Query psy526
Match_columns 274
No_of_seqs 304 out of 1515
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:50:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 99.9 2.7E-26 9.1E-31 194.6 0.8 110 10-119 39-158 (164)
2 3l1p_A POU domain, class 5, tr 99.9 5.4E-26 1.8E-30 191.0 -1.0 108 11-118 37-154 (155)
3 1au7_A Protein PIT-1, GHF-1; c 99.9 1.6E-25 5.5E-30 186.4 0.8 107 10-118 29-145 (146)
4 1e3o_C Octamer-binding transcr 99.9 4.1E-24 1.4E-28 180.3 2.9 109 10-118 33-159 (160)
5 3d1n_I POU domain, class 6, tr 99.9 1.7E-24 5.7E-29 181.0 -1.6 106 12-117 32-150 (151)
6 2cue_A Paired box protein PAX6 99.8 6.7E-21 2.3E-25 142.8 9.5 68 58-125 5-72 (80)
7 2dmq_A LIM/homeobox protein LH 99.8 6.7E-21 2.3E-25 142.5 8.4 64 58-121 5-68 (80)
8 2dms_A Homeobox protein OTX2; 99.8 4.3E-21 1.5E-25 143.8 6.3 64 57-120 4-67 (80)
9 2dmt_A Homeobox protein BARH-l 99.8 9.7E-21 3.3E-25 141.9 7.9 63 56-118 13-75 (80)
10 1nk2_P Homeobox protein VND; h 99.8 1.8E-20 6.2E-25 139.4 8.9 67 56-122 5-71 (77)
11 2h1k_A IPF-1, pancreatic and d 99.8 1.3E-20 4.4E-25 135.0 6.9 60 59-118 2-61 (63)
12 2vi6_A Homeobox protein nanog; 99.8 4.2E-21 1.4E-25 137.0 4.1 61 58-118 1-61 (62)
13 2kt0_A Nanog, homeobox protein 99.8 2E-20 6.8E-25 141.2 8.0 65 55-119 17-81 (84)
14 1zq3_P PRD-4, homeotic bicoid 99.8 1.7E-20 5.7E-25 136.4 6.7 63 60-122 2-64 (68)
15 2da3_A Alpha-fetoprotein enhan 99.8 1.8E-20 6.3E-25 139.9 7.1 63 56-118 13-75 (80)
16 2dmu_A Homeobox protein goosec 99.8 2.4E-20 8.2E-25 136.2 7.5 61 58-118 5-65 (70)
17 2cra_A Homeobox protein HOX-B1 99.8 1.4E-20 4.6E-25 137.6 6.1 62 57-118 4-65 (70)
18 1wh5_A ZF-HD homeobox family p 99.8 1.4E-20 4.8E-25 141.3 6.3 61 57-117 14-78 (80)
19 2hdd_A Protein (engrailed home 99.8 1.6E-20 5.3E-25 133.6 6.1 59 59-117 2-60 (61)
20 1puf_A HOX-1.7, homeobox prote 99.8 6.2E-20 2.1E-24 136.5 9.4 66 57-122 10-75 (77)
21 2da1_A Alpha-fetoprotein enhan 99.8 2.9E-20 1E-24 135.6 6.6 62 57-118 4-65 (70)
22 1yz8_P Pituitary homeobox 2; D 99.8 1.2E-20 4.2E-25 137.1 4.5 63 58-120 1-63 (68)
23 3a01_A Homeodomain-containing 99.8 3.4E-20 1.2E-24 142.9 7.2 66 56-121 13-78 (93)
24 2da2_A Alpha-fetoprotein enhan 99.8 2.7E-20 9.1E-25 135.8 6.3 62 57-118 4-65 (70)
25 1ig7_A Homeotic protein MSX-1; 99.8 3.9E-20 1.3E-24 130.1 6.9 57 61-117 1-57 (58)
26 2e1o_A Homeobox protein PRH; D 99.8 6E-20 2E-24 134.1 7.9 62 58-119 5-66 (70)
27 1fjl_A Paired protein; DNA-bin 99.8 4.9E-20 1.7E-24 138.3 7.6 64 57-120 15-78 (81)
28 2da4_A Hypothetical protein DK 99.8 3E-20 1E-24 139.1 5.9 62 57-118 5-70 (80)
29 1wh7_A ZF-HD homeobox family p 99.8 2.7E-20 9.3E-25 139.8 5.7 61 56-117 13-78 (80)
30 2djn_A Homeobox protein DLX-5; 99.8 2.7E-20 9.2E-25 136.0 5.5 62 57-118 4-65 (70)
31 1ahd_P Antennapedia protein mu 99.8 4.6E-20 1.6E-24 134.2 6.5 60 60-119 2-61 (68)
32 1bw5_A ISL-1HD, insulin gene e 99.8 3.6E-20 1.2E-24 133.7 5.4 60 59-118 2-61 (66)
33 1b8i_A Ultrabithorax, protein 99.8 4.4E-20 1.5E-24 138.7 6.0 63 57-119 17-79 (81)
34 2l7z_A Homeobox protein HOX-A1 99.8 6.9E-20 2.4E-24 135.0 6.9 61 58-118 5-65 (73)
35 1jgg_A Segmentation protein EV 99.8 6.4E-20 2.2E-24 130.0 6.1 58 61-118 2-59 (60)
36 1ftt_A TTF-1 HD, thyroid trans 99.8 1E-19 3.6E-24 132.2 7.2 60 60-119 2-61 (68)
37 2m0c_A Homeobox protein arista 99.8 1.2E-19 4.1E-24 133.8 7.1 63 56-118 5-67 (75)
38 1akh_A Protein (mating-type pr 99.8 8.1E-20 2.8E-24 129.7 5.2 59 58-116 3-61 (61)
39 2ecc_A Homeobox and leucine zi 99.8 9.3E-20 3.2E-24 135.4 5.5 59 63-121 6-64 (76)
40 3rkq_A Homeobox protein NKX-2. 99.8 1.4E-19 4.9E-24 126.8 6.0 57 60-116 2-58 (58)
41 2cuf_A FLJ21616 protein; homeo 99.8 1.9E-19 6.5E-24 139.1 7.2 65 57-121 4-83 (95)
42 2da6_A Hepatocyte nuclear fact 99.8 5.8E-19 2E-23 137.9 9.8 67 57-123 3-90 (102)
43 2r5y_A Homeotic protein sex co 99.8 2.6E-19 8.7E-24 136.4 7.6 62 57-118 25-86 (88)
44 2k40_A Homeobox expressed in E 99.8 2.2E-19 7.6E-24 129.9 6.3 60 60-119 1-60 (67)
45 1b72_A Protein (homeobox prote 99.8 2.1E-19 7.3E-24 139.3 6.4 63 58-120 32-94 (97)
46 2hi3_A Homeodomain-only protei 99.8 3.9E-19 1.3E-23 130.9 7.4 59 61-119 3-62 (73)
47 1uhs_A HOP, homeodomain only p 99.8 4E-19 1.4E-23 130.4 7.0 59 61-119 2-61 (72)
48 3a02_A Homeobox protein arista 99.8 2E-19 7E-24 127.4 5.2 57 63-119 2-58 (60)
49 3a03_A T-cell leukemia homeobo 99.8 4.5E-19 1.6E-23 124.0 6.3 54 65-118 2-55 (56)
50 1x2n_A Homeobox protein pknox1 99.8 1.1E-18 3.8E-23 128.3 7.7 63 57-119 4-69 (73)
51 3nar_A ZHX1, zinc fingers and 99.8 6.2E-19 2.1E-23 136.5 5.9 64 56-119 21-84 (96)
52 1wi3_A DNA-binding protein SAT 99.8 9.2E-19 3.1E-23 126.4 6.3 60 57-116 4-64 (71)
53 2dmn_A Homeobox protein TGIF2L 99.8 1.3E-18 4.5E-23 131.3 7.4 62 58-119 5-69 (83)
54 2ly9_A Zinc fingers and homeob 99.7 1E-18 3.4E-23 128.8 6.0 61 59-119 5-65 (74)
55 1b72_B Protein (PBX1); homeodo 99.7 5E-19 1.7E-23 134.4 4.3 62 60-121 1-65 (87)
56 2dn0_A Zinc fingers and homeob 99.7 1.1E-18 3.9E-23 129.3 5.9 59 60-118 8-66 (76)
57 1puf_B PRE-B-cell leukemia tra 99.7 1.8E-18 6.2E-23 127.2 6.8 60 60-119 1-63 (73)
58 2da5_A Zinc fingers and homeob 99.7 2.9E-18 9.8E-23 127.0 7.5 58 62-119 9-66 (75)
59 1du6_A PBX1, homeobox protein 99.7 7.6E-19 2.6E-23 125.9 3.9 59 59-117 2-63 (64)
60 1k61_A Mating-type protein alp 99.7 4.2E-18 1.4E-22 120.5 6.2 55 63-117 1-58 (60)
61 1mnm_C Protein (MAT alpha-2 tr 99.7 4.9E-18 1.7E-22 129.0 6.5 60 58-117 25-87 (87)
