TDDTFEDKEKKDIGFCQEDPGEDL-----KLDDAERPKQRKRRKPRVLFSQAQVYELERR 159
Query: 79 FNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEGSLNTPSAGNGKK 137
F QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE P ++
Sbjct: 160 FKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEMVGIAPP----RR 215
Query: 138 VAVKILVRESHPYGSD 153
++V +LVR+ P D
Sbjct: 216 ISVPVLVRDGKPCLGD 231
>gi|199581467|gb|ACH89435.1| NK-like homeobox protein 4b [Capitella teleta]
Length = 297
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 7/92 (7%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK- 118
K++ R FS AQVYELE+RF Q+YLS PER +A LKLT QVKIWFQNRRYK KR+
Sbjct: 165 KRKPRVLFSQAQVYELERRFKQQRYLSAPEREQLASMLKLTSQQVKIWFQNRRYKMKRQT 224
Query: 119 QLQLLE-GSLNTPSAGNGKKVAVKILVRESHP 149
Q + LE G+L++P ++VAV +LVR+ P
Sbjct: 225 QDKTLELGALHSP-----RRVAVPVLVRDGKP 251
>gi|22135577|gb|AAM93268.1| NK2.1 homeodomain protein [Ptychodera flava]
Length = 323
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 62/94 (65%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
PT ++++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PTVQRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASLINLTPTQVKIWFQNHRYKM 216
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR+Q N S + ++VAV +LV++ P
Sbjct: 217 KRQQKDRTMTEQNNVSHQSPRRVAVPVLVKDGKP 250
>gi|1911861|gb|AAB50916.1| tinman homeodomain homolog [Danio rerio]
Length = 314
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 78/136 (57%), Gaps = 11/136 (8%)
Query: 20 TNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKR 78
T++T KKDI ++ P L + P RK+R R FS AQVYEL++R
Sbjct: 105 TDDTFENKEKKDIGCCQEDPGEDL-----KLDDADVPKQRKRRKPRVLFSQAQVYELQRR 159
Query: 79 FNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEGSLNTPSAGNGKK 137
F QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE P ++
Sbjct: 160 FKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEMVGIAPP----RR 215
Query: 138 VAVKILVRESHPYGSD 153
++V +LVR+ P D
Sbjct: 216 ISVPVLVRDGKPCLGD 231
>gi|357615798|gb|EHJ69838.1| hypothetical protein KGM_03371 [Danaus plexippus]
Length = 255
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 10/119 (8%)
Query: 44 LSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
++N+ GLA Q P ++++ R F+ AQVYELE+RF QKYLS PER +A
Sbjct: 88 VNNMGGLAACAGPDAKPMQFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLAS 147
Query: 96 SLKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGS 152
+ LT TQVKIWFQN RYK KR K+ + E + + SA + ++VAV +LV++ P GS
Sbjct: 148 LIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSASSPRRVAVPVLVKDGKPCGS 206
>gi|332023749|gb|EGI63973.1| Homeobox protein Nkx-2.6 [Acromyrmex echinatior]
Length = 380
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A+SLKLT TQVKIWFQ
Sbjct: 106 LRKSQSGKRTKRKPRVLFSQTQVYELEQRFKQQRYLSAPEREMLAQSLKLTSTQVKIWFQ 165
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
NRRYK KR +++ E L + N KK+AV IL+++ P
Sbjct: 166 NRRYKNKRARIEDAEK-LQAQNMKNQPLKKIAVPILIKDGKP 206
>gi|146217153|gb|ABQ10640.1| homeodomain protein NK4 [Platynereis dumerilii]
Length = 374
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 75/122 (61%), Gaps = 10/122 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
+K++ R FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR
Sbjct: 230 QKRKPRVLFSQAQVYELERRFKQQRYLSAPEREQLASMLKLTSTQVKIWFQNRRYKMKRQ 289
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP-YGSDYLYGTQ----GKLLPPAPSMANS 172
+Q + LE + P ++VAV +LVR+ P G+ Y + PP PS++
Sbjct: 290 RQDKTLELTALQPP----RRVAVPVLVRDGKPCMGNGMAYPSAPYNVNPFCPPYPSVSAP 345
Query: 173 LY 174
Y
Sbjct: 346 AY 347
>gi|344274861|ref|XP_003409233.1| PREDICTED: homeobox protein Nkx-2.3-like [Loxodonta africana]
Length = 364
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 73/117 (62%), Gaps = 11/117 (9%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 140 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 199
Query: 111 RRYKTKR-KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP--------YGSDYLYGT 158
RRYK KR +Q + LE + P ++VAV +LVR+ P YG+ Y G
Sbjct: 200 RRYKCKRQRQDKSLELGAHAPQP-PPRRVAVPVLVRDGKPCVTPGAQAYGAPYGVGA 255
>gi|195483271|ref|XP_002086910.1| GE11056 [Drosophila yakuba]
gi|194186651|gb|EDX00263.1| GE11056 [Drosophila yakuba]
Length = 430
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 44 LSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
+ N+ GLA Q P ++++ R F+ AQVYELE+RF Q+YLS PER +A
Sbjct: 191 MGNMSGLAACSVSDTKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLAS 250
Query: 96 SLKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR K+ + E + + SA + ++VAV +LV++ P
Sbjct: 251 LIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSASSPRRVAVPVLVKDGKP 306
>gi|194876606|ref|XP_001973810.1| GG16309 [Drosophila erecta]
gi|190655593|gb|EDV52836.1| GG16309 [Drosophila erecta]
Length = 430
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 44 LSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
+ N+ GLA Q P ++++ R F+ AQVYELE+RF Q+YLS PER +A
Sbjct: 191 MGNMSGLAACSVSDTKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLAS 250
Query: 96 SLKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR K+ + E + + SA + ++VAV +LV++ P
Sbjct: 251 LIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSASSPRRVAVPVLVKDGKP 306
>gi|3036961|dbj|BAA25399.1| CsNKX [Ciona savignyi]
Length = 595
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A+ LKLT TQVKIWFQNRRYK KR +
Sbjct: 370 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAQMLKLTSTQVKIWFQNRRYKCKRMR 429
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRE 146
+ +L S G ++VAV +LVR+
Sbjct: 430 ---QDKTLELASIGAPRRVAVPVLVRD 453
>gi|195156922|ref|XP_002019345.1| GL12355 [Drosophila persimilis]
gi|194115936|gb|EDW37979.1| GL12355 [Drosophila persimilis]
Length = 467
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 44 LSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
+ N+ GLA Q P ++++ R F+ AQVYELE+RF Q+YLS PER +A
Sbjct: 228 MGNMSGLAACSVSDTKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLAS 287
Query: 96 SLKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR K+ + E + + SA + ++VAV +LV++ P
Sbjct: 288 LIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSASSPRRVAVPVLVKDGKP 343
>gi|118344270|ref|NP_001071957.1| transcription factor protein [Ciona intestinalis]
gi|70570359|dbj|BAE06585.1| transcription factor protein [Ciona intestinalis]
Length = 623
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A+ LKLT TQVKIWFQNRRYK KR +
Sbjct: 398 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAQILKLTSTQVKIWFQNRRYKCKRMR 457
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRE 146
+ +L S G ++VAV +LVR+
Sbjct: 458 ---QDKTLELASIGPPRRVAVPVLVRD 481
>gi|194767451|ref|XP_001965829.1| GF20558 [Drosophila ananassae]
gi|190618429|gb|EDV33953.1| GF20558 [Drosophila ananassae]
Length = 429
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 10/120 (8%)
Query: 44 LSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
+ N+ GLA Q P ++++ R F+ AQVYELE+RF Q+YLS PER +A
Sbjct: 190 MGNMSGLAACSVSDTKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLAS 249
Query: 96 SLKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSD 153
+ LT TQVKIWFQN RYK KR K+ + E + + SA + ++VAV +LV++ P +
Sbjct: 250 LIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSASSPRRVAVPVLVKDGKPCAGN 309
>gi|405973136|gb|EKC37867.1| Homeobox protein Nkx-2.6 [Crassostrea gigas]
Length = 326
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 64/91 (70%), Gaps = 6/91 (6%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-K 118
+++ R FS AQV+ELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +
Sbjct: 187 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREQLANLLKLTSTQVKIWFQNRRYKCKRQR 246
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q + LE S P ++VAV++LVR+ P
Sbjct: 247 QDKSLELSSMPP-----RRVAVQMLVRDGRP 272
>gi|334313493|ref|XP_001373211.2| PREDICTED: hypothetical protein LOC100020870 [Monodelphis
domestica]
Length = 564
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-K 118
+++ R FS QV+ELE+RF Q+YLS PER +A++L+LT TQVKIWFQNRRYK KR +
Sbjct: 408 RRKPRVLFSQVQVFELERRFRQQRYLSAPEREHLARALQLTSTQVKIWFQNRRYKCKRQR 467
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q LE + P + + ++VAV +LVR+ P
Sbjct: 468 QDASLELAGQPPPSLSARRVAVPVLVRDGRP 498
>gi|195446433|ref|XP_002070778.1| GK10842 [Drosophila willistoni]
gi|194166863|gb|EDW81764.1| GK10842 [Drosophila willistoni]
Length = 475
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 44 LSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
+ N+ GLA Q P ++++ R F+ AQVYELE+RF Q+YLS PER +A
Sbjct: 236 MGNMSGLAACSVSDTKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLAS 295
Query: 96 SLKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR K+ + E + + SA + ++VAV +LV++ P
Sbjct: 296 LIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSASSPRRVAVPVLVKDGKP 351
>gi|1667539|gb|AAB18807.1| homeodomain protein Pnbap, partial [Polycelis nigra]
Length = 60
Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/60 (75%), Positives = 56/60 (93%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KKR+RAAFSH QVYELE+RF Q+YLSG ERA++A+SL+L+ETQ+KIWFQNRRYKTK++Q
Sbjct: 1 KKRTRAAFSHTQVYELERRFGHQRYLSGSERAELARSLRLSETQIKIWFQNRRYKTKKRQ 60
>gi|56269675|gb|AAV85465.1| tinman [Euprymna scolopes]
Length = 303
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 64/92 (69%), Gaps = 5/92 (5%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
++++ R FS AQV+ELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR
Sbjct: 154 QRRKPRVLFSQAQVFELERRFKQQRYLSAPEREQLANMLKLTSTQVKIWFQNRRYKCKRQ 213
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+Q + LE S P ++VAV +LVR+ P
Sbjct: 214 RQDKSLEMSTMHPP----RRVAVPVLVRDGKP 241
>gi|328791713|ref|XP_001120208.2| PREDICTED: homeobox protein Nkx-2.5-like [Apis mellifera]
Length = 394
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A++LKLT TQVKIWFQ
Sbjct: 111 LRKSQSGKRTKRKPRVLFSQNQVYELEQRFKQQRYLSAPERELLAQTLKLTSTQVKIWFQ 170
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNG----KKVAVKILVRESHPYGSDYLY 156
NRRYK KR +L+ +E SL +A G KK+ V +L+++ P D Y
Sbjct: 171 NRRYKNKRARLEGVE-SLQAQNAMKGQSSLKKIHVPVLIKDGKPNLQDNPY 220
>gi|151301168|ref|NP_001093073.1| homeobox protein Nkx-2.8 [Danio rerio]
Length = 224
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ YELE+RF Q+YLS PER +A L+LT TQVKIWFQN RYK KR
Sbjct: 77 KRKKRRVLFSKAQTYELERRFRQQRYLSAPEREQLAHLLRLTPTQVKIWFQNHRYKMKRA 136
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK-LLPPA 166
+++ + LN P ++V V ILVR+ PY + + +G ++PP
Sbjct: 137 RIECAQD-LNQPPV--LRRVVVPILVRDGKPYQNCTIDTEKGNGIVPPT 182
>gi|432936500|ref|XP_004082146.1| PREDICTED: homeobox protein Nkx-2.8-like [Oryzias latipes]
Length = 243
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T + K+ R FS AQ ELE+RF Q+YLSGPER +A+ L LT TQVKIWFQN RYK K
Sbjct: 82 TQKSKKRRVLFSKAQTLELERRFRQQRYLSGPEREQLARMLSLTPTQVKIWFQNHRYKMK 141
Query: 117 RKQLQLLEGSLNTPSAGNG---KKVAVKILVRESHPYGSDYL 155
R + +EG+L A ++V V ILVRE P+ +L
Sbjct: 142 RGR---VEGALQDADAAQPPVLRRVVVPILVREGKPFHPCFL 180
>gi|195388592|ref|XP_002052963.1| GJ23616 [Drosophila virilis]
gi|194151049|gb|EDW66483.1| GJ23616 [Drosophila virilis]
Length = 467
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 44 LSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
+ N+ GLA Q P ++++ R F+ AQVYELE+RF Q+YLS PER +A
Sbjct: 226 MGNMTGLAACSVNDAKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLAS 285
Query: 96 SLKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR K+ + E + + SA + ++VAV +LV++ P
Sbjct: 286 LIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSASSPRRVAVPVLVKDGKP 341
>gi|322793629|gb|EFZ17079.1| hypothetical protein SINV_08571 [Solenopsis invicta]
Length = 378
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A++LKLT TQVKIWFQ
Sbjct: 104 LRKSQSGKRTKRKPRVLFSQTQVYELEQRFKQQRYLSAPEREMLAQTLKLTSTQVKIWFQ 163
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
NRRYK KR +++ E L + N KK+AV IL+++ P
Sbjct: 164 NRRYKNKRARIEDAEK-LQAQNMKNQPLKKIAVPILIKDGKP 204
>gi|195107108|ref|XP_001998158.1| GI23787 [Drosophila mojavensis]
gi|193914752|gb|EDW13619.1| GI23787 [Drosophila mojavensis]
Length = 466
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 44 LSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
+ N+ GLA Q P ++++ R F+ AQVYELE+RF Q+YLS PER +A
Sbjct: 225 MGNMTGLAACSVSDTKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLAS 284
Query: 96 SLKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR K+ + E + + SA + ++VAV +LV++ P
Sbjct: 285 LIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSASSPRRVAVPVLVKDGKP 340
>gi|195039034|ref|XP_001990852.1| GH18027 [Drosophila grimshawi]
gi|193895048|gb|EDV93914.1| GH18027 [Drosophila grimshawi]
Length = 467
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 44 LSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
+ N+ GLA Q P ++++ R F+ AQVYELE+RF Q+YLS PER +A
Sbjct: 226 MGNMTGLAACSVSDAKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLAS 285
Query: 96 SLKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR K+ + E + + SA + ++VAV +LV++ P
Sbjct: 286 LIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSASSPRRVAVPVLVKDGKP 341
>gi|443696361|gb|ELT97079.1| hypothetical protein CAPTEDRAFT_220898 [Capitella teleta]
Length = 297
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 65/92 (70%), Gaps = 7/92 (7%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK- 118
K++ R FS AQVYELE+RF Q+YLS PER +A LKLT QVKIWFQNRRYK KR+
Sbjct: 165 KRKPRVLFSQAQVYELERRFKQQRYLSAPEREQLASMLKLTSQQVKIWFQNRRYKMKRQT 224
Query: 119 QLQLLE-GSLNTPSAGNGKKVAVKILVRESHP 149
Q + LE +L++P ++VAV +LVR+ P
Sbjct: 225 QDKTLELAALHSP-----RRVAVPVLVRDGKP 251
>gi|350412937|ref|XP_003489823.1| PREDICTED: homeobox protein Nkx-2.5-like [Bombus impatiens]
Length = 384
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A++LKLT TQVKIWFQ
Sbjct: 109 LRKSQSGKRTKRKPRVLFSQNQVYELEQRFKQQRYLSAPERELLAQTLKLTSTQVKIWFQ 168
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
NRRYK KR +L+ E L +A N KK+ V +L+R+ P
Sbjct: 169 NRRYKNKRARLEDAE-KLQAQNAKNQSLKKIHVPVLIRDGKP 209
>gi|259013388|ref|NP_001158401.1| NK2-3/5 transcription factor [Saccoglossus kowalevskii]
gi|90660006|gb|ABD97278.1| NK2-3/5 transcription factor [Saccoglossus kowalevskii]
Length = 268
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
SQ ++++ R FS AQV+ELE+RF Q+YLS PER +A LKLT TQVKIWFQNRR
Sbjct: 148 SQQKNRQRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLANMLKLTSTQVKIWFQNRR 207
Query: 113 YKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
YK KR Q + +L + ++VAV +LVR+ P
Sbjct: 208 YKCKR---QRQDKTLELATQPAPRRVAVPVLVRDGKP 241
>gi|348511101|ref|XP_003443083.1| PREDICTED: homeobox protein Nkx-2.8-like [Oreochromis niloticus]
Length = 250
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Query: 53 SQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
S+P +K K+ R FS AQ ELE+RF Q+YLSGPER +A+ L LT TQVKIWFQN
Sbjct: 82 SEPEQSKKSKKRRVLFSKAQTLELERRFRQQRYLSGPEREQLARLLSLTPTQVKIWFQNH 141
Query: 112 RYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMAN 171
RYK KR + + + P ++V V ILVR+ P+ + L + LPP ++
Sbjct: 142 RYKMKRGRAEGALQDVEIPQPPVLRRVVVPILVRDGKPFHTCLLDSEKFGCLPP----SS 197
Query: 172 SLYYYPLFYNMHSLYGTQGKLLPP 195
+PL Y SL LPP
Sbjct: 198 QPVPFPLAYT--SLQHPSPVALPP 219
>gi|340708586|ref|XP_003392904.1| PREDICTED: homeobox protein Nkx-2.5-like [Bombus terrestris]
Length = 384
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A++LKLT TQVKIWFQ
Sbjct: 109 LRKSQSGKRTKRKPRVLFSQNQVYELEQRFKQQRYLSAPERELLAQTLKLTSTQVKIWFQ 168
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
NRRYK KR +L+ E L +A N KK+ V +L+R+ P
Sbjct: 169 NRRYKNKRARLEDAE-KLQAQNAKNQSLKKIHVPVLIRDGKP 209
>gi|242012309|ref|XP_002426875.1| Antennapedia, putative [Pediculus humanus corporis]
gi|212511104|gb|EEB14137.1| Antennapedia, putative [Pediculus humanus corporis]
Length = 396
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 8/101 (7%)
Query: 57 TGRKKRSRAA-FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
TG KKR R FS AQ YELE+RF QKYLS PER +A ++LT TQVKIWFQN RYKT
Sbjct: 255 TGHKKRKRRVLFSKAQTYELERRFRQQKYLSAPEREHLASIIRLTPTQVKIWFQNHRYKT 314
Query: 116 KRKQLQLLEGSLNTPSAGNG-----KKVAVKILVRESHPYG 151
KR Q + +G ++ S G ++VAV +LVR+ P G
Sbjct: 315 KRAQQE--KGIHDSRSTSVGTMPSPRRVAVPVLVRDGKPCG 353
>gi|410897667|ref|XP_003962320.1| PREDICTED: homeobox protein Nkx-2.8-like [Takifugu rubripes]
gi|12006015|gb|AAG44721.1|AF267536_1 NKX2.9 [Takifugu rubripes]
Length = 241
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 53 SQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
S+P +K K+ R FS AQ ELE+RF Q+YLSGPER +A+ L LT TQVKIWFQN
Sbjct: 75 SEPDKNKKSKKRRVLFSKAQTLELERRFRQQRYLSGPEREQLARLLSLTPTQVKIWFQNH 134
Query: 112 RYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMAN 171
RYK KR + + + P + ++V V ILVR+ P+ L + LP +P+
Sbjct: 135 RYKMKRGRAEGGLQDMEMPQSSVLRRVVVPILVRDGKPFHPCLLDPEKAACLPGSPAAPF 194
Query: 172 SLYY 175
L Y
Sbjct: 195 PLTY 198
>gi|60649727|gb|AAH91676.1| NKX2-8 protein, partial [Danio rerio]
Length = 260
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ YELE+RF Q+YLS PER +A L+LT TQVKIWFQN RYK KR
Sbjct: 113 KRKKRRVLFSKAQTYELERRFRQQRYLSAPEREQLAHLLRLTPTQVKIWFQNHRYKMKRA 172
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGK-LLPPA 166
+++ + LN P ++V V ILVR+ PY + + +G ++PP
Sbjct: 173 RIEWAQD-LNQPPV--LRRVVVPILVRDGKPYQNCTIDTEKGNGIVPPT 218
>gi|34305641|gb|AAQ63627.1| NK-2 class homeodomain protein Nkx2-5 [Octopus kaurna]
Length = 223
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 10/105 (9%)
Query: 46 NLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105
+ P L Q Q +++ R FS AQVYELE+RF Q+YLS PER +A LKLT TQVK
Sbjct: 69 DCPLLRQRQ-----RRKPRVLFSQAQVYELERRFKQQRYLSAPEREQLANMLKLTSTQVK 123
Query: 106 IWFQNRRYKTKR-KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
IWFQNRRYK KR +Q + LE S P ++VAV +LVR+ P
Sbjct: 124 IWFQNRRYKCKRQRQDKNLELSTMQPP----RRVAVPVLVRDGKP 164
>gi|348529033|ref|XP_003452019.1| PREDICTED: homeobox protein Nkx-2.5-like [Oreochromis niloticus]
Length = 344
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 24/168 (14%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-K 118
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR +
Sbjct: 156 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 215
Query: 119 QLQLLE----GSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLP-----PAPSM 169
Q + LE + ++VAV +LVR+ P L G+Q P P P
Sbjct: 216 QDKTLEIAGHHHHHHHPPPPPRRVAVPVLVRDGRP----CLAGSQNYNPPYTVGAPNPYS 271
Query: 170 ANSLYYY----PLFYNMHSLYGTQGKLLPPAPSMANSLYYYPLFYNMH 213
NS Y ++ N +S + LPP+ + AN+ F NM+
Sbjct: 272 YNSYPAYSYNNSVYSNTYSCTYSSFPSLPPSNASANA------FMNMN 313
>gi|241747371|ref|XP_002414321.1| homeobox protein NK-2, putative [Ixodes scapularis]
gi|215508175|gb|EEC17629.1| homeobox protein NK-2, putative [Ixodes scapularis]
Length = 280
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 22/148 (14%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 132 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQNHRYKTKRA 191
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAP--------SM 169
+Q + L+G+ P + ++VAV +LVR+ P + ++ PP P ++
Sbjct: 192 RQEKGLDGTGGNPLP-SPRRVAVPVLVRDGKP--CQPTSSLKSEVGPPVPFPGDLGPSAV 248
Query: 170 ANSL----------YYYPLFYNMHSLYG 187
A + Y +PL H +G
Sbjct: 249 ATCMASFGSNVMPTYTHPLMQPQHRWWG 276
>gi|156541890|ref|XP_001600859.1| PREDICTED: homeobox protein Nkx-2.6-like [Nasonia vitripennis]
Length = 380
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A+SLKLT TQVKIWFQ
Sbjct: 110 LRKSQSGKRTKRKPRVLFSQTQVYELEQRFKQQRYLSAPEREMLAQSLKLTSTQVKIWFQ 169
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
NRRYK KR +L+ E + T + N KK+ V +L+++ P
Sbjct: 170 NRRYKNKRARLEDAE-KVQTQNLKNQSLKKIPVPVLIKDGKP 210
>gi|83318943|emb|CAJ38809.1| Nk2.1 protein [Platynereis dumerilii]
Length = 362
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 13/113 (11%)
Query: 45 SNLPGLAQS---QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTE 101
S L GL Q Q P ++++ R F+ AQVYELE+RF QKYLS PER +A + LT
Sbjct: 150 SGLGGLDQKTGMQFPMTQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASMINLTP 209
Query: 102 TQVKIWFQNRRYKTKRKQ-----LQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
TQVKIWFQN RYK KR Q L GS ++P K+VAV +LV++ P
Sbjct: 210 TQVKIWFQNHRYKNKRAQKDKEKLDQQSGSQHSP-----KRVAVPVLVKDGKP 257
>gi|395817034|ref|XP_003781982.1| PREDICTED: homeobox protein Nkx-2.5 [Otolemur garnettii]
Length = 324
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 64/100 (64%), Gaps = 9/100 (9%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 GSLNTPSAGNGKKVAVKILVR-------ESHPYGSDYLYG 157
L P +++AV +LVR +S PY S Y G
Sbjct: 205 VGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYASAYGVG 244
>gi|326928388|ref|XP_003210362.1| PREDICTED: homeobox protein Nkx-2.5-like [Meleagris gallopavo]
Length = 274
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 62/96 (64%), Gaps = 12/96 (12%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 127 FSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 186
Query: 126 SLNTPSAGNGKKVAVKILVR-------ESHPYGSDY 154
P +++AV +LVR ES PY S Y
Sbjct: 187 VGIPPP----RRIAVPVLVRDGKPCLGESSPYSSPY 218
>gi|62862652|ref|NP_001015473.1| scarecrow, isoform A [Drosophila melanogaster]
gi|30923492|gb|EAA45970.1| scarecrow, isoform A [Drosophila melanogaster]
Length = 468
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 84/147 (57%), Gaps = 19/147 (12%)
Query: 22 NTMSYYGK--KDIRDA--RDLPKPAA-----LSNLPGLAQS--------QPPTGRKKRSR 64
N+ S+YG D R A R + A+ + N+ GLA Q P ++++ R
Sbjct: 198 NSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRR 257
Query: 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR--KQLQL 122
F+ AQVYELE+RF Q+YLS PER +A + LT TQVKIWFQN RYK KR K+ +
Sbjct: 258 VLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAM 317
Query: 123 LEGSLNTPSAGNGKKVAVKILVRESHP 149
E + + A + ++VAV +LV++ P
Sbjct: 318 AEQNQHNQPASSPRRVAVPVLVKDGKP 344
>gi|307214832|gb|EFN89712.1| Homeobox protein Nkx-2.6 [Harpegnathos saltator]
Length = 384
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A+SLKLT TQVKIWFQ
Sbjct: 106 LRKSQSGKRTKRKPRVLFSQTQVYELEQRFKQQRYLSAPEREMLAQSLKLTSTQVKIWFQ 165
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
NRRYK KR +++ E L S + KK++V IL+++ P
Sbjct: 166 NRRYKNKRARIEDAEK-LQAQSMKSQPLKKISVPILIKDGKP 206
>gi|241636066|ref|XP_002410588.1| homeobox protein NK-2, putative [Ixodes scapularis]
gi|215503473|gb|EEC12967.1| homeobox protein NK-2, putative [Ixodes scapularis]
Length = 240
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 70/119 (58%), Gaps = 19/119 (15%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
Q P G++++ R F+ AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RY
Sbjct: 2 QFPLGQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQVKIWFQNHRY 61
Query: 114 KTKRK-------QLQLLEGSL-------NTPSAGNG-----KKVAVKILVRESHPYGSD 153
K KR+ + QL G+ + S G G +KVAV +LV++ P GS
Sbjct: 62 KCKRQAKEKAMAEQQLHHGATSGGSTNSHAESTGGGGHHSPRKVAVPVLVKDGKPCGSS 120
>gi|34305639|gb|AAQ63626.1| NK-2 class homeodomain protein Nkx2-5 [Sepia officinalis]
Length = 326
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 63/92 (68%), Gaps = 5/92 (5%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
++++ R FS AQV+ELE+RF Q+YLS PER +A LKLT TQVKIWF NRRYK KR
Sbjct: 181 QRRKPRVLFSQAQVFELERRFKQQRYLSAPEREQLANMLKLTSTQVKIWFHNRRYKCKRQ 240
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+Q + LE S P ++VAV +LVR+ P
Sbjct: 241 RQDKSLEMSTMHPP----RRVAVPVLVRDGKP 268
>gi|426246283|ref|XP_004016924.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.5 [Ovis
aries]
Length = 323
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 203
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 204 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 232
>gi|109079782|ref|XP_001096796.1| PREDICTED: homeobox protein Nkx-2.5 [Macaca mulatta]
Length = 324
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 233
>gi|355750433|gb|EHH54771.1| hypothetical protein EGM_15670 [Macaca fascicularis]
Length = 324
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 233
>gi|426351036|ref|XP_004043064.1| PREDICTED: homeobox protein Nkx-2.5 isoform 1 [Gorilla gorilla
gorilla]
Length = 324
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 233
>gi|167859581|gb|ACA04745.1| NK2/3/4-like [Amphimedon queenslandica]
Length = 359
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RK+R R FSHAQ+YELE+R+ QKYL+ ER +A L+LTETQVKIWFQNRRYK KR+
Sbjct: 112 RKRRPRGLFSHAQIYELERRYALQKYLTAHEREQLANMLRLTETQVKIWFQNRRYKNKRQ 171
Query: 119 QLQ 121
QL+
Sbjct: 172 QLE 174
>gi|91081857|ref|XP_967738.1| PREDICTED: ventral nervous system defective [Tribolium castaneum]
gi|270005019|gb|EFA01467.1| hypothetical protein TcasGA2_TC007014 [Tribolium castaneum]
Length = 266
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 48 PGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIW 107
P L Q +K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIW
Sbjct: 126 PHLTDQQASGHKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQVKIW 185
Query: 108 FQNRRYKTKRKQLQL-LEGSLNTPSAGNGKKVAVKILVRESHPYGS-DYLYGTQGKL-LP 164
FQN RYKTKR Q + + N + ++VAV +LVR+ P S + G L +P
Sbjct: 186 FQNHRYKTKRAQHEKGMHDQQNNNPLPSPRRVAVPVLVRDGKPCLSGGPKHPDPGSLQVP 245
Query: 165 PAPSMANSLYYYPLFYNMHSLY 186
AP M +S + PL Y ++
Sbjct: 246 GAPMMMSS--HGPLMYGQPRVW 265
>gi|410949194|ref|XP_003981308.1| PREDICTED: homeobox protein Nkx-2.5 [Felis catus]
Length = 323
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 203
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 204 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 232
>gi|340370702|ref|XP_003383885.1| PREDICTED: hypothetical protein LOC100631730 [Amphimedon
queenslandica]
Length = 359
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RK+R R FSHAQ+YELE+R+ QKYL+ ER +A L+LTETQVKIWFQNRRYK KR+
Sbjct: 112 RKRRPRGLFSHAQIYELERRYALQKYLTAHEREQLANMLRLTETQVKIWFQNRRYKNKRQ 171
Query: 119 QLQ 121
QL+
Sbjct: 172 QLE 174
>gi|259013348|ref|NP_001158382.1| NK2 homeobox 1 [Saccoglossus kowalevskii]
gi|32307789|gb|AAP79291.1| nkx2-1 [Saccoglossus kowalevskii]
Length = 393
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 62/94 (65%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
PT ++++ R FS AQVYELE+R+ QKYLS PER +A + LT TQVKIWFQN RYKT
Sbjct: 145 PTVQRRKRRVLFSQAQVYELERRYKQQKYLSAPEREHLASLINLTPTQVKIWFQNHRYKT 204
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR+ N + + ++VAV +LV++ P
Sbjct: 205 KRQTKDRTMQEQNNVTHQSPRRVAVPVLVKDGKP 238
>gi|355691855|gb|EHH27040.1| hypothetical protein EGK_17142 [Macaca mulatta]
Length = 324
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 233
>gi|4758090|ref|NP_004378.1| homeobox protein Nkx-2.5 isoform 1 [Homo sapiens]
gi|1708211|sp|P52952.1|NKX25_HUMAN RecName: Full=Homeobox protein Nkx-2.5; AltName:
Full=Cardiac-specific homeobox; AltName: Full=Homeobox
protein CSX; AltName: Full=Homeobox protein NK-2 homolog
E
gi|1314281|gb|AAC50470.1| HCSX [Homo sapiens]
gi|4038731|dbj|BAA35181.1| Nkx-2.5 [Homo sapiens]
gi|19343931|gb|AAH25711.1| NK2 transcription factor related, locus 5 (Drosophila) [Homo
sapiens]
gi|119581808|gb|EAW61404.1| NK2 transcription factor related, locus 5 (Drosophila) [Homo
sapiens]
gi|122893042|gb|ABM67538.1| Homo sapiens NKX2.5 [Shuttle vector pUCAG.nkx2.5]
gi|123993275|gb|ABM84239.1| NK2 transcription factor related, locus 5 (Drosophila) [synthetic
construct]
gi|123994857|gb|ABM85030.1| NK2 transcription factor related, locus 5 (Drosophila) [synthetic
construct]
gi|124000235|gb|ABM87626.1| NK2 transcription factor related, locus 5 (Drosophila) [synthetic
construct]
gi|158254662|dbj|BAF83304.1| unnamed protein product [Homo sapiens]
gi|208968631|dbj|BAG74154.1| NK2 transcription factor related, locus 5 [synthetic construct]
Length = 324
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 233
>gi|332248279|ref|XP_003273292.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.5 [Nomascus
leucogenys]
Length = 324
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 233
>gi|397485850|ref|XP_003814051.1| PREDICTED: homeobox protein Nkx-2.5 [Pan paniscus]
Length = 325
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 -GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
G P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPPARRIAVPVLVRDGKPCLGD 234
>gi|311273897|ref|XP_003134089.1| PREDICTED: homeobox protein Nkx-2.5-like [Sus scrofa]
Length = 323
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 203
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 204 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 232
>gi|114603418|ref|XP_518104.2| PREDICTED: homeobox protein Nkx-2.5 isoform 3 [Pan troglodytes]
Length = 325
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 -GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
G P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPPARRIAVPVLVRDGKPCLGD 234
>gi|4104152|gb|AAD01958.1| homeodomain protein [Branchiostoma floridae]
Length = 312
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 70/110 (63%), Gaps = 14/110 (12%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQV 104
S+ PG QP +K++ R FS AQ YELE+RF Q+YLS PER +A+ ++LT TQV
Sbjct: 144 SSSPGGQGDQP---KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLARLIRLTPTQV 200
Query: 105 KIWFQNRRYKTKRKQLQLLEGSLNT-----PSAGNGKKVAVKILVRESHP 149
KIWFQN RYK KR Q EG ++T PS ++VAV +LVR+ P
Sbjct: 201 KIWFQNHRYKCKRAQ---KEGHMDTGLNPLPSP---RRVAVPVLVRDGKP 244
>gi|449272953|gb|EMC82602.1| Homeobox protein Nkx-2.5 [Columba livia]
Length = 299
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 62/96 (64%), Gaps = 12/96 (12%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 131 FSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 190
Query: 126 SLNTPSAGNGKKVAVKILVR-------ESHPYGSDY 154
P +++AV +LVR ES PY S Y
Sbjct: 191 VGIPPP----RRIAVPVLVRDGKPCLGESSPYSSPY 222
>gi|296193622|ref|XP_002744612.1| PREDICTED: homeobox protein Nkx-2.5 [Callithrix jacchus]
Length = 324
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 233
>gi|260788322|ref|XP_002589199.1| nk homeobox 2-2 [Branchiostoma floridae]
gi|229274374|gb|EEN45210.1| nk homeobox 2-2 [Branchiostoma floridae]
Length = 312
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 70/110 (63%), Gaps = 14/110 (12%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQV 104
S+ PG QP +K++ R FS AQ YELE+RF Q+YLS PER +A+ ++LT TQV
Sbjct: 144 SSSPGGQGDQP---KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLARLIRLTPTQV 200
Query: 105 KIWFQNRRYKTKRKQLQLLEGSLNT-----PSAGNGKKVAVKILVRESHP 149
KIWFQN RYK KR Q EG ++T PS ++VAV +LVR+ P
Sbjct: 201 KIWFQNHRYKCKRAQ---KEGHMDTGLNPLPSP---RRVAVPVLVRDGKP 244
>gi|114051604|ref|NP_001039908.1| homeobox protein Nkx-2.5 [Bos taurus]
gi|88954305|gb|AAI14090.1| NK2 transcription factor related, locus 5 (Drosophila) [Bos taurus]
gi|296475926|tpg|DAA18041.1| TPA: NK2 transcription factor related, locus 5 [Bos taurus]
gi|440902716|gb|ELR53471.1| Homeobox protein Nkx-2.5 [Bos grunniens mutus]
Length = 323
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 203
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 204 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 232
>gi|431918157|gb|ELK17385.1| Homeobox protein Nkx-2.5 [Pteropus alecto]
Length = 217
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 70/121 (57%), Gaps = 11/121 (9%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 39 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 98
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYPLFYNMHSL 185
P +++AV +LVR+ P G P AP+ L Y YN +S
Sbjct: 99 VGLPPPPPPARRIAVPVLVRDGKP--------CLGDSAPYAPAYGVGLNAYG--YNAYSA 148
Query: 186 Y 186
Y
Sbjct: 149 Y 149
>gi|344265734|ref|XP_003404937.1| PREDICTED: homeobox protein Nkx-2.5-like [Loxodonta africana]
Length = 291
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 203
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 204 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 232
>gi|351705480|gb|EHB08399.1| Homeobox protein Nkx-2.5 [Heterocephalus glaber]
Length = 324
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 -GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
G P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPPARRIAVPVLVRDGKPCLGD 234
>gi|6715494|gb|AAF26436.1|AF220096_1 homeobox protein Scarecrow, partial [Drosophila melanogaster]
Length = 380
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 84/147 (57%), Gaps = 19/147 (12%)
Query: 22 NTMSYYGK--KDIRDA--RDLPKPAA-----LSNLPGLAQS--------QPPTGRKKRSR 64
N+ S+YG D R A R + A+ + N+ GLA Q P ++++ R
Sbjct: 110 NSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRR 169
Query: 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR--KQLQL 122
F+ AQVYELE+RF Q+YLS PER +A + LT TQVKIWFQN RYK KR K+ +
Sbjct: 170 VLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKRKAM 229
Query: 123 LEGSLNTPSAGNGKKVAVKILVRESHP 149
E + + A + ++VAV +LV++ P
Sbjct: 230 AEQNQHNQPASSPRRVAVPVLVKDGKP 256
>gi|148236807|ref|NP_001080190.1| homeobox protein Nkx-2.5 [Xenopus laevis]
gi|33417122|gb|AAH56048.1| Nkx2.5 protein [Xenopus laevis]
Length = 299
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 62/96 (64%), Gaps = 12/96 (12%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 131 FSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 190
Query: 126 SLNTPSAGNGKKVAVKILVR-------ESHPYGSDY 154
P +++AV +LVR ES PY S Y
Sbjct: 191 VGLPPP----RRIAVPVLVRDGKPCLGESSPYNSPY 222
>gi|340719206|ref|XP_003398047.1| PREDICTED: hypothetical protein LOC100648138 [Bombus terrestris]
gi|350399041|ref|XP_003485395.1| PREDICTED: hypothetical protein LOC100741206 [Bombus impatiens]
Length = 301
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 9/130 (6%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
AQ +K++ R FS AQ +ELE+RF Q+YLS PER +A ++LT TQVKIWFQN
Sbjct: 177 AQPHETEHKKRKRRVLFSKAQTFELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQN 236
Query: 111 RRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYL----YGTQGKLLPPA 166
RYKTKR + +E S S + ++VAV +L+++ P S + Y + G++ P
Sbjct: 237 HRYKTKRAATERVEASG---SGCSPRRVAVPLLIKDGKPCQSKLMEPTTYPSTGQV--PM 291
Query: 167 PSMANSLYYY 176
P Y++
Sbjct: 292 PPYMQKPYWW 301
>gi|45384032|ref|NP_990495.1| homeobox protein Nkx-2.5 [Gallus gallus]
gi|3913866|sp|Q90788.1|NKX25_CHICK RecName: Full=Homeobox protein Nkx-2.5; Short=cNKx-2.5; AltName:
Full=Homeobox protein NK-2 homolog E
gi|1107568|emb|CAA62955.1| CNkx-2.5 protein [Gallus gallus]
Length = 294
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 62/96 (64%), Gaps = 12/96 (12%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 126 FSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 185
Query: 126 SLNTPSAGNGKKVAVKILVR-------ESHPYGSDY 154
P +++AV +LVR ES PY S Y
Sbjct: 186 VGIPPP----RRIAVPVLVRDGKPCLGESSPYSSPY 217
>gi|284795286|ref|NP_001165245.1| homeobox protein Nkx-2.5 [Taeniopygia guttata]
Length = 298
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 62/96 (64%), Gaps = 12/96 (12%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 133 FSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 192
Query: 126 SLNTPSAGNGKKVAVKILVR-------ESHPYGSDY 154
P +++AV +LVR ES PY S Y
Sbjct: 193 VGIPPP----RRIAVPVLVRDGKPCLGESSPYSSPY 224
>gi|6679068|ref|NP_032726.1| homeobox protein Nkx-2.5 [Mus musculus]
gi|1170294|sp|P42582.1|NKX25_MOUSE RecName: Full=Homeobox protein Nkx-2.5; AltName:
Full=Cardiac-specific homeobox; AltName: Full=Homeobox
protein CSX; AltName: Full=Homeobox protein NK-2 homolog
E
gi|2706485|emb|CAA53169.1| homeobox [Mus musculus]
gi|4050016|gb|AAC97934.1| homeobox protein NKX-2.5 [Mus musculus]
gi|74209095|dbj|BAE24947.1| unnamed protein product [Mus musculus]
gi|148690570|gb|EDL22517.1| NK2 transcription factor related, locus 5 (Drosophila) [Mus
musculus]
gi|223460028|gb|AAI39304.1| NK2 transcription factor related, locus 5 (Drosophila) [Mus
musculus]
gi|223460430|gb|AAI39300.1| NK2 transcription factor related, locus 5 (Drosophila) [Mus
musculus]
Length = 318
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLE- 202
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 203 -LLGPPPPPARRIAVPVLVRDGKPCLGD 229
>gi|1170295|sp|P42583.1|NKX25_XENLA RecName: Full=Homeobox protein Nkx-2.5; Short=xNKx-2.5; AltName:
Full=Homeobox protein NK-2 homolog E
gi|409373|gb|AAA19861.1| homeobox protein [Xenopus laevis]
Length = 299
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 62/96 (64%), Gaps = 12/96 (12%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 131 FSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 190
Query: 126 SLNTPSAGNGKKVAVKILVR-------ESHPYGSDY 154
P +++AV +LVR ES PY S Y
Sbjct: 191 VGLPPP----RRIAVPVLVRDGKPCLGESSPYNSPY 222
>gi|183986603|ref|NP_001116891.1| NK2 homeobox 5 [Xenopus (Silurana) tropicalis]
gi|169641872|gb|AAI60531.1| nkx2-5 protein [Xenopus (Silurana) tropicalis]
Length = 300
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 62/96 (64%), Gaps = 12/96 (12%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 132 FSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 191
Query: 126 SLNTPSAGNGKKVAVKILVR-------ESHPYGSDY 154
P +++AV +LVR ES PY S Y
Sbjct: 192 VGLPPP----RRIAVPVLVRDGKPCLGESSPYNSPY 223
>gi|58219496|ref|NP_001010959.1| homeobox protein Nkx-2.5 [Canis lupus familiaris]
gi|46487433|gb|AAS99114.1| transcription factor NKX2.5 [Canis lupus familiaris]
gi|77632509|gb|ABB00236.1| NKX2-5 [Canis lupus familiaris]
gi|85542661|gb|ABC71311.1| NKX2-5 [Canis lupus familiaris]
Length = 322
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 203
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSD 153
P +++AV +LVR+ P D
Sbjct: 204 VGLPPPPPPARRIAVPVLVRDGKPCLGD 231
>gi|301763106|ref|XP_002916971.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.5-like