62 2ecb_A Zinc fingers and homeob 99.7 2.9E-18 9.8E-23 131.2 4.9 54 66-119 17-70 (89)
63 1lfb_A Liver transcription fac 99.7 2E-18 6.7E-23 134.7 2.9 65 56-120 5-90 (99)
64 2dmp_A Zinc fingers and homeob 99.7 1.1E-17 3.9E-22 127.8 6.8 53 67-119 20-72 (89)
65 1le8_B Mating-type protein alp 99.7 9.8E-18 3.4E-22 126.4 5.9 58 61-118 3-63 (83)
66 3nau_A Zinc fingers and homeob 99.7 1.3E-17 4.3E-22 120.3 6.0 52 68-119 12-63 (66)
67 2cqx_A LAG1 longevity assuranc 99.7 3.2E-18 1.1E-22 126.0 2.6 58 61-118 9-67 (72)
68 2e19_A Transcription factor 8; 99.7 2.3E-17 8E-22 118.7 4.4 54 64-117 7-60 (64)
69 2l9r_A Homeobox protein NKX-3. 99.7 3.1E-17 1.1E-21 119.8 4.5 55 65-119 9-63 (69)
70 2d5v_A Hepatocyte nuclear fact 99.7 3.9E-17 1.3E-21 137.8 4.6 63 57-119 94-156 (164)
71 1x2m_A LAG1 longevity assuranc 99.7 4.1E-17 1.4E-21 117.3 3.5 48 70-117 10-58 (64)
72 3k2a_A Homeobox protein MEIS2; 99.6 1.4E-15 4.8E-20 110.2 5.6 56 65-120 3-61 (67)
73 2da7_A Zinc finger homeobox pr 99.6 1.8E-15 6.2E-20 109.8 5.2 46 69-114 14-59 (71)
74 1ic8_A Hepatocyte nuclear fact 99.6 5.7E-16 1.9E-20 134.3 2.6 62 56-117 111-193 (194)
75 2h8r_A Hepatocyte nuclear fact 99.5 1.8E-14 6.3E-19 126.5 5.3 61 55-115 137-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.4 1.5E-13 5E-18 104.8 6.5 58 65-122 10-70 (89)
77 1mh3_A Maltose binding-A1 home 99.3 1.6E-13 5.5E-18 128.6 2.2 57 60-116 365-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 4E-09 1.4E-13 67.3 1.0 23 102-124 1-23 (37)
79 2ys9_A Homeobox and leucine zi 95.4 0.014 4.8E-07 41.9 3.8 39 72-110 18-56 (70)
80 2elh_A CG11849-PA, LD40883P; s 85.2 1.3 4.4E-05 32.1 4.9 46 59-109 15-60 (87)
81 2glo_A Brinker CG9653-PA; prot 83.8 1.5 5.2E-05 29.3 4.4 46 64-110 3-48 (59)
82 3hug_A RNA polymerase sigma fa 83.7 2.1 7.2E-05 31.0 5.5 50 66-120 37-86 (92)
83 1hlv_A CENP-B, major centromer 82.7 2.2 7.5E-05 32.7 5.6 49 63-114 4-52 (131)
84 2o8x_A Probable RNA polymerase 77.8 2.2 7.7E-05 28.7 3.7 48 66-118 15-62 (70)
85 2rgt_A Fusion of LIM/homeobox 75.1 0.045 1.5E-06 45.1 -6.9 31 58-88 134-164 (169)
86 1tc3_C Protein (TC3 transposas 73.6 4.6 0.00016 24.5 4.1 40 66-110 5-44 (51)
87 1p4w_A RCSB; solution structur 72.9 5.9 0.0002 29.6 5.2 46 64-115 32-77 (99)
88 1jko_C HIN recombinase, DNA-in 72.3 1.8 6.2E-05 27.0 1.9 43 67-114 6-48 (52)
89 3c57_A Two component transcrip 70.6 4 0.00014 29.9 3.7 46 65-116 26-71 (95)
90 3mzy_A RNA polymerase sigma-H 70.0 7.5 0.00026 29.9 5.4 49 66-120 109-157 (164)
91 1je8_A Nitrate/nitrite respons 68.9 4.9 0.00017 28.6 3.8 48 64-117 19-66 (82)
92 2lv7_A Calcium-binding protein 67.5 23 0.00078 25.9 7.4 48 62-109 25-79 (100)
93 1fse_A GERE; helix-turn-helix 67.5 5.2 0.00018 27.1 3.6 47 64-116 9-55 (74)
94 1iuf_A Centromere ABP1 protein 67.2 9.2 0.00031 30.2 5.5 50 61-110 6-59 (144)
95 1s7o_A Hypothetical UPF0122 pr 66.2 9.3 0.00032 29.1 5.1 48 66-118 22-69 (113)
96 2p7v_B Sigma-70, RNA polymeras 65.9 4.1 0.00014 27.6 2.8 51 66-117 5-55 (68)
97 1ku3_A Sigma factor SIGA; heli 65.7 9.9 0.00034 26.0 4.8 50 66-116 10-59 (73)
98 1x3u_A Transcriptional regulat 64.2 5.8 0.0002 27.3 3.3 46 66-117 16-61 (79)
99 3ulq_B Transcriptional regulat 63.0 11 0.00037 27.5 4.7 48 62-115 25-72 (90)
100 1xsv_A Hypothetical UPF0122 pr 61.2 15 0.0005 27.9 5.4 49 66-119 25-73 (113)
101 3lph_A Protein REV; helix-loop 61.0 8.1 0.00028 27.5 3.5 37 72-122 18-54 (72)
102 1rp3_A RNA polymerase sigma fa 58.5 9.3 0.00032 31.5 4.2 48 66-118 187-234 (239)
103 2rnj_A Response regulator prot 57.8 5.7 0.0002 28.6 2.4 47 64-116 27-73 (91)
104 1or7_A Sigma-24, RNA polymeras 57.1 12 0.0004 29.9 4.4 47 67-118 141-187 (194)
105 1tty_A Sigma-A, RNA polymerase 56.3 11 0.00036 27.0 3.6 51 66-117 18-68 (87)
106 2jn6_A Protein CGL2762, transp 54.9 14 0.00049 26.6 4.2 43 64-110 3-46 (97)
107 2q24_A Putative TETR family tr 47.2 8.4 0.00029 30.5 2.0 42 70-113 19-60 (194)
108 2jpc_A SSRB; DNA binding prote 46.2 9.8 0.00033 24.8 1.9 41 71-117 3-43 (61)
109 3t72_q RNA polymerase sigma fa 44.9 37 0.0013 25.2 5.2 53 66-119 19-71 (99)
110 2q0o_A Probable transcriptiona 44.8 25 0.00086 29.5 4.7 47 64-116 173-219 (236)
111 2x7l_M HIV REV; nuclear export 44.1 23 0.00078 27.4 3.8 38 72-123 15-52 (115)
112 2x48_A CAG38821; archeal virus 44.1 21 0.00073 22.6 3.3 39 66-109 13-53 (55)
113 1fi6_A EH domain protein REPS1 43.8 20 0.0007 25.4 3.5 44 66-109 2-50 (92)
114 2pmy_A RAS and EF-hand domain- 42.6 17 0.00057 25.5 2.8 46 64-109 18-68 (91)
115 2rn7_A IS629 ORFA; helix, all 41.4 32 0.0011 25.1 4.3 46 64-109 4-52 (108)
116 3i5g_B Myosin regulatory light 41.0 44 0.0015 25.9 5.4 40 63-102 6-50 (153)
117 1l3l_A Transcriptional activat 39.2 35 0.0012 28.6 4.8 47 64-116 171-217 (234)
118 3clo_A Transcriptional regulat 38.8 29 0.00099 29.7 4.2 48 65-118 196-243 (258)
119 2q1z_A RPOE, ECF SIGE; ECF sig 38.3 7.7 0.00026 30.8 0.4 28 91-118 155-182 (184)
120 3bd1_A CRO protein; transcript 37.8 14 0.00047 25.5 1.6 25 90-114 14-38 (79)
121 2xi8_A Putative transcription 37.3 12 0.00042 24.1 1.3 24 90-113 17-40 (66)
122 2hin_A GP39, repressor protein 36.9 18 0.0006 25.5 2.1 29 90-118 13-41 (71)
123 1c07_A Protein (epidermal grow 36.1 26 0.00087 25.1 3.0 43 67-109 4-51 (95)
124 2r1j_L Repressor protein C2; p 36.0 14 0.00047 24.1 1.3 24 90-113 21-44 (68)
125 3c3w_A Two component transcrip 35.7 36 0.0012 27.8 4.2 45 65-115 148-192 (225)