[Ailuropoda melanoleuca]
Length = 315
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 143 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 202
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 203 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 231
>gi|307194610|gb|EFN76899.1| Homeobox protein Nkx-2.2a [Harpegnathos saltator]
Length = 308
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ +ELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 192 KKRKRRVLFSKAQTFELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQNHRYKTKRA 251
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGT 158
+ +E S S + ++VAV +LVR+ P S + T
Sbjct: 252 ANERVEASG---SGCSPRRVAVPVLVRDGKPCQSKMMEPT 288
>gi|288557276|ref|NP_001165663.1| NK2 homeobox 5 [Xenopus laevis]
gi|49615337|gb|AAT66927.1| NK-2 class homeodomain protein [Xenopus laevis]
Length = 300
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 62/96 (64%), Gaps = 12/96 (12%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 132 FSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 191
Query: 126 SLNTPSAGNGKKVAVKILVR-------ESHPYGSDY 154
P +++AV +LVR ES PY S Y
Sbjct: 192 VGLPPP----RRIAVPVLVRDGKPCLGESSPYNSPY 223
>gi|56684550|gb|AAW21973.1| ventral nerve cord defective protein [Tribolium castaneum]
Length = 168
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 48 PGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIW 107
P L Q +K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIW
Sbjct: 28 PHLTDQQASGHKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQVKIW 87
Query: 108 FQNRRYKTKRKQLQL-LEGSLNTPSAGNGKKVAVKILVRESHPYGS-DYLYGTQGKL-LP 164
FQN RYKTKR Q + + N + ++VAV +LVR+ P S + G L +P
Sbjct: 88 FQNHRYKTKRAQHEKGMHDQQNNNPLPSPRRVAVPVLVRDGKPCLSGGPKHPDPGSLQVP 147
Query: 165 PAPSMANSLYYYPLFYNMHSLY 186
AP M +S + PL Y ++
Sbjct: 148 GAPMMMSS--HGPLMYGQPRVW 167
>gi|348575229|ref|XP_003473392.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.5-like
[Cavia porcellus]
Length = 334
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 203
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 204 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 232
>gi|291387838|ref|XP_002710431.1| PREDICTED: NK2 transcription factor related, locus 5 [Oryctolagus
cuniculus]
Length = 326
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 147 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 206
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 207 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 235
>gi|149052223|gb|EDM04040.1| NK2 transcription factor related, locus 5 (Drosophila) [Rattus
norvegicus]
Length = 319
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLE- 202
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 203 -LLGPPPPPARRIAVPVLVRDGKPCLGD 229
>gi|270010999|gb|EFA07447.1| scarecrow [Tribolium castaneum]
Length = 324
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 10/115 (8%)
Query: 45 SNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKS 96
+ +PGL Q P ++++ R F+ AQVYELE+RF QKYLS PER +A
Sbjct: 143 TGMPGLGACAMPDSKPMQFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASL 202
Query: 97 LKLTETQVKIWFQNRRYKTKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR K+ + E + + S+ + ++VAV +LV++ P
Sbjct: 203 IHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSSSSPRRVAVPVLVKDGKP 257
>gi|307186341|gb|EFN71991.1| Homeobox protein Nkx-2.6 [Camponotus floridanus]
Length = 380
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A++LKLT TQVKIWFQ
Sbjct: 105 LRKSQSGKRTKRKPRVLFSQTQVYELEQRFKQQRYLSAPEREMLAQNLKLTSTQVKIWFQ 164
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
NRRYK KR +++ E L + N KK+ V IL+++ P
Sbjct: 165 NRRYKNKRARIEDAE-KLQAQNMKNQSLKKITVPILIKDGKP 205
>gi|397506202|ref|XP_003823620.1| PREDICTED: homeobox protein Nkx-2.6 [Pan paniscus]
Length = 303
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 66/100 (66%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP T ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 128 QPKTRQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRY 187
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+ L G TP ++VAV +LVR+ P
Sbjct: 188 KCKRQRQDKSLE-LAGHPLTP-----RRVAVPVLVRDGKP 221
>gi|332027912|gb|EGI67967.1| Homeobox protein Nkx-2.2a [Acromyrmex echinatior]
Length = 306
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 190 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQNHRYKTKRA 249
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGT 158
+ +E S + ++VAV +LVR+ P S + T
Sbjct: 250 ASERVEAG---GSGCSPRRVAVPVLVRDGKPCQSKLMEPT 286
>gi|345491036|ref|XP_001604550.2| PREDICTED: hypothetical protein LOC100120954 [Nasonia vitripennis]
Length = 381
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 244 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQNHRYKTKRA 303
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQG 160
+ +E + + + ++VAV +LVR+ P S L G
Sbjct: 304 ATERVEAAGSRLDC-SPRRVAVPVLVRDGKPCQSKLLEPCSG 344
>gi|47551239|ref|NP_999800.1| homeodomain protein NK2.1 [Strongylocentrotus purpuratus]
gi|22256006|gb|AAM94862.1| homeodomain protein NK2.1 [Strongylocentrotus purpuratus]
Length = 411
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 164 PSHRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLANLINLTPTQVKIWFQNHRYKM 222
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR+ + NT + ++VAV +LV++ P
Sbjct: 223 KRQTKEKNMQDNNTICHQSPRRVAVPVLVKDGKP 256
>gi|357616463|gb|EHJ70204.1| putative ventral nervous system defective [Danaus plexippus]
Length = 321
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 60/91 (65%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 193 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 252
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LN + ++VAV +LV++ P
Sbjct: 253 VQEKGAHDLNVGGLNSPRRVAVPVLVKDGRP 283
>gi|395505095|ref|XP_003756881.1| PREDICTED: homeobox protein Nkx-2.5 [Sarcophilus harrisii]
Length = 320
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 59/88 (67%), Gaps = 5/88 (5%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 152 FSQAQVYELERRFKQQKYLSAPERDHLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 211
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSD 153
P +++AV +LVR+ P D
Sbjct: 212 VGLPPP----RRIAVPVLVRDGKPCLGD 235
>gi|126290852|ref|XP_001370586.1| PREDICTED: homeobox protein Nkx-2.5 [Monodelphis domestica]
Length = 319
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 59/88 (67%), Gaps = 5/88 (5%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 151 FSQAQVYELERRFKQQKYLSAPERDHLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 210
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSD 153
P +++AV +LVR+ P D
Sbjct: 211 VGLPPP----RRIAVPVLVRDGKPCLGD 234
>gi|383856762|ref|XP_003703876.1| PREDICTED: homeobox protein Nkx-2.5-like [Megachile rotundata]
Length = 368
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A++LKLT TQVKIWFQ
Sbjct: 107 LRKSQSGKRTKRKPRVLFSQTQVYELEQRFKQQRYLSAPERELLAQTLKLTSTQVKIWFQ 166
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
NRRYK KR +L+ E L + N KK+ V +L+++ P
Sbjct: 167 NRRYKNKRARLEDAE-KLQAQNMKNQSLKKIHVPVLIKDGKP 207
>gi|34786941|emb|CAD37942.1| homeobox protein HOXb1 [Suberites domuncula]
Length = 345
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K+R RA FSHAQV+ELE+RF QKYL+ ER +A L LTETQVKIWFQNRRYK KR+
Sbjct: 152 KKRRPRALFSHAQVFELERRFAVQKYLTAHEREQLASMLHLTETQVKIWFQNRRYKNKRQ 211
Query: 119 QLQ 121
Q++
Sbjct: 212 QIE 214
>gi|380028573|ref|XP_003697970.1| PREDICTED: homeobox protein Nkx-2.3-like [Apis florea]
Length = 389
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L +SQ K++ R FS QVYELE+RF Q+YLS PER +A++LKLT TQVKIWFQ
Sbjct: 112 LRKSQSGKRTKRKPRVLFSQNQVYELEQRFKQQRYLSAPERELLAQTLKLTSTQVKIWFQ 171
Query: 110 NRRYKTKRKQLQLLEG-SLNTPSAGNGKKVAVKILVRESHP 149
NRRYK KR +L+ +E + + KK+ V +L+++ P
Sbjct: 172 NRRYKNKRARLEGVESLQAQNMKSQSLKKIHVPVLIKDGKP 212
>gi|355697806|gb|EHH28354.1| Homeobox protein NK-2-like protein F [Macaca mulatta]
Length = 301
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 10/105 (9%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWF
Sbjct: 121 GGCSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWF 180
Query: 109 QNRRYKTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
QNRRYK KR K L+ L G TP ++VAV +LVR+ P
Sbjct: 181 QNRRYKCKRQRQDKSLE-LAGHPLTP-----RRVAVPVLVRDGKP 219
>gi|322801377|gb|EFZ22038.1| hypothetical protein SINV_01291 [Solenopsis invicta]
Length = 276
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ +ELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 161 KKRKRRVLFSKAQTFELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQNHRYKTKRA 220
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGT 158
+ +E S + ++VAV +LVR+ P S + T
Sbjct: 221 ASERVEAGG---SGCSPRRVAVPVLVRDGKPCQSKLMEST 257
>gi|301620215|ref|XP_002939477.1| PREDICTED: homeobox protein Nkx-2.2a [Xenopus (Silurana)
tropicalis]
Length = 271
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P +G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK
Sbjct: 122 PDSGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYK 181
Query: 115 TKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR + E + + ++VAV +LVR+ P
Sbjct: 182 MKRAR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 213
>gi|148223758|ref|NP_001079091.1| homeobox protein XENK-2 [Xenopus laevis]
gi|1170326|sp|P42587.1|HNK2_XENLA RecName: Full=Homeobox protein XENK-2
gi|214622|gb|AAA72342.1| defines dorsal-ventral domains in developing brain [Xenopus laevis]
gi|9256349|gb|AAB28271.2| homeobox protein [Xenopus laevis]
Length = 196
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S P +G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN R
Sbjct: 62 SNPDSGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 121
Query: 113 YKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
YK KR + E + + ++VAV +LVR+ P
Sbjct: 122 YKMKRAR---SEKGMEVTPLPSPRRVAVPVLVRDGKP 155
>gi|327265234|ref|XP_003217413.1| PREDICTED: homeobox protein Nkx-2.5-like [Anolis carolinensis]
Length = 340
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQVYELE+RF QKYLS PER +A +LKL+ TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 146 FSQAQVYELERRFKQQKYLSAPERDHLASALKLSSTQVKIWFQNRRYKCKRQRQDQSLEM 205
Query: 125 -GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
G +++AV +LVR+ P D
Sbjct: 206 VGLHPAAPPPPPRRIAVPVLVRDGKPCLGD 235
>gi|61098047|ref|NP_001007783.2| NK2 transcription factor related 2b [Danio rerio]
gi|60551709|gb|AAH91555.1| NK2 transcription factor related 2b [Danio rerio]
gi|182889422|gb|AAI65075.1| Nkx2.2b protein [Danio rerio]
Length = 237
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 13/132 (9%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+G+K++ R FS Q +ELE+RF Q+YLS PER +AK L LT TQVKIWFQN RYK K
Sbjct: 92 SGKKRKRRILFSKTQTFELERRFRQQRYLSAPEREHLAKLLHLTPTQVKIWFQNHRYKVK 151
Query: 117 RKQLQL-LEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKL--LPP--APSMAN 171
R + + L+ L +P ++V++ +LVR+ P +L G Q +PP AP A
Sbjct: 152 RARAEKGLDPYLLSP-----RRVSIPVLVRDGRPC---HLLGPQDITASIPPATAPFTAF 203
Query: 172 SLYYYPLFYNMH 183
++ +P ++ H
Sbjct: 204 NMKPFPQIHHSH 215
>gi|344280114|ref|XP_003411830.1| PREDICTED: homeobox protein Nkx-2.4-like [Loxodonta africana]
Length = 172
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 65/98 (66%), Gaps = 12/98 (12%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 12 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 70
Query: 118 ------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+QLQ EGSL PS ++VAV +LV++ P
Sbjct: 71 AKDKAAQQLQ-QEGSLGPPSP---RRVAVPVLVKDGKP 104
>gi|52630886|gb|AAU84903.1| homeobox transcription factor Nkx2.2b [Danio rerio]
Length = 237
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 13/132 (9%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+G+K++ R FS Q +ELE+RF Q+YLS PER +AK L LT TQVKIWFQN RYK K
Sbjct: 92 SGKKRKRRILFSKTQTFELERRFRQQRYLSAPEREHLAKLLHLTPTQVKIWFQNHRYKVK 151
Query: 117 RKQLQL-LEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKL--LPP--APSMAN 171
R + + L+ L +P ++V++ +LVR+ P +L G Q +PP AP A
Sbjct: 152 RARAEKGLDPYLLSP-----RRVSIPVLVRDGRPC---HLLGPQDLTASIPPATAPFTAF 203
Query: 172 SLYYYPLFYNMH 183
++ +P ++ H
Sbjct: 204 NMKPFPQIHHSH 215
>gi|301605999|ref|XP_002932599.1| PREDICTED: homeobox protein Nkx-2.6 [Xenopus (Silurana) tropicalis]
Length = 254
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 63/92 (68%), Gaps = 5/92 (5%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
++++ R FS QV+ELE+RF Q+YLS PER +A +LKLT TQVKIWFQNRRYK KR
Sbjct: 93 QRRKPRVLFSQMQVFELERRFKQQRYLSAPEREQLALALKLTSTQVKIWFQNRRYKCKRQ 152
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KQ + LE P ++VAV +LVR+ P
Sbjct: 153 KQDRSLELGHPIPP----RRVAVPVLVRDGKP 180
>gi|395842409|ref|XP_003794010.1| PREDICTED: homeobox protein Nkx-2.6 [Otolemur garnettii]
Length = 300
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 69/102 (67%), Gaps = 3/102 (2%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G + QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWF
Sbjct: 121 GGSPEQPRVRQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWF 180
Query: 109 QNRRYKTKR-KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
QNRRYK KR +Q + LE + + P A ++VAV +LVR+ P
Sbjct: 181 QNRRYKCKRQRQDKSLELAGHHPLA--PRRVAVPVLVRDGKP 220
>gi|351703114|gb|EHB06033.1| Homeobox protein Nkx-2.6 [Heterocephalus glaber]
Length = 296
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 65/105 (61%), Gaps = 10/105 (9%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G+ QP T +++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWF
Sbjct: 120 GVGPEQPKTRPRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWF 179
Query: 109 QNRRYKTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
QNRRYK KR K L+L L ++VAV +LVR+ P
Sbjct: 180 QNRRYKCKRQRQDKSLELAGRPLAP------RRVAVPVLVRDGRP 218
>gi|354467548|ref|XP_003496231.1| PREDICTED: homeobox protein Nkx-2.6-like [Cricetulus griseus]
gi|344235876|gb|EGV91979.1| Homeobox protein Nkx-2.6 [Cricetulus griseus]
Length = 273
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 12/105 (11%)
Query: 48 PGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIW 107
PGLA+++P +++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIW
Sbjct: 104 PGLARTRP----RRKPRVLFSQAQVLALERRFRQQRYLSAPEREHLASALQLTSTQVKIW 159
Query: 108 FQNRRYKTKR-KQLQLLE--GSLNTPSAGNGKKVAVKILVRESHP 149
FQNRRYK KR +Q Q LE G TP ++V V +LV + P
Sbjct: 160 FQNRRYKCKRQRQDQTLELAGHPLTP-----RRVTVPVLVLDGKP 199
>gi|22087144|gb|AAM90855.1|AF482469_1 Amphink2-tin [Branchiostoma floridae]
Length = 285
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 76/123 (61%), Gaps = 17/123 (13%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL-QLLEG 125
FS AQV+ELE+RF Q+YLS PER +A+ LKLT TQVKIWFQNRRYK KR++ + LE
Sbjct: 131 FSQAQVFELERRFKQQRYLSAPEREQLAQMLKLTSTQVKIWFQNRRYKCKRQRTDKTLEL 190
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYPLFYNMHSL 185
+ P ++VAV +LVR+ P ++ PP S ++ P YNM+ +
Sbjct: 191 THPPP-----RRVAVPVLVRDGKP----------CQMTPPPYSAPYNVSVNPYGYNMN-V 234
Query: 186 YGT 188
+GT
Sbjct: 235 HGT 237
>gi|403260197|ref|XP_003922567.1| PREDICTED: homeobox protein Nkx-2.3 [Saimiri boliviensis
boliviensis]
Length = 256
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 75/133 (56%), Gaps = 11/133 (8%)
Query: 38 LPKP-AALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
L KP A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A
Sbjct: 124 LKKPLEAAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAS 183
Query: 96 SLKLTETQVKIWFQNRRYKTKR-KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDY 154
SLKLT TQVKIWFQNRRYK KR +Q + LE + G+ VR H G
Sbjct: 184 SLKLTSTQVKIWFQNRRYKCKRQRQDKSLELAFAPGCCSRGR-------VRSGHLAGHPG 236
Query: 155 LYGTQGKLLPPAP 167
L GT G++ AP
Sbjct: 237 LVGT-GRVTRQAP 248
>gi|255689724|gb|ACU30145.1| NK2 transcription factor locus 5-like protein [Monodelphis
domestica]
Length = 200
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 59/88 (67%), Gaps = 5/88 (5%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF QKYLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 42 FSQAQVYELERRFKQQKYLSAPERDHLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEM 101
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSD 153
P +++AV +LVR+ P D
Sbjct: 102 VGLPPP----RRIAVPVLVRDGKPCLGD 125
>gi|297299095|ref|XP_001108914.2| PREDICTED: homeobox protein Nkx-2.6-like [Macaca mulatta]
Length = 501
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 10/105 (9%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWF
Sbjct: 321 GGCSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWF 380
Query: 109 QNRRYKTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
QNRRYK KR K L+L G TP ++VAV +LVR+ P
Sbjct: 381 QNRRYKCKRQRQDKSLELA-GHPLTP-----RRVAVPVLVRDGKP 419
>gi|403290138|ref|XP_003936188.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.5 [Saimiri
boliviensis boliviensis]
Length = 317
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLE- 203
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSD 153
G ++AV +LVR+ P D
Sbjct: 204 -----LVGLPXRIAVPVLVRDGKPCLGD 226
>gi|260830975|ref|XP_002610435.1| nk homeobox 4 [Branchiostoma floridae]
gi|229295801|gb|EEN66445.1| nk homeobox 4 [Branchiostoma floridae]
Length = 285
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 76/123 (61%), Gaps = 17/123 (13%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL-QLLEG 125
FS AQV+ELE+RF Q+YLS PER +A+ LKLT TQVKIWFQNRRYK KR++ + LE
Sbjct: 131 FSQAQVFELERRFKQQRYLSAPEREQLAQMLKLTSTQVKIWFQNRRYKCKRQRTDKTLEL 190
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYPLFYNMHSL 185
+ P ++VAV +LVR+ P ++ PP S ++ P YNM+ +
Sbjct: 191 THPPP-----RRVAVPVLVRDGKP----------CQMTPPPYSAPYNVSVNPYGYNMN-V 234
Query: 186 YGT 188
+GT
Sbjct: 235 HGT 237
>gi|426359123|ref|XP_004046835.1| PREDICTED: homeobox protein Nkx-2.6 [Gorilla gorilla gorilla]
Length = 301
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 66/100 (66%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 126 QPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRY 185
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+L +L TP ++VAV +LVR+ P
Sbjct: 186 KCKRQRQDKSLELAGHTL-TP-----RRVAVPVLVRDGKP 219
>gi|199581463|gb|ACH89433.1| NK-like homeobox protein 2.2b [Capitella teleta]
Length = 221
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +KK+ R FS AQ YELE+RF Q+YLS PER +A L+LT TQVKIWFQN RYK
Sbjct: 62 PSAKKKKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASILRLTPTQVKIWFQNHRYKL 121
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K+ + E L+ ++VAV +LVR+ P
Sbjct: 122 KKAR---QEKGLDLTPLPAPRRVAVPVLVRDGKP 152
>gi|341957810|gb|AEL13771.1| Nk2-tin, partial [Branchiostoma floridae]
Length = 274
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 76/123 (61%), Gaps = 17/123 (13%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL-QLLEG 125
FS AQV+ELE+RF Q+YLS PER +A+ LKLT TQVKIWFQNRRYK KR++ + LE
Sbjct: 120 FSQAQVFELERRFKQQRYLSAPEREQLAQMLKLTSTQVKIWFQNRRYKCKRQRTDKTLEL 179
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYPLFYNMHSL 185
+ P ++VAV +LVR+ P ++ PP S ++ P YNM+ +
Sbjct: 180 THPPP-----RRVAVPVLVRDGKP----------CQMTPPPYSAPYNVSVNPYGYNMN-V 223
Query: 186 YGT 188
+GT
Sbjct: 224 HGT 226
>gi|410956224|ref|XP_003984743.1| PREDICTED: homeobox protein Nkx-2.6 [Felis catus]
Length = 244
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 53/72 (73%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G QP ++++ R FS AQV LE+RF Q+Y+S PER +A +LKLTETQVKIWF
Sbjct: 123 GTGPEQPKARQRRKPRVLFSQAQVLALERRFKQQRYVSAPEREHLASNLKLTETQVKIWF 182
Query: 109 QNRRYKTKRKQL 120
QNRRYKTKRKQL
Sbjct: 183 QNRRYKTKRKQL 194
>gi|328704473|ref|XP_001948777.2| PREDICTED: thyroid transcription factor 1-like [Acyrthosiphon
pisum]
Length = 355
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P T R+KR R F+ AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 161 PLTQRRKR-RVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQVKIWFQNHRYK 219
Query: 115 TKR--KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPY-GSDYLYGTQ 159
KR K+ + E + + + ++VAV +LV++ P G+ + G Q
Sbjct: 220 CKRQAKEKAMAEQNAQNQAQSSPRRVAVPVLVKDGKPCSGTSDVSGQQ 267
>gi|402873435|ref|XP_003900580.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.5 [Papio
anubis]
Length = 324
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE- 124
FS AQ YELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQXYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL 204
Query: 125 GSLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 205 VGLPPPPPPPARRIAVPVLVRDGKPCLGD 233
>gi|301620217|ref|XP_002939478.1| PREDICTED: homeobox protein Nkx-2.4-like [Xenopus (Silurana)
tropicalis]
Length = 343
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 69/118 (58%), Gaps = 11/118 (9%)
Query: 42 AALSNLPGLAQSQPPTG------RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
A + L G+A++ R+KR R FS AQVYELE+RF QKYLS PER +A
Sbjct: 137 AGMGTLQGIAEAAKSMAPLHAAPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLAS 195
Query: 96 SLKLTETQVKIWFQNRRYKTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR K Q L+ N + ++VAV +LV++ P
Sbjct: 196 MIHLTPTQVKIWFQNHRYKMKRQAKDKVTQQLQQESNLCQQQSPRRVAVPVLVKDGKP 253
>gi|402877779|ref|XP_003902594.1| PREDICTED: homeobox protein Nkx-2.6 [Papio anubis]
Length = 301
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 126 QPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRY 185
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+ L G TP ++VAV +LVR+ P
Sbjct: 186 KCKRQRQDKSLE-LAGHPLTP-----RRVAVPVLVRDGKP 219
>gi|34305637|gb|AAQ63625.1| NK-2 class homeodomain protein Nkx2-5 [Doryteuthis pealeii]
Length = 145
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 60/87 (68%), Gaps = 5/87 (5%)
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQL 122
R FS AQV+ELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q +
Sbjct: 1 RVLFSQAQVFELERRFKQQRYLSAPEREQLANMLKLTSTQVKIWFQNRRYKCKRQRQDKT 60
Query: 123 LEGSLNTPSAGNGKKVAVKILVRESHP 149
LE S P ++VAV +LVR+ P
Sbjct: 61 LEMSTLHPP----RRVAVPVLVRDGKP 83
>gi|157278563|ref|NP_001098382.1| Nkx2.5 protein [Oryzias latipes]
gi|124263644|gb|ABM97543.1| Nkx2.5 protein [Oryzias latipes]
Length = 320
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGS 126
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR Q + S
Sbjct: 151 FSQAQVYELERRFKQQRYLSAPERDHLASVLKLTPTQVKIWFQNRRYKCKR---QRQDQS 207
Query: 127 LNTPSAGNGKKVAVKILVRESHP 149
L S ++V+V +LVR+ P
Sbjct: 208 LEMVSLPPPRRVSVPVLVRDGKP 230
>gi|170057732|ref|XP_001864612.1| homeobox protein XENK-2 [Culex quinquefasciatus]
gi|167877074|gb|EDS40457.1| homeobox protein XENK-2 [Culex quinquefasciatus]
Length = 295
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 7/96 (7%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 159 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 218
Query: 119 QLQLLEGSLNTPSAGNG-----KKVAVKILVRESHP 149
+ +GS++ S G ++VAV +LVR+ P
Sbjct: 219 AHE--KGSMDVGSHQGGGLPSPRRVAVPVLVRDGKP 252
>gi|307180018|gb|EFN68094.1| Homeobox protein Nkx-2.2a [Camponotus floridanus]
Length = 303
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
AQ +K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN
Sbjct: 181 AQPHETEHKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQN 240
Query: 111 RRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
RYKTKR + +E S + ++VAV +LVR+ P
Sbjct: 241 HRYKTKRAASERVEAG---GSGCSPRRVAVPVLVRDGKP 276
>gi|348517401|ref|XP_003446222.1| PREDICTED: homeobox protein Nkx-2.4-like isoform 1 [Oreochromis
niloticus]
Length = 352
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 64/100 (64%), Gaps = 10/100 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 160 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 218
Query: 119 ---------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q Q +GSL A + ++VAV +LV++ P
Sbjct: 219 AKDKAAQQMQQQQQDGSLCQQQAQSPRRVAVPVLVKDGKP 258
>gi|410897629|ref|XP_003962301.1| PREDICTED: homeobox protein Nkx-2.1-like [Takifugu rubripes]
Length = 345
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 157 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 215
Query: 117 RK------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ Q Q+ + S + + ++VAV +LV++ P
Sbjct: 216 RQAKDKASQQQMQQDSGSCQQQQSPRRVAVPVLVKDGKP 254
>gi|348517403|ref|XP_003446223.1| PREDICTED: homeobox protein Nkx-2.4-like isoform 2 [Oreochromis
niloticus]
Length = 343
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 64/100 (64%), Gaps = 10/100 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 151 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 209
Query: 119 ---------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q Q +GSL A + ++VAV +LV++ P
Sbjct: 210 AKDKAAQQMQQQQQDGSLCQQQAQSPRRVAVPVLVKDGKP 249
>gi|332825797|ref|XP_519662.2| PREDICTED: homeobox protein Nkx-2.6 [Pan troglodytes]
Length = 301
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 126 QPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRY 185
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+ L G TP ++VAV +LVR+ P
Sbjct: 186 KCKRQRQDKSLE-LAGHPLTP-----RRVAVPVLVRDGKP 219
>gi|507131|gb|AAA20149.1| homeobox-containing protein, partial [Ephydatia fluviatilis]
Length = 118
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
Q +K+R RA FSHAQVYELE+RF QKYL+ E++ +A L LTETQVKIWFQNRRY
Sbjct: 26 QMSRHKKRRPRALFSHAQVYELERRFAVQKYLTAHEQSKLATVLHLTETQVKIWFQNRRY 85
Query: 114 KTKRKQLQ 121
K+KR+Q++
Sbjct: 86 KSKRQQIE 93
>gi|343183350|ref|NP_001129743.2| homeobox protein Nkx-2.6 [Homo sapiens]
gi|158513800|sp|A6NCS4.1|NKX26_HUMAN RecName: Full=Homeobox protein Nkx-2.6; AltName: Full=Homeobox
protein NK-2 homolog F
gi|208968633|dbj|BAG74155.1| NK2 transcription factor related, locus 6 [synthetic construct]
Length = 301
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 126 QPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRY 185
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+ L G TP ++VAV +LVR+ P
Sbjct: 186 KCKRQRQDKSLE-LAGHPLTP-----RRVAVPVLVRDGKP 219
>gi|297682497|ref|XP_002818955.1| PREDICTED: homeobox protein Nkx-2.6 [Pongo abelii]
Length = 301
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 126 QPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRY 185
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+ L G TP ++VAV +LVR+ P
Sbjct: 186 KCKRQRQDKSLE-LAGHPLTP-----RRVAVPVLVRDGKP 219
>gi|18859105|ref|NP_571494.1| NK2 transcription factor related 7 [Danio rerio]
gi|1518151|gb|AAC05230.1| homeodomain protein Nkx2.7 [Danio rerio]
Length = 269
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 7/104 (6%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
+ +P +++ R FS QV+ELE+RF Q+YLS PER +A +LKLT TQVKIWFQNR
Sbjct: 116 REKPKQRLRRKPRVLFSQTQVFELERRFKQQRYLSAPERDHLALALKLTSTQVKIWFQNR 175
Query: 112 RYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP-YGSDY 154
RYK KR Q + SL ++VAV +LVR+ P +G+ Y
Sbjct: 176 RYKCKR---QRQDKSLE---LAGPRRVAVPVLVRDGKPCHGAPY 213
>gi|426232307|ref|XP_004023242.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-3.2-like [Ovis
aries]
Length = 350
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 73/130 (56%), Gaps = 34/130 (26%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKKRSRAAFSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQ
Sbjct: 208 PKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQA----------- 256
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYY 175
P+A KKVAVK+LVR+ YL G L PP+ YY
Sbjct: 257 --------------PTA---KKVAVKVLVRDDQ---RQYLPGE--VLRPPSLLPLQPSYY 294
Query: 176 YPLFYNMHSL 185
YP +Y + L
Sbjct: 295 YP-YYCLPRL 303
>gi|194768421|ref|XP_001966310.1| GF22099 [Drosophila ananassae]
gi|190617074|gb|EDV32598.1| GF22099 [Drosophila ananassae]
Length = 751
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 576 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 635
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 636 QNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 682
>gi|431909507|gb|ELK12823.1| Homeobox protein Nkx-2.6 [Pteropus alecto]
Length = 351
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 11/103 (10%)
Query: 52 QSQPPTGR-KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+++PP R ++R R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQN
Sbjct: 175 RAEPPKERQRRRPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQN 234
Query: 111 RRYKTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
RRYK KR K L+L L ++VAV +LVR+ P
Sbjct: 235 RRYKCKRQRQDKSLELASHPLAP------RRVAVPVLVRDGKP 271
>gi|291385899|ref|XP_002709511.1| PREDICTED: NK2 transcription factor related, locus 6 [Oryctolagus
cuniculus]
Length = 303
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 63/99 (63%), Gaps = 11/99 (11%)
Query: 56 PTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P GR++R R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRYK
Sbjct: 134 PKGRQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYK 193
Query: 115 TKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR K L+L L ++VAV +LVR+ P
Sbjct: 194 CKRQRQDKSLELAGHPLAP------RRVAVPVLVRDGKP 226
>gi|18859101|ref|NP_571497.1| homeobox protein Nkx-2.2a [Danio rerio]
gi|6016204|sp|Q90481.1|NX22A_DANRE RecName: Full=Homeobox protein Nkx-2.2a; AltName: Full=Homeobox
protein NK-2 homolog B-A
gi|999449|emb|CAA59967.1| nk2.2 protein [Danio rerio]
gi|92096389|gb|AAI15167.1| NK2 transcription factor related 2a [Danio rerio]
Length = 269
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 8/130 (6%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK K
Sbjct: 122 SGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMK 181
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRE---SHPYGSDYLYGTQGKLLPPAPSMANSL 173
R + E + + ++VAV +LVR+ H + L T +P + A SL
Sbjct: 182 RAR---AEKGMEVTHLPSPRRVAVPVLVRDGKPCHTLKAQDLAATFQAGIPFSAYSAQSL 238
Query: 174 YYYPLFYNMH 183
+ + YN H
Sbjct: 239 QH--MQYNAH 246
>gi|338716660|ref|XP_003363483.1| PREDICTED: homeobox protein Nkx-2.3-like [Equus caballus]
Length = 251
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 70/109 (64%), Gaps = 5/109 (4%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 141 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 200
Query: 111 RRYKTKR-KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP--YGSDYLY 156
RRYK KR +Q + LE + P ++VA +L+R+ P D LY
Sbjct: 201 RRYKCKRQRQDKSLELGAHAPRP-PPRRVASPLLLRKIRPGFKAGDRLY 248
>gi|50926171|gb|AAH79493.1| NK2 transcription factor related 7 [Danio rerio]
Length = 269
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 7/104 (6%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
+ +P +++ R FS QV+ELE+RF Q+YLS PER +A +LKLT TQVKIWFQNR
Sbjct: 116 REKPKQRLRRKPRVLFSQTQVFELERRFKQQRYLSAPERDHLALALKLTSTQVKIWFQNR 175
Query: 112 RYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP-YGSDY 154
RYK KR Q + SL ++VAV +LVR+ P +G+ Y
Sbjct: 176 RYKCKR---QRQDKSLE---LAGPRRVAVPVLVRDGKPCHGAPY 213
>gi|195174027|ref|XP_002027784.1| GL21380 [Drosophila persimilis]
gi|194115456|gb|EDW37499.1| GL21380 [Drosophila persimilis]
Length = 740
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 11/106 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 561 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 620
Query: 119 QLQ-------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 621 QNEKGYEHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 666
>gi|114153393|gb|ABI52862.1| homeobox transcription factor [Danio rerio]
Length = 164
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 3/91 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ YELE+RF Q+YLS PER +A L+LT TQVKIWFQN RYK KR
Sbjct: 77 KRKKRRVLFSKAQTYELERRFRQQRYLSAPEREQLAHLLRLTPTQVKIWFQNHRYKMKRA 136
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+++ + LN P ++V V ILVR+ P
Sbjct: 137 RIECAQD-LNQPPV--LRRVVVPILVRDGKP 164
>gi|148222170|ref|NP_001079168.1| NK2 homeobox 6 [Xenopus laevis]
gi|4835851|gb|AAD30270.1|AF127224_1 homeodomain protein XNkx2-10 [Xenopus laevis]
Length = 263
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 8/94 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++++ R FS QV++LE+RF Q+YLS PER +A +LKLT TQVKIWFQNRRYK KR+
Sbjct: 99 QRRKPRVLFSQMQVFQLERRFKQQRYLSAPEREQLALALKLTSTQVKIWFQNRRYKCKRQ 158
Query: 119 QLQL---LEGSLNTPSAGNGKKVAVKILVRESHP 149
+ L L G P ++VAV +LVR+ P
Sbjct: 159 KQDLSLELAGHPIPP-----RRVAVPVLVRDGKP 187
>gi|348516735|ref|XP_003445893.1| PREDICTED: homeobox protein Nkx-2.5-like [Oreochromis niloticus]
Length = 319
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR KQ Q LE
Sbjct: 148 FSQAQVYELERRFKQQRYLSAPERDHLAGVLKLTPTQVKIWFQNRRYKCKRQKQDQSLEM 207
Query: 126 -SLNTPSAGNGKKVAVKILVRESHP 149
SL P ++V+V +LVR+ P
Sbjct: 208 VSLPPP-----RRVSVPVLVRDGKP 227
>gi|195394133|ref|XP_002055700.1| GJ19505 [Drosophila virilis]
gi|194150210|gb|EDW65901.1| GJ19505 [Drosophila virilis]
Length = 713
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 11/106 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 546 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 605
Query: 119 QLQ-------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 606 QNEKGYEHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 651
>gi|443709718|gb|ELU04267.1| hypothetical protein CAPTEDRAFT_221803 [Capitella teleta]
Length = 374
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK+ R FS AQ +ELEKRF Q+YLS PER +A L+LT TQVKIWFQN RYK K+
Sbjct: 183 KKKKRRVLFSKAQTFELEKRFRQQRYLSAPEREHLASILRLTPTQVKIWFQNHRYKLKKA 242
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPP 165
+ + +G TP ++VAV +LVR+ P G G ++ P
Sbjct: 243 RQE--KGMDMTPLPAP-RRVAVPVLVRDGKPCQPQMNGGGSGCMMKP 286
>gi|199581461|gb|ACH89432.1| NK-like homeobox protein 2.2a [Capitella teleta]
Length = 256
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 85/157 (54%), Gaps = 6/157 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK+ R FS AQ +ELEKRF Q+YLS PER +A L+LT TQVKIWFQN RYK K+
Sbjct: 65 KKKKRRVLFSKAQTFELEKRFRQQRYLSAPEREHLASILRLTPTQVKIWFQNHRYKLKKA 124
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSM-ANSLYYYP 177
+ + +G TP ++VAV +LVR+ P G G ++ P M N + Y
Sbjct: 125 RQE--KGMDMTPLPAP-RRVAVPVLVRDGKPCQPQMNGGGSGCMMKPHEMMQQNDMNNYG 181
Query: 178 LFYNMHSLYGTQGKLLPPA-PSMANSLYYYPLFYNMH 213
Y + G+Q +P A P +++ NMH
Sbjct: 182 GHYGT-CMTGSQLTAMPGAMPPTGSNVACMSQSQNMH 217
>gi|147900963|ref|NP_001089854.1| uncharacterized protein LOC734920 [Xenopus laevis]
gi|80477175|gb|AAI08550.1| MGC131011 protein [Xenopus laevis]
Length = 337
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 158 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 216
Query: 118 ---KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K Q L+ N + ++VAV +LV++ P
Sbjct: 217 AKDKVTQQLQQDNNLCQQQSPRRVAVPVLVKDGKP 251
>gi|392339585|ref|XP_001055558.3| PREDICTED: homeobox protein Nkx-2.4 [Rattus norvegicus]
gi|392346768|ref|XP_345446.3| PREDICTED: homeobox protein Nkx-2.4 [Rattus norvegicus]
Length = 353
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 75/127 (59%), Gaps = 14/127 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 187 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 245
Query: 118 ------KQLQLLEGSLN---TPSAGNGKKVAVKILVRESHPY--GSDYLYGTQGKLLPPA 166
+QLQ EG L P + ++VAV +LV++ P G+ QG P A
Sbjct: 246 AKDKAAQQLQ-QEGGLGPPPPPPPPSPRRVAVPVLVKDGKPCQNGAGTPTPGQGGQQPQA 304
Query: 167 PSMANSL 173
P+ A+ L
Sbjct: 305 PTPASEL 311
>gi|296221749|ref|XP_002756881.1| PREDICTED: homeobox protein Nkx-2.6 [Callithrix jacchus]
Length = 301
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 126 QPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRY 185
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+L L ++VAV +LVR+ P
Sbjct: 186 KCKRQRQDKSLELAGHPLAP------RRVAVPVLVRDGKP 219
>gi|410914162|ref|XP_003970557.1| PREDICTED: homeobox protein Nkx-2.5-like [Takifugu rubripes]
Length = 322
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGS 126
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR Q + S
Sbjct: 152 FSQAQVYELERRFKQQRYLSAPERDHLAGVLKLTPTQVKIWFQNRRYKCKR---QRQDQS 208
Query: 127 LNTPSAGNGKKVAVKILVRESHP 149
L S ++V+V +LVR+ P
Sbjct: 209 LEMVSLPPPRRVSVPVLVRDGKP 231
>gi|148232150|ref|NP_001082031.1| NK2 homeobox 4 [Xenopus laevis]
gi|10442648|gb|AAG17404.1|AF281079_1 homeobox protein Nkx2-4 [Xenopus laevis]
gi|213623574|gb|AAI69924.1| Homeobox protein Nkx2-4 [Xenopus laevis]
gi|213623580|gb|AAI69928.1| Homeobox protein Nkx2-4 [Xenopus laevis]
Length = 336
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 157 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 215
Query: 118 ---KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K Q L N + ++VAV +LV++ P
Sbjct: 216 AKDKVTQQLHQESNLCQQQSPRRVAVPVLVKDGKP 250
>gi|194208260|ref|XP_001914925.1| PREDICTED: homeobox protein Nkx-2.6-like [Equus caballus]
Length = 290
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 64/102 (62%), Gaps = 10/102 (9%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
+ QP +++R R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNR
Sbjct: 115 REQPGARQRRRPRVLFSQAQVLALERRFKQQRYLSAPEREHLAGALQLTSTQVKIWFQNR 174
Query: 112 RYKTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
RYK KR K L+L L ++VAV +LVR+ P
Sbjct: 175 RYKCKRQRQDKSLELAGHPLAP------RRVAVPVLVRDGKP 210
>gi|116007116|ref|NP_001036253.1| ventral nervous system defective, isoform B [Drosophila
melanogaster]
gi|113193578|gb|ABI30961.1| ventral nervous system defective, isoform B [Drosophila
melanogaster]
Length = 577
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 398 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 457
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 458 QNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 504
>gi|1041925|gb|AAB34960.1| homeobox gene [Drosophila sp.]
Length = 723
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 544 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 603
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 604 QNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 650
>gi|195439090|ref|XP_002067464.1| GK16436 [Drosophila willistoni]
gi|194163549|gb|EDW78450.1| GK16436 [Drosophila willistoni]
Length = 787
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 62/103 (60%), Gaps = 12/103 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 612 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 671
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHP 149
Q + LL G P + ++VAV +LVR P
Sbjct: 672 QNEKGYESHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKP 714
>gi|3929674|emb|CAA21410.1| EG:118B3.1 [Drosophila melanogaster]
Length = 723
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 544 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 603
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 604 QNEKGYDGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 650
>gi|198467785|ref|XP_001354499.2| vnd [Drosophila pseudoobscura pseudoobscura]
gi|198146107|gb|EAL31552.2| vnd [Drosophila pseudoobscura pseudoobscura]
Length = 740
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 11/106 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 561 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 620
Query: 119 QLQ-------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 621 QNEKGYEHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 666
>gi|301611750|ref|XP_002935383.1| PREDICTED: thyroid transcription factor 1 isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 346
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 160 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 218
Query: 117 RK------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ Q Q+ + + + + ++VAV +LV++ P
Sbjct: 219 RQAKDKAAQQQMQQDNSSCQQQQSPRRVAVPVLVKDGKP 257
>gi|24638894|ref|NP_476786.2| ventral nervous system defective, isoform A [Drosophila
melanogaster]
gi|47117833|sp|P22808.3|VND_DROME RecName: Full=Homeobox protein vnd; AltName: Full=Homeobox protein
NK-2; AltName: Full=Protein ventral nervous system
defective
gi|7290055|gb|AAF45521.1| ventral nervous system defective, isoform A [Drosophila
melanogaster]
Length = 723
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 544 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 603
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 604 QNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 650
>gi|301611752|ref|XP_002935384.1| PREDICTED: thyroid transcription factor 1 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 339
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 153 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 211
Query: 117 RK------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ Q Q+ + + + + ++VAV +LV++ P
Sbjct: 212 RQAKDKAAQQQMQQDNSSCQQQQSPRRVAVPVLVKDGKP 250
>gi|1045048|emb|CAA60619.1| VND (ventral nervous system defective) [Drosophila melanogaster]
Length = 722
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 543 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 602
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 603 QNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 649
>gi|194911945|ref|XP_001982405.1| GG12796 [Drosophila erecta]
gi|190648081|gb|EDV45374.1| GG12796 [Drosophila erecta]
Length = 735
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 562 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 621
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 622 QNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 668
>gi|126303627|ref|XP_001373956.1| PREDICTED: homeobox protein Nkx-2.2-like [Monodelphis domestica]
Length = 273
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|281353535|gb|EFB29119.1| hypothetical protein PANDA_013648 [Ailuropoda melanoleuca]
Length = 216
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 38 LPKP-AALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKS 96
L KP A + +S+ P +++ R FS AQV+ELE+RF Q+YLS PER +A S
Sbjct: 125 LKKPLEAAGDCKAAEESERPKSSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASS 184
Query: 97 LKLTETQVKIWFQNRRYKTKRKQ 119
LKLT TQVKIWFQNRRYK KR++
Sbjct: 185 LKLTSTQVKIWFQNRRYKCKRQR 207
>gi|403283595|ref|XP_003933200.1| PREDICTED: homeobox protein Nkx-2.2, partial [Saimiri boliviensis
boliviensis]
Length = 270
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|195564443|ref|XP_002105828.1| GD16514 [Drosophila simulans]
gi|194203189|gb|EDX16765.1| GD16514 [Drosophila simulans]
Length = 723
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 544 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 603
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 604 QNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 650
>gi|147900027|ref|NP_001079093.1| NK2 homeobox 1 [Xenopus laevis]
gi|10442650|gb|AAG17405.1|AF281080_1 homeobox transcription factor Nkx2-1 [Xenopus laevis]
gi|213626679|gb|AAI69868.1| Thyroid transcription factor 1 [Xenopus laevis]
Length = 347
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 161 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 219
Query: 117 RK------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ Q Q+ + + + + ++VAV +LV++ P
Sbjct: 220 RQAKDKASQQQIQQDNSSCQQQQSPRRVAVPVLVKDGKP 258
>gi|328780989|ref|XP_001121493.2| PREDICTED: homeobox protein Nkx-2.5-like [Apis mellifera]
Length = 299
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 18/125 (14%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ +ELE+RF QKYLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 186 KKRKRRVLFSKAQTFELERRFRQQKYLSAPEREHLASIIRLTPTQVKIWFQNHRYKTKRA 245
Query: 119 QLQLLEGSLNTPSAGNG---KKVAVKILVRESHPYGSDYL----YGTQGKLLPPAPSMAN 171
T ++G+G ++VAV +L+++ P S + Y G++ P P
Sbjct: 246 ---------ATEASGSGCSPRRVAVPLLIKDGKPCQSKLMEPATYPATGQV--PMPPYIQ 294
Query: 172 SLYYY 176
Y++
Sbjct: 295 KPYWW 299
>gi|14578836|gb|AAK69025.1|AF250347_1 transcription factor NKX-2.1 [Xenopus laevis]
Length = 347
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 161 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 219
Query: 117 RK------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ Q Q+ + + + + ++VAV +LV++ P
Sbjct: 220 RQAKDKASQQQMQQDNSSCQQQQSPRRVAVPVLVKDGKP 258
>gi|395507771|ref|XP_003758194.1| PREDICTED: homeobox protein Nkx-2.2 [Sarcophilus harrisii]
Length = 273
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|351715915|gb|EHB18834.1| Homeobox protein Nkx-2.2 [Heterocephalus glaber]
Length = 273
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|157137267|ref|XP_001663964.1| homeobox protein nk-2 [Aedes aegypti]
gi|108869749|gb|EAT33974.1| AAEL013760-PA [Aedes aegypti]
Length = 451
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 57/91 (62%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS Q YELE+RF +YLS PER +A + LT TQVKIWFQN RYKTKR
Sbjct: 294 KKRKRRILFSKTQTYELERRFKQTRYLSAPEREHLANMIHLTPTQVKIWFQNHRYKTKRA 353
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q++ S + K++ V +LVR+ P
Sbjct: 354 QIEKSSTSFAHQIGSSPKRINVPVLVRDGKP 384
>gi|6754860|ref|NP_035049.1| homeobox protein Nkx-2.2 isoform 1 [Mus musculus]
gi|1708210|sp|P42586.2|NKX22_MOUSE RecName: Full=Homeobox protein Nkx-2.2; AltName: Full=Homeobox
protein NK-2 homolog B
gi|1019864|gb|AAA79303.1| homeodomain protein [Mus musculus]
gi|74187768|dbj|BAE24543.1| unnamed protein product [Mus musculus]
gi|187952829|gb|AAI38161.1| Nkx2-2 protein [Mus musculus]
gi|187953829|gb|AAI38160.1| Nkx2-2 protein [Mus musculus]
gi|1587713|prf||2207236A nkx-2.2 gene
Length = 273
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|327270680|ref|XP_003220117.1| PREDICTED: homeobox protein Nkx-2.2-like [Anolis carolinensis]
Length = 277
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK K
Sbjct: 128 SGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMK 187
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R + E + + ++VAV +LVR+ P
Sbjct: 188 RAR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 217
>gi|300793645|ref|NP_001178833.1| NK2 homeobox 2 [Rattus norvegicus]
Length = 273
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|410954449|ref|XP_003983877.1| PREDICTED: homeobox protein Nkx-2.2 [Felis catus]
Length = 273
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|344279959|ref|XP_003411753.1| PREDICTED: homeobox protein Nkx-2.2-like [Loxodonta africana]
Length = 273
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|332238210|ref|XP_003268296.1| PREDICTED: homeobox protein Nkx-2.2 [Nomascus leucogenys]
Length = 273
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|195347406|ref|XP_002040244.1| GM19075 [Drosophila sechellia]
gi|194121672|gb|EDW43715.1| GM19075 [Drosophila sechellia]
Length = 723
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 544 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 603
Query: 119 QLQ--------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 604 QNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD 650
>gi|185135921|ref|NP_001117695.1| transcription factor Nkx2.1c [Oncorhynchus mykiss]
gi|62241056|dbj|BAD93685.1| transcription factor Nkx2.1c [Oncorhynchus mykiss]
Length = 344
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 64/98 (65%), Gaps = 9/98 (9%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 158 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 216
Query: 118 ------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+Q+Q GS+ + + ++VAV +LV++ P
Sbjct: 217 AKDKANQQIQQENGSVCSQQQ-SPRRVAVPVLVKDGKP 253
>gi|242010665|ref|XP_002426081.1| Ptx1 homeodomain protein, putative [Pediculus humanus corporis]
gi|212510109|gb|EEB13343.1| Ptx1 homeodomain protein, putative [Pediculus humanus corporis]
Length = 415
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P T R+KR R F+ AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 199 PLTQRRKR-RVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQVKIWFQNHRYK 257
Query: 115 TKR--KQLQLLEGS-LNTPSAGNGKKVAVKILVRESHP 149
KR K+ + E S S + ++VAV +LV++ P
Sbjct: 258 CKRQAKEKAMAEQSAAQNQSQSSPRRVAVPVLVKDGKP 295
>gi|431894119|gb|ELK03919.1| Homeobox protein Nkx-2.2 [Pteropus alecto]
Length = 272
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 125 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 184
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 185 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 213
>gi|296200324|ref|XP_002747537.1| PREDICTED: homeobox protein Nkx-2.2 [Callithrix jacchus]
Length = 273
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|348581456|ref|XP_003476493.1| PREDICTED: homeobox protein Nkx-2.2-like [Cavia porcellus]
Length = 273
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|297706469|ref|XP_002830056.1| PREDICTED: homeobox protein Nkx-2.2 [Pongo abelii]
Length = 273
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|403292380|ref|XP_003937226.1| PREDICTED: homeobox protein Nkx-2.6 [Saimiri boliviensis
boliviensis]
Length = 301
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 126 QPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRY 185
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+L L ++VAV +LVR+ P
Sbjct: 186 KCKRQRQDKSLELAGHPLAP------RRVAVPVLVRDGKP 219
>gi|73991137|ref|XP_542867.2| PREDICTED: homeobox protein Nkx-2.2 [Canis lupus familiaris]
Length = 273
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|4505401|ref|NP_002500.1| homeobox protein Nkx-2.2 [Homo sapiens]
gi|109093082|ref|XP_001094853.1| PREDICTED: homeobox protein Nkx-2.2 [Macaca mulatta]
gi|114681236|ref|XP_525279.2| PREDICTED: homeobox protein Nkx-2.2 [Pan troglodytes]
gi|397478699|ref|XP_003810677.1| PREDICTED: homeobox protein Nkx-2.2 [Pan paniscus]
gi|402883359|ref|XP_003905187.1| PREDICTED: homeobox protein Nkx-2.2 [Papio anubis]
gi|426391122|ref|XP_004061933.1| PREDICTED: homeobox protein Nkx-2.2 [Gorilla gorilla gorilla]
gi|6016205|sp|O95096.1|NKX22_HUMAN RecName: Full=Homeobox protein Nkx-2.2; AltName: Full=Homeobox
protein NK-2 homolog B
gi|3955195|gb|AAC83132.1| homeodomain protein [Homo sapiens]
gi|49902428|gb|AAH75093.1| NK2 homeobox 2 [Homo sapiens]
gi|49902617|gb|AAH75092.1| NK2 homeobox 2 [Homo sapiens]
gi|119630588|gb|EAX10183.1| NK2 transcription factor related, locus 2 (Drosophila) [Homo
sapiens]
gi|167773471|gb|ABZ92170.1| NK2 homeobox 2 [synthetic construct]
gi|208968629|dbj|BAG74153.1| NK2 homeobox 2 [synthetic construct]
gi|355563403|gb|EHH19965.1| Homeobox protein NK-2-like protein B [Macaca mulatta]
gi|355784743|gb|EHH65594.1| Homeobox protein NK-2-like protein B [Macaca fascicularis]
Length = 273
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|391348735|ref|XP_003748599.1| PREDICTED: homeobox protein koza-like [Metaseiulus occidentalis]
Length = 360
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 65/104 (62%), Gaps = 13/104 (12%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
LPG Q +K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKI
Sbjct: 233 LPGGVQ------KKRKRRVLFSKAQTYELERRFKQQRYLSAPEREHLASMIRLTPTQVKI 286
Query: 107 WFQNRRYKTKRKQLQLLEGSLNTPSAGN----GKKVAVKILVRE 146
WFQN RYKT+R + EG P + N ++VAV +LVR+
Sbjct: 287 WFQNHRYKTRRAR---QEGGYGEPQSSNPLPSPRRVAVPVLVRD 327
>gi|149733030|ref|XP_001489223.1| PREDICTED: homeobox protein Nkx-2.2-like [Equus caballus]
Length = 273
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|300794380|ref|NP_001179638.1| homeobox protein Nkx-2.2 [Bos taurus]
gi|296481415|tpg|DAA23530.1| TPA: NK2 transcription factor related, locus 2-like [Bos taurus]
gi|440911590|gb|ELR61239.1| Homeobox protein Nkx-2.2 [Bos grunniens mutus]
Length = 273
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|199581459|gb|ACH89431.1| NK-like homeobox protein 2.1b [Capitella teleta]
Length = 428
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 4/99 (4%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R F+ AQ+YELE+RF QKYLS PER +A + LT TQVKIWFQN RYKTK
Sbjct: 221 TQRRKR-RILFTQAQIYELERRFKQQKYLSAPEREHLASMIGLTPTQVKIWFQNHRYKTK 279
Query: 117 RKQL---QLLEGSLNTPSAGNGKKVAVKILVRESHPYGS 152
+ Q ++ + S + K+VAV +LV++ P G+
Sbjct: 280 KSQKDKDKVDHSQQHKQSPPSPKRVAVPVLVKDGKPCGT 318
>gi|449502604|ref|XP_002199823.2| PREDICTED: thyroid transcription factor 1-like [Taeniopygia
guttata]
Length = 345
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 157 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 215
Query: 117 RK------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ Q Q+ + + + + ++VAV +LV++ P
Sbjct: 216 RQAKDKAAQQQMQQENGSCQQQQSPRRVAVPVLVKDGKP 254
>gi|395851969|ref|XP_003798519.1| PREDICTED: homeobox protein Nkx-2.2 [Otolemur garnettii]
Length = 273
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|335304536|ref|XP_003359963.1| PREDICTED: homeobox protein Nkx-2.2-like [Sus scrofa]
Length = 273
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|345790549|ref|XP_543239.3| PREDICTED: homeobox protein Nkx-2.6 [Canis lupus familiaris]
Length = 307
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 63/100 (63%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP +++R R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 134 QPKERQRRRPRVLFSQAQVLALERRFKQQRYLSAPEREHLAGALQLTPTQVKIWFQNRRY 193
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+L L ++VAV +LVR+ P
Sbjct: 194 KCKRQRQDKSLELAGHPLAP------RRVAVPVLVRDGKP 227
>gi|47219536|emb|CAG09890.1| unnamed protein product [Tetraodon nigroviridis]
Length = 353
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 10/100 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 161 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 219
Query: 119 ---------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q Q +G+L A + ++VAV +LV++ P
Sbjct: 220 AKDKAAQQLQQQQQDGNLCQQQAQSPRRVAVPVLVKDGKP 259
>gi|291388946|ref|XP_002710987.1| PREDICTED: NK2 transcription factor related, locus 2 [Oryctolagus
cuniculus]
Length = 273
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 214
>gi|380799963|gb|AFE71857.1| homeobox protein Nkx-2.2, partial [Macaca mulatta]
Length = 269
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK K
Sbjct: 121 AGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMK 180
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R + E + + ++VAV +LVR+ P
Sbjct: 181 RAR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 210
>gi|363746931|ref|XP_003643855.1| PREDICTED: homeobox protein Nkx-2.2 [Gallus gallus]
Length = 272
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 125 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 184
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 185 AR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 213
>gi|242018180|ref|XP_002429558.1| Homeobox protein Nkx-2.5, putative [Pediculus humanus corporis]
gi|212514512|gb|EEB16820.1| Homeobox protein Nkx-2.5, putative [Pediculus humanus corporis]
Length = 218
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 54 QPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
+P G+ KR R FS AQVYELE+RF Q+YLS PER +A+ LKL+ TQVKIWFQNRR
Sbjct: 67 KPLKGKIKRKPRILFSQAQVYELERRFKEQRYLSAPEREHMAQQLKLSSTQVKIWFQNRR 126
Query: 113 YKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
YK KR Q S + K+V+V +LV P
Sbjct: 127 YKNKR---QFCCNSDDKIINKQPKRVSVSLLVHNGKP 160
>gi|374277732|gb|AEZ03832.1| NK2.1 [Terebratalia transversa]
Length = 323
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 5/97 (5%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 156 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMINLTPTQVKIWFQNHRYKCKRA 214
Query: 118 ---KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYG 151
K+ S+ + +KVAV +LV++ P G
Sbjct: 215 LKDKEKDGSRDGTTGRSSSSPRKVAVPVLVKDGKPCG 251
>gi|281350740|gb|EFB26324.1| hypothetical protein PANDA_002742 [Ailuropoda melanoleuca]
Length = 245
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 129 QPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTPTQVKIWFQNRRY 188
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+L L ++VAV +LVR+ P
Sbjct: 189 KCKRQRQDKSLELAGHPLAP------RRVAVPVLVRDGKP 222
>gi|449274774|gb|EMC83852.1| Thyroid transcription factor 1, partial [Columba livia]
Length = 346
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 158 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 216
Query: 117 RK------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ Q Q+ + + + + ++VAV +LV++ P
Sbjct: 217 RQAKDKAAQQQMQQENGSCQQQQSPRRVAVPVLVKDGKP 255
>gi|149041184|gb|EDL95117.1| rCG63273 [Rattus norvegicus]
Length = 488
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 75/127 (59%), Gaps = 14/127 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 322 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 380
Query: 118 ------KQLQLLEGSLN---TPSAGNGKKVAVKILVRESHPY--GSDYLYGTQGKLLPPA 166
+QLQ EG L P + ++VAV +LV++ P G+ QG P A
Sbjct: 381 AKDKAAQQLQ-QEGGLGPPPPPPPPSPRRVAVPVLVKDGKPCQNGAGTPTPGQGGQQPQA 439
Query: 167 PSMANSL 173
P+ A+ L
Sbjct: 440 PTPASEL 446
>gi|332247553|ref|XP_003272924.1| PREDICTED: homeobox protein Nkx-2.6 [Nomascus leucogenys]
Length = 301
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 10/100 (10%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP ++++ R FS QV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRY
Sbjct: 126 QPKARQRRKPRVLFSQTQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRY 185
Query: 114 KTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K KR K L+ L G TP ++VAV +LVR+ P
Sbjct: 186 KCKRQRQDKSLE-LAGHPLTP-----RRVAVPVLVRDGKP 219
>gi|28202073|ref|NP_075993.1| homeobox protein Nkx-2.4 [Mus musculus]
gi|27923816|sp|Q9EQM3.2|NKX24_MOUSE RecName: Full=Homeobox protein Nkx-2.4; AltName: Full=Homeobox
protein NK-2 homolog D
gi|11493714|gb|AAG35618.1|AF202038_1 homeobox transcription factor [Mus musculus]
gi|157169778|gb|AAI52744.1| NK2 transcription factor related, locus 4 (Drosophila) [synthetic
construct]
Length = 354
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 74/127 (58%), Gaps = 14/127 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 188 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 246
Query: 118 ------KQLQLLEGSLN---TPSAGNGKKVAVKILVRESHPY--GSDYLYGTQGKLLPPA 166
+QLQ EG L P + ++VAV +LV++ P G+ QG P A
Sbjct: 247 AKDKAAQQLQ-QEGGLGPPPPPPPPSPRRVAVPVLVKDGKPCQNGAGTPTPGQGGQQPQA 305
Query: 167 PSMANSL 173
P+ A L
Sbjct: 306 PTPAPEL 312
>gi|4151942|gb|AAD04631.1| homeodomain protein [Gallus gallus]
Length = 322
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 63/101 (62%), Gaps = 11/101 (10%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 134 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 192
Query: 117 R--------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R +Q+Q GS + ++VAV +LV++ P
Sbjct: 193 RQAKDKAAQQQMQQENGSCQQQQS--PRRVAVPVLVKDGKP 231
>gi|380025347|ref|XP_003696436.1| PREDICTED: homeobox protein Nkx-2.1-like [Apis florea]
Length = 476
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R F+ QV+ELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 293 RRKR-RVLFTQQQVHELERRFKQQKYLSAPEREHLAALIHLTPTQVKIWFQNHRYKCKRQ 351
Query: 118 -KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K+ + E + SA + ++VAV +LV++ P
Sbjct: 352 AKEKAMAEQNAQNQSASSPRRVAVPVLVKDGKP 384
>gi|185136009|ref|NP_001117696.1| NK2 homeobox 1b [Oncorhynchus mykiss]
gi|62241058|dbj|BAD93686.1| transcription factor Nkx2.1b [Oncorhynchus mykiss]
Length = 344
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 63/96 (65%), Gaps = 6/96 (6%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + L+ TQVKIWFQN RYK KR+
Sbjct: 158 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLSPTQVKIWFQNHRYKMKRQ 216
Query: 119 Q-----LQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
LQ+ + + N + ++VAV +LV++ P
Sbjct: 217 AKDKATLQIQQENGNVCPQQSPRRVAVPVLVKDGKP 252
>gi|237874187|ref|NP_001153856.1| homeobox protein Nkx-2.4 isoform 2 [Danio rerio]
gi|190336795|gb|AAI62246.1| LOC100148014 protein [Danio rerio]
gi|190339077|gb|AAI62251.1| LOC100148014 protein [Danio rerio]
Length = 336
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 73/120 (60%), Gaps = 16/120 (13%)
Query: 43 ALSNLPGLA---QSQPP---TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKS 96
+ L G+A +S PP R+KR R FS AQVYELE+RF QKYLS PER +A
Sbjct: 129 GMGTLTGMADTTKSIPPLHAAPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASM 187
Query: 97 LKLTETQVKIWFQNRRYKTKR-------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR +QLQ EG+L + ++VAV +LV++ P
Sbjct: 188 IHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQ-QEGNL-CQQQQSPRRVAVPVLVKDGKP 245
>gi|190339290|gb|AAI62156.1| Zgc:171531 [Danio rerio]
gi|190339292|gb|AAI62157.1| Zgc:171531 [Danio rerio]
Length = 345
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 73/120 (60%), Gaps = 16/120 (13%)
Query: 43 ALSNLPGLA---QSQPP---TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKS 96
+ L G+A +S PP R+KR R FS AQVYELE+RF QKYLS PER +A
Sbjct: 138 GMGTLTGMADTTKSIPPLHAAPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASM 196
Query: 97 LKLTETQVKIWFQNRRYKTKR-------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR +QLQ EG+L + ++VAV +LV++ P
Sbjct: 197 IHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQ-QEGNL-CQQQQSPRRVAVPVLVKDGKP 254
>gi|350411076|ref|XP_003489231.1| PREDICTED: homeobox protein Nkx-2.1-like [Bombus impatiens]
Length = 427
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R F+ QV+ELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 242 RRKR-RVLFTQQQVHELERRFKQQKYLSAPEREHLAALIHLTPTQVKIWFQNHRYKCKRQ 300
Query: 118 -KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K+ + E + SA + ++VAV +LV++ P
Sbjct: 301 AKEKAMAEQNAQNQSASSPRRVAVPVLVKDGKP 333
>gi|190336953|gb|AAI62660.1| NK2 homeobox 1b [Danio rerio]
gi|190338847|gb|AAI62657.1| NK2 homeobox 1b [Danio rerio]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 13/119 (10%)
Query: 42 AALSNLPGLAQSQPP---TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK 98
+ LS+L + + P T R+KR R FS AQVYELE+RF QKYLS PER +A +
Sbjct: 139 STLSSLADVGKGMGPLTSTPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIH 197
Query: 99 LTETQVKIWFQNRRYKTKR--------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
LT TQVKIWFQN RYK KR +Q+Q GS + ++VAV +LV++ P
Sbjct: 198 LTPTQVKIWFQNHRYKMKRQAKDKVSQQQMQQDNGSCQQQQQ-SPRRVAVPVLVKDGKP 255
>gi|18859487|ref|NP_571851.1| NK2 homeobox 1b [Danio rerio]
gi|12658386|gb|AAK01120.1|AF321112_1 putative transcription factor NK2.1b [Danio rerio]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 13/119 (10%)
Query: 42 AALSNLPGLAQSQPP---TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK 98
+ LS+L + + P T R+KR R FS AQVYELE+RF QKYLS PER +A +
Sbjct: 139 STLSSLADVGKGMGPLTSTPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIH 197
Query: 99 LTETQVKIWFQNRRYKTKR--------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
LT TQVKIWFQN RYK KR +Q+Q GS + ++VAV +LV++ P
Sbjct: 198 LTPTQVKIWFQNHRYKMKRQAKDKVSQQQMQQDNGSCQQQQQ-SPRRVAVPVLVKDGKP 255
>gi|66394667|gb|AAY46193.1| NK2 transcription factor related locus 2 [Ovis aries]
Length = 236
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK K
Sbjct: 117 AGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMK 176
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R + E + + ++VAV +LVR+ P
Sbjct: 177 RAR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 206
>gi|157125974|ref|XP_001654474.1| homeobox protein nk-2 [Aedes aegypti]
gi|108873448|gb|EAT37673.1| AAEL010354-PA [Aedes aegypti]
Length = 565
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 16/135 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS Q +ELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 433 KKRKRRVLFSKHQTFELERRFRQQRYLSAPEREHLASVIRLTPTQVKIWFQNHRYKTKRA 492
Query: 119 QLQLLEGSLNTPSAGNG------KKVAVKILVRESHPY-----GSDYLYGTQGK--LLPP 165
+ +GS++ P A G ++VAV +LVR+ P D L Q LPP
Sbjct: 493 AHE--KGSMD-PGAHQGGGLPSPRRVAVPVLVRDGKPCLGGGKPHDMLAAVQSAHLQLPP 549
Query: 166 APSMANSLYYYPLFY 180
A+ L++ ++
Sbjct: 550 GFQHASLLHHAARWW 564
>gi|340713770|ref|XP_003395409.1| PREDICTED: homeobox protein Nkx-2.1-like [Bombus terrestris]
Length = 421
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R F+ QV+ELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 236 RRKR-RVLFTQQQVHELERRFKQQKYLSAPEREHLAALIHLTPTQVKIWFQNHRYKCKRQ 294
Query: 118 -KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K+ + E + SA + ++VAV +LV++ P
Sbjct: 295 AKEKAMAEQNAQNQSASSPRRVAVPVLVKDGKP 327
>gi|410901373|ref|XP_003964170.1| PREDICTED: homeobox protein Nkx-2.5-like [Takifugu rubripes]
Length = 333
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 90/165 (54%), Gaps = 21/165 (12%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR
Sbjct: 152 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 211
Query: 118 --KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYY 175
K L+L + + ++VAV +LVR+ P L G+Q P N Y
Sbjct: 212 QDKTLELAGHHHHHHAPPPPRRVAVPVLVRDGRP----CLTGSQNFNTPYTVGAPNPYGY 267
Query: 176 YPLFYNMHSLYG-----TQGKL--LPPAPSMANSLYYYPLFYNMH 213
YN +S+Y T L LPP+ + AN+ F NM+
Sbjct: 268 GYQAYNSNSVYSNTYSCTYSSLPTLPPSSTAANA------FMNMN 306
>gi|11602838|gb|AAG38875.1|AF083133_1 cardiac homeobox transcription factor [Mus musculus]
Length = 318
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF Q+YLS ER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSPAERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLE- 202
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 203 -LLGPPPPPARRIAVPVLVRDGKPCLGD 229
>gi|185136095|ref|NP_001118062.1| NK2 homeobox 1a [Oncorhynchus mykiss]
gi|62241060|dbj|BAD93687.1| transcription factor Nkx2.1a [Oncorhynchus mykiss]
Length = 339
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 9/114 (7%)
Query: 44 LSNLPGLAQSQPP---TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
L+ + ++S PP R+KR R FS AQVYELE+RF QKYLS PER +A + LT
Sbjct: 133 LTGMGDASRSMPPLHAAPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLT 191
Query: 101 ETQVKIWFQNRRYKTKRK-----QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
TQVKIWFQN RYK KR+ QL + S + ++VAV +LV++ P
Sbjct: 192 PTQVKIWFQNHRYKMKRQAKDKAAQQLQQESNMCQQQQSPRRVAVPVLVKDGKP 245
>gi|47216822|emb|CAG10144.1| unnamed protein product [Tetraodon nigroviridis]
Length = 121
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGS 126
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR Q + S
Sbjct: 13 FSQAQVYELERRFKQQRYLSAPERDHLAGVLKLTPTQVKIWFQNRRYKCKR---QRQDQS 69
Query: 127 LNTPSAGNGKKVAVKILVRESHP 149
L S ++V+V +LVR+ P
Sbjct: 70 LEMVSLPPPRRVSVPVLVRDGKP 92
>gi|148696574|gb|EDL28521.1| mCG4598, isoform CRA_b [Mus musculus]
Length = 180
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK K
Sbjct: 32 AGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMK 91
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R + E + + ++VAV +LVR+ P
Sbjct: 92 RAR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 121
>gi|431838918|gb|ELK00847.1| Homeobox protein Nkx-2.3 [Pteropus alecto]
Length = 367
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 38 LPKP-AALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
L KP A + + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A
Sbjct: 126 LKKPLEAAGDCKAVEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAS 185
Query: 96 SLKLTETQVKIWFQNRRYKTKRKQ 119
SLKLT TQVKIWFQNRRYK KR++
Sbjct: 186 SLKLTSTQVKIWFQNRRYKCKRQR 209
>gi|16758952|ref|NP_446103.1| homeobox protein Nkx-2.5 [Rattus norvegicus]
gi|6016206|sp|O35767.1|NKX25_RAT RecName: Full=Homeobox protein Nkx-2.5; Short=rNKx-2.5; AltName:
Full=Homeobox protein NK-2 homolog E
gi|2246650|gb|AAB62696.1| tinman homolog [Rattus norvegicus]
Length = 318
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF Q+YLS ER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 144 FSQAQVYELERRFKQQRYLSPAERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLE- 202
Query: 126 SLNTPSAGNGKKVAVKILVRESHPYGSD 153
L P +++AV +LVR+ P D
Sbjct: 203 -LLGPPPPPARRIAVPVLVRDGKPCLGD 229
>gi|405969749|gb|EKC34702.1| Homeobox protein Nkx-2.2a [Crassostrea gigas]
Length = 338
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G + P + +K++ R FS AQ YELE+RF Q+YLS PER +A ++LT QVKIWF
Sbjct: 135 GNSSQNPDSQKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLTPVQVKIWF 194
Query: 109 QNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
QN RYK KR + E L+ + ++VAV +LVR+ P
Sbjct: 195 QNHRYKLKRAR---QEKGLDLNPLPSPRRVAVPVLVRDGKP 232
>gi|328788345|ref|XP_394578.3| PREDICTED: homeobox protein Nkx-2.4-like [Apis mellifera]
Length = 305
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R F+ QV+ELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 122 RRKR-RVLFTQQQVHELERRFKQQKYLSAPEREHLAALIHLTPTQVKIWFQNHRYKCKRQ 180
Query: 118 -KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K+ + E + SA + ++VAV +LV++ P
Sbjct: 181 AKEKAMAEQNAQNQSASSPRRVAVPVLVKDGKP 213
>gi|195131475|ref|XP_002010176.1| GI14840 [Drosophila mojavensis]
gi|193908626|gb|EDW07493.1| GI14840 [Drosophila mojavensis]
Length = 762
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 11/106 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 595 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 654
Query: 119 QLQ-------LLEGSL---NTPSA-GNGKKVAVKILVRESHPYGSD 153
Q + ++ G+ + PSA + ++VAV +LVR P D
Sbjct: 655 QNEKGYEHTGMIHGNAIHPHHPSALPSPRRVAVPVLVRNGKPCLGD 700
>gi|432903714|ref|XP_004077194.1| PREDICTED: homeobox protein Nkx-2.5-like [Oryzias latipes]
Length = 341
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP T RK R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRY
Sbjct: 153 QPRTRRKPR--VLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRY 210
Query: 114 KTKRKQ 119
K KR++
Sbjct: 211 KCKRQR 216
>gi|348518375|ref|XP_003446707.1| PREDICTED: homeobox protein Nkx-2.2a-like [Oreochromis niloticus]
Length = 242
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
A++Q GRK+R FS AQ +ELE+RF Q+YLS PER +A+ ++LT QVKIWFQ
Sbjct: 97 CARAQKARGRKRR--VLFSKAQTFELERRFRQQRYLSAPEREHLARLIRLTPNQVKIWFQ 154
Query: 110 NRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYG 151
N RYK KR + E S++ ++VA+ +LVR+ P G
Sbjct: 155 NHRYKMKRAR---AERSMDALQLLPARRVAIPVLVRDGKPCG 193
>gi|410918371|ref|XP_003972659.1| PREDICTED: homeobox protein HMX3-like [Takifugu rubripes]
Length = 291
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 22/179 (12%)
Query: 7 SEEYYKKINNNNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAA 66
S++ +K +N++T++ D R +D P S GRKK++R
Sbjct: 124 SDDIDRKTCDNHLTDDGEDAPSASDSRSEQDAP-------------SDLSPGRKKKTRTV 170
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGS 126
FS +QV++LE F+ ++YLS ERA +A +L LTETQVKIWFQNRR K KR+ LE S
Sbjct: 171 FSRSQVFQLESTFDVKRYLSSSERAGLAATLHLTETQVKIWFQNRRNKWKRQLAADLEAS 230
Query: 127 LNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYPLFYNMHSL 185
P + + V V IL H G+ + G P +P + + YPL HS+
Sbjct: 231 A-VPQSSQ-RIVRVPILY---HDGGASLGFSLSGH--PVSPPVGG--FSYPLSPFAHSM 280
>gi|11493716|gb|AAG35619.1|AF202039_1 homeobox transcription factor [Mus musculus]
Length = 286
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 74/127 (58%), Gaps = 14/127 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 120 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 178
Query: 118 ------KQLQLLEGSLN---TPSAGNGKKVAVKILVRESHPY--GSDYLYGTQGKLLPPA 166
+QLQ EG L P + ++VAV +LV++ P G+ QG P A
Sbjct: 179 AKDKAAQQLQ-QEGGLGPPPPPPPPSPRRVAVPVLVKDGKPCQNGAGTPTPGQGGQQPQA 237
Query: 167 PSMANSL 173
P+ A L
Sbjct: 238 PTPAPEL 244
>gi|359068353|ref|XP_003586459.1| PREDICTED: homeobox protein Nkx-2.6-like [Bos taurus]
Length = 358
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 61/99 (61%), Gaps = 11/99 (11%)
Query: 56 PTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P R +R R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRYK
Sbjct: 128 PIARPRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYK 187
Query: 115 TKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR K L+L L ++VAV +LVR+ P
Sbjct: 188 CKRQRQDKSLELAGHPLAP------RRVAVPVLVRDGKP 220
>gi|322366530|gb|ADW95339.1| NK2.2 [Paracentrotus lividus]
Length = 434
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP RK+R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK
Sbjct: 236 PPKKRKRR--VLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQNHRYK 293
Query: 115 TKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR + E L+ + ++VAV +LVR+ P
Sbjct: 294 LKRAR---QEKGLDLNPLPSPRRVAVPVLVRDGKP 325
>gi|410897961|ref|XP_003962467.1| PREDICTED: homeobox protein Nkx-2.4-like isoform 2 [Takifugu
rubripes]
Length = 346
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 64/103 (62%), Gaps = 13/103 (12%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 151 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 209
Query: 119 ------------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q Q +G+L A + ++VAV +LV++ P
Sbjct: 210 AKDKAAQQLQQQQQQQQDGNLCQQQAQSPRRVAVPVLVKDGKP 252
>gi|1170292|sp|P43697.1|NKX22_MESAU RecName: Full=Homeobox protein Nkx-2.2; AltName: Full=Homeobox
protein NK-2 homolog B
gi|587465|emb|CAA57165.1| NKx2.2 [Mesocricetus auratus]
Length = 273
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 126 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + + VAV +LVR+ P
Sbjct: 186 AR---AEKGMEVTPLPSPRCVAVPVLVRDGKP 214
>gi|190336865|gb|AAI62307.1| NK2 homeobox 1a [Danio rerio]
Length = 307
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 147 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 205
Query: 119 ---QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ + S N + + ++VAV +LV++ P
Sbjct: 206 AKDKASQQQDSGNMCAQQSPRRVAVPVLVKDGKP 239
>gi|307201138|gb|EFN81049.1| BarH-like 2 homeobox protein [Harpegnathos saltator]
Length = 199
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 49 GLAQSQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIW 107
G++ S PPTGRK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W
Sbjct: 49 GVSSSAPPTGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALSLSETQVKTW 108
Query: 108 FQNRRYKTKRK-QLQL 122
+QNRR K KR+ QL+L
Sbjct: 109 YQNRRTKWKRQNQLRL 124
>gi|45382925|ref|NP_989947.1| thyroid transcription factor 1 [Gallus gallus]
gi|4127848|emb|CAA11493.1| Homeodomain protein NKx2.1 [Gallus gallus]
Length = 344
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 63/100 (63%), Gaps = 10/100 (10%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 157 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 215
Query: 117 RK-------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ ++Q GS + ++VAV +LV++ P
Sbjct: 216 RQAKDKAAHEMQQENGSCQQQQS--PRRVAVPVLVKDGKP 253
>gi|410897959|ref|XP_003962466.1| PREDICTED: homeobox protein Nkx-2.4-like isoform 1 [Takifugu
rubripes]
Length = 355
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 64/103 (62%), Gaps = 13/103 (12%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 160 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 218
Query: 119 ------------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q Q +G+L A + ++VAV +LV++ P
Sbjct: 219 AKDKAAQQLQQQQQQQQDGNLCQQQAQSPRRVAVPVLVKDGKP 261
>gi|312376161|gb|EFR23333.1| hypothetical protein AND_13070 [Anopheles darlingi]
Length = 1039
Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 81/156 (51%), Gaps = 21/156 (13%)
Query: 14 INNNNITNNTMSYYGKKDIRDARDLPKPAALSN----LPGLAQSQP--PTG----RKKRS 63
++ NN T+ D RDA P + SN G+ PTG +K++
Sbjct: 311 VDTNNNTHRRSCDTEPPDDRDAASSPSISGRSNDNRGQQGIGNDSAGGPTGTGGHKKRKR 370
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLL 123
R FS Q +ELE+RF +YLS PER +A + LT TQVKIWFQN RYKTKR Q +
Sbjct: 371 RILFSKTQTFELERRFKQARYLSAPEREHLASVINLTPTQVKIWFQNHRYKTKRAQTEKN 430
Query: 124 --------EGSLNTPSAGNG--KKVAVKILVRESHP 149
+GSL P+AG KK+ V +LVR+ P
Sbjct: 431 TTVMGYHGQGSL-IPAAGASPPKKINVPVLVRDGKP 465
>gi|449267691|gb|EMC78604.1| Homeobox protein Nkx-2.6, partial [Columba livia]
Length = 90
Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 61/93 (65%), Gaps = 10/93 (10%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR--- 117
++ R FS AQV+ELE+RF QKYLS PER +A +LKLT TQVKIWFQNRRYK KR
Sbjct: 1 RKPRVLFSQAQVFELERRFKQQKYLSAPEREHLANALKLTSTQVKIWFQNRRYKCKRQRQ 60
Query: 118 -KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K L+L L ++VAV +LVR+ P
Sbjct: 61 DKSLELAAHPLPP------RRVAVPVLVRDGKP 87
>gi|12862358|dbj|BAB32434.1| thyroid transcription factor-1 [Lethenteron camtschaticum]
Length = 412
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 62/100 (62%), Gaps = 8/100 (8%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 205 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 263
Query: 117 R-------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R +QLQ + + ++VAV +LV++ P
Sbjct: 264 RQAKDKVSQQLQQDGAGGGSGQQQSPRRVAVPVLVKDGKP 303
>gi|443696360|gb|ELT97078.1| hypothetical protein CAPTEDRAFT_170007 [Capitella teleta]
Length = 270
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 62/91 (68%), Gaps = 4/91 (4%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK- 118
K++ R FS AQVYELE+RF Q+YLS PER +A LK++ QVKIWFQNRRYK KR+
Sbjct: 115 KRKPRVLFSQAQVYELERRFKQQRYLSAPEREQLAAMLKMSSQQVKIWFQNRRYKMKRQT 174
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q + LE + S ++VAV +LVR+ P
Sbjct: 175 QDKTLELAALQQSP---RRVAVPVLVRDGKP 202
>gi|395543115|ref|XP_003775399.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX1-like
[Sarcophilus harrisii]
Length = 371
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
GRKK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K K
Sbjct: 217 AGRKKKTRTVFSRSQVFQLESTFDVKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWK 276
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ LE + +PSA + V V IL E+ P
Sbjct: 277 RQLAADLEAASLSPSA--QRLVRVPILYHENSP 307
>gi|190337906|gb|AAI62296.1| NK2 homeobox 1a [Danio rerio]
Length = 307
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 147 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRE 205
Query: 119 ---QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ + S N + + ++VAV +LV++ P
Sbjct: 206 AKDKASQQQDSGNMCAQQSPRRVAVPVLVKDGKP 239
>gi|15706310|dbj|BAB68343.1| Cs-TTF1 [Ciona savignyi]
Length = 473
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 63/109 (57%), Gaps = 13/109 (11%)
Query: 21 NNTMS-YYGKKDIRDARDLPKPAAL-----SNLPGLAQSQ------PPTGRKKRSRAAFS 68
NN S +YG D R +P L S +PG PP+ R+KR R FS
Sbjct: 150 NNVQSHWYGAPSNPDPRFVPSYPRLQIGYGSMMPGTGMDGMHKSLLPPSQRRKR-RVLFS 208
Query: 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
AQV+ELE+RF QKYLS PER +A+ + LT TQVKIWFQN RYK KR
Sbjct: 209 QAQVFELERRFKQQKYLSAPEREHLAQMIHLTPTQVKIWFQNHRYKNKR 257
>gi|324521653|gb|ADY47900.1| Homeobox protein ceh-22 [Ascaris suum]
Length = 243
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 73/134 (54%), Gaps = 24/134 (17%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQ----- 121
F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTK K LQ
Sbjct: 106 FTKAQTYELERRFRTQRYLSAPEREQLAMQIRLTPTQVKIWFQNHRYKTK-KTLQDKGLN 164
Query: 122 --LLEGSLNTPSA--GNGKKVAVKILVRESHPYGSDYL------YGTQGKLLPPA---PS 168
LL ++ T S G+++ V++LVR+ P D+ G G PP P
Sbjct: 165 TSLLNSTVPTSSVTFAPGRRIPVQMLVRDGKPCPQDFAGAYQTPTGLSGSFPPPGGYLPQ 224
Query: 169 MA-----NSLYYYP 177
A NS YY P
Sbjct: 225 AATGLPQNSQYYMP 238
>gi|126332119|ref|XP_001372961.1| PREDICTED: homeobox protein HMX1-like [Monodelphis domestica]
Length = 371
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
GRKK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K K
Sbjct: 226 AGRKKKTRTVFSRSQVFQLESTFDVKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWK 285
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ LE + +PSA + V V IL E+ P
Sbjct: 286 RQLAADLEAASLSPSA--QRLVRVPILYHENSP 316
>gi|355779575|gb|EHH64051.1| Homeobox protein NK-2-like protein F [Macaca fascicularis]
Length = 301
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 64/105 (60%), Gaps = 10/105 (9%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G QP ++++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWF
Sbjct: 121 GGCSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWF 180
Query: 109 QNRRYKTKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
QNRRYK KR K L+ L G TP ++VA LVR+ P
Sbjct: 181 QNRRYKCKRQRQDKSLE-LAGHPLTP-----RRVAXXXLVRDGKP 219
>gi|47220252|emb|CAG03286.1| unnamed protein product [Tetraodon nigroviridis]
Length = 255
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 71/120 (59%), Gaps = 13/120 (10%)
Query: 7 SEEYYKKINNNNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAA 66
S+E +K +N++T++ + D R D PA LS GRKK++R
Sbjct: 147 SDEVDRKAGDNHLTDDGEDAHNGSDARSEPD--APADLS-----------PGRKKKTRTV 193
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGS 126
FS +QV++LE F+ ++YLS ERA +A +L LTETQVKIWFQNRR K KR+ LE S
Sbjct: 194 FSRSQVFQLESTFDVKRYLSSSERAGLAATLHLTETQVKIWFQNRRNKWKRQLAADLEAS 253
>gi|334312722|ref|XP_003339772.1| PREDICTED: homeobox protein Nkx-2.4-like [Monodelphis domestica]
Length = 513
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 351 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 409
Query: 118 ---KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K Q L+ + + ++VAV +LV++ P
Sbjct: 410 AKDKVTQQLQQENSLCQQQSPRRVAVPVLVKDGKP 444
>gi|383854348|ref|XP_003702683.1| PREDICTED: homeobox protein Nkx-2.4-like [Megachile rotundata]
Length = 303
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R F+ QV+ELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 120 RRKR-RVLFTQQQVHELERRFKQQKYLSAPEREHLAGLINLTPTQVKIWFQNHRYKCKRQ 178
Query: 118 -KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K+ + E + SA + ++VAV +LV++ P
Sbjct: 179 AKEKAMAEQNAQNQSASSPRRVAVPVLVKDGKP 211
>gi|164523612|gb|ABY60841.1| Nkx5-3 [Danio rerio]
Length = 282
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 92/171 (53%), Gaps = 13/171 (7%)
Query: 17 NNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELE 76
+ + + MS + DAR L G S+P + RKK++R FS +QV++LE
Sbjct: 112 DGVVDRKMSGCAVDEGDDARQL-----FDERSGPDTSEPGSARKKKTRTVFSRSQVFQLE 166
Query: 77 KRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEG-SLNTPSAGNG 135
F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+ LE + N S
Sbjct: 167 STFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLEAVNFNHNSQ--- 223
Query: 136 KKVAVKILVRE-SHPYGSDYLYGTQGKLLPPAPSMANSLYYYPLFYNMHSL 185
+ V V IL + + P + G+Q + PP +NS+ YPL HS+
Sbjct: 224 RIVRVPILYHDKATPMSTLSFNGSQ--VSPPLMGFSNSV-NYPLSSFAHSV 271
>gi|432937492|ref|XP_004082426.1| PREDICTED: homeobox protein Nkx-2.2a-like [Oryzias latipes]
Length = 273
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 128 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRA 187
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 188 R---AEKGMEVTHLPSPRRVAVPVLVRDGKP 215
>gi|26346541|dbj|BAB24155.2| unnamed protein product [Mus musculus]
Length = 200
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 74/127 (58%), Gaps = 14/127 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 34 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 92
Query: 118 ------KQLQLLEGSLN---TPSAGNGKKVAVKILVRESHPY--GSDYLYGTQGKLLPPA 166
+QLQ EG L P + ++VAV +LV++ P G+ QG P A
Sbjct: 93 AKDKAAQQLQ-QEGGLGPPPPPPPPSPRRVAVPVLVKDGKPCQNGAGTPTPGQGGQQPQA 151
Query: 167 PSMANSL 173
P+ A L
Sbjct: 152 PTPAPEL 158
>gi|426222233|ref|XP_004005303.1| PREDICTED: homeobox protein Nkx-2.6 [Ovis aries]
Length = 265