126 1u78_A TC3 transposase, transp 35.4 48 0.0016 24.8 4.6 41 65-110 5-45 (141)
127 2k27_A Paired box protein PAX- 34.6 45 0.0015 26.0 4.5 41 65-110 24-64 (159)
128 1zug_A Phage 434 CRO protein; 34.1 15 0.0005 24.2 1.2 24 90-113 19-42 (71)
129 2cqq_A RSGI RUH-037, DNAJ homo 34.0 71 0.0024 22.3 4.9 42 64-105 8-49 (72)
130 1u78_A TC3 transposase, transp 33.8 59 0.002 24.3 4.9 44 66-113 60-105 (141)
131 3bs3_A Putative DNA-binding pr 33.4 16 0.00055 24.4 1.4 24 90-113 26-49 (76)
132 2k27_A Paired box protein PAX- 33.3 67 0.0023 25.0 5.3 46 65-110 82-134 (159)
133 3dcf_A Transcriptional regulat 32.8 20 0.00069 28.3 2.1 44 69-113 34-77 (218)
134 2qko_A Possible transcriptiona 32.7 22 0.00074 28.5 2.3 47 70-117 32-78 (215)
135 3qp6_A CVIR transcriptional re 32.5 69 0.0024 27.6 5.7 47 64-116 195-241 (265)
136 2ofy_A Putative XRE-family tra 32.2 50 0.0017 22.6 3.9 24 89-112 29-52 (86)
137 3omt_A Uncharacterized protein 31.9 18 0.00061 24.3 1.4 23 90-112 24-46 (73)
138 1irz_A ARR10-B; helix-turn-hel 31.7 77 0.0026 21.9 4.6 58 60-117 3-62 (64)
139 1adr_A P22 C2 repressor; trans 31.5 18 0.0006 24.2 1.3 24 90-113 21-44 (76)
140 3q0w_A HTH-type transcriptiona 31.4 15 0.00053 30.1 1.2 41 72-113 50-90 (236)
141 1a04_A Nitrate/nitrite respons 31.4 46 0.0016 26.6 4.1 46 65-116 153-198 (215)
142 2hxi_A Putative transcriptiona 31.2 31 0.0011 29.0 3.1 51 63-114 25-76 (241)
143 2lfw_A PHYR sigma-like domain; 31.2 21 0.00071 28.0 1.9 47 66-117 93-139 (157)
144 1k78_A Paired box protein PAX5 31.1 1.1E+02 0.0038 23.2 6.3 48 64-111 88-142 (149)
145 2hku_A A putative transcriptio 30.7 19 0.00066 28.8 1.6 42 70-113 24-65 (215)
146 1j7q_A CAVP, calcium vector pr 30.5 65 0.0022 21.6 4.3 37 64-100 5-46 (86)
147 3g7r_A Putative transcriptiona 30.5 24 0.00082 28.5 2.2 44 69-113 38-81 (221)
148 2b5a_A C.BCLI; helix-turn-heli 30.2 19 0.00066 24.1 1.3 23 90-112 26-48 (77)
149 2v57_A TETR family transcripti 29.9 18 0.00062 28.1 1.3 40 71-113 19-58 (190)
150 2pz9_A Putative regulatory pro 29.6 8.8 0.0003 31.4 -0.7 44 70-114 34-77 (226)
151 1r69_A Repressor protein CI; g 29.6 20 0.00067 23.4 1.3 24 90-113 17-40 (69)
152 2cqr_A RSGI RUH-043, DNAJ homo 29.4 1.5E+02 0.005 20.8 6.4 45 62-106 16-61 (73)
153 2kpj_A SOS-response transcript 28.6 21 0.00071 25.4 1.3 24 90-113 25-48 (94)
154 2kvr_A Ubiquitin carboxyl-term 28.5 15 0.00052 28.9 0.6 24 90-113 72-95 (130)
155 1pdn_C Protein (PRD paired); p 28.5 62 0.0021 23.4 4.1 40 66-110 17-56 (128)
156 3kz3_A Repressor protein CI; f 28.3 22 0.00074 24.4 1.4 24 90-113 28-51 (80)
157 3g1o_A Transcriptional regulat 28.1 20 0.00068 29.8 1.3 41 72-113 49-89 (255)
158 2rek_A Putative TETR-family tr 28.0 9.7 0.00033 30.1 -0.7 41 70-112 20-60 (199)
159 2hxo_A Putative TETR-family tr 28.0 42 0.0014 28.0 3.4 54 61-115 10-64 (237)
160 1dtl_A Cardiac troponin C; hel 27.9 79 0.0027 23.5 4.7 48 62-109 7-62 (161)
161 3b7h_A Prophage LP1 protein 11 27.9 22 0.00074 23.9 1.3 23 90-112 23-45 (78)
162 1y7y_A C.AHDI; helix-turn-heli 27.7 23 0.00077 23.4 1.3 23 90-112 29-51 (74)
163 2rae_A Transcriptional regulat 27.1 33 0.0011 26.9 2.5 43 69-112 20-62 (207)
164 2a6c_A Helix-turn-helix motif; 27.1 25 0.00086 24.4 1.5 23 90-112 34-56 (83)
165 1l0o_C Sigma factor; bergerat 26.9 13 0.00046 30.4 0.0 44 67-115 199-242 (243)
166 3kz9_A SMCR; transcriptional r 26.8 32 0.0011 26.7 2.3 43 70-113 21-63 (206)
167 3jsj_A Putative TETR-family tr 26.7 27 0.00091 27.1 1.8 44 69-114 12-55 (190)
168 2qwt_A Transcriptional regulat 26.6 35 0.0012 26.9 2.6 41 70-112 17-57 (196)
169 2wiu_B HTH-type transcriptiona 26.0 30 0.001 23.8 1.8 24 90-113 28-51 (88)
170 3ppb_A Putative TETR family tr 26.0 36 0.0012 26.1 2.5 44 69-113 12-55 (195)
171 3szt_A QCSR, quorum-sensing co 25.9 74 0.0025 26.7 4.6 45 65-115 174-218 (237)
172 3ccy_A Putative TETR-family tr 25.8 49 0.0017 26.0 3.3 42 70-112 18-59 (203)
173 2ktg_A Calmodulin, putative; e 25.8 69 0.0023 21.4 3.7 45 65-109 6-57 (85)
174 3fmy_A HTH-type transcriptiona 25.6 52 0.0018 22.2 3.0 42 65-113 9-50 (73)
175 1pdn_C Protein (PRD paired); p 25.3 64 0.0022 23.4 3.7 45 66-110 75-126 (128)
176 1iq3_A Ralbp1-interacting prot 24.9 31 0.0011 25.7 1.8 46 64-109 13-63 (110)
177 3f1b_A TETR-like transcription 24.6 22 0.00075 27.7 0.9 44 70-114 18-61 (203)
178 2qtq_A Transcriptional regulat 24.6 43 0.0015 26.2 2.7 44 69-113 19-62 (213)
179 3on2_A Probable transcriptiona 24.3 29 0.00099 26.8 1.6 44 69-113 15-58 (199)
180 2k9q_A Uncharacterized protein 24.2 26 0.00089 23.7 1.1 24 90-113 18-41 (77)
181 2oi8_A Putative regulatory pro 24.2 25 0.00086 28.6 1.2 44 69-113 19-62 (216)
182 2ef8_A C.ECOT38IS, putative tr 24.1 29 0.00099 23.6 1.4 24 90-113 26-49 (84)
183 2g7l_A TETR-family transcripti 24.1 32 0.0011 28.9 1.9 55 62-117 14-69 (243)
184 1k78_A Paired box protein PAX5 24.0 82 0.0028 24.0 4.2 41 65-110 31-71 (149)
185 3qrx_A Centrin; calcium-bindin 24.0 81 0.0028 23.7 4.2 49 60-108 15-70 (169)
186 2qib_A TETR-family transcripti 23.8 21 0.00071 29.2 0.6 44 70-114 17-60 (231)
187 3fiw_A Putative TETR-family tr 23.7 29 0.001 28.4 1.6 53 63-116 21-74 (211)
188 3f6w_A XRE-family like protein 23.6 29 0.001 23.7 1.3 24 90-113 30-53 (83)
189 2ict_A Antitoxin HIGA; helix-t 23.5 31 0.0011 24.3 1.5 23 90-112 24-46 (94)
190 1avs_A Troponin C; muscle cont 23.5 84 0.0029 21.3 3.8 45 64-108 11-62 (90)