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 10/94 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
+++ R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRYK KR
Sbjct: 98 RRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQR 157
Query: 118 --KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
K L+L L ++VAV +LVR+ P
Sbjct: 158 QDKSLELAGHPLAP------RRVAVPVLVRDGKP 185
>gi|395828302|ref|XP_003787323.1| PREDICTED: homeobox protein Nkx-2.3 [Otolemur garnettii]
Length = 363
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 37 DLPKP-AALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVA 94
L KP A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A
Sbjct: 123 QLKKPLEAAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLA 182
Query: 95 KSLKLTETQVKIWFQNRRYKTKRKQ 119
SLKLT TQVKIWFQNRRYK KR++
Sbjct: 183 SSLKLTSTQVKIWFQNRRYKCKRQR 207
>gi|395501772|ref|XP_003755264.1| PREDICTED: homeobox protein Nkx-2.3 [Sarcophilus harrisii]
Length = 326
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 136 ESERPKQRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 195
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 196 RRYKCKRQR 204
>gi|348517399|ref|XP_003446221.1| PREDICTED: homeobox protein Nkx-2.2a-like [Oreochromis niloticus]
Length = 273
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 128 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRA 187
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 188 R---AEKGMEVTHLPSPRRVAVPVLVRDGKP 215
>gi|70571406|dbj|BAE06740.1| transcription factor protein [Ciona intestinalis]
Length = 477
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 63/110 (57%), Gaps = 14/110 (12%)
Query: 21 NNTMS-YYGKKDIRDARDLPKPAAL------SNLPGLAQSQ------PPTGRKKRSRAAF 67
NN S +YG D R +P L S +PG PP+ R+KR R F
Sbjct: 150 NNVQSPWYGAPSNPDPRFVPSYPRLQITGYGSMMPGTGMDGMHKTLLPPSQRRKR-RVLF 208
Query: 68 SHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
S AQV+ELE+RF QKYLS PER +A+ + LT TQVKIWFQN RYK KR
Sbjct: 209 SQAQVFELERRFKQQKYLSAPEREHLAQMIHLTPTQVKIWFQNHRYKNKR 258
>gi|358413579|ref|XP_003582602.1| PREDICTED: homeobox protein Nkx-2.6-like [Bos taurus]
Length = 300
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 61/99 (61%), Gaps = 11/99 (11%)
Query: 56 PTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P R +R R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRYK
Sbjct: 128 PIARPRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYK 187
Query: 115 TKR----KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR K L+L L ++VAV +LVR+ P
Sbjct: 188 CKRQRQDKSLELAGHPLAP------RRVAVPVLVRDGKP 220
>gi|301775467|ref|XP_002923153.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.2-like
[Ailuropoda melanoleuca]
Length = 270
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR +
Sbjct: 126 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRAR- 184
Query: 121 QLLEGSLNTPSAGNGKKVAVKILVRESHP 149
E + + ++VAV +LVR+ P
Sbjct: 185 --AEKGMEVTPLPSPRRVAVPVLVRDGKP 211
>gi|432875176|ref|XP_004072712.1| PREDICTED: homeobox protein Nkx-2.6-like [Oryzias latipes]
Length = 230
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G ++ R FS +QV ELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK K
Sbjct: 94 AGLHRKPRVLFSQSQVSELERRFRQQRYLSAPEREHLAHVLKLTSTQVKIWFQNRRYKCK 153
Query: 117 R-KQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
R +Q + LE + PSA ++VAV +LVR+
Sbjct: 154 RQRQDKSLELA-GYPSA--PRRVAVPVLVRD 181
>gi|74096093|ref|NP_001027667.1| homeobox transcription factor TTF1 [Ciona intestinalis]
gi|4218156|emb|CAA08756.1| TTF-1 [Ciona intestinalis]
Length = 477
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 63/110 (57%), Gaps = 14/110 (12%)
Query: 21 NNTMS-YYGKKDIRDARDLPKPAAL------SNLPGLAQSQ------PPTGRKKRSRAAF 67
NN S +YG D R +P L S +PG PP+ R+KR R F
Sbjct: 150 NNVQSPWYGAPSNPDPRFVPSYPRLQITGYGSMMPGTGMDGMHKTLLPPSQRRKR-RVLF 208
Query: 68 SHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
S AQV+ELE+RF QKYLS PER +A+ + LT TQVKIWFQN RYK KR
Sbjct: 209 SQAQVFELERRFKQQKYLSAPEREHLAQMIHLTPTQVKIWFQNHRYKNKR 258
>gi|402883357|ref|XP_003905186.1| PREDICTED: homeobox protein Nkx-2.4 [Papio anubis]
Length = 356
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 11/100 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 191 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 249
Query: 118 ------KQLQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
+QLQ EG L P + ++VAV +LV++ P
Sbjct: 250 AKDKAAQQLQ-QEGGLGPPPPPPPSPRRVAVPVLVKDGKP 288
>gi|348521184|ref|XP_003448106.1| PREDICTED: homeobox protein HMX3-like [Oreochromis niloticus]
Length = 299
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 15/142 (10%)
Query: 5 KDSEEYYKKINNNNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSR 64
+DS+E +K ++N+T + D R +D A S RKK++R
Sbjct: 125 EDSDEPDRKTGDSNLTEDVEDAQNVSDARTEQDASSDATFS-------------RKKKTR 171
Query: 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLE 124
FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+ LE
Sbjct: 172 TVFSRSQVFQLESTFDVKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLE 231
Query: 125 GSLNTPSAGNGKKVAVKILVRE 146
+ P++ + V V IL E
Sbjct: 232 AA-QIPNSAQ-RIVRVPILYHE 251
>gi|355562692|gb|EHH19286.1| hypothetical protein EGK_19965, partial [Macaca mulatta]
Length = 216
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 43 ALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTE 101
A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT
Sbjct: 130 AAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTS 189
Query: 102 TQVKIWFQNRRYKTKRKQ 119
TQVKIWFQNRRYK KR++
Sbjct: 190 TQVKIWFQNRRYKCKRQR 207
>gi|148746211|ref|NP_660328.2| homeobox protein Nkx-2.3 [Homo sapiens]
gi|27923815|sp|Q8TAU0.2|NKX23_HUMAN RecName: Full=Homeobox protein Nkx-2.3; AltName: Full=Homeobox
protein NK-2 homolog C
gi|194374783|dbj|BAG62506.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|170594147|ref|XP_001901825.1| Homeobox domain containing protein [Brugia malayi]
gi|158590769|gb|EDP29384.1| Homeobox domain containing protein [Brugia malayi]
Length = 351
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 20/131 (15%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK-QLQLLEG 125
F+ Q +ELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTK+ Q + + G
Sbjct: 216 FTKLQTFELERRFRTQRYLSAPEREQLAMQIRLTPTQVKIWFQNHRYKTKKTYQDKRVTG 275
Query: 126 SLNTP----SAGNGKKVAVKILVRESHPYGSDYLYGT-------------QGKLLPPAPS 168
+L+ P + K++ V++LV + P +D++ GT G P S
Sbjct: 276 NLSQPMPSINFSQSKRIPVQMLVHDGKPCPTDFVTGTYPASNTLPDPFTPNGSYFTPTTS 335
Query: 169 M--ANSLYYYP 177
+ +NS YY P
Sbjct: 336 ILPSNSHYYMP 346
>gi|296220973|ref|XP_002807516.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.3
[Callithrix jacchus]
Length = 254
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 38 LPKP-AALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
L KP A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A
Sbjct: 124 LKKPLEAAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAS 183
Query: 96 SLKLTETQVKIWFQNRRYKTKRKQ 119
SLKLT TQVKIWFQNRRYK KR++
Sbjct: 184 SLKLTSTQVKIWFQNRRYKCKRQR 207
>gi|355783011|gb|EHH64932.1| hypothetical protein EGM_18264 [Macaca fascicularis]
Length = 220
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 43 ALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTE 101
A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT
Sbjct: 130 AAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTS 189
Query: 102 TQVKIWFQNRRYKTKRKQLQLLEGSLN 128
TQVKIWFQNRRYK KR Q +G+L
Sbjct: 190 TQVKIWFQNRRYKCKR-QRACAQGTLQ 215
>gi|322790110|gb|EFZ15143.1| hypothetical protein SINV_13435 [Solenopsis invicta]
Length = 203
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 58/75 (77%), Gaps = 2/75 (2%)
Query: 50 LAQSQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
+A S PPTGRK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W+
Sbjct: 51 IANSAPPTGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALSLSETQVKTWY 110
Query: 109 QNRRYKTKRK-QLQL 122
QNRR K KR+ QL+L
Sbjct: 111 QNRRTKWKRQNQLRL 125
>gi|426365848|ref|XP_004049978.1| PREDICTED: homeobox protein Nkx-2.3 [Gorilla gorilla gorilla]
Length = 361
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|332834834|ref|XP_001166828.2| PREDICTED: homeobox protein Nkx-2.3 [Pan troglodytes]
Length = 363
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|259013394|ref|NP_001158404.1| NK2 homeobox 2 [Saccoglossus kowalevskii]
gi|90660013|gb|ABD97281.1| NK2-2 transcription factor [Saccoglossus kowalevskii]
Length = 386
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ YELE+RF Q+YLS PER +A ++L+ TQVKIWFQN RYK KR
Sbjct: 202 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLSPTQVKIWFQNHRYKLKRA 261
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E L+ + ++VAV +LVR+ P
Sbjct: 262 R---QEKGLDMNPLPSPRRVAVPVLVRDGKP 289
>gi|157426823|ref|NP_149416.1| homeobox protein Nkx-2.4 [Homo sapiens]
gi|206729913|sp|Q9H2Z4.3|NKX24_HUMAN RecName: Full=Homeobox protein Nkx-2.4; AltName: Full=Homeobox
protein NK-2 homolog D
gi|119630590|gb|EAX10185.1| hCG22196 [Homo sapiens]
Length = 354
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 11/100 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 189 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 247
Query: 118 ------KQLQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
+QLQ EG L P + ++VAV +LV++ P
Sbjct: 248 AKDKAAQQLQ-QEGGLGPPPPPPPSPRRVAVPVLVKDGKP 286
>gi|332858062|ref|XP_525278.3| PREDICTED: homeobox protein Nkx-2.4 [Pan troglodytes]
Length = 354
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 11/100 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 189 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 247
Query: 118 ------KQLQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
+QLQ EG L P + ++VAV +LV++ P
Sbjct: 248 AKDKAAQQLQ-QEGGLGPPPPPPPSPRRVAVPVLVKDGKP 286
>gi|119570252|gb|EAW49867.1| NK2 transcription factor related, locus 3 (Drosophila) [Homo
sapiens]
Length = 267
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|7271846|gb|AAF44651.1| homeobox protein NKX2-3 [Homo sapiens]
Length = 211
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|402881180|ref|XP_003904155.1| PREDICTED: homeobox protein Nkx-2.3 [Papio anubis]
Length = 365
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|334314128|ref|XP_003339993.1| PREDICTED: homeobox protein Nkx-2.3-like [Monodelphis domestica]
Length = 348
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 53/82 (64%)
Query: 38 LPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL 97
L KP +P +++ R FS AQV+ELE+RF Q+YLS PER +A SL
Sbjct: 124 LKKPLEAGECKAEESERPKQRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSL 183
Query: 98 KLTETQVKIWFQNRRYKTKRKQ 119
KLT TQVKIWFQNRRYK KR++
Sbjct: 184 KLTSTQVKIWFQNRRYKCKRQR 205
>gi|109093094|ref|XP_001093634.1| PREDICTED: homeobox protein Nkx-2.4-like [Macaca mulatta]
Length = 451
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 11/100 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 286 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 344
Query: 118 ------KQLQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
+QLQ EG L P + ++VAV +LV++ P
Sbjct: 345 AKDKAAQQLQ-QEGGLGPPPPPPPSPRRVAVPVLVKDGKP 383
>gi|19343621|gb|AAH25788.1| NK2 transcription factor related, locus 3 (Drosophila) [Homo
sapiens]
Length = 293
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|297301639|ref|XP_001106216.2| PREDICTED: homeobox protein Nkx-2.3-like [Macaca mulatta]
Length = 364
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|77736297|ref|NP_001029848.1| homeobox protein Nkx-2.3 [Bos taurus]
gi|73587281|gb|AAI02824.1| NK2 transcription factor related, locus 3 (Drosophila) [Bos taurus]
gi|296472708|tpg|DAA14823.1| TPA: NK2 transcription factor related, locus 3 [Bos taurus]
Length = 367
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 37 DLPKP-AALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVA 94
L KP A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A
Sbjct: 124 QLKKPLEAAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLA 183
Query: 95 KSLKLTETQVKIWFQNRRYKTKRKQ 119
SLKLT TQVKIWFQNRRYK KR++
Sbjct: 184 SSLKLTSTQVKIWFQNRRYKCKRQR 208
>gi|332212536|ref|XP_003255374.1| PREDICTED: homeobox protein Nkx-2.3 [Nomascus leucogenys]
Length = 363
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|410975884|ref|XP_003994357.1| PREDICTED: homeobox protein Nkx-2.3 [Felis catus]
Length = 311
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 140 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 199
Query: 111 RRYKTKRKQLQLLEGSLNTPSAGNGKKVA 139
RRYK KR Q + SL + G G ++A
Sbjct: 200 RRYKCKR---QRQDKSLELGAHGPGAQLA 225
>gi|397510707|ref|XP_003825733.1| PREDICTED: homeobox protein Nkx-2.3 [Pan paniscus]
Length = 303
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|297687188|ref|XP_002821103.1| PREDICTED: homeobox protein Nkx-2.3 [Pongo abelii]
Length = 363
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 139 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 198
Query: 111 RRYKTKRKQ 119
RRYK KR++
Sbjct: 199 RRYKCKRQR 207
>gi|3650214|dbj|BAA33413.1| thyroid transcription factor-1 [Halocynthia roretzi]
Length = 557
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 52/71 (73%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
+ G+ + P+ ++++ R FS AQV+ELE+RF QKYLS PER +A+ ++LT TQVKI
Sbjct: 263 MDGMHKPMLPSSQRRKRRVLFSQAQVFELERRFKQQKYLSAPEREHLAQMIRLTPTQVKI 322
Query: 107 WFQNRRYKTKR 117
WFQN RYK KR
Sbjct: 323 WFQNHRYKNKR 333
>gi|224047541|ref|XP_002197288.1| PREDICTED: homeobox protein Nkx-2.2a-like [Taeniopygia guttata]
Length = 232
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P R+KR R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK
Sbjct: 83 PFSREKR-RVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKM 141
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR + E + + ++VAV +LVR+ P
Sbjct: 142 KRAR---AEKGMEVTPLPSPRRVAVPVLVRDGKP 172
>gi|335302086|ref|XP_003359369.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.3-like [Sus
scrofa]
Length = 367
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 43 ALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTE 101
A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT
Sbjct: 131 AAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTS 190
Query: 102 TQVKIWFQNRRYKTKRKQ 119
TQVKIWFQNRRYK KR++
Sbjct: 191 TQVKIWFQNRRYKCKRQR 208
>gi|193788675|ref|NP_001123283.1| NK2 homeodomain protein [Strongylocentrotus purpuratus]
gi|167859064|gb|ACA04467.1| Nk2.2 [Strongylocentrotus purpuratus]
Length = 437
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP RK+R FS AQ YELE+RF Q+YLS PER +A ++L+ TQVKIWFQN RYK
Sbjct: 239 PPKKRKRR--VLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLSPTQVKIWFQNHRYK 296
Query: 115 TKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR + E L+ + ++VAV +LVR+ P
Sbjct: 297 LKRAR---QEKGLDLNPLPSPRRVAVPVLVRDGKP 328
>gi|440909062|gb|ELR59014.1| Homeobox protein Nkx-2.3, partial [Bos grunniens mutus]
Length = 226
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 38 LPKP-AALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
L KP A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A
Sbjct: 125 LKKPLEAAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAS 184
Query: 96 SLKLTETQVKIWFQNRRYKTKRKQ 119
SLKLT TQVKIWFQNRRYK KR++
Sbjct: 185 SLKLTSTQVKIWFQNRRYKCKRQR 208
>gi|348543451|ref|XP_003459197.1| PREDICTED: homeobox protein HMX3-like [Oreochromis niloticus]
Length = 326
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 191 RKKKTRTVFSRSQVFQLESTFDLKRYLSSSERAGLAASLQLTETQVKIWFQNRRNKWKRQ 250
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYY 175
+E S T + V V +L RES + + PP +NS+ Y
Sbjct: 251 ITADIEASSATAPYAAQRVVRVPVLYRES--VTTPLTLTNLPHVSPPVVGFSNSVNY 305
>gi|18859485|ref|NP_571664.1| NK2 homeobox 1a [Danio rerio]
gi|8745420|gb|AAF78912.1|AF253054_1 homeobox protein [Danio rerio]
Length = 307
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 147 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 205
Query: 119 ---QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ + S N + + ++VA+ +LV++ P
Sbjct: 206 AKDKASQQQDSGNMCAQQSPRRVALPVLVKDGKP 239
>gi|91091012|ref|XP_975046.1| PREDICTED: similar to AGAP003670-PA [Tribolium castaneum]
gi|270013176|gb|EFA09624.1| hypothetical protein TcasGA2_TC011745 [Tribolium castaneum]
Length = 163
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
K++ R FS AQVYELE+RF QKYLS PER +A+ LKLT TQVKIWFQNRRYK+KR+
Sbjct: 58 KRKPRVLFSQAQVYELERRFKQQKYLSAPEREQMAQGLKLTPTQVKIWFQNRRYKSKRQT 117
Query: 120 L 120
+
Sbjct: 118 V 118
>gi|47219535|emb|CAG09889.1| unnamed protein product [Tetraodon nigroviridis]
Length = 355
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 128 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRA 187
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ + + PS ++VAV +LVR+ P
Sbjct: 188 RAEKGMEVTHLPSP---RRVAVPVLVRDGKP 215
>gi|359323225|ref|XP_003640037.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.3 [Canis
lupus familiaris]
Length = 364
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 37 DLPKP-AALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVA 94
L KP A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A
Sbjct: 123 QLKKPLEAAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLA 182
Query: 95 KSLKLTETQVKIWFQNRRYKTKRKQ 119
SLKLT TQVKIWFQNRRYK KR++
Sbjct: 183 SSLKLTSTQVKIWFQNRRYKCKRQR 207
>gi|383847871|ref|XP_003699576.1| PREDICTED: uncharacterized protein LOC100882499 [Megachile
rotundata]
Length = 301
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ +ELE+RF Q+YLS ER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 185 KKRKRRVLFSKAQTFELERRFRQQRYLSAQEREHLASIIRLTPTQVKIWFQNHRYKTKRA 244
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYL----YGTQGKLLPPAPSMANSLY 174
+ +E S + ++VAV +L+++ P S + Y G++ P P Y
Sbjct: 245 ATERVEAGG---SGCSPRRVAVPLLIKDGKPCQSKLMEPTSYPAAGQV--PMPPYMQKPY 299
Query: 175 YY 176
++
Sbjct: 300 WW 301
>gi|45356810|gb|AAS58444.1| NK2.2 [Strongylocentrotus purpuratus]
Length = 394
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP RK+R FS AQ YELE+RF Q+YLS PER +A ++L+ TQVKIWFQN RYK
Sbjct: 239 PPKKRKRR--VLFSKAQTYELERRFRQQRYLSAPEREHLASIIRLSPTQVKIWFQNHRYK 296
Query: 115 TKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
KR + E L+ + ++VAV +LVR+ P
Sbjct: 297 LKRAR---QEKGLDLNPLPSPRRVAVPVLVRDGKP 328
>gi|301615562|ref|XP_002937234.1| PREDICTED: homeobox protein Nkx-2.3-like [Xenopus (Silurana)
tropicalis]
Length = 328
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR++
Sbjct: 146 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLANSLKLTSTQVKIWFQNRRYKCKRQR 205
>gi|159155041|gb|AAI54567.1| Hmx1 protein [Danio rerio]
Length = 164
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 8/135 (5%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S+P + RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR
Sbjct: 25 SEPGSARKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRR 84
Query: 113 YKTKRKQLQLLEG-SLNTPSAGNGKKVAVKILVRE-SHPYGSDYLYGTQGKLLPPAPSMA 170
K KR+ LE + N S + V V IL + + P + G+Q + PP +
Sbjct: 85 NKWKRQLAADLEAVNFNHNSQ---RIVRVPILYHDKATPMSTLSFNGSQ--VSPPLMGFS 139
Query: 171 NSLYYYPLFYNMHSL 185
NS+ YPL HS+
Sbjct: 140 NSV-NYPLSSFAHSV 153
>gi|426253347|ref|XP_004020358.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.3 [Ovis
aries]
Length = 252
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 38 LPKP-AALSNLPGLAQSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAK 95
L KP A + +S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A
Sbjct: 119 LKKPLEAAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAS 178
Query: 96 SLKLTETQVKIWFQNRRYKTKRKQ 119
SLKLT TQVKIWFQNRRYK KR++
Sbjct: 179 SLKLTSTQVKIWFQNRRYKCKRQR 202
>gi|46849702|ref|NP_032725.1| homeobox protein Nkx-2.3 [Mus musculus]
gi|22096366|sp|P97334.2|NKX23_MOUSE RecName: Full=Homeobox protein Nkx-2.3; AltName: Full=Homeobox
protein NK-2 homolog 3; AltName: Full=Homeobox protein
NK-2 homolog C; AltName: Full=Nkx2-C
gi|6409472|gb|AAF08008.1|AF202036_1 homeobox transcription factor NKX2-3 [Mus musculus]
gi|49119715|gb|AAH72614.1| NK2 transcription factor related, locus 3 (Drosophila) [Mus
musculus]
Length = 362
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR++
Sbjct: 145 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 204
>gi|5052044|gb|AAD38415.1|AF155583_1 homeobox protein NKX2-3 [Mus musculus]
gi|148709959|gb|EDL41905.1| NK2 transcription factor related, locus 3 (Drosophila) [Mus
musculus]
Length = 362
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR++
Sbjct: 145 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 204
>gi|213626354|gb|AAI70509.1| XNkx-2.3 protein [Xenopus laevis]
Length = 335
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+P +++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRY
Sbjct: 150 RPKQRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLANSLKLTSTQVKIWFQNRRY 209
Query: 114 KTKRKQ 119
K KR++
Sbjct: 210 KCKRQR 215
>gi|147906382|ref|NP_001081667.1| NK2 homeobox 3 [Xenopus laevis]
gi|902063|gb|AAB49657.1| Nkx-related protein [Xenopus laevis]
Length = 335
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+P +++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRY
Sbjct: 150 RPKQRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLANSLKLTSTQVKIWFQNRRY 209
Query: 114 KTKRKQ 119
K KR++
Sbjct: 210 KCKRQR 215
>gi|904166|gb|AAA99179.1| putative [Xenopus laevis]
Length = 335
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+P +++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRY
Sbjct: 150 RPKQRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLANSLKLTSTQVKIWFQNRRY 209
Query: 114 KTKRKQ 119
K KR++
Sbjct: 210 KCKRQR 215
>gi|213626356|gb|AAI70510.1| XNkx-2.3 protein [Xenopus laevis]
Length = 335
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+P +++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRY
Sbjct: 150 RPKQRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLANSLKLTSTQVKIWFQNRRY 209
Query: 114 KTKRKQ 119
K KR++
Sbjct: 210 KCKRQR 215
>gi|904170|gb|AAA99181.1| putative [Xenopus laevis]
Length = 331
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+P +++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRY
Sbjct: 145 RPKQRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLANSLKLTSTQVKIWFQNRRY 204
Query: 114 KTKRKQ 119
K KR++
Sbjct: 205 KCKRQR 210
>gi|288558023|ref|NP_001165709.1| NK2 homeobox 3 [Xenopus laevis]
gi|904168|gb|AAA99180.1| putative [Xenopus laevis]
Length = 329
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+P +++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRY
Sbjct: 143 RPKQRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLANSLKLTSTQVKIWFQNRRY 202
Query: 114 KTKRKQ 119
K KR++
Sbjct: 203 KCKRQR 208
>gi|157821263|ref|NP_001101064.1| homeobox protein Nkx-2.3 [Rattus norvegicus]
gi|149040218|gb|EDL94256.1| NK2 transcription factor related, locus 3 (Drosophila) (predicted)
[Rattus norvegicus]
Length = 362
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR++
Sbjct: 145 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 204
>gi|18859103|ref|NP_571498.1| homeobox protein Nkx-2.3 [Danio rerio]
gi|1518147|gb|AAC05228.1| homeodomain protein Nkx2.3 [Danio rerio]
gi|68085521|gb|AAH66525.2| NK2 transcription factor related 3 [Danio rerio]
Length = 321
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A +LKLT TQVKIWFQNRRYK KR++
Sbjct: 142 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASTLKLTSTQVKIWFQNRRYKCKRQR 201
>gi|432936065|ref|XP_004082103.1| PREDICTED: homeobox protein Nkx-2.1 isoform 2 [Oryzias latipes]
Length = 337
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 148 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 206
Query: 117 R--------KQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
R + LQ GS ++VAV +LV++ P
Sbjct: 207 RQAKDKASQQHLQQDGGSCQQQQQQQQSPRRVAVPVLVKDGKP 249
>gi|162138990|ref|NP_001104636.1| homeobox protein Nkx-2.4 isoform 1 [Danio rerio]
gi|158253973|gb|AAI53954.1| Zgc:171531 protein [Danio rerio]
Length = 345
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 72/120 (60%), Gaps = 16/120 (13%)
Query: 43 ALSNLPGLA---QSQPP---TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKS 96
+ L G+A +S PP R+KR R FS AQV ELE+RF QKYLS PER +A
Sbjct: 138 GMGTLTGMADTTKSIPPLHAAPRRKR-RVLFSQAQVCELERRFKQQKYLSAPEREHLASM 196
Query: 97 LKLTETQVKIWFQNRRYKTKR-------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LT TQVKIWFQN RYK KR +QLQ EG+L + ++VAV +LV++ P
Sbjct: 197 IHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQ-QEGNL-CQQQQSPRRVAVPVLVKDGKP 254
>gi|432936063|ref|XP_004082102.1| PREDICTED: homeobox protein Nkx-2.1 isoform 1 [Oryzias latipes]
Length = 346
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 157 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 215
Query: 117 R--------KQLQLLEGSLNTPSAGNG--KKVAVKILVRESHP 149
R + LQ GS ++VAV +LV++ P
Sbjct: 216 RQAKDKASQQHLQQDGGSCQQQQQQQQSPRRVAVPVLVKDGKP 258
>gi|348588158|ref|XP_003479834.1| PREDICTED: homeobox protein Nkx-2.3-like [Cavia porcellus]
Length = 358
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR++
Sbjct: 145 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 204
>gi|426391132|ref|XP_004061938.1| PREDICTED: homeobox protein Nkx-2.4 [Gorilla gorilla gorilla]
Length = 275
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 11/100 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 110 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 168
Query: 118 ------KQLQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
+QLQ EG L P + ++VAV +LV++ P
Sbjct: 169 AKDKAAQQLQ-QEGGLGPPPPPPPSPRRVAVPVLVKDGKP 207
>gi|5734615|dbj|BAA83377.1| BbTTF-1 [Branchiostoma belcheri]
Length = 359
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
PT ++++ R FS AQVYELE+RF QKYLS PER +A+ + LT TQVKIWFQN RYK
Sbjct: 150 PTTQRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLAQLINLTPTQVKIWFQNHRYKC 209
Query: 116 KRK 118
KR+
Sbjct: 210 KRQ 212
>gi|3598976|gb|AAC35350.1| homeobox protein Nkx2-1 [Branchiostoma floridae]
Length = 360
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
PT ++++ R FS AQVYELE+RF QKYLS PER +A+ + LT TQVKIWFQN RYK
Sbjct: 151 PTTQRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLAQLINLTPTQVKIWFQNHRYKC 210
Query: 116 KRK 118
KR+
Sbjct: 211 KRQ 213
>gi|348510821|ref|XP_003442943.1| PREDICTED: homeobox protein Nkx-2.1-like isoform 2 [Oreochromis
niloticus]
Length = 338
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 63/101 (62%), Gaps = 9/101 (8%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 148 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 206
Query: 117 R--------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R +Q+Q GS + ++VAV +LV++ P
Sbjct: 207 RQAKDKASQQQMQQESGSCQQQQQQSPRRVAVPVLVKDGKP 247
>gi|348510819|ref|XP_003442942.1| PREDICTED: homeobox protein Nkx-2.1-like isoform 1 [Oreochromis
niloticus]
Length = 347
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 63/101 (62%), Gaps = 9/101 (8%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 157 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 215
Query: 117 R--------KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R +Q+Q GS + ++VAV +LV++ P
Sbjct: 216 RQAKDKASQQQMQQESGSCQQQQQQSPRRVAVPVLVKDGKP 256
>gi|72015860|ref|XP_783123.1| PREDICTED: uncharacterized protein LOC577823 [Strongylocentrotus
purpuratus]
Length = 344
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 16/111 (14%)
Query: 55 PPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
P + R++R R FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRY
Sbjct: 177 PKSARQRRKPRVLFSQAQVYELERRFKQQRYLSAPEREQMANVLKLTPTQVKIWFQNRRY 236
Query: 114 KTKR----KQLQLLEGSLNTPSAG-----------NGKKVAVKILVRESHP 149
K K+ K + L + +A + ++VAV +LVR+ P
Sbjct: 237 KNKKQRETKTIDLGTATAVAAAAAAARHQQNNDQYSARRVAVPVLVRDGKP 287
>gi|339240667|ref|XP_003376259.1| homeobox protein HMX1 [Trichinella spiralis]
gi|316975037|gb|EFV58496.1| homeobox protein HMX1 [Trichinella spiralis]
Length = 327
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 56/76 (73%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
QS+ RKK++R FS QV++LE F+A++YLS ERA++A SL+LTETQVKIWFQN
Sbjct: 173 VQSEVLAKRKKKTRTVFSRNQVFQLETTFDAKRYLSSAERANLANSLRLTETQVKIWFQN 232
Query: 111 RRYKTKRKQLQLLEGS 126
RR K KR+ + LE S
Sbjct: 233 RRNKWKRQMVADLEVS 248
>gi|1841449|emb|CAA72002.1| Nkx2-3 [Mus musculus]
Length = 336
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR++
Sbjct: 145 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 204
>gi|28971639|dbj|BAC65247.1| nk2.2 protein [Oryzias latipes]
Length = 161
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR
Sbjct: 17 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRA 76
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ E + + ++VAV +LVR+ P
Sbjct: 77 R---AEKGMEVTHLPSPRRVAVPVLVRDGKP 104
>gi|194205572|ref|XP_001915073.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX3-like [Equus
caballus]
Length = 358
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 224 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 283
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + +P+A + V V IL E
Sbjct: 284 KRQLAAELEAANLSPAAAQ-RIVRVPILYHE 313
>gi|350646750|emb|CCD58471.1| neural gene activation protein [Schistosoma mansoni]
Length = 1019
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 51/74 (68%), Gaps = 7/74 (9%)
Query: 46 NLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105
N GL+Q R+KR R F+ AQVYELE+RF QKYLS PER +++ + LT TQVK
Sbjct: 445 NFRGLSQ------RRKR-RVLFTQAQVYELERRFKQQKYLSAPEREHLSQLINLTPTQVK 497
Query: 106 IWFQNRRYKTKRKQ 119
IWFQN RYK KR Q
Sbjct: 498 IWFQNHRYKCKRAQ 511
>gi|269785071|ref|NP_001161491.1| vent 2 transcription factor [Saccoglossus kowalevskii]
gi|268054397|gb|ACY92685.1| vent 2 transcription factor [Saccoglossus kowalevskii]
Length = 242
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++KR+R AFS+ QVY+LEKRF AQKYLS ER DV++S+ L++TQVK WFQNRR K KR+
Sbjct: 67 KRKRARTAFSNEQVYKLEKRFRAQKYLSATEREDVSRSIGLSDTQVKTWFQNRRMKWKRE 126
Query: 119 Q 119
+
Sbjct: 127 R 127
>gi|26336883|dbj|BAC32125.1| unnamed protein product [Mus musculus]
Length = 450
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR++
Sbjct: 145 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 204
>gi|156382151|ref|XP_001632418.1| predicted protein [Nematostella vectensis]
gi|32816233|gb|AAP88432.1| NK-4 homeobox protein [Nematostella vectensis]
gi|156219473|gb|EDO40355.1| predicted protein [Nematostella vectensis]
Length = 293
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 64/108 (59%), Gaps = 14/108 (12%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P +++ R FS AQVYELE+RF QKYLS PER +A LKLT QVKIWFQN+RYK
Sbjct: 151 PKRIRRKPRVLFSQAQVYELERRFKGQKYLSAPERDHLASLLKLTPNQVKIWFQNKRYKC 210
Query: 116 KRKQLQL------LEGSLNTPSAGNGKKVAVKILVRES------HPYG 151
K++ ++ +E P ++VAV +LVR+ PYG
Sbjct: 211 KKQAMENKARAAGMESWYGLPP--EPRRVAVPVLVRDGETCFGREPYG 256
>gi|395752002|ref|XP_002830059.2| PREDICTED: homeobox protein Nkx-2.4 [Pongo abelii]
Length = 220
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 11/100 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 55 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 113
Query: 118 ------KQLQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
+QLQ EG L P + ++VAV +LV++ P
Sbjct: 114 AKDKAAQQLQ-QEGGLGPPPPPPPSPRRVAVPVLVKDGKP 152
>gi|449488191|ref|XP_002193507.2| PREDICTED: homeobox protein HMX2-like, partial [Taeniopygia
guttata]
Length = 300
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 55/83 (66%), Gaps = 8/83 (9%)
Query: 40 KPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
KP PG Q +P R FS AQV ELE+RF QKYLSGPER +A+ L+L
Sbjct: 13 KPGGSGRAPGQQQRRP--------RVLFSQAQVLELERRFQRQKYLSGPERELLARHLRL 64
Query: 100 TETQVKIWFQNRRYKTKRKQLQL 122
+ TQVKIWFQNRRYK+KR++ +L
Sbjct: 65 SPTQVKIWFQNRRYKSKRQRREL 87
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 45/53 (84%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
FS AQV ELE+RF QKYLSGPER +A+ L+L+ TQVKIWFQNRRYK+KR++
Sbjct: 162 FSQAQVLELERRFQRQKYLSGPERELLARHLRLSPTQVKIWFQNRRYKSKRQR 214
>gi|345311143|ref|XP_003429063.1| PREDICTED: homeobox protein HMX1-like [Ornithorhynchus anatinus]
Length = 229
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
A SQ +GRKK++R FS +QV+ LE F+A++YLS ERA +A SL+LTETQVKIWFQN
Sbjct: 86 AASQRASGRKKKTRTVFSRSQVFRLESTFDAKRYLSSSERAGLAASLQLTETQVKIWFQN 145
Query: 111 RRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
RR K KR+ LE + + SA + V V IL E
Sbjct: 146 RRNKWKRQLAAELEAANLSHSA--QRLVRVPILYHE 179
>gi|410932620|ref|XP_003979691.1| PREDICTED: homeobox protein Nkx-2.3-like [Takifugu rubripes]
Length = 353
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
++R R FS AQV+ELE+RF Q+YLS PER +A +LKLT QVKIWFQNRRYK KR++
Sbjct: 170 RRRPRVLFSQAQVFELERRFKQQRYLSAPEREHLATTLKLTSNQVKIWFQNRRYKCKRQR 229
>gi|165377177|ref|NP_001106998.1| homeobox protein HMX1 [Danio rerio]
gi|157987315|gb|ABW07819.1| homeobox transcription factor SOHo [Danio rerio]
Length = 282
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 11/170 (6%)
Query: 17 NNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELE 76
+ + + MS + DAR L G S+P + RKK++R FS +QV++LE
Sbjct: 112 DGVVDRKMSGCAVDEGDDARQL-----FDERSGPDTSEPGSARKKKTRTVFSRSQVFQLE 166
Query: 77 KRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEG-SLNTPSAGNG 135
F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+ LE + N S
Sbjct: 167 STFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLEAVNFNHNSQ--- 223
Query: 136 KKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYPLFYNMHSL 185
+ V V IL + S + ++ PP +NS+ YPL HS+
Sbjct: 224 RIVRVPILYHDKATPMSTLSFNV-SQVSPPLMGFSNSV-NYPLSSFAHSV 271
>gi|158300675|ref|XP_552227.3| AGAP012001-PA [Anopheles gambiae str. PEST]
gi|157013275|gb|EAL38806.3| AGAP012001-PA [Anopheles gambiae str. PEST]
Length = 505
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 17/119 (14%)
Query: 46 NLPGLAQSQPPTG----RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTE 101
+LP + P G +K++ R FS AQ YELE+RF Q+YLS PER +A ++LT
Sbjct: 344 SLPTTERGSHPNGLGGHKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTP 403
Query: 102 TQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNG-----------KKVAVKILVRESHP 149
TQVKIWFQN RYKTKR + +G+L+ G+G ++VAV +LVR+ P
Sbjct: 404 TQVKIWFQNHRYKTKRAAHE--KGALDHHHGGHGGGNGTGGLPSPRRVAVPVLVRDGKP 460
>gi|4151940|gb|AAD04630.1| homeodomain protein [Gallus gallus]
Length = 219
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 62/94 (65%), Gaps = 6/94 (6%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G+K++ R FS AQ YELE+RF Q+YLS PE+ +A ++LT TQVKIWFQN RYK K
Sbjct: 72 AGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEKEHLASLIRLTPTQVKIWFQNHRYKMK 131
Query: 117 RKQLQLLE-GSLNTPSAGNGKKVAVKILVRESHP 149
R + +E L +P ++VAV +L+R+ P
Sbjct: 132 RAPKKGMEVNPLPSP-----RRVAVPVLLRDGKP 160
>gi|260788312|ref|XP_002589194.1| nk homeobox 2-1 [Branchiostoma floridae]
gi|229274369|gb|EEN45205.1| nk homeobox 2-1 [Branchiostoma floridae]
Length = 238
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
PT ++++ R FS AQVYELE+RF QKYLS PER +A+ + LT TQVKIWFQN RYK
Sbjct: 29 PTTQRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLAQLINLTPTQVKIWFQNHRYKC 88
Query: 116 KRK 118
KR+
Sbjct: 89 KRQ 91
>gi|449505711|ref|XP_004186161.1| PREDICTED: LOW QUALITY PROTEIN: NK2 homeobox 3 [Taeniopygia
guttata]
Length = 359
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR++
Sbjct: 140 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 199
>gi|157103664|ref|XP_001648076.1| nk homeobox protein [Aedes aegypti]
gi|108869377|gb|EAT33602.1| AAEL014125-PA [Aedes aegypti]
Length = 303
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 34 DARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADV 93
D D P +A N G QS+ RKK++R FS AQV++LE F+ ++YLS ERA +
Sbjct: 155 DGSDRPSDSASPNSNGAMQSK----RKKKTRTVFSRAQVFQLESTFDMKRYLSSSERAGL 210
Query: 94 AKSLKLTETQVKIWFQNRRYKTKRKQLQLLE 124
A SL+LTETQVKIWFQNRR K KR+ LE
Sbjct: 211 AASLRLTETQVKIWFQNRRNKWKRQLAAELE 241
>gi|443699306|gb|ELT98862.1| hypothetical protein CAPTEDRAFT_172338 [Capitella teleta]
Length = 246
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 64/112 (57%), Gaps = 15/112 (13%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P +++ R FS AQVYELE+RF QKYLS PER +A + L+ TQVKIWFQN RYKT
Sbjct: 4 PLAHRRKRRVLFSQAQVYELERRFKQQKYLSAPEREQLAALIGLSPTQVKIWFQNHRYKT 63
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAP 167
K+ + +GS TPS+ + HP G D G+ PP+P
Sbjct: 64 KKGDKE-RDGSDGTPSSCKSPQ----------HPGGGD----MHGRATPPSP 100
>gi|199581457|gb|ACH89430.1| NK-like homeobox protein 2.1a [Capitella teleta]
Length = 263
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 64/112 (57%), Gaps = 15/112 (13%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P +++ R FS AQVYELE+RF QKYLS PER +A + L+ TQVKIWFQN RYKT
Sbjct: 21 PLAHRRKRRVLFSQAQVYELERRFKQQKYLSAPEREQLAALIGLSPTQVKIWFQNHRYKT 80
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAP 167
K+ + +GS TPS+ + HP G D G+ PP+P
Sbjct: 81 KKGDKE-RDGSDGTPSSCKSPQ----------HPGGGD----MHGRATPPSP 117
>gi|195047963|ref|XP_001992446.1| GH24198 [Drosophila grimshawi]
gi|193893287|gb|EDV92153.1| GH24198 [Drosophila grimshawi]
Length = 743
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 11/106 (10%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 575 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 634
Query: 119 QLQ-------LLEGSLNTPSAGNG----KKVAVKILVRESHPYGSD 153
Q + LL G P + ++VAV +LVR P D
Sbjct: 635 QNEKGYEHSGLLHGHGTHPHHPSALPSPRRVAVPVLVRNGKPCLGD 680
>gi|329665861|pdb|2L9R|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Homeobox
Protein Nkx-3.1 From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr6470a
Length = 69
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/50 (82%), Positives = 46/50 (92%)
Query: 71 QVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
QV ELE++F+ QKYLS PERA +AK+LKLTETQVKIWFQNRRYKTKRKQL
Sbjct: 15 QVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64
>gi|297676698|ref|XP_002816266.1| PREDICTED: homeobox protein Nkx-2.5 [Pongo abelii]
Length = 282
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLEG 125
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 145 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLES 204
Query: 126 SLN 128
+L
Sbjct: 205 ALR 207
>gi|327267424|ref|XP_003218502.1| PREDICTED: homeobox protein Nkx-2.3-like [Anolis carolinensis]
Length = 302
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRRYK KR++
Sbjct: 115 RRKPRVLFSQAQVFELERRFQQQRYLSAPERELLAGSLKLTSTQVKIWFQNRRYKCKRQR 174
>gi|405969603|gb|EKC34565.1| Homeobox protein Nkx-2.1 [Crassostrea gigas]
Length = 368
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 68/125 (54%), Gaps = 20/125 (16%)
Query: 44 LSNLPGLAQSQ------PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL 97
+S L GL Q + P T R+KR R FS AQVYELE+RF QKYLS PER +A +
Sbjct: 135 MSALGGLDQHKAGGIQFPITQRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMI 193
Query: 98 KLTETQVKIWFQNRRYKTKRK-------------QLQLLEGSLNTPSAGNGKKVAVKILV 144
LT TQVKIWFQN RYK KR+ ++P + +K AV +LV
Sbjct: 194 NLTPTQVKIWFQNHRYKCKRQLKDAKDKTDSSSPPSSPASSQQDSPRQPSPRKGAVSVLV 253
Query: 145 RESHP 149
++ P
Sbjct: 254 KDGKP 258
>gi|348552206|ref|XP_003461919.1| PREDICTED: homeobox protein HMX1-like [Cavia porcellus]
Length = 372
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR
Sbjct: 226 GRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKR 285
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
+ LE + +P G + V V +L ES
Sbjct: 286 QLAAELEAASLSPP-GAQRLVRVPVLYHES 314
>gi|348533379|ref|XP_003454183.1| PREDICTED: homeobox protein Nkx-2.3-like [Oreochromis niloticus]
Length = 360
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
++R R FS AQV+ELE+RF Q+YLS PER +A +LKLT QVKIWFQNRRYK KR++
Sbjct: 174 RRRPRVLFSQAQVFELERRFKQQRYLSAPEREHLATTLKLTSNQVKIWFQNRRYKCKRQR 233
>gi|441640906|ref|XP_003268311.2| PREDICTED: homeobox protein Nkx-2.4 [Nomascus leucogenys]
Length = 343
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 11/100 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 178 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 236
Query: 118 ------KQLQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
+QLQ EG L P + ++VAV +LV++ P
Sbjct: 237 AKDKAAQQLQ-QEGGLGPPPPPPPSPRRVAVPVLVKDGKP 275
>gi|11493712|gb|AAG35617.1|AF202037_1 homeobox transcription factor [Homo sapiens]
Length = 289
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 63/100 (63%), Gaps = 11/100 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 189 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 247
Query: 118 ------KQLQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
+QLQ EG L P + ++ AV +LV++ P
Sbjct: 248 AKDKAAQQLQ-QEGGLGPPPPPPPSPRRAAVPVLVKDGKP 286
>gi|12840763|dbj|BAB24945.1| unnamed protein product [Mus musculus]
gi|126522491|gb|AAI32559.1| NK2 transcription factor related, locus 6 (Drosophila) [Mus
musculus]
gi|187951317|gb|AAI39036.1| NK2 transcription factor related, locus 6 (Drosophila) [Mus
musculus]
Length = 216
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 8/93 (8%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK-RK 118
+++SR FS AQV LE+RF Q+YL+ PER +A +L+LT TQVKIWFQNRRYK+K ++
Sbjct: 50 QRKSRVLFSQAQVLALERRFKQQRYLTAPEREHLASALQLTSTQVKIWFQNRRYKSKSQR 109
Query: 119 QLQLLE--GSLNTPSAGNGKKVAVKILVRESHP 149
Q Q LE G P ++VAV +LV + P
Sbjct: 110 QDQTLELAGHPLAP-----RRVAVPVLVLDGKP 137
>gi|406587|emb|CAA53079.1| NK-type homeobox [Mus musculus]
Length = 458
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 325 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 384
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 385 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 414
>gi|72679443|gb|AAI00426.1| Nkx2-6 protein, partial [Mus musculus]
Length = 228
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 8/93 (8%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK-RK 118
+++SR FS AQV LE+RF Q+YL+ PER +A +L+LT TQVKIWFQNRRYK+K ++
Sbjct: 62 QRKSRVLFSQAQVLALERRFKQQRYLTAPEREHLASALQLTSTQVKIWFQNRRYKSKSQR 121
Query: 119 QLQLLE--GSLNTPSAGNGKKVAVKILVRESHP 149
Q Q LE G P ++VAV +LV + P
Sbjct: 122 QDQTLELAGHPLAP-----RRVAVPVLVLDGKP 149
>gi|344296031|ref|XP_003419713.1| PREDICTED: homeobox protein HMX3-like [Loxodonta africana]
Length = 282
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 9/117 (7%)
Query: 38 LPKPAALSNLPGL--------AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPE 89
LP+P + PG + + P RKK++R FS +QV++LE F+ ++YLS E
Sbjct: 124 LPRPEXXAAAPGTEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSE 183
Query: 90 RADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
RA +A SL LTETQVKIWFQNRR K KR+ LE + N A + V V IL E
Sbjct: 184 RAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA-NLSHAAAQRIVRVPILYHE 239
>gi|347970365|ref|XP_562540.3| AGAP003670-PA [Anopheles gambiae str. PEST]
gi|333468899|gb|EAL40614.3| AGAP003670-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 47/62 (75%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
K++ R FS QV ELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK+KR Q
Sbjct: 277 KRKPRILFSQGQVLELERRFRQQRYLSAPERETLASILKLTPTQVKIWFQNRRYKSKRVQ 336
Query: 120 LQ 121
++
Sbjct: 337 IE 338
>gi|189083746|ref|NP_001121125.1| homeobox protein Nkx-2.6 [Rattus norvegicus]
gi|169642273|gb|AAI60896.1| Nkx2-6 protein [Rattus norvegicus]
Length = 213
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 60/93 (64%), Gaps = 8/93 (8%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-K 118
+++ R FS AQV LE+RF Q+YLS PER +A L+LT TQVKIWFQNRRYK KR +
Sbjct: 50 RRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASVLQLTSTQVKIWFQNRRYKCKRQR 109
Query: 119 QLQLLE--GSLNTPSAGNGKKVAVKILVRESHP 149
Q Q LE G P ++VAV +LV + P
Sbjct: 110 QDQTLELAGHPLAP-----RRVAVPVLVLDVKP 137
>gi|410906941|ref|XP_003966950.1| PREDICTED: homeobox protein HMX1-like [Takifugu rubripes]
Length = 216
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
RKK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR
Sbjct: 83 ARKKKTRTVFSRSQVFQLESTFDLKRYLSSSERAGLAASLQLTETQVKIWFQNRRNKWKR 142
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
+ +E S TP + + V +L ES
Sbjct: 143 QITADMEAS-ATPCCAGQRVIRVPVLYSES 171
>gi|291190288|ref|NP_001167227.1| Homeobox protein Nkx-2.3 [Salmo salar]
gi|223648764|gb|ACN11140.1| Homeobox protein Nkx-2.3 [Salmo salar]
Length = 368
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 47/60 (78%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS QV+ELE+RF Q+YLS PER +A +LKLT TQVKIWFQNRRYK KR++
Sbjct: 186 RRKPRVLFSQVQVFELERRFKQQRYLSAPEREHLASTLKLTSTQVKIWFQNRRYKCKRQR 245
>gi|157820981|ref|NP_001099772.1| homeobox protein HMX3 [Rattus norvegicus]
gi|149061279|gb|EDM11702.1| similar to homeodomain protein (predicted) [Rattus norvegicus]
Length = 356
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|395842723|ref|XP_003794163.1| PREDICTED: homeobox protein HMX3 [Otolemur garnettii]
Length = 340
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 206 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 265
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 266 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 295