191 2zcx_A SCO7815, TETR-family tr 23.4 28 0.00094 28.7 1.3 42 71-113 28-69 (231)
192 1etf_B REV peptide; complex (R 23.3 47 0.0016 19.0 1.8 14 109-122 7-20 (26)
193 2lhi_A Calmodulin, serine/thre 23.1 48 0.0016 26.3 2.7 38 64-101 2-44 (176)
194 2opo_A Polcalcin CHE A 3; calc 23.1 69 0.0024 21.5 3.2 44 66-109 4-53 (86)
195 3bdn_A Lambda repressor; repre 23.0 35 0.0012 28.4 1.9 25 89-113 32-56 (236)
196 3rd3_A Probable transcriptiona 22.9 32 0.0011 26.6 1.6 44 69-113 13-56 (197)
197 3fwb_A Cell division control p 22.8 1.2E+02 0.0043 22.3 5.0 47 62-108 12-65 (161)
198 2np5_A Transcriptional regulat 22.8 24 0.00082 28.1 0.8 43 70-113 13-55 (203)
199 3nxc_A HTH-type protein SLMA; 22.8 33 0.0011 26.9 1.7 35 78-113 37-71 (212)
200 2mys_B Myosin; muscle protein, 22.4 1.4E+02 0.0047 22.4 5.2 45 66-110 18-70 (166)
201 1eh2_A EPS15; calcium binding, 22.1 1.2E+02 0.004 22.3 4.6 44 65-108 7-54 (106)
202 3aqt_A Bacterial regulatory pr 22.1 18 0.0006 30.0 -0.2 44 70-114 50-93 (245)
203 3gzi_A Transcriptional regulat 22.1 36 0.0012 26.9 1.8 43 70-113 21-63 (218)
204 1pb6_A Hypothetical transcript 22.0 22 0.00076 28.0 0.4 44 70-114 22-65 (212)
205 2fq4_A Transcriptional regulat 21.9 31 0.0011 27.1 1.3 45 70-115 16-60 (192)
206 3dew_A Transcriptional regulat 21.7 28 0.00096 27.0 1.0 47 69-116 11-57 (206)
207 2eqr_A N-COR1, N-COR, nuclear 21.4 1.3E+02 0.0045 19.9 4.3 50 59-112 7-58 (61)
208 3t76_A VANU, transcriptional r 21.3 34 0.0012 24.6 1.3 25 89-113 39-63 (88)
209 2ovk_B RLC, myosin regulatory 21.2 1E+02 0.0035 22.8 4.2 46 63-108 6-58 (153)
210 2dg8_A Putative TETR-family tr 21.1 33 0.0011 26.9 1.3 44 69-113 12-55 (193)
211 1lmb_3 Protein (lambda repress 21.1 35 0.0012 23.8 1.3 24 90-113 33-56 (92)
212 1rzs_A Antirepressor, regulato 21.0 32 0.0011 22.8 1.0 20 89-108 12-31 (61)
213 1j9i_A GPNU1 DBD;, terminase s 20.9 40 0.0014 22.7 1.5 21 90-110 5-25 (68)
214 3s8q_A R-M controller protein; 20.7 36 0.0012 23.2 1.3 23 90-112 27-49 (82)
215 2i10_A Putative TETR transcrip 20.7 64 0.0022 25.5 3.0 45 69-114 14-58 (202)
216 3o9x_A Uncharacterized HTH-typ 20.5 62 0.0021 24.4 2.8 40 67-113 71-110 (133)
217 3qq6_A HTH-type transcriptiona 20.4 37 0.0013 23.3 1.3 21 90-110 26-46 (78)
218 2joj_A Centrin protein; N-term 20.4 66 0.0023 20.9 2.6 42 67-108 1-49 (77)
219 3cwr_A Transcriptional regulat 20.3 25 0.00084 27.5 0.3 46 71-117 22-67 (208)
220 1x57_A Endothelial differentia 20.1 39 0.0013 23.6 1.4 24 90-113 29-52 (91)
221 1yio_A Response regulatory pro 20.1 75 0.0026 25.1 3.3 44 67-116 143-186 (208)
222 3lwj_A Putative TETR-family tr 20.0 25 0.00087 27.4 0.4 43 70-113 16-58 (202)
223 3f0c_A TETR-molecule A, transc 20.0 42 0.0014 26.4 1.8 44 69-113 14-57 (216)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.91 E-value=2.7e-26 Score=194.55 Aligned_cols=110 Identities=24% Similarity=0.296 Sum_probs=77.3
Q ss_pred HHHHHhCCCCCcccccCcccCCCCcCCCC----------CCCccCCCCCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHH
Q psy526 10 YYKKINNNNITNNTMSYYGKKDIRDARDL----------PKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRF 79 (274)
Q Consensus 10 ~~~~~~g~~~sqttis~fe~~~ls~~~~~----------~~~~~~~~~~~~~~~~~~~~k~rR~RT~ft~~Ql~~Le~~F 79 (274)
..-.+||++|+|+||||||+++++..++. .+.................+++||+||.|+..|+.+||..|
T Consensus 39 alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~LE~~F 118 (164)
T 2xsd_C 39 ALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHF 118 (164)
T ss_dssp HHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC-----------------------CCHHHHHHHHHHH
T ss_pred ccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCcccccccccccCCCCceeccHHHHHHHHHHH
Confidence 34679999999999999999999976662 11111111111222223456788899999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 80 NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 80 ~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
..++||+..+|++||..|||++++|+|||||||+|+||..
T Consensus 119 ~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 119 LKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred hcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 9999999999999999999999999999999999999854
No 2
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.90 E-value=5.4e-26 Score=190.95 Aligned_cols=108 Identities=22% Similarity=0.306 Sum_probs=84.8
Q ss_pred HHHHhCCCCCcccccCcccCCCCcCCCCC----------CCccCCCCCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHHh
Q psy526 11 YKKINNNNITNNTMSYYGKKDIRDARDLP----------KPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFN 80 (274)
Q Consensus 11 ~~~~~g~~~sqttis~fe~~~ls~~~~~~----------~~~~~~~~~~~~~~~~~~~k~rR~RT~ft~~Ql~~Le~~F~ 80 (274)
-..+||++|||+||||||+++++..++.. +.................+++||+||.|+..|+.+||..|.
T Consensus 37 l~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~ 116 (155)
T 3l1p_A 37 LGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFL 116 (155)
T ss_dssp HHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHSSCC---CCCSCCCCCCCCHHHHHHHHTTTT
T ss_pred HHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCccccccccccccCCCCCCcccCHHHHHHHHHHHc
Confidence 34689999999999999999999877521 11100111111112222257788999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 81 AQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 81 ~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.++||+..+|++||.+|||++++|+|||||||+|+||.
T Consensus 117 ~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 117 KSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp TCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 99999999999999999999999999999999999984
No 3
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.90 E-value=1.6e-25 Score=186.36 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=81.2
Q ss_pred HHHHHhCCCCCcccccCcccCCCCcCCCCC----------CCccCCCCCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHH
Q psy526 10 YYKKINNNNITNNTMSYYGKKDIRDARDLP----------KPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRF 79 (274)
Q Consensus 10 ~~~~~~g~~~sqttis~fe~~~ls~~~~~~----------~~~~~~~~~~~~~~~~~~~k~rR~RT~ft~~Ql~~Le~~F 79 (274)
..-.+||++|||+||||||+++++..++.. +...... ......+..+++||+||.|+..|+.+||..|
T Consensus 29 al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~--~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F 106 (146)
T 1au7_A 29 ALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGA--LYNEKVGANERKRKRRTTISIAAKDALERHF 106 (146)
T ss_dssp HHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC------------------CCCCCCCHHHHHHHHHHH
T ss_pred hcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccC--ccCcccCCCCCCCCCCcCccHHHHHHHHHHH
Confidence 345789999999999999999999776621 1111111 1112223446778899999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 80 NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 80 ~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
..++||+..+|++||..|||++++|+|||||||+|+||+
T Consensus 107 ~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 107 GEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred HHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 999999999999999999999999999999999999984
No 4
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.88 E-value=4.1e-24 Score=180.31 Aligned_cols=109 Identities=19% Similarity=0.314 Sum_probs=79.8
Q ss_pred HHHHHhCCCCCcccccCcccCCCCcCCCCC----------CCc------cCCCCCCCCC--CCCCCCCCCCCCCcCCHHH
Q psy526 10 YYKKINNNNITNNTMSYYGKKDIRDARDLP----------KPA------ALSNLPGLAQ--SQPPTGRKKRSRAAFSHAQ 71 (274)
Q Consensus 10 ~~~~~~g~~~sqttis~fe~~~ls~~~~~~----------~~~------~~~~~~~~~~--~~~~~~k~rR~RT~ft~~Q 71 (274)
..-.+||++|+|+|||+||.++++..+++. +.. .....+.... ......++||+||.|+..|
T Consensus 33 ~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~s~~~~~~~~~~~~~~~rr~Rt~ft~~Q 112 (160)
T 1e3o_C 33 AMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNI 112 (160)
T ss_dssp HHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC----------------------------CCCCCCHHH
T ss_pred hhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCCCCCCcCCCCCCCCCCCCcCccccCHHH
Confidence 345689999999999999999998766521 000 0000000000 1112357888999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 72 l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
+.+||.+|..++||+..+|++||.+|||++++|+|||||||+|+||+
T Consensus 113 ~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 113 RVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999984
No 5
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.88 E-value=1.7e-24 Score=180.96 Aligned_cols=106 Identities=21% Similarity=0.340 Sum_probs=83.9
Q ss_pred HHHhCCCCCcccccCcccCCCCcCCCCCCCc----------c--CCCCCCC-CCCCCCCCCCCCCCCcCCHHHHHHHHHH
Q psy526 12 KKINNNNITNNTMSYYGKKDIRDARDLPKPA----------A--LSNLPGL-AQSQPPTGRKKRSRAAFSHAQVYELEKR 78 (274)
Q Consensus 12 ~~~~g~~~sqttis~fe~~~ls~~~~~~~~~----------~--~~~~~~~-~~~~~~~~k~rR~RT~ft~~Ql~~Le~~ 78 (274)
..+||++|||+|||+|++++++..++....+ . ....... .......+++||+||.|+..|+.+||.+
T Consensus 32 ~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~ 111 (151)
T 3d1n_I 32 TATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAY 111 (151)
T ss_dssp SCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHHCSSCCCCCCCCCCCCHHHHHHHHHH
T ss_pred ccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcccccccCCCCCCCCCCCCcccCHHHHHHHHHH
Confidence 3578999999999999999998776631100 0 0000000 0011234577889999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 79 FNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 79 F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
|..++||+..+|++||.+|||++++|+|||||||+|+||
T Consensus 112 F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 112 FEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999987
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=6.7e-21 Score=142.76 Aligned_cols=68 Identities=29% Similarity=0.524 Sum_probs=63.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHHHHhc
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEG 125 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~~~~~ 125 (274)
.+.||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||..+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 46788899999999999999999999999999999999999999999999999999999987766543
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.7e-21 Score=142.53 Aligned_cols=64 Identities=28% Similarity=0.483 Sum_probs=60.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQ 121 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~ 121 (274)
.++||.||.|+.+|+.+||.+|..++||+..++++||.+|||++++|+|||||||+|+||+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999997654
No 8
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=4.3e-21 Score=143.78 Aligned_cols=64 Identities=34% Similarity=0.569 Sum_probs=60.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~ 120 (274)
..++||.||.|+.+|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999643
No 9
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.7e-21 Score=141.89 Aligned_cols=63 Identities=51% Similarity=0.810 Sum_probs=59.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
...+.||.||.|+..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 456778899999999999999999999999999999999999999999999999999999984
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.83 E-value=1.8e-20 Score=139.44 Aligned_cols=67 Identities=55% Similarity=0.893 Sum_probs=62.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHHH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~~ 122 (274)
...++||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||.....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 3456788899999999999999999999999999999999999999999999999999999976543
No 11
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.82 E-value=1.3e-20 Score=134.97 Aligned_cols=60 Identities=52% Similarity=0.836 Sum_probs=56.0
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
+.||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 468899999999999999999999999999999999999999999999999999999985
No 12
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.82 E-value=4.2e-21 Score=136.99 Aligned_cols=61 Identities=46% Similarity=0.702 Sum_probs=53.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
+++||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||.
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 3578899999999999999999999999999999999999999999999999999999984
No 13
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=141.22 Aligned_cols=65 Identities=42% Similarity=0.626 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 55 ~~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
....++||.||.|+..|+.+||.+|..++||+..+|++||..|||++++|+|||||||+|+||.+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999999999999999999999999999999999999999999999853
No 14
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.82 E-value=1.7e-20 Score=136.43 Aligned_cols=63 Identities=41% Similarity=0.695 Sum_probs=59.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~~ 122 (274)
+||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+|+...+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999999999999999999999999976553
No 15
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=139.95 Aligned_cols=63 Identities=22% Similarity=0.383 Sum_probs=59.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
...++||.||.|+.+|+.+||.+|..++||+..++++||.+|||++++|+|||||||+|+||.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 346778899999999999999999999999999999999999999999999999999999985
No 16
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=136.19 Aligned_cols=61 Identities=34% Similarity=0.613 Sum_probs=58.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.+.||.||.|+.+|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 4578889999999999999999999999999999999999999999999999999999985
No 17
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.4e-20 Score=137.57 Aligned_cols=62 Identities=34% Similarity=0.673 Sum_probs=58.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
..+.||+||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 35678899999999999999999999999999999999999999999999999999999984
No 18
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=1.4e-20 Score=141.32 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=58.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNA----QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~----~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.+++||+||.|+.+|+.+||..|+. ++||+..+|++||..|||++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4578889999999999999999999 999999999999999999999999999999999875
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.81 E-value=1.6e-20 Score=133.61 Aligned_cols=59 Identities=42% Similarity=0.769 Sum_probs=53.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
++||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 35788999999999999999999999999999999999999999999999999999997
No 20
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.81 E-value=6.2e-20 Score=136.54 Aligned_cols=66 Identities=42% Similarity=0.645 Sum_probs=61.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~~ 122 (274)
.++.||+||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||..+..
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 356788999999999999999999999999999999999999999999999999999999987653
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=135.64 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=59.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
..++||.||.|+.+|+.+||.+|..++||+..++++||..|||++++|+|||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 35678899999999999999999999999999999999999999999999999999999985
No 22
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.81 E-value=1.2e-20 Score=137.06 Aligned_cols=63 Identities=33% Similarity=0.646 Sum_probs=59.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~ 120 (274)
+++||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||...