>gi|297481574|ref|XP_002707769.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.4 [Bos
taurus]
Length = 399
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-------KQ 119
FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR +Q
Sbjct: 245 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQ 304
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
LQ E L P + ++VAV +LV++ P
Sbjct: 305 LQ-QEAVLGPPPPPSPRRVAVPVLVKDGKP 333
>gi|26354585|dbj|BAC25141.1| unnamed protein product [Mus musculus]
Length = 192
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 8/93 (8%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK-RK 118
+++SR FS AQV LE+RF Q+YL+ PER +A +L+LT TQVKIWFQNRRYK+K ++
Sbjct: 26 QRKSRVLFSQAQVLALERRFKQQRYLTAPEREHLASALQLTSTQVKIWFQNRRYKSKSQR 85
Query: 119 QLQLLE--GSLNTPSAGNGKKVAVKILVRESHP 149
Q Q LE G P ++VAV +LV + P
Sbjct: 86 QDQTLELAGHPLAP-----RRVAVPVLVLDGKP 113
>gi|297687559|ref|XP_002821279.1| PREDICTED: homeobox protein HMX3 [Pongo abelii]
Length = 357
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|119905389|ref|XP_001254807.1| PREDICTED: homeobox protein Nkx-2.4 [Bos taurus]
Length = 294
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-------KQ 119
FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR +Q
Sbjct: 140 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQ 199
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
LQ E L P + ++VAV +LV++ P
Sbjct: 200 LQ-QEAVLGPPPPPSPRRVAVPVLVKDGKP 228
>gi|3395529|emb|CAA08911.1| homeodomain protein [Mus musculus]
Length = 356
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|157787085|ref|NP_032283.3| homeobox protein HMX3 [Mus musculus]
gi|341941024|sp|P42581.3|HMX3_MOUSE RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
H6 family member 3; AltName: Full=Homeobox protein
Nkx-5.1
gi|148685770|gb|EDL17717.1| H6 homeobox 3 [Mus musculus]
gi|223460068|gb|AAI39484.1| H6 homeo box 3 [Mus musculus]
gi|223460368|gb|AAI39483.1| H6 homeo box 3 [Mus musculus]
Length = 356
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|350592290|ref|XP_003483438.1| PREDICTED: homeobox protein Nkx-2.6-like [Sus scrofa]
Length = 301
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 56/87 (64%), Gaps = 10/87 (11%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR----KQLQL 122
FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRYK KR K L++
Sbjct: 141 FSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLEM 200
Query: 123 LEGSLNTPSAGNGKKVAVKILVRESHP 149
L ++VAV +LVR+ P
Sbjct: 201 AGHPLAP------RRVAVPVLVRDGKP 221
>gi|157743259|ref|NP_001099044.1| homeobox protein HMX3 [Homo sapiens]
gi|190359524|sp|A6NHT5.1|HMX3_HUMAN RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
H6 family member 3; AltName: Full=Homeobox protein
Nkx-5.1
gi|119569674|gb|EAW49289.1| hCG1781691 [Homo sapiens]
Length = 357
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|359080253|ref|XP_003587958.1| PREDICTED: homeobox protein HMX3-like [Bos taurus]
Length = 359
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 225 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 284
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 285 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 314
>gi|431908252|gb|ELK11852.1| Homeobox protein HMX3 [Pteropus alecto]
Length = 301
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 167 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 226
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 227 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 256
>gi|332212002|ref|XP_003255107.1| PREDICTED: homeobox protein HMX3 [Nomascus leucogenys]
Length = 357
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|410932797|ref|XP_003979779.1| PREDICTED: homeobox protein Nkx-2.5-like [Takifugu rubripes]
Length = 222
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
++R R FS AQV+ELE+RF Q+YLS PER +A +LKLT QVKIWFQNRRYK KR++
Sbjct: 39 RRRPRVLFSQAQVFELERRFKQQRYLSAPEREHLATTLKLTSNQVKIWFQNRRYKCKRQR 98
>gi|326807002|ref|NP_035050.2| homeobox protein Nkx-2.6 [Mus musculus]
gi|6016207|sp|P43688.2|NKX26_MOUSE RecName: Full=Homeobox protein Nkx-2.6; AltName: Full=Homeobox
protein NK-2 homolog F
gi|3098520|gb|AAC15674.1| homeobox protein NKX2-6 [Mus musculus]
gi|148704006|gb|EDL35953.1| NK2 transcription factor related, locus 6 (Drosophila), isoform
CRA_b [Mus musculus]
Length = 289
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 8/93 (8%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK-RK 118
+++SR FS AQV LE+RF Q+YL+ PER +A +L+LT TQVKIWFQNRRYK+K ++
Sbjct: 123 QRKSRVLFSQAQVLALERRFKQQRYLTAPEREHLASALQLTSTQVKIWFQNRRYKSKSQR 182
Query: 119 QLQLLE--GSLNTPSAGNGKKVAVKILVRESHP 149
Q Q LE G P ++VAV +LV + P
Sbjct: 183 QDQTLELAGHPLAP-----RRVAVPVLVLDGKP 210
>gi|348588233|ref|XP_003479871.1| PREDICTED: homeobox protein HMX3-like [Cavia porcellus]
Length = 357
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|410976267|ref|XP_003994544.1| PREDICTED: homeobox protein HMX3 [Felis catus]
Length = 242
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 108 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 167
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 168 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 197
>gi|344254398|gb|EGW10502.1| Homeobox protein HMX3 [Cricetulus griseus]
Length = 257
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 124 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 183
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 184 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 213
>gi|402881721|ref|XP_003904413.1| PREDICTED: homeobox protein HMX3 [Papio anubis]
Length = 357
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|345498467|ref|XP_001601482.2| PREDICTED: hypothetical protein LOC100117163 [Nasonia vitripennis]
Length = 531
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 77/136 (56%), Gaps = 19/136 (13%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A+SL+LTETQVKIWFQNRR K KR+
Sbjct: 358 RKKKTRTVFSRAQVFQLESTFDIKRYLSSSERAQLAQSLRLTETQVKIWFQNRRNKWKRQ 417
Query: 119 QLQLLEGSLNTPSAGNGKK-VAVKILVRESH--PYGSDYLYGTQGKLLPPAPSMANSLYY 175
L L T S + ++ V V IL E+ P G Q PP+ S A+ L +
Sbjct: 418 ----LAAELETNSIVHAQRLVRVPILYHEASVPPSSIGSSVGPQAP-GPPSVSSASGLAH 472
Query: 176 -----------YPLFY 180
P+FY
Sbjct: 473 PVPVGGTPTTAQPIFY 488
>gi|332835226|ref|XP_508090.3| PREDICTED: homeobox protein HMX3 [Pan troglodytes]
Length = 357
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|397490741|ref|XP_003816351.1| PREDICTED: homeobox protein HMX3 [Pan paniscus]
Length = 357
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|386637343|gb|AFJ12378.1| thyroid development-related transcription factor 1, partial
[Sebastiscus marmoratus]
Length = 236
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 64/102 (62%), Gaps = 12/102 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 132 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 190
Query: 119 ----------QLQLLEG-SLNTPSAGNGKKVAVKILVRESHP 149
Q Q +G +L A + ++VAV +LV++ P
Sbjct: 191 AKDKATQQLQQQQQQDGNNLQCQQAQSPRRVAVPVLVKDGKP 232
>gi|402594104|gb|EJW88030.1| homeobox domain-containing protein [Wuchereria bancrofti]
Length = 345
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK-QLQLLEG 125
F+ Q +ELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK K+ Q + + G
Sbjct: 210 FTKLQTFELERRFRTQRYLSAPEREQLAMQIRLTPTQVKIWFQNHRYKMKKTYQDKRVTG 269
Query: 126 SLNTP----SAGNGKKVAVKILVRESHPYGSDYLYGT 158
+L+ P + K++ V++LV + P +D++ GT
Sbjct: 270 NLSQPMPSINFSQSKRIPVQMLVHDGKPCPTDFVTGT 306
>gi|296221408|ref|XP_002756719.1| PREDICTED: homeobox protein HMX3 [Callithrix jacchus]
Length = 360
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 226 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 285
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 286 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 315
>gi|194041604|ref|XP_001928044.1| PREDICTED: homeobox protein HMX3 [Sus scrofa]
Length = 357
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|359322660|ref|XP_003639886.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-2.4 [Canis
lupus familiaris]
Length = 394
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 64/103 (62%), Gaps = 14/103 (13%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 226 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 284
Query: 118 ------KQLQLLEGSLN-----TPSAGNGKKVAVKILVRESHP 149
+QLQ +G L P + ++VAV +LV++ P
Sbjct: 285 AKDKAAQQLQ-QDGGLGPPPPPPPPPPSPRRVAVPVLVKDGKP 326
>gi|355562849|gb|EHH19443.1| hypothetical protein EGK_20147, partial [Macaca mulatta]
Length = 277
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 143 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 202
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 203 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 232
>gi|170048399|ref|XP_001852290.1| nk homeobox protein [Culex quinquefasciatus]
gi|167870534|gb|EDS33917.1| nk homeobox protein [Culex quinquefasciatus]
Length = 239
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 34 DARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADV 93
D D P +A N G Q++ RKK++R FS AQV++LE F+ ++YLS ERA +
Sbjct: 90 DGSDRPSDSASPNSNGAMQAK----RKKKTRTVFSRAQVFQLESTFDMKRYLSSSERAGL 145
Query: 94 AKSLKLTETQVKIWFQNRRYKTKRKQLQLLE 124
A SL+LTETQVKIWFQNRR K KR+ LE
Sbjct: 146 AASLRLTETQVKIWFQNRRNKWKRQLAAELE 176
>gi|149047394|gb|EDM00064.1| H6 homeo box 1 (predicted), isoform CRA_b [Rattus norvegicus]
Length = 333
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+K++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 191 RRKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQ 250
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
LE + +P G + V V +L ES P
Sbjct: 251 LAAELEAASLSPP-GAQRLVRVPVLYHESPP 280
>gi|297302006|ref|XP_002808561.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX3-like [Macaca
mulatta]
Length = 357
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 283 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 312
>gi|6754218|ref|NP_034575.1| homeobox protein HMX1 [Mus musculus]
gi|81861331|sp|O70218.1|HMX1_MOUSE RecName: Full=Homeobox protein HMX1; AltName: Full=Homeobox protein
H6
gi|2978515|gb|AAC24193.1| homeobox containing nuclear transcriptional factor Hmx1 [Mus
musculus]
gi|3253161|gb|AAC24324.1| homeobox containing nuclear transcriptional factor Hmx1 [Mus
musculus]
gi|148705536|gb|EDL37483.1| H6 homeobox 1 [Mus musculus]
gi|182888407|gb|AAI60207.1| H6 homeo box 1 [synthetic construct]
Length = 332
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GR+K++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR
Sbjct: 189 GRRKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKR 248
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
+ LE + +P G + V V +L ES
Sbjct: 249 QLAAELEAASLSPP-GAQRLVRVPVLYHES 277
>gi|403260089|ref|XP_003922520.1| PREDICTED: homeobox protein HMX3, partial [Saimiri boliviensis
boliviensis]
Length = 265
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 132 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 191
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 192 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 221
>gi|126283560|ref|XP_001363444.1| PREDICTED: thyroid transcription factor 1-like [Monodelphis
domestica]
Length = 349
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 159 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 217
Query: 119 ------QLQLLEGSLNTPSAGNG-KKVAVKILVRESHP 149
Q Q+ + S + ++VAV +LV++ P
Sbjct: 218 AKDKAAQQQMQQDSGSCQQQQQSPRRVAVPVLVKDGKP 255
>gi|312106277|ref|XP_003150682.1| hypothetical protein LOAG_15141 [Loa loa]
gi|307754153|gb|EFO13387.1| hypothetical protein LOAG_15141 [Loa loa]
Length = 234
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK-QLQLLEG 125
F+ Q +ELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTK+ Q + L G
Sbjct: 99 FTKLQTFELERRFRIQRYLSAPEREQLATQIRLTPTQVKIWFQNHRYKTKKTCQDKGLNG 158
Query: 126 SLNTPSA----GNGKKVAVKILVRESHPYGSDYLYGT 158
+L P + K++ V++LV + P +D + GT
Sbjct: 159 NLVQPMSSVNFSQSKRIPVQMLVHDGKPCPTDLVTGT 195
>gi|46047377|ref|NP_990864.1| homeobox protein HMX1 [Gallus gallus]
gi|82112982|sp|Q9DE09.1|HMX1_CHICK RecName: Full=Homeobox protein HMX1; AltName: Full=GH6; AltName:
Full=Homeobox protein H6
gi|12082651|gb|AAG48561.1|AF227921_1 homeodomain protein GH6 [Gallus gallus]
Length = 333
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR
Sbjct: 199 GRKKKTRTVFSRSQVFQLESTFDVKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR 258
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
+ LE + N A + V V IL E+ P
Sbjct: 259 QLAADLEAA-NLSHAAQ-RIVRVPILYHENSP 288
>gi|426376719|ref|XP_004055139.1| PREDICTED: homeobox protein Nkx-2.1 [Gorilla gorilla gorilla]
Length = 333
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 187 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 246
Query: 116 KR--------KQLQLLEGSLNTPSAGNG 135
KR +QLQ +++ S G G
Sbjct: 247 KRQAKDKAAQQQLQQDSAAISVGSGGAG 274
>gi|390177112|ref|XP_003736279.1| GA30058 [Drosophila pseudoobscura pseudoobscura]
gi|388858910|gb|EIM52352.1| GA30058 [Drosophila pseudoobscura pseudoobscura]
Length = 591
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 464 RKKKTRTVFSRAQVFQLESTFDMKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 523
Query: 119 QLQLLE 124
LE
Sbjct: 524 LAAELE 529
>gi|444729278|gb|ELW69703.1| Homeobox protein HMX3 [Tupaia chinensis]
Length = 333
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 199 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 258
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 259 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 288
>gi|156363429|ref|XP_001626046.1| predicted protein [Nematostella vectensis]
gi|156212908|gb|EDO33946.1| predicted protein [Nematostella vectensis]
Length = 131
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
++PP RK+R F+ AQ YELE+RF Q+YLS PER +A+ + LT TQVKIWFQN R
Sbjct: 2 NEPPKKRKRR--VLFTKAQTYELERRFRQQRYLSAPEREQLARIINLTPTQVKIWFQNHR 59
Query: 113 YKTKRKQLQLLEGSLNTPSA-GNGKKVAVKILVRESHP 149
YK K++ + +G L+ P + V V +LVR+ P
Sbjct: 60 YKFKKQNYE--KGPLSEPPPLFTPRTVPVPVLVRDGQP 95
>gi|157821167|ref|NP_001101833.1| homeobox protein HMX1 [Rattus norvegicus]
gi|149047393|gb|EDM00063.1| H6 homeo box 1 (predicted), isoform CRA_a [Rattus norvegicus]
Length = 196
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+K++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 54 RRKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQ 113
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGS 152
LE + +P G + V V +L ES P +
Sbjct: 114 LAAELEAASLSPP-GAQRLVRVPVLYHESPPAAT 146
>gi|433709|gb|AAA17047.1| homeobox protein [Gallus gallus]
Length = 368
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 79/144 (54%), Gaps = 13/144 (9%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR
Sbjct: 196 GRKKKTRTVFSRSQVFQLESTFDVKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR 255
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYP 177
LE + N A + V V IL E+ P S +G + PP + + Y P
Sbjct: 256 HVAADLEAA-NLSHAAQ-RIVRVPILYHENSP-ASALGFGLP-HMSPPLVGFSGGVSYPP 311
Query: 178 LFYNMHSLYGTQGKLLPPAPSMAN 201
G + LP PS+A+
Sbjct: 312 ---------GHLPRRLPSLPSLAD 326
>gi|117581726|gb|ABK41268.1| ventral nervous system defective 3 [Acropora millepora]
Length = 225
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
Q++ P+ +K++ R FS AQ+YELE+RF Q+YLS PER +A+ + L+ TQVKIWFQN
Sbjct: 84 QTEIPSTKKRKRRVLFSKAQIYELERRFRQQRYLSAPEREQLARLINLSPTQVKIWFQNH 143
Query: 112 RYKTKRK-----QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
RYK K++ L G P+ + V V +LV E
Sbjct: 144 RYKYKKQVGEKGHLHFTTGE-GLPAYAGPRIVPVPVLVHE 182
>gi|91090023|ref|XP_967446.1| PREDICTED: similar to H6 family homeobox 3 [Tribolium castaneum]
gi|270013529|gb|EFA09977.1| hypothetical protein TcasGA2_TC012136 [Tribolium castaneum]
Length = 432
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 73/136 (53%), Gaps = 20/136 (14%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 273 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 332
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRES------HPYGSDYLY------------GTQG 160
LE + N A + V V IL ES HP+ ++ GT G
Sbjct: 333 LAAELEAA-NMAHAAQ-RLVRVPILYHESANSTMRHPFEQNHALSLHHPLEVSRDGGTSG 390
Query: 161 KLLPPAPSMANSLYYY 176
+ SLYY+
Sbjct: 391 TSVTSPTGYPGSLYYH 406
>gi|56698825|gb|AAW23127.1| thyroid transcription factor 1 [Lampetra fluviatilis]
Length = 413
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 61/100 (61%), Gaps = 8/100 (8%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
T R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK K
Sbjct: 204 TPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 262
Query: 117 RK-------QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
R+ QLQ + ++VAV +LV++ P
Sbjct: 263 RQAKDKVSQQLQQDGAGGGGGQQQSPRRVAVPVLVKDGKP 302
>gi|312377606|gb|EFR24404.1| hypothetical protein AND_11037 [Anopheles darlingi]
Length = 461
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
K++ R FS QV ELE++F Q+YL+ PER +A LKLT TQVKIWFQNRRYK+KR Q
Sbjct: 285 KRKPRILFSQGQVLELERKFRQQRYLTAPERETLASILKLTPTQVKIWFQNRRYKSKRVQ 344
Query: 120 LQLLEGSLNTPSAGNGKKVAVKI 142
+EG ++ +G ++K
Sbjct: 345 ---IEGGHSSSLKCDGSSTSIKC 364
>gi|2627169|dbj|BAA23527.1| thyroid transcription factor-1 [Homo sapiens]
Length = 358
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 45/63 (71%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
PT ++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 144 PTAPGRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 203
Query: 116 KRK 118
KR+
Sbjct: 204 KRQ 206
>gi|442619623|ref|NP_001262674.1| H6-like-homeobox, isoform D [Drosophila melanogaster]
gi|440217544|gb|AGB96054.1| H6-like-homeobox, isoform D [Drosophila melanogaster]
Length = 718
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 467 RKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 526
Query: 119 QLQLLE 124
LE
Sbjct: 527 LAAELE 532
>gi|157113788|ref|XP_001657902.1| hypothetical protein AaeL_AAEL006595 [Aedes aegypti]
gi|108877577|gb|EAT41802.1| AAEL006595-PA [Aedes aegypti]
Length = 369
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 47/62 (75%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
K++ R FS QV ELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK+KR Q
Sbjct: 228 KRKPRILFSQGQVLELERRFRQQRYLSAPERETLAGILKLTPTQVKIWFQNRRYKSKRIQ 287
Query: 120 LQ 121
++
Sbjct: 288 IE 289
>gi|351694610|gb|EHA97528.1| Homeobox protein HMX3 [Heterocephalus glaber]
Length = 384
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 250 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 309
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 310 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 339
>gi|355707377|gb|AES02941.1| NK2 homeobox 1 [Mustela putorius furo]
Length = 370
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|221379760|ref|NP_732244.3| H6-like-homeobox, isoform C [Drosophila melanogaster]
gi|190359609|sp|Q9VEI9.3|HMX_DROME RecName: Full=Homeobox protein Hmx; Short=DHmx
gi|134085543|gb|ABO52830.1| IP08946p [Drosophila melanogaster]
gi|220903114|gb|AAF55432.3| H6-like-homeobox, isoform C [Drosophila melanogaster]
Length = 592
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 467 RKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 526
Query: 119 QLQLLE 124
LE
Sbjct: 527 LAAELE 532
>gi|300794954|ref|NP_001178387.1| NK2 homeobox 1 [Bos taurus]
gi|296475368|tpg|DAA17483.1| TPA: NK2 homeobox 1 isoform 1 [Bos taurus]
Length = 370
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|195158361|ref|XP_002020060.1| GL13779 [Drosophila persimilis]
gi|194116829|gb|EDW38872.1| GL13779 [Drosophila persimilis]
Length = 324
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 41 RKKKTRTVFSRAQVFQLESTFDMKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 100
Query: 119 QLQLLEGSLNTPSAGNGKK-VAVKILVRESHPYG 151
LE + A ++ V V +L R+ G
Sbjct: 101 LAAELEAANMANMAHAAQRLVRVAVLYRDGTTAG 134
>gi|395504277|ref|XP_003756482.1| PREDICTED: thyroid transcription factor 1-like [Sarcophilus
harrisii]
Length = 462
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 65/105 (61%), Gaps = 11/105 (10%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
QS P R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN
Sbjct: 268 QSAP---RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNH 323
Query: 112 RYKTKRK------QLQLLEGSLNTPSAGNG-KKVAVKILVRESHP 149
RYK KR+ Q Q+ + S + ++VAV +LV++ P
Sbjct: 324 RYKMKRQAKDKAAQQQMQQDSGSCQQQQQSPRRVAVPVLVKDGKP 368
>gi|2627171|dbj|BAA23529.1| thyroid transcriptional factor-1 [Homo sapiens]
Length = 371
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 45/63 (71%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
PT ++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PTAPGRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|335292460|ref|XP_003356737.1| PREDICTED: thyroid transcription factor 1-like isoform 2 [Sus
scrofa]
gi|335292462|ref|XP_001925552.2| PREDICTED: thyroid transcription factor 1-like isoform 1 [Sus
scrofa]
Length = 369
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|50979060|ref|NP_001003260.1| thyroid transcription factor 1 [Canis lupus familiaris]
gi|1174818|sp|P43698.1|TITF1_CANFA RecName: Full=Thyroid transcription factor 1; Short=TTF-1; AltName:
Full=Homeobox protein Nkx-2.1; AltName: Full=Thyroid
nuclear factor 1
gi|457489|emb|CAA54868.1| thyroid transcription factor-1 [Canis lupus familiaris]
Length = 371
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|426366479|ref|XP_004050285.1| PREDICTED: homeobox protein HMX3 [Gorilla gorilla gorilla]
Length = 563
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 429 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 488
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 489 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 518
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 280 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKX 339
Query: 116 KRKQLQLLEGSLNTPSAGNGK 136
+ L + S P++G +
Sbjct: 340 XXXKALLRDSS---PASGTDR 357
>gi|395838203|ref|XP_003792008.1| PREDICTED: thyroid transcription factor 1-like [Otolemur garnettii]
Length = 370
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|357617769|gb|EHJ70982.1| putative H6 family homeobox 3 [Danaus plexippus]
Length = 341
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 206 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 265
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHP 149
LE + N A + V V IL ES P
Sbjct: 266 LAAELEAA-NMAHAAQ-RLVRVPILYHESRP 294
>gi|4507715|ref|NP_003308.1| homeobox protein Nkx-2.1 isoform 2 [Homo sapiens]
gi|1174819|sp|P43699.1|NKX21_HUMAN RecName: Full=Homeobox protein Nkx-2.1; AltName: Full=Homeobox
protein NK-2 homolog A; AltName: Full=Thyroid nuclear
factor 1; AltName: Full=Thyroid transcription factor 1;
Short=TTF-1
gi|695583|emb|CAA58053.1| thyroid transcription factor 1 [Homo sapiens]
gi|767833|gb|AAC50125.1| thyroid transcription factor-1 [Homo sapiens]
gi|885890|gb|AAA86099.1| thyroid transcription factor 1 [Homo sapiens]
gi|1943579|gb|AAB52381.1| thyroid transcription factor-1 [Homo sapiens]
gi|31417473|gb|AAH06221.2| NK2 homeobox 1 [Homo sapiens]
gi|119586260|gb|EAW65856.1| thyroid transcription factor 1, isoform CRA_a [Homo sapiens]
gi|119586263|gb|EAW65859.1| thyroid transcription factor 1, isoform CRA_a [Homo sapiens]
gi|307685471|dbj|BAJ20666.1| NK2 homeobox 1 [synthetic construct]
gi|1095504|prf||2109234A thyroid transcription factor
Length = 371
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|431907341|gb|ELK11314.1| Thyroid transcription factor 1 [Pteropus alecto]
Length = 369
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|35505463|gb|AAH57607.1| NK2 homeobox 1 [Mus musculus]
Length = 372
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|222876055|gb|ACI25437.2| thyroid transcription factor-1 [Ovis aries]
Length = 370
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|226246556|ref|NP_033411.3| homeobox protein Nkx-2.1 [Mus musculus]
gi|226246558|ref|NP_001139670.1| homeobox protein Nkx-2.1 [Mus musculus]
gi|1717816|sp|P50220.1|NKX21_MOUSE RecName: Full=Homeobox protein Nkx-2.1; AltName: Full=Thyroid
nuclear factor 1; AltName: Full=Thyroid transcription
factor 1; Short=TTF-1
gi|885888|gb|AAA86100.1| thyroid transcription factor 1 [Mus musculus domesticus]
gi|51593716|gb|AAH80868.1| Nkx2-1 protein [Mus musculus]
gi|148704764|gb|EDL36711.1| thyroid transcription factor 1 [Mus musculus]
gi|1095503|prf||2109233A thyroid specific enhancer-binding protein
Length = 372
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|136462|sp|P23441.1|NKX21_RAT RecName: Full=Homeobox protein Nkx-2.1; AltName: Full=Thyroid
nuclear factor 1; AltName: Full=Thyroid transcription
factor 1; Short=TTF-1
gi|57423|emb|CAA37851.1| thyroid nuclear factor 1 [Rattus norvegicus]
Length = 372
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|410962062|ref|XP_003987594.1| PREDICTED: homeobox protein Nkx-2.1 isoform 1 [Felis catus]
gi|410962064|ref|XP_003987595.1| PREDICTED: homeobox protein Nkx-2.1 isoform 2 [Felis catus]
Length = 343
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|359323208|ref|XP_853978.3| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC611245
[Canis lupus familiaris]
Length = 1022
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 889 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 948
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 949 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 978
>gi|56718245|gb|AAW24458.1| homeodomain protein NK2a [Oikopleura dioica]
Length = 250
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP R+KR R FS AQV+ELE+RF QKYLS PER +A+ + LT TQVKIWFQN RY
Sbjct: 130 QPSAQRRKR-RVLFSQAQVFELERRFKQQKYLSAPEREALAQLINLTPTQVKIWFQNHRY 188
Query: 114 KTKR 117
K KR
Sbjct: 189 KMKR 192
>gi|332229168|ref|XP_003263763.1| PREDICTED: thyroid transcription factor 1-like [Nomascus
leucogenys]
Length = 366
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|395852000|ref|XP_003798534.1| PREDICTED: homeobox protein Nkx-2.4, partial [Otolemur garnettii]
Length = 264
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 59/92 (64%), Gaps = 10/92 (10%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-------KQ 119
FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR +Q
Sbjct: 106 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQ 165
Query: 120 LQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
LQ EG L P + ++VAV +LV++ P
Sbjct: 166 LQ-QEGGLGPPPPPPPSPRRVAVPVLVKDGKP 196
>gi|213972551|ref|NP_037225.1| homeobox protein Nkx-2.1 [Rattus norvegicus]
gi|149051269|gb|EDM03442.1| rCG62381 [Rattus norvegicus]
Length = 372
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|347963918|ref|XP_310605.5| AGAP000488-PA [Anopheles gambiae str. PEST]
gi|333466974|gb|EAA06491.5| AGAP000488-PA [Anopheles gambiae str. PEST]
Length = 598
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 471 RKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 530
Query: 119 QLQLLE 124
LE
Sbjct: 531 LAAELE 536
>gi|296214831|ref|XP_002753871.1| PREDICTED: thyroid transcription factor 1 isoform 1 [Callithrix
jacchus]
Length = 372
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 158 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 217
Query: 116 KRK 118
KR+
Sbjct: 218 KRQ 220
>gi|1906819|dbj|BAA07231.1| thyroid transcription factor-1 [Rattus norvegicus]
Length = 373
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 180 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 239
Query: 116 KRK 118
KR+
Sbjct: 240 KRQ 242
>gi|332030754|gb|EGI70430.1| BarH-like 2 homeobox protein [Acromyrmex echinatior]
Length = 196
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 50 LAQSQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
+ S PPT RK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W+
Sbjct: 44 MVNSAPPTSRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALSLSETQVKTWY 103
Query: 109 QNRRYKTKRK-QLQL 122
QNRR K KR+ QL+L
Sbjct: 104 QNRRTKWKRQNQLRL 118
>gi|47207662|emb|CAF94550.1| unnamed protein product [Tetraodon nigroviridis]
Length = 122
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQV+ELE+RF Q+YLS PER +A +LKLT TQVKIWFQNRRYK KR++
Sbjct: 7 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASALKLTSTQVKIWFQNRRYKCKRQR 66
>gi|345487554|ref|XP_001601700.2| PREDICTED: hypothetical protein LOC100117472 [Nasonia vitripennis]
Length = 293
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
Q P ++++ R F+ AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RY
Sbjct: 118 QFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASIIHLTPTQVKIWFQNHRY 177
Query: 114 KTKRK 118
K KR+
Sbjct: 178 KCKRQ 182
>gi|157987313|gb|ABW07818.1| homeobox transcription factor [Danio rerio]
Length = 297
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 169 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 228
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 229 LAAELEAA-NLSHAAAQRIVRVPILYHE 255
>gi|18858815|ref|NP_571709.1| homeobox protein HMX3 [Danio rerio]
gi|10444257|gb|AAG17822.1|AF288211_1 Nkx5-1 [Danio rerio]
Length = 297
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 169 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 228
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 229 LAAELEAA-NLSHAAAQRIVRVPILYHE 255
>gi|432903179|ref|XP_004077122.1| PREDICTED: homeobox protein HMX3-A-like [Oryzias latipes]
Length = 303
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 174 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 234 LAAELEAA-NLSHAAAQRIVRVPILYHE 260
>gi|358337450|dbj|GAA55812.1| homeobox protein DTH-2 [Clonorchis sinensis]
Length = 736
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 54/81 (66%), Gaps = 12/81 (14%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
GL+Q R+KR R F+ AQVYELE+RF QKYLS PER +++ + LT TQVKIWF
Sbjct: 239 GLSQ------RRKR-RVLFTQAQVYELERRFKQQKYLSAPEREHLSQIISLTPTQVKIWF 291
Query: 109 QNRRYKTKRKQ-----LQLLE 124
QN RYK KR Q + LLE
Sbjct: 292 QNHRYKCKRAQKDKESVSLLE 312
>gi|324510095|gb|ADY44226.1| Homeobox protein ceh-24 [Ascaris suum]
Length = 300
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 63/111 (56%), Gaps = 13/111 (11%)
Query: 20 TNNTMSYYGKKDIRDARDL-----------PKPAALSNLPGLAQSQPPTGRKKRSRAAFS 68
T++ +YG D R L P AA+ L L S P R+KR R FS
Sbjct: 71 TSSAAGWYGANDPRLMPRLGSGFGLNCGINPTQAAMHGL-QLPMSNHPGSRRKR-RVLFS 128
Query: 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
QVYELE+RF + KYL+ PER +A S+ LT TQVKIWFQN RYK KR++
Sbjct: 129 QNQVYELERRFRSSKYLTAPEREALANSIGLTATQVKIWFQNHRYKCKRQE 179
>gi|340711570|ref|XP_003394348.1| PREDICTED: barH-like 2 homeobox protein-like [Bombus terrestris]
gi|350416018|ref|XP_003490818.1| PREDICTED: barH-like 2 homeobox protein-like [Bombus impatiens]
Length = 222
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 56/72 (77%), Gaps = 2/72 (2%)
Query: 53 SQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
S PP+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W+QNR
Sbjct: 73 SGPPSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALSLSETQVKTWYQNR 132
Query: 112 RYKTKRK-QLQL 122
R K KR+ QL+L
Sbjct: 133 RTKWKRQNQLRL 144
>gi|82245462|sp|Q90XP0.1|HMX3A_ORYLA RecName: Full=Homeobox protein HMX3-A; AltName: Full=Homeobox
protein H6 family member 3-A; AltName: Full=Homeobox
protein Nkx-5.1.1; AltName: Full=OlNkx-5.1.1
gi|15637259|gb|AAL04484.1|AF365970_1 transcription factor Nkx5-1.1 [Oryzias latipes]
Length = 303
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 174 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 234 LAAELEAA-NLSHAAAQRIVRVPILYHE 260
>gi|380030545|ref|XP_003698906.1| PREDICTED: barH-like 2 homeobox protein-like [Apis florea]
Length = 222
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 56/72 (77%), Gaps = 2/72 (2%)
Query: 53 SQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
S PP+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W+QNR
Sbjct: 73 SGPPSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALSLSETQVKTWYQNR 132
Query: 112 RYKTKRK-QLQL 122
R K KR+ QL+L
Sbjct: 133 RTKWKRQNQLRL 144
>gi|82228888|sp|Q504H8.1|HMX3_DANRE RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
H6 family member 3; AltName: Full=Homeobox protein
Nkx-5.1
gi|63102121|gb|AAH95015.1| Homeo box (H6 family) 3 [Danio rerio]
gi|182891290|gb|AAI64241.1| Hmx3 protein [Danio rerio]
Length = 297
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 169 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 228
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 229 LAAELEAA-NLSHAAAQRIVRVPILYHE 255
>gi|348501548|ref|XP_003438331.1| PREDICTED: homeobox protein HMX3-A-like [Oreochromis niloticus]
Length = 303
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 174 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 233
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 234 LAAELEAA-NLSHAAAQRIVRVPILYHE 260
>gi|354496948|ref|XP_003510585.1| PREDICTED: hypothetical protein LOC100767995 [Cricetulus griseus]
Length = 455
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 322 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 381
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 382 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 411
>gi|338717912|ref|XP_003363722.1| PREDICTED: homeobox protein Nkx-2.1-like [Equus caballus]
gi|338717914|ref|XP_001915103.2| PREDICTED: homeobox protein Nkx-2.1-like isoform 1 [Equus caballus]
Length = 371
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 116 KRK 118
KR+
Sbjct: 217 KRQ 219
>gi|410901024|ref|XP_003963996.1| PREDICTED: homeobox protein HMX3-A-like [Takifugu rubripes]
Length = 301
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 172 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 231
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 232 LAAELEAA-NLSHAAAQRIVRVPILYHE 258
>gi|296475369|tpg|DAA17484.1| TPA: NK2 homeobox 1 isoform 2 [Bos taurus]
Length = 400
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 187 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 246
Query: 116 KRK 118
KR+
Sbjct: 247 KRQ 249
>gi|345304952|ref|XP_003428285.1| PREDICTED: homeobox protein Nkx-2.2-like [Ornithorhynchus anatinus]
Length = 266
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGS 126
FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR + E
Sbjct: 127 FSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRAR---AEKG 183
Query: 127 LNTPSAGNGKKVAVKILVRESHP 149
+ + ++VAV +LVR+ P
Sbjct: 184 MEVTPLPSPRRVAVPVLVRDGKP 206
>gi|281338831|gb|EFB14415.1| hypothetical protein PANDA_015015 [Ailuropoda melanoleuca]
Length = 321
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 165 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 224
Query: 116 KRK 118
KR+
Sbjct: 225 KRQ 227
>gi|195349077|ref|XP_002041073.1| GM15242 [Drosophila sechellia]
gi|194122678|gb|EDW44721.1| GM15242 [Drosophila sechellia]
Length = 280
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 51/68 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 135 RKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 194
Query: 119 QLQLLEGS 126
LE +
Sbjct: 195 LAAELEAA 202
>gi|116744386|dbj|BAF35857.1| NK-related homeobox 2.5 [Paralichthys olivaceus]
gi|126471033|dbj|BAF48115.1| homeobox protein NK [Paralichthys olivaceus]
Length = 171
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 68 SHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGSL 127
S AQV ELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR Q + SL
Sbjct: 1 SQAQVSELERRFKQQRYLSAPERDHLAGVLKLTLTQVKIWFQNRRYKCKR---QRQDQSL 57
Query: 128 NTPSAGNGKKVAVKILVRESHP 149
S ++V+V +LVR+ P
Sbjct: 58 EMVSLPPPRRVSVPVLVRDGKP 79
>gi|110754968|ref|XP_396835.3| PREDICTED: homeobox protein GBX-1-like [Apis mellifera]
Length = 222
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 56/72 (77%), Gaps = 2/72 (2%)
Query: 53 SQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
S PP+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W+QNR
Sbjct: 73 SGPPSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALSLSETQVKTWYQNR 132
Query: 112 RYKTKRK-QLQL 122
R K KR+ QL+L
Sbjct: 133 RTKWKRQNQLRL 144
>gi|348530386|ref|XP_003452692.1| PREDICTED: homeobox protein Nkx-2.6-like [Oreochromis niloticus]
Length = 263
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 10/84 (11%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR----KQLQL 122
FS +QV +LE+RF Q+YLS PER +A L+LT TQVKIWFQNRRYK KR K L+
Sbjct: 109 FSQSQVSQLERRFRQQRYLSAPEREHLAHVLQLTSTQVKIWFQNRRYKCKRQRQDKSLE- 167
Query: 123 LEGSLNTPSAGNGKKVAVKILVRE 146
L G L P ++VAV +LVR+
Sbjct: 168 LAGYLPAP-----RRVAVPVLVRD 186
>gi|170035843|ref|XP_001845776.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167878300|gb|EDS41683.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 266
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
K++ R FS QV ELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK+KR Q
Sbjct: 130 KRKPRILFSQGQVLELERRFRQQRYLSAPERETLAGMLKLTPTQVKIWFQNRRYKSKRIQ 189
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQG 160
+E + A + K A + L S + D + G G
Sbjct: 190 ---IENATAAKEAASVSKEAAEKLKDVSMEFPEDSVGGYSG 227
>gi|440903383|gb|ELR54052.1| Homeobox protein Nkx-2.6 [Bos grunniens mutus]
Length = 299
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 56 PTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PT R +R R FS AQV LE+RF Q+YLS PER +A +L+LT TQVKIWFQNRRYK
Sbjct: 128 PTARPRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYK 187
Query: 115 TKRKQ 119
KR++
Sbjct: 188 CKRQR 192
>gi|410932755|ref|XP_003979758.1| PREDICTED: homeobox protein HMX1-like [Takifugu rubripes]
Length = 196
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKK++R FS +QV++LE F+ ++YLS ERA +A +L LTETQVKIWFQNRR K KR
Sbjct: 67 GRKKKTRTVFSRSQVFQLESTFDVKRYLSSSERAGLAATLHLTETQVKIWFQNRRNKWKR 126
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYP 177
+ LE S P + + V V IL H G+ + G P +P + + YP
Sbjct: 127 QLAADLEAS-AVPQSSQ-RIVRVPILY---HDGGASLGFSLSGH--PVSPPVGG--FSYP 177
Query: 178 LFYNMHSL 185
L HS+
Sbjct: 178 LSPFAHSM 185
>gi|403263915|ref|XP_003924244.1| PREDICTED: thyroid transcription factor 1-like [Saimiri boliviensis
boliviensis]
Length = 402
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 188 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 247
Query: 116 KRK 118
KR+
Sbjct: 248 KRQ 250
>gi|157138199|ref|XP_001664172.1| homeobox protein nk-2 [Aedes aegypti]
gi|108880657|gb|EAT44882.1| AAEL003794-PA [Aedes aegypti]
Length = 292
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 43 ALSNLPGLAQS--------QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVA 94
A+SN+ LA Q P ++++ R F+ QV+ELE+RF QKYLS PER +A
Sbjct: 190 AMSNMGSLAACSMTDTKPMQFPLAQRRKRRVLFTQHQVFELERRFKQQKYLSAPEREHLA 249
Query: 95 KSLKLTETQVKIWFQNRRYKTKRK 118
+ LT TQVKIWFQN RYK KR+
Sbjct: 250 SIISLTPTQVKIWFQNHRYKCKRQ 273
>gi|2065054|emb|CAA72693.1| Nkx2-8 [Gallus gallus]
Length = 193
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 10/108 (9%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
++++ R FS QV ELE+RF QKYLS ER +A L+LT TQVKIWFQNRRYK KR
Sbjct: 63 QRRKPRVLFSQTQVLELERRFKQQKYLSALEREHLANVLQLTSTQVKIWFQNRRYKCKRQ 122
Query: 118 KQLQLLE-GSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLP 164
+Q + LE + P ++VAV +LVR+ G G+Q L P
Sbjct: 123 RQDRSLEMATYPLPP----RRVAVPVLVRD----GKPCFEGSQPHLAP 162
>gi|126273319|ref|XP_001376242.1| PREDICTED: homeobox protein HMX3-like [Monodelphis domestica]
Length = 358
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 229 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 288
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 289 LAAELEAA-NLSHAAAQRIVRVPILYHE 315
>gi|118766339|ref|NP_001073136.1| homeobox protein Nkx-2.1 isoform 1 [Homo sapiens]
gi|1199865|gb|AAA89066.1| thyroid transcription factor 1 [Homo sapiens]
gi|32879889|gb|AAP88775.1| thyroid transcription factor 1 [Homo sapiens]
gi|60656173|gb|AAX32650.1| thyroid transcription factor 1 [synthetic construct]
gi|119586262|gb|EAW65858.1| thyroid transcription factor 1, isoform CRA_c [Homo sapiens]
gi|123989724|gb|ABM83890.1| thyroid transcription factor 1 [synthetic construct]
gi|123999264|gb|ABM87210.1| thyroid transcription factor 1 [synthetic construct]
Length = 401
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 187 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 246
Query: 116 KRK 118
KR+
Sbjct: 247 KRQ 249
>gi|383848446|ref|XP_003699861.1| PREDICTED: barH-like 2 homeobox protein-like [Megachile rotundata]
Length = 222
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 55/70 (78%), Gaps = 2/70 (2%)
Query: 55 PPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
PP+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W+QNRR
Sbjct: 75 PPSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALSLSETQVKTWYQNRRT 134
Query: 114 KTKRK-QLQL 122
K KR+ QL+L
Sbjct: 135 KWKRQNQLRL 144
>gi|313233386|emb|CBY24501.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP R+KR R FS AQV+ELE+RF QKYLS PER +A+ + LT TQVKIWFQN RY
Sbjct: 130 QPSAQRRKR-RVLFSQAQVFELERRFKQQKYLSAPEREALAQLINLTPTQVKIWFQNHRY 188
Query: 114 KTKR 117
K KR
Sbjct: 189 KMKR 192
>gi|114652691|ref|XP_509911.2| PREDICTED: thyroid transcription factor 1 isoform 3 [Pan
troglodytes]
gi|297694951|ref|XP_002824735.1| PREDICTED: thyroid transcription factor 1-like isoform 2 [Pongo
abelii]
Length = 401
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 187 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 246
Query: 116 KRK 118
KR+
Sbjct: 247 KRQ 249
>gi|109083372|ref|XP_001089773.1| PREDICTED: homeobox protein Nkx-2.1-like isoform 1 [Macaca mulatta]
gi|402875978|ref|XP_003901764.1| PREDICTED: thyroid transcription factor 1-like [Papio anubis]
Length = 401
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 187 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 246
Query: 116 KRK 118
KR+
Sbjct: 247 KRQ 249
>gi|296214833|ref|XP_002753872.1| PREDICTED: thyroid transcription factor 1 isoform 2 [Callithrix
jacchus]
Length = 402
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 188 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 247
Query: 116 KRK 118
KR+
Sbjct: 248 KRQ 250
>gi|443699307|gb|ELT98863.1| hypothetical protein CAPTEDRAFT_40416, partial [Capitella teleta]
Length = 94
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R F+ AQ+YELE+RF QKYLS PER +A + LT TQVKIWFQN RYKTK+
Sbjct: 1 RRKR-RILFTQAQIYELERRFKQQKYLSAPEREHLASMIGLTPTQVKIWFQNHRYKTKKS 59
Query: 119 QL---QLLEGSLNTPSAGNGKKVAVKILVRESHP 149
Q ++ + S + K+VAV +LV++ P
Sbjct: 60 QKDKDKVDHSQQHKQSPPSPKRVAVPVLVKDGKP 93
>gi|301780164|ref|XP_002925499.1| PREDICTED: homeobox protein Nkx-2.1-like [Ailuropoda melanoleuca]
Length = 342
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 186 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 245
Query: 116 KRK 118
KR+
Sbjct: 246 KRQ 248
>gi|49170098|ref|NP_990468.1| homeobox protein Nkx-2.6 [Gallus gallus]
gi|2117156|emb|CAA71665.1| NKX2.8 [Gallus gallus]
Length = 193
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 66/112 (58%), Gaps = 10/112 (8%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P ++++ R FS QV ELE+RF QKYLS ER +A L+LT TQVKIWFQNRRYK
Sbjct: 59 PKQPQRRKPRVLFSQTQVLELERRFKQQKYLSALEREHLANVLQLTSTQVKIWFQNRRYK 118
Query: 115 TKR-KQLQLLE-GSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLP 164
KR +Q + LE + P +KVAV +LVR G G+Q L P
Sbjct: 119 CKRQRQDRSLEMATYPLPP----RKVAVPVLVRN----GKPCFEGSQPHLAP 162
>gi|119586261|gb|EAW65857.1| thyroid transcription factor 1, isoform CRA_b [Homo sapiens]
Length = 243
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 29 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 88
Query: 116 KRK 118
KR+
Sbjct: 89 KRQ 91
>gi|444722475|gb|ELW63167.1| Homeobox protein Nkx-2.4 [Tupaia chinensis]
Length = 203
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 53 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 112
Query: 116 KRK 118
KR+
Sbjct: 113 KRQ 115
>gi|432923640|ref|XP_004080488.1| PREDICTED: homeobox protein HMX3-B-like [Oryzias latipes]
Length = 290
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 165 RKKKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 224
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A + V V IL +S
Sbjct: 225 LAAELEAA-NMSHAAAQRIVRVPILYHDS 252
>gi|426228645|ref|XP_004023406.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-1-like [Ovis
aries]
Length = 293
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 50 LAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
L S PPTG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQ
Sbjct: 180 LDSSAPPTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQ 239
Query: 110 NRRYKTKRK 118
NRR K KR+
Sbjct: 240 NRRAKWKRR 248
>gi|354477347|ref|XP_003500882.1| PREDICTED: hypothetical protein LOC100774866 [Cricetulus griseus]
Length = 262
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 43/53 (81%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR++
Sbjct: 131 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQR 183
>gi|269849690|sp|O17319.3|HM24_CAEBR RecName: Full=Homeobox protein ceh-24
Length = 293
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 21 NNTMSYYGKKDIR-DARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRF 79
N + ++Y D R A P A+ + Q ++++ R FS AQVYELE+RF
Sbjct: 104 NGSQNWYNGNDARFAAAAALLPCAIDPVRSAINHQFSMSQRRKRRVLFSQAQVYELERRF 163
Query: 80 NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KYL+ PER +A S++LT TQVKIWFQN RYK KR++
Sbjct: 164 KQAKYLTAPEREQLANSIRLTPTQVKIWFQNHRYKCKRQE 203
>gi|432920094|ref|XP_004079835.1| PREDICTED: homeobox protein HMX1-like [Oryzias latipes]
gi|15637265|gb|AAL04487.1|AF365973_1 transcription factor Nkx5-3 [Oryzias latipes]
Length = 255
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 74/121 (61%), Gaps = 9/121 (7%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 124 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLQLTETQVKIWFQNRRNKWKRQ 183
Query: 119 QLQLLE-GSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYP 177
+E G P A + + V V +L RE S L PPA +A+++ +P
Sbjct: 184 ITADMEAGGALVPFASH-RVVRVPVLYREDASASSSAFT----HLHPPA--LADAV-NFP 235
Query: 178 L 178
L
Sbjct: 236 L 236
>gi|393906712|gb|EJD74371.1| hypothetical protein LOAG_18305 [Loa loa]
Length = 315
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 17/107 (15%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G +++ R FS QVYELE+RF A KYL+ PER +A S+ L+ TQVKIWFQN RYK K
Sbjct: 131 VGSRRKRRVLFSQNQVYELERRFRASKYLTAPEREALANSIGLSATQVKIWFQNHRYKCK 190
Query: 117 R--KQLQLLEGSLN-----------TPSAGNG----KKVAVKILVRE 146
R K+ ++ +G+ TP+ +G KK+ V ILV++
Sbjct: 191 RQEKERKMTDGNRGRDESQSSGPSRTPTPLDGSNIDKKMNVSILVKD 237
>gi|317419511|emb|CBN81548.1| Homeobox protein HMX3-B [Dicentrarchus labrax]
Length = 290
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 165 RKKKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 224
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 225 LAAELEAA-NLSHAAAQRIVRVPILYHE 251
>gi|82245461|sp|Q90XN9.1|HMX3B_ORYLA RecName: Full=Homeobox protein HMX3-B; AltName: Full=Homeobox
protein H6 family member 3-B; AltName: Full=Homeobox
protein Nkx-5.1.2; AltName: Full=OlNkx-5.1.2
gi|15637261|gb|AAL04485.1|AF365971_1 transcription factor Nkx5-1.2 [Oryzias latipes]
Length = 290
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 165 RKKKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 224
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A + V V IL +S
Sbjct: 225 LAAELEAA-NMSHAAAQRIVRVPILYHDS 252
>gi|56718243|gb|AAW24457.1| homeodomain protein NK4 [Oikopleura dioica]
Length = 301
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
++SQ P R+K R FS AQV+ELE+RF Q+YLS PER +A+ L LT QVKIWFQN
Sbjct: 82 SESQTPRNRRK-PRVLFSQAQVFELERRFKQQRYLSAPERDQLAQMLNLTSQQVKIWFQN 140
Query: 111 RRYKTKRKQ 119
+RYK KR Q
Sbjct: 141 KRYKMKRLQ 149
>gi|119351691|gb|ABL63560.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351693|gb|ABL63561.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351695|gb|ABL63562.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351703|gb|ABL63566.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351705|gb|ABL63567.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351707|gb|ABL63568.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351711|gb|ABL63570.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351713|gb|ABL63571.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351715|gb|ABL63572.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351719|gb|ABL63574.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351721|gb|ABL63575.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351725|gb|ABL63577.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351727|gb|ABL63578.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351729|gb|ABL63579.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351733|gb|ABL63581.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351737|gb|ABL63583.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351741|gb|ABL63585.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351743|gb|ABL63586.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351745|gb|ABL63587.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351749|gb|ABL63589.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351751|gb|ABL63590.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351753|gb|ABL63591.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351755|gb|ABL63592.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351759|gb|ABL63594.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351763|gb|ABL63596.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351765|gb|ABL63597.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351767|gb|ABL63598.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351769|gb|ABL63599.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351771|gb|ABL63600.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351773|gb|ABL63601.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351775|gb|ABL63602.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351777|gb|ABL63603.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351779|gb|ABL63604.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351781|gb|ABL63605.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351783|gb|ABL63606.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351785|gb|ABL63607.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351787|gb|ABL63608.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351789|gb|ABL63609.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351791|gb|ABL63610.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351793|gb|ABL63611.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351795|gb|ABL63612.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351797|gb|ABL63613.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351799|gb|ABL63614.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351801|gb|ABL63615.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351803|gb|ABL63616.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351805|gb|ABL63617.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351807|gb|ABL63618.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351809|gb|ABL63619.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351811|gb|ABL63620.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351813|gb|ABL63621.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351815|gb|ABL63622.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351817|gb|ABL63623.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351819|gb|ABL63624.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351821|gb|ABL63625.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351823|gb|ABL63626.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351825|gb|ABL63627.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351827|gb|ABL63628.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351829|gb|ABL63629.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351831|gb|ABL63630.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351833|gb|ABL63631.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351835|gb|ABL63632.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351837|gb|ABL63633.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351839|gb|ABL63634.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351841|gb|ABL63635.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351843|gb|ABL63636.1| NK2 transcription factor related locus 5 [Homo sapiens]
Length = 101
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 33 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLE 91
>gi|268554494|ref|XP_002635234.1| C. briggsae CBR-CEH-24 protein [Caenorhabditis briggsae]
Length = 288
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 21 NNTMSYYGKKDIR-DARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRF 79
N + ++Y D R A P A+ + Q ++++ R FS AQVYELE+RF
Sbjct: 99 NGSQNWYNGNDARFAAAAALLPCAIDPVRSAINHQFSMSQRRKRRVLFSQAQVYELERRF 158
Query: 80 NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KYL+ PER +A S++LT TQVKIWFQN RYK KR++
Sbjct: 159 KQAKYLTAPEREQLANSIRLTPTQVKIWFQNHRYKCKRQE 198
>gi|417131|sp|Q00401.1|HMH2_DUGTI RecName: Full=Homeobox protein DTH-2
gi|9158|emb|CAA39855.1| Dth-2 protein [Girardia tigrina]
gi|312391|emb|CAA49140.1| g-Dth-2 [Girardia tigrina]
Length = 363
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQ+YELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 133 RRKR-RILFSQAQIYELERRFKQQKYLSAPEREHLANLINLTPTQVKIWFQNHRYKCKRS 191
Query: 119 Q 119
Q
Sbjct: 192 Q 192
>gi|313237943|emb|CBY13068.1| unnamed protein product [Oikopleura dioica]
Length = 303
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
++SQ P R+K R FS AQV+ELE+RF Q+YLS PER +A+ L LT QVKIWFQN
Sbjct: 84 SESQTPRNRRK-PRVLFSQAQVFELERRFKQQRYLSAPERDQLAQMLNLTSQQVKIWFQN 142
Query: 111 RRYKTKRKQ 119
+RYK KR Q
Sbjct: 143 KRYKMKRLQ 151
>gi|444722073|gb|ELW62777.1| Homeobox protein HMX1 [Tupaia chinensis]
Length = 535
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 361 RKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQ 420
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 421 LAAELEAA-NLSHAAAQRIVRVPILYHE 447
>gi|195391542|ref|XP_002054419.1| GJ24443 [Drosophila virilis]
gi|194152505|gb|EDW67939.1| GJ24443 [Drosophila virilis]
Length = 289
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 162 RKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 221
Query: 119 QLQLLE 124
LE
Sbjct: 222 LAAELE 227
>gi|477052|pir||A47715 cardiac-specific homeobox protein Csx - mouse
Length = 214
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 44/57 (77%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLL 123
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR++ L
Sbjct: 73 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRRTRL 129
>gi|358419224|ref|XP_003584166.1| PREDICTED: homeobox protein HMX3-like [Bos taurus]
Length = 359
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P RKK++R FS +QV ELE F+ ++YLS ERA +A SL LTETQVKIW QNRR K
Sbjct: 225 PACRKKKTRTVFSRSQVLELESTFDMKRYLSSSERAGLAASLHLTETQVKIWLQNRRNKW 284
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
KR+ LE + N A + V V IL E
Sbjct: 285 KRQLAAELEAA-NLSHAAAQRIVRVPILYHE 314
>gi|199581465|gb|ACH89434.1| NK-like homeobox protein 4a [Capitella teleta]
Length = 237
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQVYELE+RF Q+YLS PER +A LK++ QVKIWFQNRRYK KR
Sbjct: 168 KRKPRVLFSQAQVYELERRFKQQRYLSAPEREQLAAMLKMSSQQVKIWFQNRRYKMKRQT 227
Query: 118 --KQLQLLE 124
K L+L E
Sbjct: 228 QDKTLELAE 236
>gi|313246141|emb|CBY35091.1| unnamed protein product [Oikopleura dioica]
Length = 170
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
QP R+KR R FS AQV+ELE+RF QKYLS PER +A+ + LT TQVKIWFQN RY
Sbjct: 2 QPSAQRRKR-RVLFSQAQVFELERRFKQQKYLSAPEREALAQLINLTPTQVKIWFQNHRY 60
Query: 114 KTKR 117
K KR
Sbjct: 61 KMKR 64
>gi|348508580|ref|XP_003441832.1| PREDICTED: homeobox protein HMX3-B-like [Oreochromis niloticus]
Length = 290
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 165 RKKKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 224
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 225 LAAELEAA-NLSHAAAQRIVRVPILYHE 251
>gi|119351717|gb|ABL63573.1| NK2 transcription factor related locus 5 [Homo sapiens]
Length = 101
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-KQLQLLE 124
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR +Q Q LE
Sbjct: 33 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRLRQDQTLE 91
>gi|358339616|dbj|GAA47642.1| homeobox protein Nkx-5 [Clonorchis sinensis]
Length = 1054
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS QV++LE FNA++YLS ER +AK+L+LTETQVKIWFQNRR K KR+
Sbjct: 516 RKKKTRTVFSRNQVHQLESTFNAKRYLSSSERVVLAKTLQLTETQVKIWFQNRRNKWKRQ 575
Query: 119 QLQLLEGSL 127
E S+
Sbjct: 576 ATTDFETSV 584
>gi|11066244|gb|AAG28516.1|AF197146_1 homeobox protein NkxD, partial [Sycon raphanus]
Length = 161
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 49/63 (77%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ RA F+ QV ELE RF +Q+Y+S PER +++ LKL+ETQVKIWFQNRRYK K+
Sbjct: 78 KKRKPRALFTRQQVVELESRFKSQRYVSAPERQELSARLKLSETQVKIWFQNRRYKCKKS 137
Query: 119 QLQ 121
L+
Sbjct: 138 SLE 140
>gi|56718241|gb|AAW24456.1| homeodomain protein NK2b [Oikopleura dioica]
Length = 246
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP+ +KKR R F+ AQ YELE+RF Q+YLS PER +A S+ LT TQVKIWFQN RYK
Sbjct: 100 PPSKKKKR-RILFTKAQTYELERRFRQQRYLSAPEREQLAHSINLTPTQVKIWFQNHRYK 158
Query: 115 TKRKQLQLLEGSLNT 129
K+ + + S+NT
Sbjct: 159 LKKSRTNDDQFSVNT 173
>gi|301620145|ref|XP_002939439.1| PREDICTED: homeobox protein Nkx-2.4-like [Xenopus (Silurana)
tropicalis]
Length = 266
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 44/59 (74%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
K++ R FS AQVYELEKRF QKYL+ PER +AK + LT QVKIWFQN RYK KR+
Sbjct: 121 KRKRRVLFSQAQVYELEKRFEHQKYLTAPEREQLAKHIHLTPNQVKIWFQNHRYKMKRQ 179
>gi|242017971|ref|XP_002429457.1| Homeobox protein Hmx, putative [Pediculus humanus corporis]
gi|212514389|gb|EEB16719.1| Homeobox protein Hmx, putative [Pediculus humanus corporis]
Length = 360
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 56 PTG-RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P G RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K
Sbjct: 217 PNGKRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNK 276
Query: 115 TKRKQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
KR+ LE + N A + V V IL E+
Sbjct: 277 WKRQLAAELEAA-NMAHAAQ-RLVRVPILYHEA 307
>gi|391346406|ref|XP_003747465.1| PREDICTED: homeobox protein Nkx-2.5-like [Metaseiulus occidentalis]
Length = 266
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 12/114 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK--R 117
K++ R F+ QVY+LE+RF QKYL+ ER +A++LKL+ TQVKIWFQNRRYK+K R
Sbjct: 114 KRKPRILFTQTQVYQLEQRFKDQKYLTAQERELLAQTLKLSSTQVKIWFQNRRYKSKKQR 173
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGS-----DYLYGTQGKLLPPA 166
+ Q+ G P +KV I+V++ P + +Y Y G L PA
Sbjct: 174 ESQQVASGRQQFP-----RKVTTSIIVQDGRPASTGTARPEYGYSEFGHLPVPA 222
>gi|148229848|ref|NP_001079226.1| homeobox protein HMX3 [Xenopus laevis]
gi|82243609|sp|Q8JJ64.1|HMX3_XENLA RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
H6 family member 3; AltName: Full=Homeobox protein
Nkx-5.1; Short=X-nkx-5.1
gi|20385194|gb|AAM21210.1|AF368235_1 Nkx-5.1 [Xenopus laevis]
gi|213624988|gb|AAI69574.1| Nkx-5.1 homeodomain protein [Xenopus laevis]
gi|213627760|gb|AAI69576.1| Nkx-5.1 homeodomain protein [Xenopus laevis]
Length = 306
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 177 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 236
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKIL 143
LE + N A + V V IL
Sbjct: 237 LAAELEAA-NLSHAAAQRIVRVPIL 260
>gi|118403499|ref|NP_001072829.1| homeobox protein HMX3 [Xenopus (Silurana) tropicalis]
gi|123908806|sp|Q0P4W6.1|HMX3_XENTR RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
H6 family member 3; AltName: Full=Homeobox protein
Nkx-5.1
gi|112418486|gb|AAI21875.1| H6 family homeobox 3 [Xenopus (Silurana) tropicalis]
Length = 306
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 177 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 236
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKIL 143
LE + N A + V V IL
Sbjct: 237 LAAELEAA-NLSHAAAQRIVRVPIL 260
>gi|326932795|ref|XP_003212498.1| PREDICTED: homeobox protein Nkx-2.6-like [Meleagris gallopavo]
Length = 193
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 69/113 (61%), Gaps = 12/113 (10%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P ++++ R FS QV ELE+RF QKYLS ER +A L+LT TQVKIWFQNRRYK
Sbjct: 59 PKQPQRRKPRVLFSQTQVSELERRFKQQKYLSALEREHLANVLQLTSTQVKIWFQNRRYK 118
Query: 115 TKR-KQLQLLE-GSLNTPSAGNGKKVAVKILVRESHP-YGSDYLYGTQGKLLP 164
KR +Q + LE + P ++VAV +LVR+ P +G G+Q L P
Sbjct: 119 CKRQRQDRSLEMATYPLPP----RRVAVPVLVRDGKPCFG-----GSQPHLAP 162
>gi|196166489|gb|ACG70803.1| NK2.1 [Convolutriloba longifissura]
Length = 400
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
R+KR R F+ AQVYELE+RF QKYLS PER +A+ + LT TQVKIWFQN RYK KR
Sbjct: 202 RRKR-RVLFTQAQVYELERRFKQQKYLSAPEREALAQGINLTPTQVKIWFQNHRYKCKR 259
>gi|56181390|ref|NP_001007986.1| homeobox protein HMX3 [Gallus gallus]
gi|82070069|sp|O57601.1|HMX3_CHICK RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
H6 family member 3; AltName: Full=Homeobox protein
Nkx-5.1; Short=cNkx5-1
gi|2739307|emb|CAA75921.1| Nkx5-1 protein [Gallus gallus]
Length = 308
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 180 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 239
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 240 LAAELEAA-NLSHAAAQRIVRVPILYHE 266
>gi|195110703|ref|XP_001999919.1| GI24795 [Drosophila mojavensis]
gi|193916513|gb|EDW15380.1| GI24795 [Drosophila mojavensis]
Length = 307
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 180 RKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 239
Query: 119 QLQLLE 124
LE
Sbjct: 240 LAAELE 245
>gi|119351689|gb|ABL63559.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351709|gb|ABL63569.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351731|gb|ABL63580.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351739|gb|ABL63584.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351761|gb|ABL63595.1| NK2 transcription factor related locus 5 [Homo sapiens]
Length = 100
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 42/52 (80%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR+
Sbjct: 33 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQ 84
>gi|322790723|gb|EFZ15467.1| hypothetical protein SINV_04888 [Solenopsis invicta]
Length = 410
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 210 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 269
Query: 119 QLQLLEGS 126
LE +
Sbjct: 270 LAAELEAA 277
>gi|119351677|gb|ABL63553.1| NK2 transcription factor related locus 5 [Homo sapiens]
Length = 100
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 42/52 (80%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR+
Sbjct: 33 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQ 84
>gi|296200322|ref|XP_002747548.1| PREDICTED: homeobox protein Nkx-2.4, partial [Callithrix jacchus]
Length = 163
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 60/95 (63%), Gaps = 10/95 (10%)
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR------ 117
R FS AQVY+LE+RFN KYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 2 RVLFSQAQVYDLERRFNHHKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKA 61
Query: 118 -KQLQLLEGSLN--TPSAGNGKKVAVKILVRESHP 149
+QLQ EG L P + ++VAV +LV++ P
Sbjct: 62 AQQLQ-QEGGLGPPPPPPPSPRRVAVPVLVKDGKP 95
>gi|327278938|ref|XP_003224216.1| PREDICTED: homeobox protein HMX1-like [Anolis carolinensis]
Length = 320
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 50/67 (74%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR
Sbjct: 176 GRKKKTRTVFSRSQVFQLESTFDVKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR 235
Query: 118 KQLQLLE 124
+ LE
Sbjct: 236 QLAADLE 242
>gi|260818166|ref|XP_002603955.1| gastrulation brain homeobox [Branchiostoma floridae]
gi|90101488|gb|ABD85192.1| gastrulation brain homeobox [Branchiostoma floridae]
gi|229289280|gb|EEN59966.1| gastrulation brain homeobox [Branchiostoma floridae]
Length = 252
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
GL P G+ +R R AF+ Q+ ELEK F+++KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 140 GLGSPAVPGGKTRRRRTAFTSEQLLELEKEFHSKKYLSLTERSQIAHALKLSEVQVKIWF 199
Query: 109 QNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILV 144
QNRR K KR + G+ NT K+ V I V
Sbjct: 200 QNRRAKWKR----VKAGNTNTRGPNPNPKIVVPIPV 231
>gi|410895429|ref|XP_003961202.1| PREDICTED: homeobox protein HMX3-B-like [Takifugu rubripes]
Length = 289
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 164 RKKKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 223
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V I+ E
Sbjct: 224 LAAELEAA-NLSHAAAQRIVRVPIIYHE 250
>gi|344250052|gb|EGW06156.1| Homeobox protein Nkx-2.5 [Cricetulus griseus]
Length = 223
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 43/53 (81%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR++
Sbjct: 74 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQR 126
>gi|195497398|ref|XP_002096082.1| GE25478 [Drosophila yakuba]
gi|194182183|gb|EDW95794.1| GE25478 [Drosophila yakuba]
Length = 262
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 137 RKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 196
Query: 119 QLQLLE 124
LE
Sbjct: 197 LAAELE 202
>gi|260830242|ref|XP_002610070.1| brain specific homeobox protein [Branchiostoma floridae]
gi|229295433|gb|EEN66080.1| brain specific homeobox protein [Branchiostoma floridae]
Length = 204
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R FS +Q+ LEKRF +QKYLS PER D+A +L LTETQVK WFQNRR K K
Sbjct: 100 RRRKARTVFSDSQLNGLEKRFESQKYLSTPERMDLAAALNLTETQVKTWFQNRR--MKHK 157
Query: 119 QLQLLEGSLNTPSAGNGKKVA 139
+LQ S PSA + VA
Sbjct: 158 KLQRKRESDRPPSASSADDVA 178
>gi|432119747|gb|ELK38627.1| Homeobox protein Nkx-2.4 [Myotis davidii]
Length = 124
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 5 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 64
Query: 116 KRK 118
KR+
Sbjct: 65 KRQ 67
>gi|383857607|ref|XP_003704296.1| PREDICTED: uncharacterized protein LOC100882296 [Megachile
rotundata]
Length = 617
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 54/88 (61%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P ++L G A G+ +R R AF+ Q+ ELEK+F KYLS P+R +VA SL LT
Sbjct: 475 PRLPADLAGCAAQHALLGKTRRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATSLMLT 534
Query: 101 ETQVKIWFQNRRYKTKRKQLQLLEGSLN 128
ETQVKIWFQNRR K KR + E N
Sbjct: 535 ETQVKIWFQNRRMKWKRSKKAQQEARAN 562
>gi|113204951|gb|ABI34209.1| RT01040p [Drosophila melanogaster]
gi|113205015|gb|ABI34241.1| RT01140p [Drosophila melanogaster]
Length = 263
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 138 RKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 197
Query: 119 QLQLLE 124
LE
Sbjct: 198 LAAELE 203
>gi|405956964|gb|EKC23204.1| Homeobox protein GBX-1 [Crassostrea gigas]
Length = 329
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 59/93 (63%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
+S P + + +R R AF+ Q+ ELEK F+++KYLS ER+ +A +LKL+E QVKIWFQNR
Sbjct: 205 RSAPVSIKTRRRRTAFTSEQLLELEKEFHSKKYLSLTERSHIAHNLKLSEVQVKIWFQNR 264
Query: 112 RYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILV 144
R K KR + ++ G N K+ V I V
Sbjct: 265 RAKWKRVKAGMIHGRAGPDQLSNKPKIVVPIPV 297
>gi|2624999|gb|AAB86603.1| NK-2 class homeodomain protein [Caenorhabditis briggsae]
Length = 297
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 52/79 (65%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P A+ + Q ++++ R FS AQVYELE+RF KYL+ PER +A S++LT
Sbjct: 126 PCAIDPVRSRINHQFSMSQRRKRRVLFSQAQVYELERRFKQAKYLTAPEREQLANSIRLT 185
Query: 101 ETQVKIWFQNRRYKTKRKQ 119
TQVKIWFQN RYK KR++
Sbjct: 186 PTQVKIWFQNHRYKCKRQE 204
>gi|390351581|ref|XP_003727687.1| PREDICTED: uncharacterized protein LOC100888710 [Strongylocentrotus
purpuratus]
Length = 381
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 11/101 (10%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
KR+R AF+ AQ+ ELEK F+ +YL P R ++AKSL LTE Q+KIWFQNRR K KR
Sbjct: 247 KRNRTAFTSAQLVELEKEFHFNRYLCRPRRVEMAKSLNLTERQIKIWFQNRRMKYKRDMK 306
Query: 121 QLLEGSLNTPSAGNGKKVAVKILVRES----HPYGSDYLYG 157
+ T A G KV+ +L R++ H G +L+G
Sbjct: 307 E-------TERAERGIKVSDSVLARQAERAGHVSGEPFLFG 340
>gi|319740950|gb|ADV68995.1| Nk2.1 homeobox [Patiria miniata]
Length = 204
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGSLNT 129
AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+ + N
Sbjct: 2 AQVYELERRFKQQKYLSAPEREHLASLINLTPTQVKIWFQNHRYKMKRQTKEKNMADNNN 61
Query: 130 PSAGNGKKVAVKILVRESHP 149
+ ++VAV +LV++ P
Sbjct: 62 VCHQSPRRVAVPVLVKDGKP 81
>gi|195453290|ref|XP_002073723.1| GK18982 [Drosophila willistoni]
gi|194169808|gb|EDW84709.1| GK18982 [Drosophila willistoni]
Length = 233
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS AQV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 106 RKKKTRTVFSRAQVFQLESTFDMKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ 165
Query: 119 QLQLLE 124
LE
Sbjct: 166 LAAELE 171
>gi|440909273|gb|ELR59197.1| Homeobox protein Nkx-2.1 [Bos grunniens mutus]
Length = 329
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 180 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 239
Query: 116 KRK 118
KR+
Sbjct: 240 KRQ 242
>gi|386783176|pdb|3RKQ|A Chain A, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
gi|386783177|pdb|3RKQ|B Chain B, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
Length = 58
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
GR+K R FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK+K
Sbjct: 1 GRRK-PRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>gi|157636|gb|AAA28617.1| regulatory DNA binding protein, partial [Drosophila melanogaster]
Length = 158
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 68 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 127
Query: 119 Q 119
Q
Sbjct: 128 Q 128
>gi|327267684|ref|XP_003218629.1| PREDICTED: homeobox protein HMX3-like [Anolis carolinensis]
Length = 341
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 212 RKKKTRTVFSRSQVFQLESTFDLKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 271
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKIL 143
LE ++ + +A + V V IL
Sbjct: 272 LAAELEAAILSHAAAQ-RIVRVPIL 295
>gi|195442103|ref|XP_002068799.1| GK17836 [Drosophila willistoni]
gi|194164884|gb|EDW79785.1| GK17836 [Drosophila willistoni]
Length = 500
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 55/86 (63%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+ +R R AF+ Q+ ELE+ F+A+KYLS ER+ +A SLKL+E QVKIWFQNRR K KR
Sbjct: 326 KSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRV 385
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILV 144
+ L L +G K+ V I V
Sbjct: 386 KAGLTSHGLGRNGVTSGTKIVVPIPV 411
>gi|312085787|ref|XP_003144818.1| hypothetical protein LOAG_09242 [Loa loa]
Length = 196
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 17/107 (15%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G +++ R FS QVYELE+RF A KYL+ PER +A S+ L+ TQVKIWFQN RYK K
Sbjct: 12 VGSRRKRRVLFSQNQVYELERRFRASKYLTAPEREALANSIGLSATQVKIWFQNHRYKCK 71
Query: 117 R--KQLQLLEGSL-----------NTPSAGNG----KKVAVKILVRE 146
R K+ ++ +G+ TP+ +G KK+ V ILV++
Sbjct: 72 RQEKERKMTDGNRGRDESQSSGPSRTPTPLDGSNIDKKMNVSILVKD 118
>gi|308220054|gb|ADO22599.1| ANTP class homeobox transcription factor ANTP37 [Mnemiopsis leidyi]
Length = 60
Score = 84.3 bits (207), Expect = 5e-14, Method: Composition-based stats.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KR R FS +Q++ LE+RFNAQKYLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 1 EKRVRTIFSISQLFRLERRFNAQKYLSASERARLAYSLQLTETQVKIWFQNRRAKWKRE 59
>gi|2564705|gb|AAB81844.1| NK-2 class homeodomain protein [Caenorhabditis elegans]
Length = 298
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF KYL+ PER +A S++LT TQVKIWFQN RYK KR+
Sbjct: 150 RRKR-RVLFSQAQVYELERRFKQAKYLTAPEREQLANSIRLTPTQVKIWFQNHRYKCKRQ 208
Query: 119 Q 119
+
Sbjct: 209 E 209
>gi|124054151|gb|ABM89265.1| NKX2-4 [Pongo pygmaeus]
Length = 206
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 126 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 184
>gi|71995902|ref|NP_506419.3| Protein CEH-24 [Caenorhabditis elegans]
gi|75024273|sp|Q9NLC2.1|HM24_CAEEL RecName: Full=Homeobox protein ceh-24
gi|6434296|emb|CAB60999.1| Protein CEH-24 [Caenorhabditis elegans]
Length = 299
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF KYL+ PER +A S++LT TQVKIWFQN RYK KR+
Sbjct: 150 RRKR-RVLFSQAQVYELERRFKQAKYLTAPEREQLANSIRLTPTQVKIWFQNHRYKCKRQ 208
Query: 119 Q 119
+
Sbjct: 209 E 209
>gi|395501931|ref|XP_003755340.1| PREDICTED: homeobox protein HMX3 [Sarcophilus harrisii]
Length = 282
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 153 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 212
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A + V V IL E
Sbjct: 213 LAAELEAA-NLSHAAAQRIVRVPILYHE 239
>gi|340723574|ref|XP_003400164.1| PREDICTED: hypothetical protein LOC100651894 [Bombus terrestris]
Length = 630
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 54/88 (61%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P ++L G A G+ +R R AF+ Q+ ELEK+F KYLS P+R +VA SL LT
Sbjct: 488 PRLPADLAGCAAQHALLGKTRRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATSLMLT 547
Query: 101 ETQVKIWFQNRRYKTKRKQLQLLEGSLN 128
ETQVKIWFQNRR K KR + E N
Sbjct: 548 ETQVKIWFQNRRMKWKRSKKAQQEARAN 575
>gi|161612278|gb|AAI55954.1| Unknown (protein for IMAGE:7974039) [Xenopus laevis]
Length = 160
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 31 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 90
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKIL 143
LE + N A + V V IL
Sbjct: 91 LAAELEAA-NLSHAAAQRIVRVPIL 114
>gi|259013247|ref|NP_001158368.1| brain-specific homeobox [Saccoglossus kowalevskii]
gi|196123797|gb|ACG70187.1| brain-specific homeobox protein [Saccoglossus kowalevskii]
Length = 233
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 27 YGKKDIRDARDLPKPAALSNLPGLAQSQPP--TGRKKRSRAAFSHAQVYELEKRFNAQKY 84
Y K + LP P S P L Q+ P R++++R FS Q+ LEKRF AQ+Y
Sbjct: 73 YSKATMEHPYILPAPPGYSYSP-LFQTDSPGKHCRRRKARTVFSDQQLNGLEKRFEAQRY 131
Query: 85 LSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
LS PER ++A SL L+ETQVK WFQNRR K K++Q
Sbjct: 132 LSTPERVELATSLSLSETQVKTWFQNRRMKHKKQQ 166
>gi|117581722|gb|ABK41266.1| ventral nervous system defective 1 [Acropora millepora]
Length = 215
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 11/99 (11%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP RK+R FS AQ YE E+RF Q+YLS PER +A+ + L+ TQVKIWFQN RYK
Sbjct: 87 PPKKRKRR--VLFSKAQTYEFERRFRQQRYLSAPEREQLARIINLSPTQVKIWFQNHRYK 144
Query: 115 TKRKQLQ---LLEGS-LNTPSAGNGKKVAVKILVRESHP 149
K++ + L +G+ L P + V V +LVR+ P
Sbjct: 145 YKKQSFEKGVLSDGAPLFAP-----RTVPVPVLVRDGQP 178
>gi|358340491|dbj|GAA48373.1| transcription factor related 3 K09343 homeobox protein Nkx-2.3
[Clonorchis sinensis]
Length = 451
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 23/157 (14%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GR+K R FS AQ++ELE RF Q+YLS ER +A +LK++ QVKIWFQNRRYK KR
Sbjct: 5 GRRK-PRILFSQAQIFELESRFKHQRYLSAQEREHLAATLKMSPQQVKIWFQNRRYKVKR 63
Query: 118 K-------QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMA 170
+ Q L+ S+ +A K A ++ + +G +L P +
Sbjct: 64 QQQDRSLEQATALQHSIRRHAATTEKGSASRV-------------FAVEGPILSPR-ART 109
Query: 171 NSLYYYPLFYNMHSLYGTQGKLLPPAPSMANSLYYYP 207
N++ P FY G Q K + +A+S+ YP
Sbjct: 110 NAVIPSPSFYADPQPLG-QFKWFHESRDLADSVRCYP 145
>gi|119351687|gb|ABL63558.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351701|gb|ABL63565.1| NK2 transcription factor related locus 5 [Homo sapiens]
Length = 100
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 42/52 (80%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR+
Sbjct: 33 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQ 84
>gi|119351679|gb|ABL63554.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351681|gb|ABL63555.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351683|gb|ABL63556.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351685|gb|ABL63557.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351697|gb|ABL63563.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351699|gb|ABL63564.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351723|gb|ABL63576.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351735|gb|ABL63582.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351747|gb|ABL63588.1| NK2 transcription factor related locus 5 [Homo sapiens]
gi|119351757|gb|ABL63593.1| NK2 transcription factor related locus 5 [Homo sapiens]
Length = 100
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 42/52 (80%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK KR+
Sbjct: 33 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQ 84
>gi|391329564|ref|XP_003739241.1| PREDICTED: homeobox protein HMX3-like [Metaseiulus occidentalis]
Length = 424
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 222 RKKKTRTVFTRSQVFQLESTFDCKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 281
Query: 119 QLQLLEGSLNTPSAGNGKK--VAVKILVRE------SHPYGSDYLYGTQGKLLPPAPSMA 170
+E + A V V IL E S P G T +LP PS A
Sbjct: 282 LAAEIEANSMAQHAAAAAHGIVRVPILYHEGGSSSSSSPTGVTTTVSTAASVLPLGPSEA 341
Query: 171 N 171
Sbjct: 342 T 342
>gi|269784915|ref|NP_001161609.1| Nkx1-like transcription factor [Saccoglossus kowalevskii]
gi|268054215|gb|ACY92594.1| Nkx1-like transcription factor [Saccoglossus kowalevskii]
Length = 339
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 99/202 (49%), Gaps = 30/202 (14%)
Query: 3 SMKDSEEYYKKINNNNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKR 62
S +D EE KI + T+ T + KD ++ D K + S A +G+ +R
Sbjct: 150 SHQDDEECEDKIIEKD-TDVTKTSNHDKDDKEPEDEEK-TSPSKKRKRAHDGTKSGKPRR 207
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R AF++ Q+ LE +F +YLS ER ++A SL LTETQVKIWFQNRR K K++ +
Sbjct: 208 ARTAFTYEQLVALENKFKQTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGM 267
Query: 123 LEGSLNTPSAGNGKKVAVKILVRESHP-------YGSDYLYGTQGKLLPPA---PSMANS 172
N P+ +S+P YG +YG+Q +P A P M N+
Sbjct: 268 ---DANAPTV-------------QSNPMPIGLPGYGPGLIYGSQVHYIPGASAIPYMLNT 311
Query: 173 --LYYYPLFYNMHSLYGTQGKL 192
+ Y P +MH Y T ++
Sbjct: 312 PGVAYSPSHAHMHQFYPTHSQM 333
>gi|291223907|ref|XP_002731951.1| PREDICTED: H6 homeobox 1-like [Saccoglossus kowalevskii]
Length = 306
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 77/127 (60%), Gaps = 8/127 (6%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 180 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 239
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYPL 178
LE + N A + V V IL ++ +G ++ T L+ P P +A Y P
Sbjct: 240 LAAELEAA-NMAHAAQ-RMVRVPILYHDNG-HGDNHYPPTS--LVSPYPGLA---AYQPP 291
Query: 179 FYNMHSL 185
+ ++ SL
Sbjct: 292 YPHLPSL 298
>gi|110761972|ref|XP_001122113.1| PREDICTED: hypothetical protein LOC726370 [Apis mellifera]
Length = 631
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 54/88 (61%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLT 100
P ++L G A G+ +R R AF+ Q+ ELEK+F KYLS P+R +VA SL LT
Sbjct: 488 PRLPADLAGCAAQHALLGKTRRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATSLMLT 547
Query: 101 ETQVKIWFQNRRYKTKRKQLQLLEGSLN 128
ETQVKIWFQNRR K KR + E N
Sbjct: 548 ETQVKIWFQNRRMKWKRSKKAQQEARAN 575
>gi|158287335|ref|XP_001688185.1| AGAP011253-PA [Anopheles gambiae str. PEST]
gi|157019601|gb|EDO64462.1| AGAP011253-PA [Anopheles gambiae str. PEST]
Length = 401
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R FS +Q +ELE+RF +YLS PER +A + LT TQVKIWFQN RYKTKR
Sbjct: 306 KKRKRRILFSKSQTFELERRFKQARYLSAPEREHLASMINLTPTQVKIWFQNHRYKTKRA 365
Query: 119 QLQLLEGSLNTPSAGNG----KKVAVKILVRESHP 149
Q + P G KK+ +LVR+ P
Sbjct: 366 QTEKSSCYGAPPPNVLGGSPPKKINPPVLVRDGKP 400
>gi|73963101|ref|XP_852202.1| PREDICTED: homeobox protein Nkx-2.8 [Canis lupus familiaris]
Length = 239
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ ELE+RF Q+YLS PER +A+ L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKRA 142
Query: 119 QLQLLEGSLNTP 130
+ G++ P
Sbjct: 143 RAPGAPGAMEPP 154
>gi|324497813|gb|ADY39555.1| putative homebox protein [Hottentotta judaicus]
Length = 283
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
TG+ +R+R AF++ Q+ LE +F +YLS ER ++A SL+LTETQVKIWFQNRR K K
Sbjct: 157 TGKPRRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLRLTETQVKIWFQNRRTKWK 216
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPY-GSDYLYGTQGKLLPPAPSMANSLYY 175
++ + N+P+ + A++ + PY + LYGTQ LP A +++
Sbjct: 217 KQNPGM---DANSPTIPPTQPTALQSSYPSNPPYTAAGLLYGTQIPYLPTATALS----- 268
Query: 176 YPLF 179
YP+
Sbjct: 269 YPIL 272
>gi|1857940|gb|AAB48514.1| homeodomain protein Nkx-3.2 [Mus musculus]
Length = 43
Score = 84.0 bits (206), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
FSHAQV+ELE+RFN Q+YLSGPERAD+A SLKLTETQVKIWFQ
Sbjct: 1 FSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQ 43
>gi|334310814|ref|XP_001366715.2| PREDICTED: homeobox protein Nkx-2.8-like [Monodelphis domestica]
Length = 264
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ ELE+RF Q+YLS PER +A+ L LT TQVKIWFQN RYK KR
Sbjct: 86 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLSLTPTQVKIWFQNHRYKMKRA 145
Query: 119 QLQLLEGSLNT----PSAGNGKKVAVKILV 144
G P+ G ++V V ILV
Sbjct: 146 GSHGPLGPACVADLRPTPGLLRRVVVPILV 175
>gi|308496759|ref|XP_003110567.1| CRE-CEH-24 protein [Caenorhabditis remanei]
gi|308243908|gb|EFO87860.1| CRE-CEH-24 protein [Caenorhabditis remanei]
Length = 303
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF KYL+ PER +A S++LT TQVKIWFQN RYK KR+
Sbjct: 154 RRKR-RVLFSQAQVYELERRFKQAKYLTAPEREQLANSIRLTPTQVKIWFQNHRYKCKRQ 212
Query: 119 Q 119
+
Sbjct: 213 E 213
>gi|6016209|sp|O70584.1|NKX28_MOUSE RecName: Full=Homeobox protein Nkx-2.8; AltName: Full=Homeobox
protein NK-2 homolog H; AltName: Full=Homeobox protein
Nkx-2.9
gi|3021504|emb|CAA75751.1| NK2 homeodomain transcription factor [Mus musculus]
Length = 235
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 41 PAALSNLPGLAQSQP---PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL 97
PA S L L + P P R+KR R FS AQ ELE+RF Q+YLS PER +A+ L
Sbjct: 60 PADSSQLASLRRESPGSDPEKRRKR-RVLFSKAQTLELERRFRQQRYLSAPEREQLARLL 118
Query: 98 KLTETQVKIWFQNRRYKTKR 117
+LT TQVKIWFQN RYK KR
Sbjct: 119 RLTPTQVKIWFQNHRYKLKR 138
>gi|344257866|gb|EGW13970.1| Homeobox protein Nkx-2.1 [Cricetulus griseus]
Length = 190
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER + + LT TQVKIWFQN RYK
Sbjct: 29 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLPSMIHLTPTQVKIWFQNHRYKM 88
Query: 116 KRK-QLQLLEGSLNTPSAGNGKKVA 139
KR+ + + + L S G G ++A
Sbjct: 89 KRQAKDKAAQQQLQQDSGGGGGELA 113
>gi|327278936|ref|XP_003224215.1| PREDICTED: homeobox protein HMX1-like [Anolis carolinensis]
Length = 221
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 50/67 (74%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR
Sbjct: 77 GRKKKTRTVFSRSQVFQLESTFDVKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR 136
Query: 118 KQLQLLE 124
+ LE
Sbjct: 137 QLAADLE 143
>gi|301621867|ref|XP_002940264.1| PREDICTED: homeobox protein HMX1-like [Xenopus (Silurana)
tropicalis]
Length = 278
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 11/128 (8%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+ RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K K
Sbjct: 144 SSRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWK 203
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRESH---------PYGSDYLYGTQGKLLPPAP 167
R+ LE + S + + V V IL E+ P+ S L G + P
Sbjct: 204 RQLAADLEAA--NISHTSQRIVRVPILYHENSAATSMGFNLPHVSPALVGFSSPVNYPLA 261
Query: 168 SMANSLYY 175
S+ NS+ +
Sbjct: 262 SIPNSVPF 269
>gi|443709719|gb|ELU04268.1| hypothetical protein CAPTEDRAFT_70572, partial [Capitella teleta]
Length = 74
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 47/65 (72%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S P+ +KK+ R FS AQ YELE+RF Q+YLS PER +A L+LT TQVKIWFQN R
Sbjct: 2 SDTPSAKKKKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASILRLTPTQVKIWFQNHR 61
Query: 113 YKTKR 117
YK K+
Sbjct: 62 YKLKK 66
>gi|300433310|gb|ADK13097.1| gastrulation brain homeobox protein [Branchiostoma lanceolatum]
Length = 245
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P G+ +R R AF+ Q+ ELEK F+++KYLS ER+ +A +LKL+E QVKIWFQNRR K
Sbjct: 150 PGGKTRRRRTAFTSEQLLELEKEFHSKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKW 209
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVKILV 144
KR + G+ NT K+ V I V
Sbjct: 210 KR----VKAGNTNTRGPNPNPKIVVPIPV 234
>gi|321466876|gb|EFX77869.1| homeobox domain transcription factor [Daphnia pulex]
Length = 268
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GR++++R FS Q++ LE+RF Q+YLS PER ++A +L L+ETQVK WFQNRR K K
Sbjct: 145 GRRRKARTVFSDHQLHGLERRFEKQRYLSTPERVELAHALHLSETQVKTWFQNRRMKHK- 203
Query: 118 KQLQLLEG---SLNTPSAG 133
KQL+ E S NT S G
Sbjct: 204 KQLRRHEDKKHSCNTTSGG 222
>gi|242023322|ref|XP_002432083.1| brain-specific homeobox protein, putative [Pediculus humanus
corporis]
gi|212517457|gb|EEB19345.1| brain-specific homeobox protein, putative [Pediculus humanus
corporis]
Length = 342
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 13/117 (11%)
Query: 39 PKPAALSNLPGLAQSQPPTG--------RKKRSRAAFSHAQVYELEKRFNAQKYLSGPER 90
P+P LS PGL TG R++++R FS Q+ LEKRF AQ+YLS PER
Sbjct: 69 PEPFFLST-PGLPFGTLFTGLDLTGKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPER 127
Query: 91 ADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGN---GKKVAVKILV 144
++A +L L+ETQVK WFQNRR K K KQL+ + N + + GKK+ K +V
Sbjct: 128 VELANALNLSETQVKTWFQNRRMKYK-KQLRKINHDKNRQTVADDSTGKKIRKKKVV 183
>gi|117647245|ref|NP_001071100.1| homeobox protein Nkx-2.2 isoform 2 [Mus musculus]
gi|26335763|dbj|BAC31582.1| unnamed protein product [Mus musculus]
Length = 248
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK K
Sbjct: 125 AGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMK 184
Query: 117 R 117
R
Sbjct: 185 R 185
>gi|111154095|ref|NP_032727.2| homeobox protein Nkx-2.8 [Mus musculus]
gi|148704762|gb|EDL36709.1| NK2 transcription factor related, locus 9 (Drosophila) [Mus
musculus]
gi|187956537|gb|AAI50763.1| NK2 transcription factor related, locus 9 (Drosophila) [Mus
musculus]
Length = 235
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 41 PAALSNLPGLAQSQP---PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL 97
PA S L L + P P R+KR R FS AQ ELE+RF Q+YLS PER +A+ L
Sbjct: 60 PADSSQLASLRRESPGSDPEKRRKR-RVLFSKAQTLELERRFRQQRYLSAPEREQLARLL 118
Query: 98 KLTETQVKIWFQNRRYKTKR 117
+LT TQVKIWFQN RYK KR
Sbjct: 119 RLTPTQVKIWFQNHRYKLKR 138
>gi|345495087|ref|XP_003427431.1| PREDICTED: hypothetical protein LOC100679869 [Nasonia vitripennis]
Length = 649
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK++R F+ Q++ELEK+F +KYLS ERAD+AK L +TETQVKIWFQNRR K K++
Sbjct: 387 KKKKARTTFTGRQIFELEKQFEVKKYLSSSERADMAKLLNVTETQVKIWFQNRRTKWKKQ 446
>gi|126341054|ref|XP_001363814.1| PREDICTED: homeobox protein GBX-1-like [Monodelphis domestica]
Length = 424
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 43 ALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTET 102
AL PG + P G+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E
Sbjct: 305 ALDGPPGAPGASAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEV 364
Query: 103 QVKIWFQNRRYKTKR 117
QVKIWFQNRR K KR
Sbjct: 365 QVKIWFQNRRAKWKR 379
>gi|199581471|gb|ACH89437.1| NK-like homeobox protein 5 [Capitella teleta]
Length = 402
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 48/62 (77%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+ RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K K
Sbjct: 251 SARKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWK 310
Query: 117 RK 118
R+
Sbjct: 311 RQ 312
>gi|345483254|ref|XP_001602252.2| PREDICTED: hypothetical protein LOC100118230 [Nasonia vitripennis]
Length = 412
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 15/104 (14%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+ +R R AF+ Q+ ELE+ F+A+KYLS ER+ +A +LKL+E QVKIWFQNRR K KR
Sbjct: 233 KARRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRV 292
Query: 119 QLQLLEGSLNTPSA---------------GNGKKVAVKILVRES 147
+ L G P+A G G ++ V I V S
Sbjct: 293 KAGLTSGGAGNPAARHSGGGSSAGGHQSNGGGPRIVVPIPVHVS 336
>gi|354502256|ref|XP_003513203.1| PREDICTED: homeobox protein Nkx-2.8-like [Cricetulus griseus]
gi|344257867|gb|EGW13971.1| Homeobox protein Nkx-2.8 [Cricetulus griseus]
Length = 234
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 41 PAALSNLPGLAQSQP--PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK 98
PA S L L + P T ++++ R FS AQ ELE+RF Q+YLS PER +A+ L+
Sbjct: 60 PADTSQLTSLGPASPGSDTEKRRKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLR 119
Query: 99 LTETQVKIWFQNRRYKTKR 117
LT TQVKIWFQN RYK KR
Sbjct: 120 LTPTQVKIWFQNHRYKLKR 138
>gi|449496569|ref|XP_002197295.2| PREDICTED: uncharacterized protein LOC100223869 [Taeniopygia
guttata]
Length = 606
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 61/104 (58%), Gaps = 17/104 (16%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR- 117
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR
Sbjct: 427 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQVKIWFQNHRYKMKRQ 485
Query: 118 -------KQLQ-----LLEGSLNTPSAGNGKKVAVKILVRESHP 149
+QL G PS ++VAV +LV++ P
Sbjct: 486 AKDKAAAQQLHPDGAGGGGGLCQQPSP---RRVAVPVLVKDGKP 526
>gi|157135404|ref|XP_001656642.1| hypothetical protein AaeL_AAEL003277 [Aedes aegypti]
gi|108881271|gb|EAT45496.1| AAEL003277-PA [Aedes aegypti]
Length = 490
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ER ++AK L +TETQVKIWFQNRR K K++
Sbjct: 242 RKKKARTTFTGRQIFELEKQFEVKKYLSSSERTEMAKLLNVTETQVKIWFQNRRTKWKKQ 301
Query: 119 QLQLLEGSLN 128
+ GS N
Sbjct: 302 DGESAAGSAN 311
>gi|70570375|dbj|BAE06588.1| transcription factor protein [Ciona intestinalis]
Length = 292
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 45/54 (83%)
Query: 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
AAF+ AQV LE+RF QKYL+G ER + A +L+LTETQ+KIWFQNRRYKTKR+
Sbjct: 165 AAFTQAQVSALEQRFIQQKYLTGNERTEFAHALQLTETQIKIWFQNRRYKTKRR 218
>gi|198432523|ref|XP_002126042.1| PREDICTED: similar to NK3 homeobox 2 [Ciona intestinalis]