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 467899999999999999999999999999999999999999999999999999999998653
No 23
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=3.4e-20 Score=142.94 Aligned_cols=66 Identities=50% Similarity=0.817 Sum_probs=61.4
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQ 121 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~ 121 (274)
...++||+||.|+..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 345678899999999999999999999999999999999999999999999999999999997644
No 24
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=135.84 Aligned_cols=62 Identities=27% Similarity=0.478 Sum_probs=59.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.+++||.||.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 35678899999999999999999999999999999999999999999999999999999984
No 25
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=3.9e-20 Score=130.12 Aligned_cols=57 Identities=56% Similarity=0.894 Sum_probs=55.6
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
||+||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999997
No 26
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=6e-20 Score=134.14 Aligned_cols=62 Identities=53% Similarity=0.775 Sum_probs=58.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.+.||+|+.|+.+|+.+||.+|..++||+..++++||..|||++++|+|||||||+|+||..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 45677899999999999999999999999999999999999999999999999999999863
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.80 E-value=4.9e-20 Score=138.27 Aligned_cols=64 Identities=34% Similarity=0.655 Sum_probs=59.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~ 120 (274)
.+++||.||.|+..|+.+||.+|..++||+..++++||..|||++++|+|||||||+|+||+..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4677889999999999999999999999999999999999999999999999999999999764
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3e-20 Score=139.15 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=59.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQ----KYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~----~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
..++||.||.|+.+|+.+||.+|..+ +||+..+|++||.+|||++++|+|||||||+|+||.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 45778899999999999999999999 999999999999999999999999999999999984
No 29
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.80 E-value=2.7e-20 Score=139.82 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
...++||.||.|+.+|+.+|| .|.. ++||+..+|++||.+|||++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 456788999999999999999 7999 999999999999999999999999999999999875
No 30
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-20 Score=135.98 Aligned_cols=62 Identities=47% Similarity=0.761 Sum_probs=58.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
..+.||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 35678899999999999999999999999999999999999999999999999999999984
No 31
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.80 E-value=4.6e-20 Score=134.15 Aligned_cols=60 Identities=47% Similarity=0.805 Sum_probs=57.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
+||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 578899999999999999999999999999999999999999999999999999999964
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=3.6e-20 Score=133.75 Aligned_cols=60 Identities=22% Similarity=0.450 Sum_probs=57.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
++||.||.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 568899999999999999999999999999999999999999999999999999999874
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.80 E-value=4.4e-20 Score=138.72 Aligned_cols=63 Identities=44% Similarity=0.784 Sum_probs=54.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.+++||.||.|+..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 456788999999999999999999999999999999999999999999999999999999853
No 34
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.80 E-value=6.9e-20 Score=134.99 Aligned_cols=61 Identities=33% Similarity=0.648 Sum_probs=58.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.+.||+||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999985
No 35
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=6.4e-20 Score=130.01 Aligned_cols=58 Identities=47% Similarity=0.835 Sum_probs=55.6
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
||.||.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999984
No 36
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=1e-19 Score=132.19 Aligned_cols=60 Identities=62% Similarity=1.009 Sum_probs=57.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
+||.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 678899999999999999999999999999999999999999999999999999999864
No 37
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=133.81 Aligned_cols=63 Identities=40% Similarity=0.656 Sum_probs=59.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
..+++||.||.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||.
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999999999999999999985
No 38
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.79 E-value=8.1e-20 Score=129.72 Aligned_cols=59 Identities=29% Similarity=0.514 Sum_probs=48.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
.++||.||.|+..|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 56788999999999999999999999999999999999999999999999999999975
No 39
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=9.3e-20 Score=135.40 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=54.9
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHH
Q psy526 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQ 121 (274)
Q Consensus 63 ~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~ 121 (274)
+|+.||.+|+.+||++|..++||+..+|++||..|||++++|+|||||||+|+|+....
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999986433
No 40
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=126.80 Aligned_cols=57 Identities=67% Similarity=1.094 Sum_probs=54.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
+||.||.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 567899999999999999999999999999999999999999999999999999975
No 41
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.9e-19 Score=139.09 Aligned_cols=65 Identities=26% Similarity=0.432 Sum_probs=61.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCcccchhhhhhhhhHHHHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK---------------LTETQVKIWFQNRRYKTKRKQLQ 121 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~---------------L~~~~V~vWFqNrR~k~Kr~~~~ 121 (274)
..++||.||.|+..|+.+||.+|..++||+..+|++||..|| |++.+|+|||||||+|+||+..+
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 357788999999999999999999999999999999999999 99999999999999999997654
No 42
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=137.92 Aligned_cols=67 Identities=28% Similarity=0.371 Sum_probs=62.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCcccchhhhhhhhhHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL---------------------KLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l---------------------~L~~~~V~vWFqNrR~k~ 115 (274)
.+++||.||.|+..|+.+||+.|..++||+..+|++||..| .|++.+|+|||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45788999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHH
Q psy526 116 KRKQLQLL 123 (274)
Q Consensus 116 Kr~~~~~~ 123 (274)
|++.....
T Consensus 83 kr~~~~~~ 90 (102)
T 2da6_A 83 AFRQKLAM 90 (102)
T ss_dssp HHHHHHHH
T ss_pred HHhhHhhh
Confidence 99876653
No 43
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.78 E-value=2.6e-19 Score=136.45 Aligned_cols=62 Identities=47% Similarity=0.807 Sum_probs=55.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.++.||.||.|+..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45678899999999999999999999999999999999999999999999999999999985
No 44
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=129.92 Aligned_cols=60 Identities=38% Similarity=0.584 Sum_probs=57.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.||+||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 368899999999999999999999999999999999999999999999999999999853
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.1e-19 Score=139.33 Aligned_cols=63 Identities=49% Similarity=0.781 Sum_probs=56.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~ 120 (274)
++.||+||.|+..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 567889999999999999999999999999999999999999999999999999999998753
No 46
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=3.9e-19 Score=130.91 Aligned_cols=59 Identities=27% Similarity=0.313 Sum_probs=56.4
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNA-QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~-~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
+++||.|+..|+.+||..|.. ++||+..++++||..|||++++|+|||||||+|+||..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567999999999999999995 99999999999999999999999999999999999965
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=4e-19 Score=130.42 Aligned_cols=59 Identities=29% Similarity=0.350 Sum_probs=56.2
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNA-QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~-~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.++||.|+..|+.+||..|.. ++||+..+|++||..|||++++|+|||||||+|+||..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999965
No 48
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.77 E-value=2e-19 Score=127.39 Aligned_cols=57 Identities=37% Similarity=0.621 Sum_probs=50.7
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 63 ~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 489999999999999999999999999999999999999999999999999999864
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=124.04 Aligned_cols=54 Identities=57% Similarity=0.906 Sum_probs=51.1
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
|.|+..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999985
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.1e-18 Score=128.27 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=58.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNA---QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.++.||+|+.|+..|+.+||.+|.. ++||+..++++||.++||++++|+|||||||+|+|+..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 3467888999999999999999987 99999999999999999999999999999999999853
No 51
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.75 E-value=6.2e-19 Score=136.52 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=56.4
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
...+.+|+||.|+..|+.+||..|..++||+..+|++||.+|||++++|+|||||||+|+||.+
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 3456678899999999999999999999999999999999999999999999999999999864
No 52
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=9.2e-19 Score=126.40 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=56.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNA-QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~-~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
..++||.||.|+.+||.+|+.+|+. ++||+...|+.||.+|||++++|+|||||||.-.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3578899999999999999999999 99999999999999999999999999999997543
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=131.30 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=57.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNA---QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.++||+|+.|+.+|+.+|+.+|.. ++||+..+|++||.++||+++||+|||||||+|+|+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 467788999999999999999987 69999999999999999999999999999999998864
No 54
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=128.79 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=57.6
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
..++.||.|+.+|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||.+