Length = 293
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 45/54 (83%)
Query: 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
AAF+ AQV LE+RF QKYL+G ER + A +L+LTETQ+KIWFQNRRYKTKR+
Sbjct: 166 AAFTQAQVSALEQRFIQQKYLTGNERTEFAHALQLTETQIKIWFQNRRYKTKRR 219
>gi|242004367|ref|XP_002423066.1| Homeobox protein GBX-1, putative [Pediculus humanus corporis]
gi|212505997|gb|EEB10328.1| Homeobox protein GBX-1, putative [Pediculus humanus corporis]
Length = 145
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
+R R AF+ Q+ ELE+ F+A+KYLS ER+ +A +LKL+E QVKIWFQNRR K KR +
Sbjct: 16 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIASTLKLSEVQVKIWFQNRRAKWKRVKA 75
Query: 121 QLLEGSLNTPSA---GNGKKVAVKI 142
L S S GNG K+ V I
Sbjct: 76 GLTSASAGRSSGGQTGNGTKIVVPI 100
>gi|226478924|emb|CAX72957.1| Asparagine-rich protein (Ag319) (ARP) (Fragment) [Schistosoma
japonicum]
Length = 484
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 47/62 (75%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+ +R R AF+ Q+ ELE++F + KYLS P+R +VA SL LTETQVKIWFQNRR K KR
Sbjct: 362 GKTRRPRTAFTSQQLLELEQQFISNKYLSRPKRFEVATSLGLTETQVKIWFQNRRMKWKR 421
Query: 118 KQ 119
Q
Sbjct: 422 SQ 423
>gi|157818327|ref|NP_001100202.1| homeobox protein Nkx-2.8 [Rattus norvegicus]
gi|149051271|gb|EDM03444.1| NK2 transcription factor related, locus 9 (Drosophila) (predicted)
[Rattus norvegicus]
Length = 234
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 41 PAALSNLPGLAQSQPPTGRKKRS--RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK 98
PA S L L ++ P + +KR R FS AQ ELE+RF Q+YLS PER +A+ L+
Sbjct: 60 PADSSQLASLGRASPGSDAEKRRKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLR 119
Query: 99 LTETQVKIWFQNRRYKTKR 117
LT TQVKIWFQN RYK KR
Sbjct: 120 LTPTQVKIWFQNHRYKLKR 138
>gi|122053852|gb|ABM65907.1| NKX2-4 [Ateles geoffroyi]
Length = 138
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 42 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 100
>gi|25151482|ref|NP_508815.2| Protein MLS-2 [Caenorhabditis elegans]
gi|351059204|emb|CCD67080.1| Protein MLS-2 [Caenorhabditis elegans]
Length = 341
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 48/66 (72%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S P RKK++R FS +QV +LE F ++YLS ER+++A+ L LTETQVKIWFQNRR
Sbjct: 194 SDPSQNRKKKTRTVFSRSQVSQLEMMFECKRYLSSQERSNLAQKLHLTETQVKIWFQNRR 253
Query: 113 YKTKRK 118
K KR+
Sbjct: 254 NKFKRQ 259
>gi|120974155|gb|ABM46648.1| NKX2-4 [Gorilla gorilla]
gi|121483851|gb|ABM54221.1| NKX2-4 [Pan paniscus]
gi|124111125|gb|ABM91940.1| NKX2-4 [Pan troglodytes]
Length = 130
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 54/88 (61%), Gaps = 12/88 (13%)
Query: 42 AALSNLPGLAQSQPPTG-----------RKKRSRAAFSHAQVYELEKRFNAQKYLSGPER 90
A + +L G+A + G R+KR R FS AQVYELE+RF QKYLS PER
Sbjct: 13 AGMGSLTGIADAAKSLGPLHAAAAAAAPRRKR-RVLFSQAQVYELERRFKQQKYLSAPER 71
Query: 91 ADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+A + LT TQVKIWFQN RYK KR+
Sbjct: 72 EHLASMIHLTPTQVKIWFQNHRYKMKRQ 99
>gi|402852392|ref|XP_003890907.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX1-like [Papio
anubis]
Length = 346
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 206 TRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAE 265
Query: 123 LE-GSLNTPSAGNGKKVAVKILVRESHP 149
LE SL+ P G + V V +L ES P
Sbjct: 266 LEAASLSPP--GAQRLVRVPVLYHESPP 291
>gi|195055953|ref|XP_001994877.1| GH13706 [Drosophila grimshawi]
gi|193892640|gb|EDV91506.1| GH13706 [Drosophila grimshawi]
Length = 752
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ER D+AK L +TETQVKIWFQNRR K K++
Sbjct: 403 RKKKARTTFTGRQIFELEKQFEVKKYLSSSERTDMAKLLMVTETQVKIWFQNRRTKWKKQ 462
>gi|357621727|gb|EHJ73462.1| hypothetical protein KGM_12980 [Danaus plexippus]
Length = 412
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 58/98 (59%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+ +R R AF+ Q+ ELEK+F KYLS P+R +VA SL LTETQVKIWFQNRR K KR
Sbjct: 252 GKTRRPRTAFTSQQLLELEKQFRMNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKR 311
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYL 155
+ + + P + + K + V E S ++
Sbjct: 312 SKKAQQDTKIKEPQSHDDKNKTKDVPVAEHDKQPSQHI 349
>gi|122934891|gb|ABM68190.1| NKX2-4 [Lagothrix lagotricha]
Length = 132
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 42 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 100
>gi|291403752|ref|XP_002718194.1| PREDICTED: NK2 homeobox 8 [Oryctolagus cuniculus]
Length = 236
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Query: 40 KPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
+P+AL PG + RKKR R FS AQ ELE+RF Q+YLS PER +A+ L+L
Sbjct: 69 RPSALPASPGSDAEK----RKKR-RVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRL 123
Query: 100 TETQVKIWFQNRRYKTKRKQ 119
T TQVKIWFQN RYK KR +
Sbjct: 124 TPTQVKIWFQNHRYKLKRAR 143
>gi|7497211|pir||T29739 hypothetical protein C39E6.3 - Caenorhabditis elegans
Length = 205
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 48/66 (72%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S P RKK++R FS +QV +LE F ++YLS ER+++A+ L LTETQVKIWFQNRR
Sbjct: 58 SDPSQNRKKKTRTVFSRSQVSQLEMMFECKRYLSSQERSNLAQKLHLTETQVKIWFQNRR 117
Query: 113 YKTKRK 118
K KR+
Sbjct: 118 NKFKRQ 123
>gi|432946150|ref|XP_004083792.1| PREDICTED: homeobox protein Nkx-2.4-like isoform 2 [Oryzias
latipes]
Length = 344
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT QVKIWFQN RYK KR+
Sbjct: 168 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLAGLIHLTPNQVKIWFQNHRYKLKRQ 226
>gi|432946148|ref|XP_004083791.1| PREDICTED: homeobox protein Nkx-2.4-like isoform 1 [Oryzias
latipes]
Length = 353
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT QVKIWFQN RYK KR+
Sbjct: 177 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLAGLIHLTPNQVKIWFQNHRYKLKRQ 235
>gi|363734506|ref|XP_003641408.1| PREDICTED: homeobox protein Nkx-2.8-like [Gallus gallus]
Length = 238
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK+ R FS AQ ELE+RF Q+YLS PER +A+ L LT TQVKIWFQN RYK KR
Sbjct: 85 KKKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLSLTPTQVKIWFQNHRYKMKRA 144
Query: 119 QLQLLEGSLNTPSAGNGKKVA--VKILVRESHP 149
+ + ++V V +L+R+ P
Sbjct: 145 RSEGPGSPPPPRPPALLRRVVMPVPVLLRDGEP 177
>gi|256073030|ref|XP_002572836.1| nk homeobox protein [Schistosoma mansoni]
gi|360042953|emb|CCD78363.1| putative nk homeobox protein [Schistosoma mansoni]
Length = 542
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS QVY LE F ++YLS ER +A++L+LTETQVKIWFQNRR K KR+
Sbjct: 196 RKKKTRTVFSRNQVYRLESTFALKRYLSSSERVGLARTLQLTETQVKIWFQNRRNKWKRQ 255
>gi|328717312|ref|XP_003246169.1| PREDICTED: hypothetical protein LOC100569881 [Acyrthosiphon pisum]
Length = 413
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+ +R R AF+ Q+ ELE+ F A+KYLS ER+++A SLKL+E QVKIWFQNRR K KR
Sbjct: 258 KSRRRRTAFTSGQLLELEREFQAKKYLSLTERSEIANSLKLSEVQVKIWFQNRRAKWKRV 317
Query: 119 QLQLLEG 125
+ LL G
Sbjct: 318 KASLLSG 324
>gi|169259802|ref|NP_001108570.1| homeobox protein HMX2 [Danio rerio]
gi|157987311|gb|ABW07817.1| homeobox transcription factor [Danio rerio]
Length = 267
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 145 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 204
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A V + ++ RE
Sbjct: 205 SAELEAA-NMAHASAQTLVGMPLVFRE 230
>gi|99030988|gb|ABF61779.1| gastrulation brain homeodomain [Nematostella vectensis]
Length = 228
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 6/104 (5%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
++R R AF+ Q+ +LE+ F+ +KY+S ER+ +A +L LTE QVKIWFQNRR K KR +
Sbjct: 131 RRRKRTAFTSKQLLQLEREFHNKKYVSLEERSVIATNLNLTEVQVKIWFQNRRAKWKRVR 190
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLL 163
SL+ P+ GN KK+ V LV +G+ ++ Q L
Sbjct: 191 ------SLSHPAHGNAKKINVPKLVVPIPIHGNRFVAMNQANAL 228
>gi|209972637|gb|ACJ03765.1| thyroid-specific transcription factor 1 [Bos taurus]
Length = 215
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 43/59 (72%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P+ +++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYK 215
>gi|395838201|ref|XP_003792007.1| PREDICTED: homeobox protein Nkx-2.8 [Otolemur garnettii]
Length = 237
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ ELE+RF Q+YLS PER +A+ L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKRA 142
Query: 119 QL 120
++
Sbjct: 143 RM 144
>gi|348518299|ref|XP_003446669.1| PREDICTED: homeobox protein Nkx-2.4-like isoform 1 [Oreochromis
niloticus]
Length = 348
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT QVKIWFQN RYK KR+
Sbjct: 168 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLAGLIHLTPNQVKIWFQNHRYKLKRQ 226
>gi|324120797|dbj|BAJ78788.1| Nkx2.2 homologue protein [Lethenteron camtschaticum]
Length = 228
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
++ R FS AQ +ELE+RF Q+YLS PER +A LKLT TQVKIWFQN RYK KR ++
Sbjct: 1 RKRRVLFSKAQTFELERRFRHQRYLSAPEREHLASLLKLTPTQVKIWFQNHRYKMKRARV 60
Query: 121 QLLEGSLNTPSA 132
+ +L+ P+
Sbjct: 61 EQGIHALHGPAC 72
>gi|348518301|ref|XP_003446670.1| PREDICTED: homeobox protein Nkx-2.4-like isoform 2 [Oreochromis
niloticus]
Length = 342
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT QVKIWFQN RYK KR+
Sbjct: 162 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLAGLIHLTPNQVKIWFQNHRYKLKRQ 220
>gi|292619817|ref|XP_002664095.1| PREDICTED: homeobox protein HMX3-like [Danio rerio]
Length = 145
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
RKK++R FS AQV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR
Sbjct: 47 CRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR 106
Query: 118 KQLQLLEGSLNTPSAGNGKKV 138
+ + L + S + +V
Sbjct: 107 Q----IAAELESASLSHAHRV 123
>gi|242009657|ref|XP_002425599.1| Homeobox protein ceh-19, putative [Pediculus humanus corporis]
gi|212509492|gb|EEB12861.1| Homeobox protein ceh-19, putative [Pediculus humanus corporis]
Length = 239
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 18/129 (13%)
Query: 58 GRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K K
Sbjct: 87 GRKPRRRRTAFTHAQLAFLERKFRCQKYLSVADRSDVAEALNLSETQVKTWYQNRRTKWK 146
Query: 117 RK-QLQLLEGSLNTPSAGNGKKVAVKILVRESHP-------YGSDYLY--GTQGKLLPPA 166
R+ QL+L + T V I+ R+ P GS Y GT P
Sbjct: 147 RQNQLRLEQLRQQT-------NVDKTIMSRQMSPRTENDNCCGSRYQSEPGTTCNFFPTT 199
Query: 167 PSMANSLYY 175
++ S+ Y
Sbjct: 200 AAILRSVTY 208
>gi|410915947|ref|XP_003971448.1| PREDICTED: homeobox protein Nkx-2.4-like [Takifugu rubripes]
Length = 324
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R+KR R FS AQVYELE+RF QKYLS PER +A + LT QVKIWFQN RYK KR+
Sbjct: 150 RRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLAGLIHLTPNQVKIWFQNHRYKLKRQ 208
>gi|390337673|ref|XP_782803.2| PREDICTED: uncharacterized protein LOC577485 [Strongylocentrotus
purpuratus]
Length = 383
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 55 PPT--GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
PPT G+ +R R AF+ Q+ ELE++F KYLS P+R +VA SL LTETQVKIWFQNRR
Sbjct: 195 PPTILGKTRRPRTAFTSQQLLELEQQFRKNKYLSRPKRFEVATSLMLTETQVKIWFQNRR 254
Query: 113 YKTKRKQ 119
K KR +
Sbjct: 255 MKWKRSK 261
>gi|326921532|ref|XP_003207011.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like
[Meleagris gallopavo]
Length = 210
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 14 INNNNITNNTMSYYGKKDIR--DARDLPKPAA--LSNLPGLAQSQP-PTGRKKRSRAAFS 68
+ N T + DI+ AR +P A LS GL Q+Q G+ +R R AF+
Sbjct: 2 VKRCNRTQMLCELFILGDIQAFTARGAEQPVAPALSRGVGLTQAQSNLLGKCRRPRTAFT 61
Query: 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
Q+ ELE +F KYLS P+R +VA SL LTETQVKIWFQNRR K KR
Sbjct: 62 SQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKR 110
>gi|47551103|ref|NP_999726.1| homeobox protein Hmx [Strongylocentrotus purpuratus]
gi|18202521|sp|Q26656.1|HMX_STRPU RecName: Full=Homeobox protein Hmx; Short=SpHmx; AltName:
Full=H6-like
gi|1332413|dbj|BAA12721.1| homeobox [Strongylocentrotus purpuratus]
Length = 405
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%)
Query: 54 QPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
Q P +KK++R FS +QV++LE F ++YLS ERA +A +L LTETQVKIWFQNRR
Sbjct: 247 QSPQKKKKKTRTVFSRSQVFQLESTFEVKRYLSSSERAGLAANLHLTETQVKIWFQNRRN 306
Query: 114 KTKRKQLQLLEGS 126
K KR+ LE +
Sbjct: 307 KWKRQMAAELESA 319
>gi|198470721|ref|XP_002133557.1| GA22961 [Drosophila pseudoobscura pseudoobscura]
gi|198145589|gb|EDY72185.1| GA22961 [Drosophila pseudoobscura pseudoobscura]
Length = 283
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 143 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKW 202
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 203 KRQNQLRL 210
>gi|341874136|gb|EGT30071.1| CBN-MLS-2 protein [Caenorhabditis brenneri]
Length = 335
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 49/66 (74%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S P RKK++R FS +QV +LE F+ ++YLS ER+++A+ L LTETQVKIWFQNRR
Sbjct: 191 SDPNQARKKKTRTVFSRSQVSQLEMMFDLKRYLSSQERSNLAQKLHLTETQVKIWFQNRR 250
Query: 113 YKTKRK 118
K KR+
Sbjct: 251 NKFKRQ 256
>gi|225708592|gb|ACO10142.1| Homeobox protein HMX2 [Osmerus mordax]
Length = 267
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 71/129 (55%), Gaps = 17/129 (13%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 143 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 202
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAP-SMANSLYYYPL 178
LE A N + + LV G ++ L P P S+A + PL
Sbjct: 203 SAELE-------AANMAHASAQTLV------GMPLVFRDNSLLRVPVPRSIA---FPTPL 246
Query: 179 FYNMHSLYG 187
+Y SL G
Sbjct: 247 YYPGSSLPG 255
>gi|148696573|gb|EDL28520.1| mCG4598, isoform CRA_a [Mus musculus]
Length = 155
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G+K++ R FS AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK K
Sbjct: 32 AGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMK 91
Query: 117 R 117
R
Sbjct: 92 R 92
>gi|195026859|ref|XP_001986351.1| GH20573 [Drosophila grimshawi]
gi|193902351|gb|EDW01218.1| GH20573 [Drosophila grimshawi]
Length = 514
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 52/79 (65%)
Query: 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEG 125
AF+ Q+ ELE+ F+A+KYLS ER+ +A SLKL+E QVKIWFQNRR K KR + L
Sbjct: 344 AFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAGLTSH 403
Query: 126 SLNTPSAGNGKKVAVKILV 144
L + NG K+ V I V
Sbjct: 404 GLGRNGSANGTKIVVPIPV 422
>gi|17738093|ref|NP_524433.1| tinman [Drosophila melanogaster]
gi|61252066|sp|P22711.2|TIN_DROME RecName: Full=Muscle-specific homeobox protein tinman; AltName:
Full=Msh-2; AltName: Full=NK-4
gi|7300744|gb|AAF55890.1| tinman [Drosophila melanogaster]
gi|211938641|gb|ACJ13217.1| FI07263p [Drosophila melanogaster]
Length = 416
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 301 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 360
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 361 IDCEGIAKHLKLKSEPLDSPTS 382
>gi|194211461|ref|XP_001916417.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-2-like [Equus
caballus]
Length = 348
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|259013281|ref|NP_001158358.1| gastrulation brain homeobox [Saccoglossus kowalevskii]
gi|32307777|gb|AAP79285.1| gastrulation brain homeobox [Saccoglossus kowalevskii]
Length = 295
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 56/88 (63%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+ + +R R AF+ Q+ ELEK F+++KYLS ER+ +A +LKL+E QVKIWFQNRR K K
Sbjct: 183 SSKTRRRRTAFTSEQLLELEKEFHSKKYLSLTERSQIASALKLSEVQVKIWFQNRRAKWK 242
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILV 144
R + + N + N K+ V I V
Sbjct: 243 RVKAGITNPRSNATTNNNAPKIVVPIPV 270
>gi|270010104|gb|EFA06552.1| hypothetical protein TcasGA2_TC009461 [Tribolium castaneum]
Length = 283
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 49/74 (66%)
Query: 44 LSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
L +L G G+ +R R AF+ Q+ ELEK+F KYLS P+R +VA SL LTETQ
Sbjct: 147 LPDLAGCGPGHALLGKTRRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATSLMLTETQ 206
Query: 104 VKIWFQNRRYKTKR 117
VKIWFQNRR K KR
Sbjct: 207 VKIWFQNRRMKWKR 220
>gi|10346|emb|CAA38978.1| msh-2 [Drosophila sp.]
Length = 416
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 301 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 360
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 361 IDCEGIAKHLKLKSEPLDSPTS 382
>gi|51092115|gb|AAT94471.1| RE01329p [Drosophila melanogaster]
Length = 416
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 301 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSTTQVKIWFQNRRYKSKRGD 360
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 361 IDCEGIAKHLKLKSEPLDSPTS 382
>gi|440808060|gb|AGC24173.1| Mnx, partial [Sepia officinalis]
Length = 240
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 51 AQSQPP-TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109
Q QP G+ +R R AF+ Q+ ELE++F KYLS P+R +VA SL LTETQVKIWFQ
Sbjct: 24 GQGQPTIVGKTRRPRTAFTSQQLLELERQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQ 83
Query: 110 NRRYKTKR 117
NRR K KR
Sbjct: 84 NRRMKWKR 91
>gi|348543453|ref|XP_003459198.1| PREDICTED: homeobox protein HMX2-like [Oreochromis niloticus]
Length = 195
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 64/110 (58%), Gaps = 10/110 (9%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS Q+++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 66 KKKTRTIFSKRQIFQLEATFDMKRYLSSSERACLASSLQLTETQVKIWFQNRRNKLKRQL 125
Query: 120 LQLLEGSLNTPSAGN-GKKVAVKILVRESHPYGSDYLYGTQGKLLP-PAP 167
+EG L GK V + ++S G G LLP P P
Sbjct: 126 STDMEGPLAADHFTEAGKNVQLPTFYKDSSLLG--------GCLLPMPFP 167
>gi|354502258|ref|XP_003513204.1| PREDICTED: hypothetical protein LOC100774339 [Cricetulus griseus]
Length = 379
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+ +++ R FS AQVYELE+RF QKYLS PER + + LT TQVKIWFQN RYK
Sbjct: 264 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLPSMIHLTPTQVKIWFQNHRYKM 323
Query: 116 KRK 118
KR+
Sbjct: 324 KRQ 326
>gi|195174927|ref|XP_002028217.1| GL13135 [Drosophila persimilis]
gi|194116716|gb|EDW38759.1| GL13135 [Drosophila persimilis]
Length = 282
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 142 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKW 201
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 202 KRQNQLRL 209
>gi|149415654|ref|XP_001520527.1| PREDICTED: homeobox protein HMX1-like, partial [Ornithorhynchus
anatinus]
Length = 75
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 8/75 (10%)
Query: 48 PGLAQSQPPTGR----KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
PG+A P GR KK++R FS +QV++LE F+A++YLS ERA +A SL+LTETQ
Sbjct: 3 PGVA----PPGRAASGKKKTRTIFSKSQVFQLESTFDAKRYLSSSERAGLAASLQLTETQ 58
Query: 104 VKIWFQNRRYKTKRK 118
VKIWFQNRR K KR+
Sbjct: 59 VKIWFQNRRNKLKRQ 73
>gi|121309576|dbj|BAF44111.1| gastrulation brain homeobox 2 [Rattus norvegicus]
Length = 154
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 43 ALEETPQSGGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 102
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 103 SEVQVKIWFQNRRAKWKR 120
>gi|195454284|ref|XP_002074171.1| GK14502 [Drosophila willistoni]
gi|194170256|gb|EDW85157.1| GK14502 [Drosophila willistoni]
Length = 424
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 310 KRKPRVLFSQAQVLELECRFRHKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKRGS 369
Query: 120 LQLLE 124
+ E
Sbjct: 370 IDSCE 374
>gi|55846778|gb|AAV67393.1| gastrulation brain homeobox 2 protein [Macaca fascicularis]
Length = 144
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 34 ALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 93
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 94 SEVQVKIWFQNRRAKWKR 111
>gi|195498522|ref|XP_002096559.1| GE25731 [Drosophila yakuba]
gi|194182660|gb|EDW96271.1| GE25731 [Drosophila yakuba]
Length = 424
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 305 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 364
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 365 IDCEGIAKHLKLKTEPLHSPTS 386
>gi|297712744|ref|XP_002832897.1| PREDICTED: homeobox protein HMX1-like [Pongo abelii]
Length = 377
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 3/86 (3%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 235 TRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAE 294
Query: 123 LE-GSLNTPSAGNGKKVAVKILVRES 147
LE SL+ P G + V V +L ES
Sbjct: 295 LEAASLSPP--GAQRLVRVPVLYHES 318
>gi|326920758|ref|XP_003206635.1| PREDICTED: homeobox protein Nkx-2.2a-like [Meleagris gallopavo]
Length = 315
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK+ R FS AQ ELE+RF Q+YLS PER +A+ L LT TQVKIWFQN RYK KR
Sbjct: 87 KKKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLSLTPTQVKIWFQNHRYKMKRA 146
Query: 119 QLQLLEGSLNTPSAGNGKKVA--VKILVRESHPYGS 152
+ + ++V V +L+R+ P S
Sbjct: 147 RSEGPGSPPPPRPPALLRRVVMPVPVLLRDGEPCRS 182
>gi|74210507|dbj|BAE23632.1| unnamed protein product [Mus musculus]
Length = 188
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 67 ALEETPQSGGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 126
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 127 SEVQVKIWFQNRRAKWKR 144
>gi|444722474|gb|ELW63166.1| Glucosamine 6-phosphate N-acetyltransferase [Tupaia chinensis]
Length = 437
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 13/98 (13%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ ELE+RF Q+YLS PER +A+ L+LT TQVKIWFQN RYK KR
Sbjct: 82 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKRA 141
Query: 119 QLQLLEGSLNTP----------SAGNGKKVAVKILVRE 146
+ G+ P + G ++V V +L R+
Sbjct: 142 R---APGAAEPPDLATSAELHAAPGLLRRVVVPVLARD 176
>gi|297669787|ref|XP_002813071.1| PREDICTED: homeobox protein GBX-2 [Pongo abelii]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|198429111|ref|XP_002127499.1| PREDICTED: transcription factor protein [Ciona intestinalis]
Length = 456
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKK +R FS Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++
Sbjct: 179 GRKKHTRPTFSGQQIFALEKTFEQSKYLAGPERARLAYSLAMTESQVKVWFQNRRTKWRK 238
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
+ + T ++++K+ RE
Sbjct: 239 RHA----AEMATAKKRQDGEISLKVKERE 263
>gi|74200840|dbj|BAE24788.1| unnamed protein product [Mus musculus]
Length = 260
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 139 ALEETPQSGGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 198
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 199 SEVQVKIWFQNRRAKWKR 216
>gi|195396503|ref|XP_002056871.1| GJ16761 [Drosophila virilis]
gi|194146638|gb|EDW62357.1| GJ16761 [Drosophila virilis]
Length = 281
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 141 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLSLSETQVKTWYQNRRTKW 200
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 201 KRQNQLRL 208
>gi|194899474|ref|XP_001979284.1| GG24587 [Drosophila erecta]
gi|190650987|gb|EDV48242.1| GG24587 [Drosophila erecta]
Length = 415
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 301 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 360
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 361 IDCEGIAKHLKLKSEPLHSPTS 382
>gi|195446794|ref|XP_002070926.1| GK25513 [Drosophila willistoni]
gi|194167011|gb|EDW81912.1| GK25513 [Drosophila willistoni]
Length = 254
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 114 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKW 173
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 174 KRQNQLRL 181
>gi|344273397|ref|XP_003408508.1| PREDICTED: homeobox protein Nkx-2.8-like [Loxodonta africana]
Length = 237
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Query: 45 SNLPGLAQSQPP--------TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKS 96
++LP +Q Q P + ++K+ R FS AQ ELE+RF Q+YLS PER +A+
Sbjct: 62 TSLPDSSQRQSPRPASPGSDSEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARL 121
Query: 97 LKLTETQVKIWFQNRRYKTKR 117
L+LT TQVKIWFQN RYK KR
Sbjct: 122 LRLTPTQVKIWFQNHRYKLKR 142
>gi|281371502|ref|NP_446160.1| gastrulation brain homeobox 2 [Rattus norvegicus]
gi|149037649|gb|EDL92080.1| gastrulation brain homeobox 2 [Rattus norvegicus]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|57105432|ref|XP_543300.1| PREDICTED: homeobox protein GBX-2 [Canis lupus familiaris]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|195344428|ref|XP_002038789.1| tin [Drosophila sechellia]
gi|194133810|gb|EDW55326.1| tin [Drosophila sechellia]
Length = 415
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 301 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 360
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 361 IDCEGIAKHLKLKSEPLDSPTS 382
>gi|662847|gb|AAA65185.1| homeobox protein [Mus musculus]
gi|1096657|prf||2112239A Gbx-2 gene
Length = 339
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 227 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 286
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 287 QNRRAKWKR 295
>gi|109101578|ref|XP_001082998.1| PREDICTED: homeobox protein GBX-2 [Macaca mulatta]
gi|114584053|ref|XP_526072.2| PREDICTED: homeobox protein GBX-2 [Pan troglodytes]
gi|332256845|ref|XP_003277528.1| PREDICTED: homeobox protein GBX-2 [Nomascus leucogenys]
gi|402889761|ref|XP_003908171.1| PREDICTED: homeobox protein GBX-2 [Papio anubis]
gi|426339002|ref|XP_004033454.1| PREDICTED: homeobox protein GBX-2 [Gorilla gorilla gorilla]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|45593144|ref|NP_001476.2| homeobox protein GBX-2 [Homo sapiens]
gi|12644308|sp|P52951.3|GBX2_HUMAN RecName: Full=Homeobox protein GBX-2; AltName: Full=Gastrulation
and brain-specific homeobox protein 2
gi|5106978|gb|AAD39907.1|AF118452_1 homeobox protein GBX2 [Homo sapiens]
gi|62702316|gb|AAX93240.1| unknown [Homo sapiens]
gi|119591490|gb|EAW71084.1| gastrulation brain homeobox 2 [Homo sapiens]
gi|187950653|gb|AAI37450.1| Gastrulation brain homeobox 2 [Homo sapiens]
gi|187952617|gb|AAI37449.1| Gastrulation brain homeobox 2 [Homo sapiens]
gi|208966344|dbj|BAG73186.1| gastrulation brain homeobox 2 [synthetic construct]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|410897249|ref|XP_003962111.1| PREDICTED: uncharacterized protein LOC101063334 [Takifugu rubripes]
Length = 318
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+ +R R AF+ Q+ ELE +F KYLS P+R +VA SL LTETQVKIWFQNRR K KR
Sbjct: 167 GKCRRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKR 226
Query: 118 KQLQLLEGSLNTP 130
+ + +LN+P
Sbjct: 227 SRKSKEQEALNSP 239
>gi|311273306|ref|XP_003133803.1| PREDICTED: homeobox protein GBX-2 [Sus scrofa]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|300798543|ref|NP_001179074.1| homeobox protein GBX-2 [Bos taurus]
gi|296488808|tpg|DAA30921.1| TPA: gastrulation brain homeobox 2-like [Bos taurus]
Length = 349
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 237 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 296
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 297 QNRRAKWKR 305
>gi|296205942|ref|XP_002749994.1| PREDICTED: homeobox protein GBX-2 [Callithrix jacchus]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|195048680|ref|XP_001992575.1| GH24130 [Drosophila grimshawi]
gi|193893416|gb|EDV92282.1| GH24130 [Drosophila grimshawi]
Length = 281
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 142 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKW 201
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 202 KRQNQLRL 209
>gi|2623152|gb|AAB86406.1| homeobox protein Nkx2.6 [Mus musculus]
Length = 260
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK-RK 118
+++SR FS AQV LE+RF Q+YL+ PER +A +L+LT TQVKIWFQNRRYK+K ++
Sbjct: 61 QRKSRVLFSQAQVLALERRFKQQRYLTAPEREHLASALQLTSTQVKIWFQNRRYKSKSQR 120
Query: 119 QLQLLE 124
Q Q LE
Sbjct: 121 QDQNLE 126
>gi|395851469|ref|XP_003798276.1| PREDICTED: homeobox protein GBX-2 [Otolemur garnettii]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|6753952|ref|NP_034392.1| homeobox protein GBX-2 [Mus musculus]
gi|1351127|sp|P48031.1|GBX2_MOUSE RecName: Full=Homeobox protein GBX-2; AltName: Full=Gastrulation
and brain-specific homeobox protein 2; AltName:
Full=Stimulated by retinoic acid gene 7 protein
gi|755767|emb|CAA88737.1| Stra7 [Mus musculus]
gi|3676057|gb|AAC61877.1| gastrulation-brain-homeobox-2 [Mus musculus]
gi|109734223|gb|AAI16966.1| Gastrulation brain homeobox 2 [Mus musculus]
gi|111307299|gb|AAI20493.1| Gastrulation brain homeobox 2 [Mus musculus]
gi|148708152|gb|EDL40099.1| gastrulation brain homeobox 2 [Mus musculus]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|440900316|gb|ELR51479.1| Homeobox protein GBX-2, partial [Bos grunniens mutus]
Length = 174
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 53 ALEETPPSGGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 112
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 113 SEVQVKIWFQNRRAKWKR 130
>gi|426215111|ref|XP_004001821.1| PREDICTED: homeobox protein GBX-2 [Ovis aries]
Length = 349
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 237 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 296
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 297 QNRRAKWKR 305
>gi|147901462|ref|NP_001091639.1| brain-specific homeobox protein homolog [Homo sapiens]
gi|156630463|sp|Q3C1V8.2|BSH_HUMAN RecName: Full=Brain-specific homeobox protein homolog
Length = 233
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 10/108 (9%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R FS +Q+ LEKRF Q+YLS PER ++A +L L+ETQVK WFQNRR K K++
Sbjct: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPA 166
L S + P A +G + E P GS+ + +L PA
Sbjct: 169 ----LRKSQDEPKAPDGPESP------EGSPRGSEAATAAEARLSLPA 206
>gi|161077784|ref|NP_572815.3| CG11085 [Drosophila melanogaster]
gi|66571260|gb|AAY51595.1| IP01054p [Drosophila melanogaster]
gi|158031802|gb|AAF48182.4| CG11085 [Drosophila melanogaster]
gi|220953298|gb|ACL89192.1| CG11085-PA [synthetic construct]
Length = 295
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 156 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKW 215
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 216 KRQNQLRL 223
>gi|386783933|gb|AFJ24861.1| hmx-1 [Schmidtea mediterranea]
Length = 262
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS QV++LE F+ ++YLS ER+ +A +L+LTETQVKIWFQNRR K KR+
Sbjct: 99 RKKKTRTVFSRNQVFQLESTFDMKRYLSSSERSSLAHALQLTETQVKIWFQNRRNKWKRQ 158
>gi|348577341|ref|XP_003474443.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-2-like [Cavia
porcellus]
Length = 373
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 261 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 320
Query: 109 QNRRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
QNRR K KR + PS K+ V I V S
Sbjct: 321 QNRRAKWKRVKAGNANSKTGEPS--RNPKIVVPIPVHVS 357
>gi|4558046|pdb|1NK2|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES
gi|4558614|pdb|1NK3|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, MINIMIZED AVERAGE
Structure
gi|157834136|pdb|1VND|A Chain A, VndNK-2 Protein (Homeodomain), Nmr
Length = 77
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYKTKR
Sbjct: 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67
Query: 119 Q 119
Q
Sbjct: 68 Q 68
>gi|431912226|gb|ELK14363.1| Homeobox protein GBX-2 [Pteropus alecto]
Length = 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 236 GTAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 295
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 296 QNRRAKWKR 304
>gi|410901026|ref|XP_003963997.1| PREDICTED: homeobox protein HMX2-like [Takifugu rubripes]
gi|410930960|ref|XP_003978865.1| PREDICTED: homeobox protein HMX2-like [Takifugu rubripes]
Length = 273
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A V + ++ R+
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRD 234
>gi|198450638|ref|XP_001358064.2| GA20667 [Drosophila pseudoobscura pseudoobscura]
gi|198131123|gb|EAL27201.2| GA20667 [Drosophila pseudoobscura pseudoobscura]
Length = 423
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 310 KRKPRVLFSQAQVLELECRFRLKKYLTGSEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 369
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 370 IDCEGIAKHLKLKAEPLHSPTS 391
>gi|357614146|gb|EHJ68935.1| hypothetical protein KGM_11243 [Danaus plexippus]
Length = 268
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 8/83 (9%)
Query: 43 ALSNLPGLAQSQPPTGR--------KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVA 94
L P +A+ Q + K++ R FS QV+ LE RF AQKYL+ PER +A
Sbjct: 90 TLPKYPAMARKQTKQCKPDRKERNVKRKPRILFSQTQVHALEVRFIAQKYLTAPEREQLA 149
Query: 95 KSLKLTETQVKIWFQNRRYKTKR 117
K+L L+ TQVKIWFQNRRYK+KR
Sbjct: 150 KTLNLSPTQVKIWFQNRRYKSKR 172
>gi|195166210|ref|XP_002023928.1| GL27335 [Drosophila persimilis]
gi|194106088|gb|EDW28131.1| GL27335 [Drosophila persimilis]
Length = 423
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 310 KRKPRVLFSQAQVLELECRFRLKKYLTGSEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 369
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 370 IDCEGIAKHLKLKAEPLHSPTS 391
>gi|124013676|gb|ABM88107.1| GBX2 [Macaca nemestrina]
Length = 173
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 52 ALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 111
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 112 SEVQVKIWFQNRRAKWKR 129
>gi|121483994|gb|ABM54315.1| GBX2 [Pan paniscus]
gi|122053982|gb|ABM65993.1| GBX2 [Ateles geoffroyi]
gi|124111246|gb|ABM92016.1| GBX2 [Pan troglodytes]
Length = 173
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 52 ALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 111
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 112 SEVQVKIWFQNRRAKWKR 129
>gi|195478007|ref|XP_002100374.1| GE17019 [Drosophila yakuba]
gi|194187898|gb|EDX01482.1| GE17019 [Drosophila yakuba]
Length = 276
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 137 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKW 196
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 197 KRQNQLRL 204
>gi|194763969|ref|XP_001964104.1| GF21379 [Drosophila ananassae]
gi|190619029|gb|EDV34553.1| GF21379 [Drosophila ananassae]
Length = 313
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 173 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKW 232
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 233 KRQNQLRL 240
>gi|23308657|ref|NP_694496.1| homeobox protein GBX-2 [Danio rerio]
gi|19912276|dbj|BAB88556.1| transcription factor Gbx2 [Danio rerio]
gi|37590815|gb|AAH59413.1| Gastrulation brain homeo box 2 [Danio rerio]
Length = 342
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQNRR K K
Sbjct: 238 TGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK 297
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
R + + PS K+ V I V S
Sbjct: 298 RVKAGNVNSKTGEPS--RNPKIVVPIPVHVS 326
>gi|432903181|ref|XP_004077123.1| PREDICTED: homeobox protein HMX2 [Oryzias latipes]
Length = 275
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 151 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 210
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A V + ++ R+
Sbjct: 211 SAELEAA-NMAHASAQTLVGMPLVFRD 236
>gi|120974769|gb|ABM46732.1| GBX2 [Gorilla gorilla]
Length = 173
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 52 ALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 111
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 112 SEVQVKIWFQNRRAKWKR 129
>gi|25990724|gb|AAN76664.1|AF422807_1 Gbx2 [Danio rerio]
Length = 342
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQNRR K K
Sbjct: 238 TGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK 297
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
R + + PS K+ V I V S
Sbjct: 298 RVKAGNVNSKTGEPS--RNPKIVVPIPVHVS 326
>gi|47213210|emb|CAF95326.1| unnamed protein product [Tetraodon nigroviridis]
Length = 229
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKK +R FS Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++
Sbjct: 148 GRKKHTRPTFSGHQIFTLEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 207
Query: 118 K 118
K
Sbjct: 208 K 208
>gi|158286995|ref|XP_309065.4| AGAP005281-PA [Anopheles gambiae str. PEST]
gi|157019801|gb|EAA04807.5| AGAP005281-PA [Anopheles gambiae str. PEST]
Length = 602
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ER ++AK L +TETQVKIWFQNRR K K+
Sbjct: 381 RKKKARTTFTGRQIFELEKQFEVKKYLSSNERTEMAKLLNVTETQVKIWFQNRRTKWKK- 439
Query: 119 QLQLLEGSLNTPSAGNGKKV 138
Q GS P+ G +
Sbjct: 440 --QDTAGSGEVPATSGGHAI 457
>gi|13507110|gb|AAK28445.1|AF288762_1 transcription factor Gbx2 [Danio rerio]
Length = 341
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQNRR K K
Sbjct: 237 TGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK 296
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
R + + PS K+ V I V S
Sbjct: 297 RVKAGNVNSKTGEPS--RNPKIVVPIPVHVS 325
>gi|431908251|gb|ELK11851.1| Mitotic checkpoint protein BUB3 [Pteropus alecto]
Length = 626
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|156363431|ref|XP_001626047.1| predicted protein [Nematostella vectensis]
gi|156212909|gb|EDO33947.1| predicted protein [Nematostella vectensis]
Length = 90
Score = 81.3 bits (199), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ +Q+YELE+RF Q+YLS PER + + + LT TQVKIWFQN RYK K+
Sbjct: 1 KKRKRRILFTKSQIYELERRFRYQRYLSAPEREQLGRMINLTPTQVKIWFQNHRYKHKK- 59
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESH 148
Q EG P + + V V +L+RE
Sbjct: 60 --QASEGEYKEPRSIFPRTVPVPVLIREGQ 87
>gi|391347917|ref|XP_003748200.1| PREDICTED: uncharacterized protein LOC100906611 [Metaseiulus
occidentalis]
Length = 281
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ERA++AK L +TETQVKIWFQNRR K K++
Sbjct: 41 RKKKARTTFTGRQIFELEKQFELKKYLSSSERAEMAKLLNVTETQVKIWFQNRRTKWKKQ 100
>gi|194895837|ref|XP_001978355.1| GG17730 [Drosophila erecta]
gi|190650004|gb|EDV47282.1| GG17730 [Drosophila erecta]
Length = 272
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 134 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKW 193
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 194 KRQNQLRL 201
>gi|444708244|gb|ELW49336.1| Homeobox protein Nkx-2.3 [Tupaia chinensis]
Length = 328
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 52 QSQPPTGRKKRS-RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+S+ P R +R R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQN
Sbjct: 93 ESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQN 152
Query: 111 RR 112
RR
Sbjct: 153 RR 154
>gi|328702962|ref|XP_003242054.1| PREDICTED: homeobox protein koza-like [Acyrthosiphon pisum]
Length = 258
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
GRK +R R AF+HAQ+ LE++F +QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 73 CGRKVRRRRTAFTHAQLAYLERKFRSQKYLSVADRSDVAEALNLSETQVKTWYQNRRTKW 132
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 133 KRQNQLRL 140
>gi|195053902|ref|XP_001993865.1| GH22021 [Drosophila grimshawi]
gi|193895735|gb|EDV94601.1| GH22021 [Drosophila grimshawi]
Length = 451
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 9/84 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 343 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 402
Query: 118 -------KQLQLLEGSLNTPSAGN 134
K L++ +L +P++ +
Sbjct: 403 IDGEGYVKHLKMKPETLQSPTSAS 426
>gi|70570365|dbj|BAE06586.1| transcription factor protein [Ciona intestinalis]
Length = 347
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
GRKK +R FS Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++
Sbjct: 70 GRKKHTRPTFSGQQIFALEKTFEQSKYLAGPERARLAYSLAMTESQVKVWFQNRRTKWRK 129
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKILVRE 146
+ + T ++++K+ RE
Sbjct: 130 RHA----AEMATAKKRQDGEISLKVKERE 154
>gi|344257113|gb|EGW13217.1| Homeobox protein GBX-2 [Cricetulus griseus]
Length = 222
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 101 ALEETPQSGGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 160
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 161 SEVQVKIWFQNRRAKWKR 178
>gi|351699036|gb|EHB01955.1| Homeobox protein GBX-2 [Heterocephalus glaber]
Length = 177
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 56 ALEETPPNGGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 115
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 116 SEVQVKIWFQNRRAKWKR 133
>gi|351713638|gb|EHB16557.1| Homeobox protein Nkx-2.3 [Heterocephalus glaber]
Length = 270
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
+++ R FS AQV+ELE+RF Q+YLS PER +A SLKLT TQVKIWFQNRR
Sbjct: 145 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRR 197
>gi|443705253|gb|ELU01908.1| hypothetical protein CAPTEDRAFT_151262 [Capitella teleta]
Length = 272
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P+G+ +R R AF+ Q+ ELEK F+++KYLS ER+ +A L L+E QVKIWFQNRR K
Sbjct: 149 PSGKTRRRRTAFTSEQLLELEKEFHSKKYLSLTERSQIAHQLNLSEVQVKIWFQNRRAKW 208
Query: 116 KRKQLQLLEGSLNTPSAG---NGKKVAVKILV 144
KR + ++ G + G N K+ V I V
Sbjct: 209 KRVKAGVVHGRHGSSLHGDNPNKPKIVVPIPV 240
>gi|324513822|gb|ADY45661.1| Homeobox protein HMX1 [Ascaris suum]
Length = 442
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS QV +LE F+ ++YLS ERA +A +L+LTETQVKIWFQNRR K KR+
Sbjct: 276 RKKKTRTVFSRQQVSQLEMTFDMKRYLSSQERAHLASTLRLTETQVKIWFQNRRNKWKRQ 335
Query: 119 QLQLLEGS 126
+ ++ S
Sbjct: 336 AVTDIDAS 343
>gi|195446054|ref|XP_002070606.1| GK12153 [Drosophila willistoni]
gi|194166691|gb|EDW81592.1| GK12153 [Drosophila willistoni]
Length = 788
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ER ++AK L +TETQVKIWFQNRR K K++
Sbjct: 425 RKKKARTTFTGRQIFELEKQFEVKKYLSSSERTEMAKLLNVTETQVKIWFQNRRTKWKKQ 484
>gi|195352674|ref|XP_002042836.1| GM11573 [Drosophila sechellia]
gi|194126883|gb|EDW48926.1| GM11573 [Drosophila sechellia]
Length = 272
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 133 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKW 192
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 193 KRQNQLRL 200
>gi|410916007|ref|XP_003971478.1| PREDICTED: homeobox protein Nkx-2.2a-like [Takifugu rubripes]
Length = 235
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 59/101 (58%), Gaps = 19/101 (18%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
+Q GRK+R FS AQ +ELE+RF Q+YLS PER +A ++LT QVKIWFQN R
Sbjct: 93 AQKSRGRKRR--VLFSKAQTFELERRFRQQRYLSAPEREHLAGLIRLTPNQVKIWFQNHR 150
Query: 113 YKTKRKQ-------LQLLEGSLNTPSAGNGKKVAVKILVRE 146
YK KR + LQLL + VA+ ILVRE
Sbjct: 151 YKMKRARGGQNLDALQLLP----------PRSVAIPILVRE 181
>gi|308512457|ref|XP_003118411.1| CRE-MLS-2 protein [Caenorhabditis remanei]
gi|308239057|gb|EFO83009.1| CRE-MLS-2 protein [Caenorhabditis remanei]
Length = 332
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 48/66 (72%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S P RKK++R FS QV +LE F+ ++YLS ER+++A+ L LTETQVKIWFQNRR
Sbjct: 192 SDPNQSRKKKTRTVFSRTQVSQLEMMFDLKRYLSSQERSNLAQKLHLTETQVKIWFQNRR 251
Query: 113 YKTKRK 118
K KR+
Sbjct: 252 NKFKRQ 257
>gi|157133818|ref|XP_001656292.1| hypothetical protein AaeL_AAEL012881 [Aedes aegypti]
gi|108870695|gb|EAT34920.1| AAEL012881-PA [Aedes aegypti]
Length = 223
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 58 GRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W+QNRR K K
Sbjct: 95 GRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALNLSETQVKTWYQNRRTKWK 154
Query: 117 RK-QLQL 122
R+ QL+L
Sbjct: 155 RQNQLRL 161
>gi|118344030|ref|NP_001071839.1| transcription factor protein [Ciona intestinalis]
gi|70571378|dbj|BAE06734.1| transcription factor protein [Ciona intestinalis]
Length = 476
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP +KK+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K
Sbjct: 359 PP--KKKKPRTSFSRIQICELEKRFHRQKYLASSERAALAKSLKMTDAQVKTWFQNRRTK 416
Query: 115 TKRKQLQLLEG 125
+R+ + E
Sbjct: 417 WRRQTTEEREA 427
>gi|354502959|ref|XP_003513549.1| PREDICTED: homeobox protein GBX-2-like [Cricetulus griseus]
Length = 295
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 43 ALSNLP---GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL 99
AL P G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL
Sbjct: 174 ALEETPQSGGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 233
Query: 100 TETQVKIWFQNRRYKTKR 117
+E QVKIWFQNRR K KR
Sbjct: 234 SEVQVKIWFQNRRAKWKR 251
>gi|124054263|gb|ABM89339.1| GBX2 [Pongo pygmaeus]
Length = 173
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 61 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 120
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 121 QNRRAKWKR 129
>gi|334331431|ref|XP_001372895.2| PREDICTED: hypothetical protein LOC100020362 [Monodelphis
domestica]
Length = 297
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P KK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K
Sbjct: 168 PQSSKKKTRTIFSKSQVFQLEATFDVKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKL 227
Query: 116 KRKQLQLLEGSLNT 129
KR+ +G + T
Sbjct: 228 KRQLAAEPDGPVGT 241
>gi|312384373|gb|EFR29114.1| hypothetical protein AND_02195 [Anopheles darlingi]
Length = 462
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R FS Q+ LEKRF AQ+YLS PER ++A +L L+ETQVK WFQNRR K K K
Sbjct: 115 RRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELATALGLSETQVKTWFQNRRMKHK-K 173
Query: 119 QLQLLE 124
QL+ E
Sbjct: 174 QLRRRE 179
>gi|195110741|ref|XP_001999938.1| GI24810 [Drosophila mojavensis]
gi|193916532|gb|EDW15399.1| GI24810 [Drosophila mojavensis]
Length = 787