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3467899999999999999999999999999999999999999999999999999999853
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.75 E-value=5e-19 Score=134.35 Aligned_cols=62 Identities=27% Similarity=0.439 Sum_probs=57.1
Q ss_pred CCCCCCcCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRF---NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQ 121 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F---~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~ 121 (274)
.||+|+.|+..|+.+||.+| ..++||+..++++||.+|||++.+|+|||||||+|+||....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 36889999999999999999 899999999999999999999999999999999999986543
No 56
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=129.34 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=56.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
..+.||.|+.+|+.+||..|..++||+..+|++||.+|||++++|+|||||||+|+||.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 34568999999999999999999999999999999999999999999999999999985
No 57
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.74 E-value=1.8e-18 Score=127.16 Aligned_cols=60 Identities=28% Similarity=0.470 Sum_probs=57.0
Q ss_pred CCCCCCcCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRF---NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F---~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.||+|+.|+..|+.+||.+| ..++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 36889999999999999999 8999999999999999999999999999999999999854
No 58
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=126.98 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=54.5
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
++|+.||.+|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 3466799999999999999999999999999999999999999999999999999854
No 59
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=7.6e-19 Score=125.92 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=56.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 59 RKKRSRAAFSHAQVYELEKRF---NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F---~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
..+|+|+.|+..|+.+||.+| ..++||+..++++||..+||++.+|+|||||||+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999 89999999999999999999999999999999999886
No 60
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.73 E-value=4.2e-18 Score=120.48 Aligned_cols=55 Identities=31% Similarity=0.461 Sum_probs=53.3
Q ss_pred CCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 63 SRAAFSHAQVYELEKRFNA---QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 63 ~RT~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
+|+.|+.+|+.+||.+|.. ++||+..++++||.++||++.+|++||+|||+|+||
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4789999999999999999 999999999999999999999999999999999987
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.72 E-value=4.9e-18 Score=129.03 Aligned_cols=60 Identities=30% Similarity=0.428 Sum_probs=56.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNA---QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.+++|+|+.|+.+|+.+||.+|.. ++||+..++++||..+||++++|+|||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 456677999999999999999999 999999999999999999999999999999999873
No 62
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=2.9e-18 Score=131.20 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.||.+||.+||+.|..++||+..+|++||..|||++++|+|||||||+||||+.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 689999999999999999999999999999999999999999999999999854
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.71 E-value=2e-18 Score=134.67 Aligned_cols=65 Identities=31% Similarity=0.429 Sum_probs=54.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCcccchhhhhhhhhH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKS------------------LK---LTETQVKIWFQNRRYK 114 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~------------------l~---L~~~~V~vWFqNrR~k 114 (274)
..+++||.||.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+|
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34678889999999999999999999999999999999999 88 9999999999999999
Q ss_pred HHHHHH
Q psy526 115 TKRKQL 120 (274)
Q Consensus 115 ~Kr~~~ 120 (274)
+|++..
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 887643
No 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=127.77 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
||.+|+.+||..|..++||+..+|++||.+|||++++|+|||||||+|+|+..
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999998854
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.70 E-value=9.8e-18 Score=126.42 Aligned_cols=58 Identities=28% Similarity=0.383 Sum_probs=53.7
Q ss_pred CCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNA---QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
+++|+.|+..|+.+||.+|.. ++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 445677999999999999999 9999999999999999999999999999999999985
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=120.25 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 68 SHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 68 t~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
+.+|+.+||..|..++||+..+|++||..|||++++|++||||||+|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 6899999999999999999999999999999999999999999999999753
No 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3.2e-18 Score=125.99 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=53.0
Q ss_pred CCCCCcCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRF-NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F-~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.+.|+.++.+|+.+||..| ..++||+..+|++||.+|||++++|+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3445667788999999999 999999999999999999999999999999999999973
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=118.66 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
+..++..|+.+||..|..++||+..+|++||.+|||++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 445679999999999999999999999999999999999999999999999776
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-17 Score=119.80 Aligned_cols=55 Identities=76% Similarity=1.118 Sum_probs=52.0
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
..++..|+.+||..|..++||+..+|++||.+|||++++|+|||||||+|+||.+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 3578999999999999999999999999999999999999999999999999853
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.66 E-value=3.9e-17 Score=137.78 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=55.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 57 ~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
..++||+||.|+..|+.+||..|..++||+..+|++||.+|||++++|+|||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 356788999999999999999999999999999999999999999999999999999999854
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=4.1e-17 Score=117.33 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=45.6
Q ss_pred HHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 70 AQVYELEKRF-NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 70 ~Ql~~Le~~F-~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.|+.+||+.| ..++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 4799999999 57999999999999999999999999999999999986
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.4e-15 Score=110.20 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=50.4
Q ss_pred CcCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHH
Q psy526 65 AAFSHAQVYELEKRFN---AQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~---~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~ 120 (274)
..|+.+|+.+|+.+|. .++||+..++++||..+||++++|++||||||+|+||...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 3699999999999999 9999999999999999999999999999999999998543
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-15 Score=109.80 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
.+|+.+||++|..+++|+.+++..||..+||++++|||||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999974
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.56 E-value=5.7e-16 Score=134.25 Aligned_cols=62 Identities=31% Similarity=0.421 Sum_probs=53.9
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCcccchhhhhhhhhH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK---------------------LTETQVKIWFQNRRYK 114 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~---------------------L~~~~V~vWFqNrR~k 114 (274)
..+++||.||.|+..|+.+||+.|..++||+..+|++||..|+ |++.+|+|||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4467889999999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q psy526 115 TKR 117 (274)
Q Consensus 115 ~Kr 117 (274)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.48 E-value=1.8e-14 Score=126.51 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCcccchhhhhhhhh
Q psy526 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK---------------------LTETQVKIWFQNRRY 113 (274)
Q Consensus 55 ~~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~---------------------L~~~~V~vWFqNrR~ 113 (274)
...+++||.||.|+..|+.+||++|..++||+..+|++||..+| |++.+|+|||+|||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 44577899999999999999999999999999999999999998 899999999999998
Q ss_pred HH
Q psy526 114 KT 115 (274)
Q Consensus 114 k~ 115 (274)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 63
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=104.78 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=53.5
Q ss_pred CcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHHH
Q psy526 65 AAFSHAQVYELEKRFNA---QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~~ 122 (274)
-.|+.+++.+|+.+|.. ++||+..++++||.++||++.||++||+|+|.|+|+.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999987 99999999999999999999999999999999998875543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.35 E-value=1.6e-13 Score=128.60 Aligned_cols=57 Identities=33% Similarity=0.516 Sum_probs=53.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
.++.|+.|+..|+..||+.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 356688999999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.67 E-value=4e-09 Score=67.33 Aligned_cols=23 Identities=48% Similarity=0.788 Sum_probs=19.7
Q ss_pred ccchhhhhhhhhHHHHHHHHHHh
Q psy526 102 TQVKIWFQNRRYKTKRKQLQLLE 124 (274)
Q Consensus 102 ~~V~vWFqNrR~k~Kr~~~~~~~ 124 (274)
+||+|||||||+||||.......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999998876533
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.40 E-value=0.014 Score=41.90 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhh
Q psy526 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 72 l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqN 110 (274)
.+.|+.+|...+.+.......|+.+..|+..+|+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 368999999999999999999999999999999999954
No 80
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.24 E-value=1.3 Score=32.12 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=33.0
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhh
Q psy526 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFq 109 (274)
++|+.+..|+.++....-..+.. .. -..+||..+|++...|..|.+
T Consensus 15 ~~~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 15 KGKRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCSSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34456678898886555555542 22 356889999999999999974
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=83.83 E-value=1.5 Score=29.28 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhh
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqN 110 (274)
|..|+.+....+...+.. .........+||.++|++...|..|.+.
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 446888887777554443 3322223678999999999999999753
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=83.68 E-value=2.1 Score=31.03 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~ 120 (274)
.++..++.+|.-.|... ....+||..+|++...|+.+...-|.|.|+...