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ER ++AK L +TETQVKIWFQNRR K K++
Sbjct: 418 RKKKARTTFTGRQIFELEKQFEIKKYLSSSERTEMAKLLNVTETQVKIWFQNRRTKWKKQ 477
>gi|70569017|dbj|BAE06335.1| transcription factor protein [Ciona intestinalis]
Length = 370
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R F+ Q+ LE+RF +QKYLS PER D+A +L+LTETQVK WFQNRR K K K
Sbjct: 244 RRRKARTVFTDQQLSGLERRFESQKYLSTPERVDLANALELTETQVKTWFQNRRMKFK-K 302
Query: 119 QLQLLEGSLNT-PSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYP 177
Q++ +G T S VA + S+ ++ P+PS N LY P
Sbjct: 303 QVRCGKGDDGTQESTDEDSDVACSRTCAITETEKSNDF--EMADIVEPSPSRCN-LYNRP 359
>gi|297687561|ref|XP_002821280.1| PREDICTED: homeobox protein HMX2 [Pongo abelii]
Length = 273
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V++ ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVSMPLVFRDS 235
>gi|402875983|ref|XP_003901766.1| PREDICTED: homeobox protein Nkx-2.8 [Papio anubis]
Length = 405
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ ELE+RF Q+YLS PER +A L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASVLRLTPTQVKIWFQNHRYKLKRA 142
Query: 119 Q 119
+
Sbjct: 143 R 143
>gi|348501546|ref|XP_003438330.1| PREDICTED: homeobox protein HMX2-like [Oreochromis niloticus]
Length = 273
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A V + ++ R+
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRD 234
>gi|198418239|ref|XP_002123513.1| PREDICTED: transcription factor protein [Ciona intestinalis]
Length = 429
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Query: 46 NLPGLAQSQPPTG--RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQ 103
N P L Q G R++++R F+ Q+ LE+RF +QKYLS PER D+A +L+LTETQ
Sbjct: 288 NGPMLHQDSIVMGQSRRRKARTVFTDQQLSGLERRFESQKYLSTPERVDLANALELTETQ 347
Query: 104 VKIWFQNRRYKTKRKQLQLLEG 125
VK WFQNRR K K KQ++ +G
Sbjct: 348 VKTWFQNRRMKFK-KQVRCGKG 368
>gi|195391576|ref|XP_002054436.1| GJ24455 [Drosophila virilis]
gi|194152522|gb|EDW67956.1| GJ24455 [Drosophila virilis]
Length = 758
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ER ++AK L +TETQVKIWFQNRR K K++
Sbjct: 403 RKKKARTTFTGRQIFELEKQFEVKKYLSSSERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 462
>gi|344281588|ref|XP_003412560.1| PREDICTED: homeobox protein Nkx-6.3-like [Loxodonta africana]
Length = 263
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK +R F+ Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++K
Sbjct: 138 KKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKK 197
Query: 119 QLQLLEGSLNTPSAGNGKKVA 139
LE S +TP A G A
Sbjct: 198 --SALEPSSSTPRAPGGTGAA 216
>gi|395853388|ref|XP_003799194.1| PREDICTED: homeobox protein HMX1 [Otolemur garnettii]
Length = 348
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 206 TRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAE 265
Query: 123 LEGSLNTPSAGNGKKVAVKILVRES 147
LE + +P G + V V +L ES
Sbjct: 266 LEAASLSPP-GAQRLVRVPVLYHES 289
>gi|198452832|ref|XP_001358961.2| GA21136 [Drosophila pseudoobscura pseudoobscura]
gi|198132097|gb|EAL28104.2| GA21136 [Drosophila pseudoobscura pseudoobscura]
Length = 761
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ER ++AK L +TETQVKIWFQNRR K K++
Sbjct: 403 RKKKARTTFTGRQIFELEKQFEVKKYLSSSERTEMAKLLIVTETQVKIWFQNRRTKWKKQ 462
>gi|431907340|gb|ELK11313.1| Homeobox protein Nkx-2.8 [Pteropus alecto]
Length = 198
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ ELE+RF Q+YLS PER +A+ L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKRA 142
Query: 119 QL 120
++
Sbjct: 143 RV 144
>gi|70608170|ref|NP_005510.1| homeobox protein HMX2 [Homo sapiens]
gi|152032526|sp|A2RU54.1|HMX2_HUMAN RecName: Full=Homeobox protein HMX2; AltName: Full=Homeobox protein
H6 family member 2
gi|119569673|gb|EAW49288.1| homeobox (H6 family) 2 [Homo sapiens]
gi|124376338|gb|AAI32759.1| H6 family homeobox 2 [Homo sapiens]
gi|187952521|gb|AAI37140.1| H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V++ ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVSMPLVFRDS 235
>gi|395842653|ref|XP_003794129.1| PREDICTED: homeobox protein HMX2 [Otolemur garnettii]
Length = 273
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|301616817|ref|XP_002937849.1| PREDICTED: homeobox protein HMX2-like [Xenopus (Silurana)
tropicalis]
Length = 252
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 129 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 188
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A V + ++ R+
Sbjct: 189 SAELEAA-NMAHASAQTLVGMPLVFRD 214
>gi|426366471|ref|XP_004050281.1| PREDICTED: homeobox protein HMX2 [Gorilla gorilla gorilla]
Length = 273
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V++ ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVSMPLVFRDS 235
>gi|403259332|ref|XP_003922171.1| PREDICTED: homeobox protein HMX2 [Saimiri boliviensis boliviensis]
Length = 273
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|332838046|ref|XP_522208.3| PREDICTED: brain-specific homeobox protein homolog [Pan
troglodytes]
Length = 233
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R FS +Q+ LEKRF Q+YLS PER ++A +L L+ETQVK WFQNRR K K++
Sbjct: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPA 166
L S + P A G + E P GS+ + +L PA
Sbjct: 169 ----LRKSQDEPKAPEGPESP------EGSPRGSEAATAAEARLSLPA 206
>gi|194740848|ref|XP_001952902.1| GF17487 [Drosophila ananassae]
gi|190625961|gb|EDV41485.1| GF17487 [Drosophila ananassae]
Length = 728
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ER ++AK L +TETQVKIWFQNRR K K++
Sbjct: 376 RKKKARTTFTGRQIFELEKQFEVKKYLSSSERTEMAKLLNVTETQVKIWFQNRRTKWKKQ 435
>gi|158187552|ref|NP_001038836.2| sensory organ homeobox protein SOHo [Danio rerio]
Length = 238
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R FS Q+++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 115 TRTIFSKRQIFQLESTFDMKRYLSSAERACLANSLQLTETQVKIWFQNRRNKLKRQLSTE 174
Query: 123 LEGSLNTPSAGNGKKVAVKILVRESHPYGSDYL 155
LEG N+ GK V + L +E++ G L
Sbjct: 175 LEGP-NSEFGDIGKTVPLPALYKENNLLGRCML 206
>gi|114633187|ref|XP_508091.2| PREDICTED: homeobox protein HMX2 [Pan troglodytes]
Length = 273
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V++ ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVSMPLVFRDS 235
>gi|552094|gb|AAA28619.1| last exon, partial [Drosophila melanogaster]
Length = 150
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 35 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 94
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 95 IDCEGIAKHLKLKSEPLDSPTS 116
>gi|116805350|ref|NP_061815.2| homeobox protein HMX1 [Homo sapiens]
gi|259016250|sp|Q9NP08.2|HMX1_HUMAN RecName: Full=Homeobox protein HMX1; AltName: Full=Homeobox protein
H6
gi|182888289|gb|AAI60031.1| H6 family homeobox 1 [synthetic construct]
Length = 348
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 3/86 (3%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 206 TRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAE 265
Query: 123 LE-GSLNTPSAGNGKKVAVKILVRES 147
LE SL+ P G + V V +L ES
Sbjct: 266 LEAASLSPP--GAQRLVRVPVLYHES 289
>gi|157987309|gb|ABW07816.1| homeobox transcription factor, partial [Danio rerio]
Length = 230
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R FS Q+++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 108 TRTIFSKRQIFQLESTFDMKRYLSSAERACLANSLQLTETQVKIWFQNRRNKLKRQLSTE 167
Query: 123 LEGSLNTPSAGNGKKVAVKILVRESHPYGSDYL 155
LEG N+ GK V + L +E++ G L
Sbjct: 168 LEGP-NSEFGDIGKTVPLPALYKENNLLGRCML 199
>gi|348588231|ref|XP_003479870.1| PREDICTED: homeobox protein HMX2-like [Cavia porcellus]
Length = 273
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|195144504|ref|XP_002013236.1| GL24020 [Drosophila persimilis]
gi|194102179|gb|EDW24222.1| GL24020 [Drosophila persimilis]
Length = 773
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R F+ Q++ELEK+F +KYLS ER ++AK L +TETQVKIWFQNRR K K++
Sbjct: 414 RKKKARTTFTGRQIFELEKQFEVKKYLSSSERTEMAKLLIVTETQVKIWFQNRRTKWKKQ 473
>gi|402881727|ref|XP_003904416.1| PREDICTED: homeobox protein HMX2 [Papio anubis]
Length = 273
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|289063413|ref|NP_001165900.1| H6 family homeobox 1 [Macaca mulatta]
Length = 347
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 205 TRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAE 264
Query: 123 LEGSLNTPSAGNGKKVAVKILVRES 147
LE + +P G + V V +L ES
Sbjct: 265 LEAASLSPP-GAQRLVRVPVLYHES 288
>gi|195154781|ref|XP_002018291.1| GL16839 [Drosophila persimilis]
gi|194114087|gb|EDW36130.1| GL16839 [Drosophila persimilis]
Length = 491
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 52/79 (65%)
Query: 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEG 125
AF+ Q+ ELE+ F+A+KYLS ER+ +A SLKL+E QVKIWFQNRR K KR + L
Sbjct: 329 AFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAGLTSH 388
Query: 126 SLNTPSAGNGKKVAVKILV 144
L + +G K+ V I V
Sbjct: 389 GLGRNGSASGTKIVVPIPV 407
>gi|195110433|ref|XP_001999784.1| GI22889 [Drosophila mojavensis]
gi|193916378|gb|EDW15245.1| GI22889 [Drosophila mojavensis]
Length = 234
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 44 LSNLPGLAQSQ-PPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTE 101
L+NLP ++ PP K KRSR AF+ Q+ ELE+ FN KYL P R +++ L+LTE
Sbjct: 17 LTNLPQSSEFHCPPVASKCKRSRTAFTSHQLLELEREFNENKYLGRPRRIGISQRLQLTE 76
Query: 102 TQVKIWFQNRRYKTKRKQLQLLEGSLNTPSA 132
QVKIWFQNRR K+K++ + L L SA
Sbjct: 77 RQVKIWFQNRRMKSKKQANRQLSSKLFLNSA 107
>gi|296210206|ref|XP_002751872.1| PREDICTED: homeobox protein GBX-1 [Callithrix jacchus]
Length = 362
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 42 AALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTE 101
AA P A P G+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E
Sbjct: 242 AAEEGAPVAAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSE 301
Query: 102 TQVKIWFQNRRYKTKR 117
QVKIWFQNRR K KR
Sbjct: 302 VQVKIWFQNRRAKWKR 317
>gi|441599791|ref|XP_003255110.2| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX2 [Nomascus
leucogenys]
Length = 273
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|340723371|ref|XP_003400063.1| PREDICTED: homeobox protein MSX-1-like [Bombus terrestris]
Length = 331
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKR R AF+ AQ+ LE F KYLS +R ++KSLKLTETQ+KIWFQNRR K KRK
Sbjct: 171 RKKRPRTAFTAAQIKSLEAEFERNKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRK 230
>gi|143347008|gb|ABO93209.1| Nk2.2 [Platynereis dumerilii]
Length = 200
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGSLN-TP 130
+YELE+RF Q+YLS PER +A ++LT TQVKIWFQN RYK KR + + LN P
Sbjct: 2 LYELERRFRQQRYLSAPEREHLASIIRLTPTQVKIWFQNHRYKLKRSRQERGLQDLNPLP 61
Query: 131 SAGNGKKVAVKILVRESHPYGSDYLYGT 158
S ++VAV +LVR+ P + GT
Sbjct: 62 SP---RRVAVPVLVRDGKPCQPMSMNGT 86
>gi|302563699|ref|NP_001181230.1| homeobox protein HMX2 [Macaca mulatta]
gi|297302009|ref|XP_002805890.1| PREDICTED: homeobox protein HMX2-like isoform 2 [Macaca mulatta]
gi|355562850|gb|EHH19444.1| hypothetical protein EGK_20148 [Macaca mulatta]
Length = 273
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|125809459|ref|XP_001361128.1| GA14073 [Drosophila pseudoobscura pseudoobscura]
gi|122121193|sp|Q28ZA9.1|UNPG_DROPS RecName: Full=Homeobox protein unplugged
gi|54636302|gb|EAL25705.1| GA14073 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 52/79 (65%)
Query: 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEG 125
AF+ Q+ ELE+ F+A+KYLS ER+ +A SLKL+E QVKIWFQNRR K KR + L
Sbjct: 329 AFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAGLTSH 388
Query: 126 SLNTPSAGNGKKVAVKILV 144
L + +G K+ V I V
Sbjct: 389 GLGRNGSASGTKIVVPIPV 407
>gi|351694611|gb|EHA97529.1| Homeobox protein HMX2 [Heterocephalus glaber]
Length = 273
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|30142687|ref|NP_839976.1| brain-specific homeobox protein homolog [Mus musculus]
gi|51701282|sp|Q810B3.1|BSH_MOUSE RecName: Full=Brain-specific homeobox protein homolog
gi|29569149|gb|AAO84023.1| brain-specific homeodomain protein [Mus musculus]
gi|74355059|gb|AAI04387.1| Brain specific homeobox [Mus musculus]
gi|74355499|gb|AAI04388.1| Brain specific homeobox [Mus musculus]
Length = 232
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R FS +Q+ LEKRF Q+YLS PER ++A +L L+ETQVK WFQNRR K K++
Sbjct: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
Query: 119 QLQLLEGSLNTPSAGNG 135
L S + P A +G
Sbjct: 169 ----LRKSQDEPKAADG 181
>gi|194745238|ref|XP_001955095.1| GF18599 [Drosophila ananassae]
gi|190628132|gb|EDV43656.1| GF18599 [Drosophila ananassae]
Length = 402
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 290 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKR 347
>gi|426248396|ref|XP_004017949.1| PREDICTED: LOW QUALITY PROTEIN: thyroid transcription factor 1-like
[Ovis aries]
Length = 405
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 40/52 (76%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
FS AQVYELE+RF Q+YLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 203 FSQAQVYELERRFKQQRYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 254
>gi|300797676|ref|NP_001179544.1| homeobox protein HMX2 [Bos taurus]
gi|296472549|tpg|DAA14664.1| TPA: H6 family homeobox 2-like [Bos taurus]
Length = 274
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 150 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 209
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 210 SAELEAA-NMAHASAQTLVGMPLVFRDS 236
>gi|194041606|ref|XP_001928099.1| PREDICTED: homeobox protein HMX2-like [Sus scrofa]
Length = 273
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|70608207|ref|NP_666110.1| homeobox protein HMX2 [Mus musculus]
gi|27735196|sp|P43687.3|HMX2_MOUSE RecName: Full=Homeobox protein HMX2; AltName: Full=Homeobox protein
Nkx-5.2
gi|19483944|gb|AAH23402.1| Hmx2 protein [Mus musculus]
gi|74209721|dbj|BAE23589.1| unnamed protein product [Mus musculus]
gi|148685771|gb|EDL17718.1| H6 homeobox 2 [Mus musculus]
Length = 273
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|270001577|gb|EEZ98024.1| hypothetical protein TcasGA2_TC000424 [Tribolium castaneum]
Length = 190
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Query: 53 SQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
S+ GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W+QNR
Sbjct: 53 SEAAKGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALNLSETQVKTWYQNR 112
Query: 112 RYKTKRK-QLQL 122
R K KR+ QL+L
Sbjct: 113 RTKWKRQNQLRL 124
>gi|300795458|ref|NP_001178924.1| brain-specific homeobox protein homolog [Rattus norvegicus]
Length = 232
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R FS +Q+ LEKRF Q+YLS PER ++A +L L+ETQVK WFQNRR K K++
Sbjct: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
Query: 119 QLQLLEGSLNTPSAGNG 135
L S + P A +G
Sbjct: 169 ----LRKSQDEPKAADG 181
>gi|157821011|ref|NP_001099773.1| homeobox protein HMX2 [Rattus norvegicus]
gi|149061281|gb|EDM11704.1| similar to Hmx2 protein (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 273
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|296221410|ref|XP_002756720.1| PREDICTED: homeobox protein HMX2 [Callithrix jacchus]
Length = 273
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|60678588|gb|AAX33664.1| Dbuz\zen2-PA [Drosophila buzzatii]
Length = 297
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 9/101 (8%)
Query: 18 NITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEK 77
NI N++ SY +++ ++P+P+ + P + KRSR AFS Q+ ELE+
Sbjct: 3 NIYNSSESYMMIDNMQ--INVPQPSDFV-------TPPVVSKCKRSRTAFSSHQLLELER 53
Query: 78 RFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
FN KYL P R +A+ L+LTE QVKIWFQNRR K+K++
Sbjct: 54 EFNENKYLGRPRRIGIAQRLQLTERQVKIWFQNRRMKSKKQ 94
>gi|395543113|ref|XP_003773467.1| PREDICTED: uncharacterized protein LOC100928318 [Sarcophilus
harrisii]
Length = 342
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P KK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K
Sbjct: 213 PQSSKKKTRTIFSKSQVFQLEATFDVKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKL 272
Query: 116 KRKQLQLLEGSLNT 129
KR+ G + T
Sbjct: 273 KRQLAAEPHGPVGT 286
>gi|311260868|ref|XP_001925375.2| PREDICTED: homeobox protein Nkx-2.8-like [Sus scrofa]
Length = 241
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R FS AQ ELE+RF Q+YLS PER +A+ L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKRA 142
Query: 119 Q 119
+
Sbjct: 143 R 143
>gi|301621865|ref|XP_002940266.1| PREDICTED: homeobox protein vent1B-like [Xenopus (Silurana)
tropicalis]
Length = 228
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 5/87 (5%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R FS +Q+++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 84 TRTIFSKSQIFQLESTFDMKRYLSSAERACLANSLQLTETQVKIWFQNRRNKLKRQMSAE 143
Query: 123 LEGSL---NTPSAGNGKKVAVKILVRE 146
L+GS+ T A +G VA+ + +E
Sbjct: 144 LDGSVPVEQTEDANHG--VALPVFYKE 168
>gi|195113859|ref|XP_002001485.1| GI21950 [Drosophila mojavensis]
gi|193918079|gb|EDW16946.1| GI21950 [Drosophila mojavensis]
Length = 449
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 337 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKR 394
>gi|391336860|ref|XP_003742796.1| PREDICTED: homeobox protein slou-like [Metaseiulus occidentalis]
Length = 379
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+ +R+R AF++ Q+ LE +F +YLS ER ++A SL+LTETQVKIWFQNRR K K+
Sbjct: 233 GKPRRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLRLTETQVKIWFQNRRTKWKK 292
Query: 118 KQLQLLEGSLNTPSAGNGKKVAVKI---LVRESHPYGSDYLYGTQ 159
+ + S TP++ + + + L S + LYG+Q
Sbjct: 293 QNPGMDANSPTTPASSSAPLTSSPLTAPLTANSQLAAAALLYGSQ 337
>gi|11967767|emb|CAC19387.1| NK7 subclass protein [Discocelis tigrina]
Length = 132
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 42 AALSNLPGLAQSQPPT----GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL 97
+A G A S+ T RKK+SR FS Q++ELE++F +KYLS ERA++A L
Sbjct: 15 SAFKRKRGRADSEEKTFNALERKKKSRTTFSGRQIFELERQFEQKKYLSSGERAEMANQL 74
Query: 98 KLTETQVKIWFQNRRYKTKRKQ 119
+TETQVKIWFQNRR K K+++
Sbjct: 75 NVTETQVKIWFQNRRTKWKKQE 96
>gi|47550735|ref|NP_999892.1| brain-specific homeobox protein homolog [Danio rerio]
gi|51701276|sp|Q6R3Q6.1|BSH_DANRE RecName: Full=Brain-specific homeobox protein homolog
gi|41059081|gb|AAR99056.1| brain-specific homeodomain protein [Danio rerio]
gi|190336722|gb|AAI62183.1| Brain specific homeobox [Danio rerio]
gi|190336748|gb|AAI62209.1| Brain specific homeobox [Danio rerio]
Length = 227
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 5/88 (5%)
Query: 47 LPGLAQSQPPT----GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTET 102
+P L Q P R++++R FS +Q+ LEKRF Q+YLS PER ++A +L L+ET
Sbjct: 88 MPALFQHHPELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSET 147
Query: 103 QVKIWFQNRRYKTKRKQLQLLEGSLNTP 130
QVK WFQNRR K K KQL+ + TP
Sbjct: 148 QVKTWFQNRRMKHK-KQLRKTQDDQKTP 174
>gi|344296067|ref|XP_003419731.1| PREDICTED: homeobox protein HMX2-like [Loxodonta africana]
Length = 273
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|73998968|ref|XP_544055.2| PREDICTED: homeobox protein HMX2 [Canis lupus familiaris]
Length = 273
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|195133470|ref|XP_002011162.1| GI16386 [Drosophila mojavensis]
gi|193907137|gb|EDW06004.1| GI16386 [Drosophila mojavensis]
Length = 185
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 57 TGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
+GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA++L L+ETQVK W+QNRR K
Sbjct: 44 SGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLSLSETQVKTWYQNRRTKW 103
Query: 116 KRK-QLQL 122
KR+ QL+L
Sbjct: 104 KRQNQLRL 111
>gi|112419219|gb|AAI22455.1| H6 family homeobox 4 [Danio rerio]
Length = 152
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122
+R FS Q+++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 29 TRTIFSKRQIFQLESTFDMKRYLSSAERACLANSLQLTETQVKIWFQNRRNKLKRQLSTE 88
Query: 123 LEGSLNTPSAGNGKKVAVKILVRESHPYGSDYL 155
LEG N+ GK V + L +E++ G L
Sbjct: 89 LEGP-NSEFGDIGKTVPLPALYKENNLLGRCML 120
>gi|355693228|gb|EHH27831.1| hypothetical protein EGK_18125 [Macaca mulatta]
Length = 236
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 43/59 (72%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++K+ R FS AQ ELE+RF Q+YLS PER +A L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASVLRLTPTQVKIWFQNHRYKLKR 141
>gi|296214835|ref|XP_002753874.1| PREDICTED: homeobox protein Nkx-2.8 [Callithrix jacchus]
Length = 241
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 43/59 (72%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++K+ R FS AQ ELE+RF Q+YLS PER +A L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKR 141
>gi|291412760|ref|XP_002722641.1| PREDICTED: H6 family homeobox 2 [Oryctolagus cuniculus]
Length = 273
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 149 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 209 SAELEAA-NMAHASAQTLVGMPLVFRDS 235
>gi|410900372|ref|XP_003963670.1| PREDICTED: homeobox protein Nkx-6.2-like [Takifugu rubripes]
Length = 279
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+KK SR FS Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++
Sbjct: 150 GKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 209
Query: 118 KQ 119
K
Sbjct: 210 KH 211
>gi|242004411|ref|XP_002423083.1| Homeobox protein Hox-A2, putative [Pediculus humanus corporis]
gi|212506014|gb|EEB10345.1| Homeobox protein Hox-A2, putative [Pediculus humanus corporis]
Length = 285
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 62/111 (55%), Gaps = 20/111 (18%)
Query: 47 LPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
+PG S G+ +R R AF+ Q+ ELEK+F KYLS P+R +VA SL LTETQVKI
Sbjct: 16 VPG---SHALLGKTRRPRTAFTSQQLLELEKQFKHNKYLSRPKRFEVATSLMLTETQVKI 72
Query: 107 WFQNRRYKTKRKQLQLLEG------------SLNTP-----SAGNGKKVAV 140
WFQNRR K KR + E SLN+P ++G GK +
Sbjct: 73 WFQNRRMKWKRSKKAQQEAKQKEECSQTKSKSLNSPNITTTTSGGGKSCLI 123
>gi|444725667|gb|ELW66227.1| T-cell leukemia homeobox protein 3 [Tupaia chinensis]
Length = 291
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRIKWRRQ 224
>gi|47199053|emb|CAF88397.1| unnamed protein product [Tetraodon nigroviridis]
Length = 71
Score = 80.5 bits (197), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL LTETQVKIWFQNRR K KR+
Sbjct: 1 RKKKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 60
Query: 119 QLQLLEGS 126
LE +
Sbjct: 61 LAAELEAA 68
>gi|350403347|ref|XP_003486774.1| PREDICTED: homeobox protein MSX-1-like [Bombus impatiens]
Length = 331
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKR R AF+ AQ+ LE F KYLS +R ++KSLKLTETQ+KIWFQNRR K KRK
Sbjct: 171 RKKRPRTAFTAAQIKSLEAEFERNKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRK 230
>gi|91077574|ref|XP_972824.1| PREDICTED: similar to CG11085 CG11085-PA [Tribolium castaneum]
Length = 171
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Query: 53 SQPPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
S+ GRK +R R AF+HAQ+ LE++F QKYLS +R+DVA +L L+ETQVK W+QNR
Sbjct: 34 SEAAKGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALNLSETQVKTWYQNR 93
Query: 112 RYKTKRK-QLQL 122
R K KR+ QL+L
Sbjct: 94 RTKWKRQNQLRL 105
>gi|332248255|ref|XP_003273280.1| PREDICTED: LOW QUALITY PROTEIN: T-cell leukemia homeobox protein 3
[Nomascus leucogenys]
Length = 291
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRH 224
Query: 119 QLQ 121
++
Sbjct: 225 TVE 227
>gi|149633402|ref|XP_001509419.1| PREDICTED: homeobox protein GBX-2-like [Ornithorhynchus anatinus]
Length = 344
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQNRR K K
Sbjct: 240 TGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK 299
Query: 117 R 117
R
Sbjct: 300 R 300
>gi|440903087|gb|ELR53792.1| Ventral anterior homeobox 1 [Bos grunniens mutus]
Length = 248
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 15/115 (13%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R KR+R +F+ Q+Y LE F +Y+ G ER ++A+ L L+ETQVK+WFQNRR K K+
Sbjct: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPAPSMANSL 173
Q GK ++ +V E+ S QG+LL P PS+ S+
Sbjct: 159 Q---------------GKDSELRSVVSETAATCSVLRLLEQGRLLLPVPSLLGSV 198
>gi|301780166|ref|XP_002925500.1| PREDICTED: homeobox protein Nkx-2.8-like [Ailuropoda melanoleuca]
Length = 175
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 44/59 (74%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++K+ R FS AQ ELE+RF Q+YLS PER +A+ L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKR 141
>gi|9438792|gb|AAB35877.2| NK-related homeobox gene [Mus sp.]
Length = 286
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 162 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 221
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRES 147
LE + N A V + ++ R+S
Sbjct: 222 SAELEAA-NMAHASAQTLVGMPLVFRDS 248
>gi|410913781|ref|XP_003970367.1| PREDICTED: LOW QUALITY PROTEIN: T-cell leukemia homeobox protein
3-like [Takifugu rubripes]
Length = 283
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP ++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K
Sbjct: 164 PP--KRKKPRTSFSRVQICELEKRFHRQKYLASAERAXLAKSLKMTDAQVKTWFQNRRTK 221
Query: 115 TKRK 118
+R+
Sbjct: 222 WRRQ 225
>gi|170044234|ref|XP_001849759.1| homeobox protein nk-2 [Culex quinquefasciatus]
gi|167867470|gb|EDS30853.1| homeobox protein nk-2 [Culex quinquefasciatus]
Length = 292
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ Q YELE+RF +YLS PER +A + L+ TQVKIWFQN RYKTKR
Sbjct: 132 KKRKRRILFNKTQTYELERRFKQTRYLSAPEREHLASMINLSPTQVKIWFQNHRYKTKRA 191
Query: 119 QLQLLEGSLNTPSAGNG--------KKVAVKILVRESHP 149
Q + + G K+ V +LVR+ P
Sbjct: 192 QTEKMPGFAGHQLQQQQQHQVGTSPKRFNVPVLVRDGKP 230
>gi|148233906|ref|NP_001079215.1| T-cell leukemia homeobox 3 [Xenopus laevis]
gi|10185812|gb|AAG14452.1|AF283693_1 homeobox protein XHox11L2 [Xenopus laevis]
Length = 292
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP ++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K
Sbjct: 163 PP--KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTK 220
Query: 115 TKRK 118
+R+
Sbjct: 221 WRRQ 224
>gi|119586259|gb|EAW65855.1| hCG19725 [Homo sapiens]
Length = 201
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 43/59 (72%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++K+ R FS AQ ELE+RF Q+YLS PER +A L+LT TQVKIWFQN RYK KR
Sbjct: 45 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKR 103
>gi|159162908|pdb|1QRY|A Chain A, Homeobox Protein Vnd (Ventral Nervous System Defective
Protein)
Length = 80
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+K++ R F+ AQ YELE+RF Q+YLS PER + ++LT TQVKIWFQN RYKTKR
Sbjct: 11 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLTSLIRLTPTQVKIWFQNHRYKTKRA 70
Query: 119 Q 119
Q
Sbjct: 71 Q 71
>gi|158300107|ref|XP_320094.4| AGAP009302-PA [Anopheles gambiae str. PEST]
gi|157013842|gb|EAA15156.4| AGAP009302-PA [Anopheles gambiae str. PEST]
Length = 334
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R FS Q+ LEKRF AQ+YLS PER ++A +L L+ETQVK WFQNRR K K K
Sbjct: 264 RRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHK-K 322
Query: 119 QLQLLE 124
QL+ E
Sbjct: 323 QLRRRE 328
>gi|170054312|ref|XP_001863070.1| brain-specific homeobox protein [Culex quinquefasciatus]
gi|167874590|gb|EDS37973.1| brain-specific homeobox protein [Culex quinquefasciatus]
Length = 370
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R FS Q+ LEKRF AQ+YLS PER ++A +L L+ETQVK WFQNRR K K K
Sbjct: 177 RRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHK-K 235
Query: 119 QLQLLE 124
QL+ E
Sbjct: 236 QLRRRE 241
>gi|47221693|emb|CAG10165.1| unnamed protein product [Tetraodon nigroviridis]
Length = 267
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G+KK SR FS Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++
Sbjct: 144 GKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 203
Query: 118 KQ 119
K
Sbjct: 204 KH 205
>gi|301759391|ref|XP_002915555.1| PREDICTED: homeobox protein GBX-1-like, partial [Ailuropoda
melanoleuca]
Length = 333
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P G+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQNRR K
Sbjct: 227 PGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKW 286
Query: 116 KR 117
KR
Sbjct: 287 KR 288
>gi|281339855|gb|EFB15439.1| hypothetical protein PANDA_003545 [Ailuropoda melanoleuca]
Length = 325
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P G+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQNRR K
Sbjct: 219 PGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKW 278
Query: 116 KR 117
KR
Sbjct: 279 KR 280
>gi|45384198|ref|NP_990399.1| homeobox protein GBX-2 [Gallus gallus]
gi|6016108|sp|O42230.1|GBX2_CHICK RecName: Full=Homeobox protein GBX-2; AltName: Full=Gastrulation
and brain-specific homeobox protein 2
gi|2554937|gb|AAB82710.1| homeobox protein [Gallus gallus]
Length = 340
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQNRR K K
Sbjct: 236 TGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK 295
Query: 117 RKQLQLLEGSLNTPSAGNGKKVAVKILVRES 147
R + PS K+ V I V S
Sbjct: 296 RVKAGNASSKAGEPS--RNPKIVVPIPVHVS 324
>gi|432107212|gb|ELK32626.1| Homeobox protein GBX-2 [Myotis davidii]
Length = 267
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G + S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 155 GASGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 214
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 215 QNRRAKWKR 223
>gi|350594608|ref|XP_003483932.1| PREDICTED: homeobox protein Nkx-6.3-like [Sus scrofa]
Length = 261
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK +R F+ Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++K
Sbjct: 138 KKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKK 197
Query: 119 QLQLLEGSLNTPSAGNG 135
LE S +TP A G
Sbjct: 198 --SALEPSSSTPRAPGG 212
>gi|195569169|ref|XP_002102583.1| GD19422 [Drosophila simulans]
gi|194198510|gb|EDX12086.1| GD19422 [Drosophila simulans]
Length = 116
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR-- 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 2 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKRGD 61
Query: 118 -------KQLQLLEGSLNTPSA 132
K L+L L++P++
Sbjct: 62 IDCEGIAKHLKLKSEPLDSPTS 83
>gi|395838373|ref|XP_003792090.1| PREDICTED: homeobox protein GBX-1 [Otolemur garnettii]
Length = 357
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P G+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQNRR K
Sbjct: 251 PGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKW 310
Query: 116 KR 117
KR
Sbjct: 311 KR 312
>gi|56718237|gb|AAW24454.1| homeodomain protein Mnx [Oikopleura dioica]
Length = 217
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 38 LPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL 97
L P + GL Q G+ +R R AFS Q+ ELE++F KYLS P+R +VA L
Sbjct: 98 LANPFQIGQYQGLLQQ--TGGKSRRPRTAFSSQQLLELERQFKMNKYLSRPKRFEVATML 155
Query: 98 KLTETQVKIWFQNRRYKTKR 117
LTETQVKIWFQNRR K KR
Sbjct: 156 CLTETQVKIWFQNRRMKWKR 175
>gi|6016289|sp|O55144.1|TLX3_MOUSE RecName: Full=T-cell leukemia homeobox protein 3; AltName:
Full=Homeobox TLX-3; AltName: Full=Homeobox protein
Hox-11L2; AltName: Full=Respiratory neuron homeobox
protein
gi|2959932|emb|CAA11551.1| HOX11L2 [Mus musculus]
Length = 291
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|383857811|ref|XP_003704397.1| PREDICTED: uncharacterized protein LOC100875048 [Megachile
rotundata]
Length = 330
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKKR R AF+ AQ+ LE F KYLS +R ++KSLKLTETQ+KIWFQNRR K KRK
Sbjct: 170 RKKRPRTAFTAAQIKSLEAEFERNKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRK 229
>gi|195399676|ref|XP_002058445.1| GJ14310 [Drosophila virilis]
gi|194142005|gb|EDW58413.1| GJ14310 [Drosophila virilis]
Length = 446
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
K++ R FS AQV ELE RF +KYL+G ER +A+ L L+ TQVKIWFQNRRYK+KR
Sbjct: 328 KRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKR 385
>gi|62859509|ref|NP_001015902.1| T-cell leukemia homeobox 3 [Xenopus (Silurana) tropicalis]
gi|89268076|emb|CAJ83135.1| T-cell leukemia, homeobox 3 [Xenopus (Silurana) tropicalis]
Length = 292
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 166 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 225
>gi|402881871|ref|XP_003904483.1| PREDICTED: uncharacterized protein LOC101017162 [Papio anubis]
Length = 586
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P G+KK SR FS Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K
Sbjct: 453 PXGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKW 512
Query: 116 KRKQ 119
+++
Sbjct: 513 RKRH 516
>gi|291414062|ref|XP_002723283.1| PREDICTED: gastrulation brain homeobox 2-like [Oryctolagus
cuniculus]
Length = 344
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWFQNRR K K
Sbjct: 240 TGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK 299
Query: 117 R 117
R
Sbjct: 300 R 300
>gi|47214061|emb|CAG00719.1| unnamed protein product [Tetraodon nigroviridis]
Length = 69
Score = 80.1 bits (196), Expect = 9e-13, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
RKK++R FS +QV++LE F+ ++YLS ERA +A SL+LTETQVKIWFQNRR K KR+
Sbjct: 1 RKKKTRTVFSRSQVFQLESTFDLKRYLSSSERAGLAASLQLTETQVKIWFQNRRNKWKRQ 60
>gi|47215667|emb|CAG04751.1| unnamed protein product [Tetraodon nigroviridis]
Length = 282
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP ++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K
Sbjct: 164 PP--KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTK 221
Query: 115 TKRK 118
+R+
Sbjct: 222 WRRQ 225
>gi|397479335|ref|XP_003810979.1| PREDICTED: LOW QUALITY PROTEIN: T-cell leukemia homeobox protein 3
[Pan paniscus]
Length = 291
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|157822463|ref|NP_001102925.1| homeobox protein Nkx-6.3 [Rattus norvegicus]
gi|149057784|gb|EDM09027.1| rCG42989 [Rattus norvegicus]
Length = 262
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK +R F+ Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++K
Sbjct: 139 KKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKK 198
Query: 119 QLQLLEGSLNTPSAGNG 135
LE S +TP A G
Sbjct: 199 --SALEPSSSTPRAPGG 213
>gi|410969726|ref|XP_004001457.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-2 [Felis
catus]
Length = 277
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G A S TG+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKIWF
Sbjct: 165 GAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 224
Query: 109 QNRRYKTKR 117
QNRR K KR
Sbjct: 225 QNRRAKWKR 233
>gi|395817065|ref|XP_003781996.1| PREDICTED: T-cell leukemia homeobox protein 3 [Otolemur garnettii]
Length = 291
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|345799373|ref|XP_546241.3| PREDICTED: T-cell leukemia homeobox protein 3 [Canis lupus
familiaris]
Length = 291
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|344265259|ref|XP_003404702.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Loxodonta
africana]
Length = 291
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|147904242|ref|NP_001090355.1| NK6 homeobox 2 [Xenopus laevis]
gi|114107871|gb|AAI23230.1| Nkx6-2 protein [Xenopus laevis]
Length = 281
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 54/89 (60%), Gaps = 17/89 (19%)
Query: 48 PGLAQSQP--------PT---------GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPER 90
PG+ QS P PT G+KK SR FS Q++ LEK F KYL+GPER
Sbjct: 125 PGVMQSSPWRDPRLACPTQAGLMLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPER 184
Query: 91 ADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
A +A SL +TE+QVK+WFQNRR K +++
Sbjct: 185 ARLAYSLGMTESQVKVWFQNRRTKWRKRH 213
>gi|2959928|emb|CAA11550.1| HOX11L2 [Homo sapiens]
Length = 291
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|334311449|ref|XP_003339620.1| PREDICTED: LOW QUALITY PROTEIN: t-cell leukemia homeobox protein
3-like [Monodelphis domestica]
Length = 290
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 164 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 223
>gi|50355978|ref|NP_066305.2| T-cell leukemia homeobox protein 3 [Homo sapiens]
gi|109079745|ref|XP_001095250.1| PREDICTED: t-cell leukemia homeobox protein 3 [Macaca mulatta]
gi|291387812|ref|XP_002710422.1| PREDICTED: T-cell leukemia homeobox 3 [Oryctolagus cuniculus]
gi|297676637|ref|XP_002816233.1| PREDICTED: T-cell leukemia homeobox protein 3 [Pongo abelii]
gi|402873390|ref|XP_003900560.1| PREDICTED: T-cell leukemia homeobox protein 3 [Papio anubis]
gi|115502468|sp|O43711.3|TLX3_HUMAN RecName: Full=T-cell leukemia homeobox protein 3; AltName:
Full=Homeobox protein Hox-11L2
gi|16878171|gb|AAH17291.1| T-cell leukemia homeobox 3 [Homo sapiens]
gi|119581856|gb|EAW61452.1| T-cell leukemia homeobox 3 [Homo sapiens]
gi|123984469|gb|ABM83580.1| T-cell leukemia homeobox 3 [synthetic construct]
gi|123998435|gb|ABM86819.1| T-cell leukemia homeobox 3 [synthetic construct]
gi|123998992|gb|ABM87084.1| T-cell leukemia homeobox 3 [synthetic construct]
Length = 291
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|301614690|ref|XP_002936815.1| PREDICTED: t-cell leukemia homeobox protein 1-like isoform 2
[Xenopus (Silurana) tropicalis]
Length = 299
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP +KK+ R +F+ Q+ ELEKRF+ QKYL+ ERA +AK+LK+T+ QVK WFQNRR K
Sbjct: 167 PP--KKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTK 224
Query: 115 TKRK 118
+R+
Sbjct: 225 WRRQ 228
>gi|363729608|ref|XP_003640677.1| PREDICTED: homeobox protein GBX-1 [Gallus gallus]
Length = 326
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 4/71 (5%)
Query: 51 AQSQPP----TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106
A QPP G+ +R R AF+ Q+ ELEK F+ +KYLS ER+ +A +LKL+E QVKI
Sbjct: 211 AAEQPPPGSGAGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKI 270
Query: 107 WFQNRRYKTKR 117
WFQNRR K KR
Sbjct: 271 WFQNRRAKWKR 281
>gi|133901932|ref|NP_001076742.1| Protein CEH-22, isoform a [Caenorhabditis elegans]
gi|3876539|emb|CAA98272.1| Protein CEH-22, isoform a [Caenorhabditis elegans]
Length = 346
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 41/53 (77%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
F+ AQ YELE+RF +QKYLS PER +A ++LT TQVKIWFQN RYKTK+
Sbjct: 196 FTKAQTYELERRFRSQKYLSAPEREALAMQIRLTPTQVKIWFQNHRYKTKKSH 248
>gi|198278517|ref|NP_083278.1| homeobox protein Nkx-6.3 [Mus musculus]
gi|123794601|sp|Q3UHX8.1|NKX63_MOUSE RecName: Full=Homeobox protein Nkx-6.3
gi|74151216|dbj|BAE27728.1| unnamed protein product [Mus musculus]
gi|148700922|gb|EDL32869.1| mCG13087 [Mus musculus]
gi|187954347|gb|AAI40995.1| NK6 homeobox 3 [Mus musculus]
Length = 262
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK +R F+ Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++K
Sbjct: 139 KKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKK 198
Query: 119 QLQLLEGSLNTPSAGNG 135
LE S +TP A G
Sbjct: 199 --SALEPSSSTPRAPGG 213
>gi|126273001|ref|XP_001367646.1| PREDICTED: homeobox protein HMX2-like [Monodelphis domestica]
Length = 277
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
KK++R FS +QVY+LE F+ ++YLS ERA +A SL+LTETQVK WFQNRR K KR+
Sbjct: 153 KKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 212
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRE 146
LE + N A V + ++ R+
Sbjct: 213 SAELEAA-NMAHASAQTLVGMPLVFRD 238
>gi|68510382|gb|AAY98485.1| NKX6-3 [Mus musculus]
Length = 262
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK +R F+ Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++K
Sbjct: 139 KKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKK 198
Query: 119 QLQLLEGSLNTPSAGNG 135
LE S +TP A G
Sbjct: 199 --SALEPSSSTPRAPGG 213
>gi|300793790|ref|NP_001180120.1| T-cell leukemia homeobox protein 3 [Bos taurus]
gi|194687059|ref|XP_001789338.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Bos taurus]
Length = 291
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|300793706|ref|NP_001179092.1| homeobox protein Nkx-2.8 [Bos taurus]
gi|296475370|tpg|DAA17485.1| TPA: NK2 homeobox 8-like [Bos taurus]
Length = 237
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 44/59 (74%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++K+ R FS AQ ELE+RF Q+YLS PER +A+ L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKR 141
>gi|335304101|ref|XP_003134109.2| PREDICTED: T-cell leukemia homeobox protein 3-like [Sus scrofa]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|296475890|tpg|DAA18005.1| TPA: T-cell leukemia homeobox 3-like [Bos taurus]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|254826778|ref|NP_064300.2| T-cell leukemia homeobox protein 3 [Mus musculus]
gi|293339992|ref|XP_001064411.2| PREDICTED: T-cell leukemia homeobox protein 3 [Rattus norvegicus]
gi|293351408|ref|XP_573065.2| PREDICTED: T-cell leukemia homeobox protein 3 [Rattus norvegicus]
gi|348574959|ref|XP_003473257.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Cavia
porcellus]
gi|74202606|dbj|BAE24864.1| unnamed protein product [Mus musculus]
gi|148691796|gb|EDL23743.1| T-cell leukemia, homeobox 3 [Mus musculus]
gi|149052252|gb|EDM04069.1| similar to HOX11L2 (predicted), isoform CRA_a [Rattus norvegicus]
gi|219518746|gb|AAI45632.1| T-cell leukemia, homeobox 3 [Mus musculus]
gi|223461240|gb|AAI41309.1| Tlx3 protein [Mus musculus]
gi|431918137|gb|ELK17365.1| T-cell leukemia homeobox protein 3 [Pteropus alecto]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|301775013|ref|XP_002922930.1| PREDICTED: t-cell leukemia homeobox protein 3-like [Ailuropoda
melanoleuca]
Length = 292
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 166 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 225
>gi|119587942|gb|EAW67538.1| hCG1647980 [Homo sapiens]
Length = 626
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 10/108 (9%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R++++R FS +Q+ LEKRF Q+YLS PER ++A +L L+ETQVK WFQNRR K K++
Sbjct: 383 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 442
Query: 119 QLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLYGTQGKLLPPA 166
L S + P A +G + E P GS+ + +L PA
Sbjct: 443 ----LRKSQDEPKAPDGPESP------EGSPRGSEAATAAEARLSLPA 480
>gi|1170309|sp|P41936.1|HM22_CAEEL RecName: Full=Homeobox protein ceh-22
gi|497684|gb|AAA20840.1| CEH-22 homeoprotein [Caenorhabditis elegans]
gi|497686|gb|AAA20841.1| CEH-22 homeoprotein [Caenorhabditis elegans]
Length = 346
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 41/53 (77%)
Query: 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
F+ AQ YELE+RF +QKYLS PER +A ++LT TQVKIWFQN RYKTK+
Sbjct: 196 FTKAQTYELERRFRSQKYLSAPEREALAMQIRLTPTQVKIWFQNHRYKTKKSH 248
>gi|403290178|ref|XP_003936207.1| PREDICTED: T-cell leukemia homeobox protein 3 [Saimiri boliviensis
boliviensis]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AKSLK+T+ QVK WFQNRR K +R+
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
>gi|195137700|ref|XP_002012587.1| GI13996 [Drosophila mojavensis]
gi|193906491|gb|EDW05358.1| GI13996 [Drosophila mojavensis]
Length = 278
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 44 LSNLPGLAQSQ-PPTGRK-KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTE 101
L NLP ++ PP K KRSR AF+ Q+ ELE+ FN KYL P R +A+ L+LTE
Sbjct: 5 LINLPQSSEFHCPPVASKCKRSRTAFTSHQLLELEREFNENKYLGRPRRIGIAQRLQLTE 64
Query: 102 TQVKIWFQNRRYKTKRK 118
QVKIWFQNRR K+K++
Sbjct: 65 RQVKIWFQNRRMKSKKQ 81
>gi|12858513|dbj|BAB31342.1| unnamed protein product [Mus musculus]
Length = 262
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK +R F+ Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++K
Sbjct: 139 KKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKK 198
Query: 119 QLQLLEGSLNTPSAGNG 135
LE S +TP A G
Sbjct: 199 --SALEPSSSTPRAPGG 213
>gi|432950908|ref|XP_004084668.1| PREDICTED: T-cell leukemia homeobox protein 1-like [Oryzias
latipes]
Length = 323
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
PP ++K+ R +FS Q+ ELEKRF+ QKYL+ ERA +AK+LK+T+ QVK WFQNRR K
Sbjct: 193 PP--KRKKPRTSFSRVQICELEKRFHRQKYLASAERATLAKALKMTDAQVKTWFQNRRTK 250
Query: 115 TKRK 118
+R+
Sbjct: 251 WRRQ 254
>gi|354482360|ref|XP_003503366.1| PREDICTED: homeobox protein Nkx-6.3-like [Cricetulus griseus]
gi|344238925|gb|EGV95028.1| Homeobox protein Nkx-6.3 [Cricetulus griseus]
Length = 262
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KK +R F+ Q++ LEK F KYL+GPERA +A SL +TE+QVK+WFQNRR K ++K
Sbjct: 139 KKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKK 198
Query: 119 QLQLLEGSLNTPSAGNG 135
LE S +TP A G
Sbjct: 199 --SALEPSSSTPRAQGG 213
>gi|440909272|gb|ELR59196.1| Homeobox protein Nkx-2.8, partial [Bos grunniens mutus]
Length = 142
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 44/59 (74%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++K+ R FS AQ ELE+RF Q+YLS PER +A+ L+LT TQVKIWFQN RYK KR
Sbjct: 83 KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKR 141
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.309 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,670,121,760
Number of Sequences: 23463169
Number of extensions: 205722897
Number of successful extensions: 575310
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 17244
Number of HSP's successfully gapped in prelim test: 815
Number of HSP's that attempted gapping in prelim test: 556042
Number of HSP's gapped (non-prelim): 19810
length of query: 274
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 134
effective length of database: 9,074,351,707
effective search space: 1215963128738
effective search space used: 1215963128738
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 76 (33.9 bits)