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 36777888887765332 246789999999999999999888888777543
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=82.68 E-value=2.2 Score=32.72 Aligned_cols=49 Identities=10% Similarity=0.273 Sum_probs=38.2
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 63 ~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
+|..||.++...+-..+..+.... ..+||..+|++...|..|.++++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 577899999988877776555544 3368999999999999998776543
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=77.79 E-value=2.2 Score=28.68 Aligned_cols=48 Identities=13% Similarity=-0.074 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.++..+..+|...|... ....+||..+|++...|+.|...-|.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47788889998876432 3457899999999999999987777766654
No 85
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=75.06 E-value=0.045 Score=45.13 Aligned_cols=31 Identities=6% Similarity=-0.057 Sum_probs=22.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGP 88 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~ 88 (274)
.+.||.||.|+..|++.|+..|+.++||...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 5678999999999999999999999999753
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=73.63 E-value=4.6 Score=24.54 Aligned_cols=40 Identities=8% Similarity=0.221 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhh
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqN 110 (274)
.++.++...+...+.. .+ ...+||..+|++...|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 4667766555555543 22 3668999999999999999854
No 87
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=72.94 E-value=5.9 Score=29.57 Aligned_cols=46 Identities=13% Similarity=-0.004 Sum_probs=36.0
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
...++..++++|.-.+.-- ...+||..+|+++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4568999999998765322 347899999999999999987665554
No 88
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=72.30 E-value=1.8 Score=27.04 Aligned_cols=43 Identities=9% Similarity=0.174 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
++.+++..+...+... ....+||..+|++...|..|+.....+
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~~ 48 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSIK 48 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC--
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 4455555554455432 235689999999999999999765443
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=70.59 E-value=4 Score=29.94 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=34.8
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
..++..++.+|.-.+.-- ...+||..+|++...|+.+..+-+.|.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 358999999998864322 3478999999999999998876665544
No 90
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=69.95 E-value=7.5 Score=29.91 Aligned_cols=49 Identities=18% Similarity=0.083 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~ 120 (274)
.++..+..+|. .|- ......+||..+|++...|+.+...-|.|.|+.-.
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777 332 22356789999999999999999877777776543
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=68.92 E-value=4.9 Score=28.59 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=37.1
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
-..++..++++|.-++. . ....+||..+|++...|+.+..+-+.|.+.
T Consensus 19 ~~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 34689999999988532 2 346789999999999999998776666554
No 92
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=67.51 E-value=23 Score=25.90 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=38.2
Q ss_pred CCCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhC--CCcccchhhhh
Q psy526 62 RSRAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLK--LTETQVKIWFQ 109 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~--L~~~~V~vWFq 109 (274)
+....++.+++..|+..|.. +.+.+..+...+...+| ++...|+.+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34567899999999999974 56899999999988887 46677777764
No 93
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=67.45 E-value=5.2 Score=27.09 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=35.9
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
...++..++.+|...+ ..+ ...+||..+|++...|+.+...-+.|.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3458999999998843 232 4568999999999999999877665554
No 94
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=67.24 E-value=9.2 Score=30.21 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=38.1
Q ss_pred CCCCCcCCHHHHHHHHHHH-hhCCCCCHHHHHHHH-HHh--CCCcccchhhhhh
Q psy526 61 KRSRAAFSHAQVYELEKRF-NAQKYLSGPERADVA-KSL--KLTETQVKIWFQN 110 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F-~~~~~Ps~~~r~~LA-~~l--~L~~~~V~vWFqN 110 (274)
+++|..+|.+|...|-.++ +.++..+..+....| .+. +++...|.-|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5678999999999999999 677776665444422 266 7888999999866
No 95
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=66.16 E-value=9.3 Score=29.14 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.++..+..+|.-.|... ....+||..+|++...|+.|...-|.+.|+.
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888888888876433 2357899999999999999998888777764
No 96
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=65.90 E-value=4.1 Score=27.62 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.++..+..+|...|....+- .....+||..+|++...|+.+...-+.|.|+
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888999998887321111 1335779999999999999998766666554
No 97
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=65.67 E-value=9.9 Score=26.00 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
.++..+..+|...|..... ......+||..+|++...|+.|...-+.|.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788999999988852100 1123568999999999999999877666665
No 98
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=64.23 E-value=5.8 Score=27.32 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.++..+..+|.-+| .. ....+||..+|++...|+.+..+-+.|.+.
T Consensus 16 ~L~~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVV--AG----LPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHT--TT----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 36788888887743 22 234689999999999999998777766553
No 99
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=63.01 E-value=11 Score=27.47 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=34.8
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
.....|+..++.+|.-.+ ..+ ...+||..||++...|+...++-+.|.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ----CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 345579999999998776 222 467899999999999998877655443
No 100
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=61.16 E-value=15 Score=27.86 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.++..+..+|.-.|... ....+||..+|++...|+.+...-|.+.|+..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46778888887765332 24578999999999999999988888877653
No 101
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=61.00 E-value=8.1 Score=27.53 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHHH
Q psy526 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122 (274)
Q Consensus 72 l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~~ 122 (274)
+...+-.|+.|+||..+--.. | -.|||.+|+..+.+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHH
Confidence 345566688999998652211 1 268999999877665
No 102
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=58.48 E-value=9.3 Score=31.47 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.++..+..+|.-.|.. .....+||..+|++...|+.+...-|.|.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3677888888877643 23467899999999999999998877777764
No 103
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=57.77 E-value=5.7 Score=28.60 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=35.4
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
-..++..++.+|.-.+. .+ ...+||..+|++...|+.+..+-+.|.+
T Consensus 27 l~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34588899999987543 22 2457999999999999999877666654
No 104
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=57.06 E-value=12 Score=29.94 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
++..+..+|.-.|-.. ....+||..+|++...|+.+...-|.|.|+.
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5666667776655322 2356899999999999999988777777664
No 105
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=56.32 E-value=11 Score=26.99 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.++..+..+|...|-...- ......+||..+|++...|+.|...-+.|.|+
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4788899999888742100 12346689999999999999998766666554
No 106
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=54.88 E-value=14 Score=26.57 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCcCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCCcccchhhhhh
Q psy526 64 RAAFSHAQVYELEKRFNAQ-KYLSGPERADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~-~~Ps~~~r~~LA~~l~L~~~~V~vWFqN 110 (274)
|..|+.++....-..+... . ....+||..+|++...|..|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHHH
Confidence 3468887776555555322 2 23678999999999999999754
No 107
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=47.18 E-value=8.4 Score=30.47 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
.-+..-...|.+..| . -...+||+..|+++..|-.+|.|+-.
T Consensus 19 ~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 19 KILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 456666777989998 6 78999999999999999999999743
No 108
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=46.17 E-value=9.8 Score=24.77 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 71 QVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 71 Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
|+++|.-.+. .+ ...+||..+|++...|+.+..+-+.|.+.
T Consensus 3 e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 3 ERQVLKLIDE--GY----TNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHHHHT--SC----CSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 4556655332 22 23579999999999999998877666543
No 109
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=44.90 E-value=37 Score=25.19 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
.++..|..++.-.|-.+.+ ......+||..+|++...|+.+...-+.|.|+..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3677788888887753211 1235678999999999999999877777766543
No 110
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=44.82 E-value=25 Score=29.54 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=35.9
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
...++..++++|.-.++ . ..-.+||..||++++.|+.+.+|-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--G----KTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--T----CCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 45689999999976542 2 23477999999999999999887766643
No 111
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=44.15 E-value=23 Score=27.41 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=25.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHHHH
Q psy526 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLL 123 (274)
Q Consensus 72 l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~~~ 123 (274)
+...+-.|+.|+||...--. .=-+|||.+||+++.+..
T Consensus 15 vRiIkiLyQSNPyP~peGTR--------------qaRRNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGTR--------------QARRNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCCT--------------TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCch--------------hhhHhHHHHHHHHHHHHH
Confidence 34555668889999864111 112799999998876653
No 112
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=44.08 E-value=21 Score=22.63 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=27.4
Q ss_pred cCC--HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhh
Q psy526 66 AFS--HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 66 ~ft--~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFq 109 (274)
.++ ..+...+...+.. .+ ...+||..+|++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 455 5565555555543 22 466899999999999999974
No 113
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=43.84 E-value=20 Score=25.39 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccchhhhh
Q psy526 66 AFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~~~~V~vWFq 109 (274)
.++.+++..+++.|.. +.+.+..+...+...+|++...|+.+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899999999964 5578888888888888998877766654
No 114
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=42.58 E-value=17 Score=25.53 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=37.1
Q ss_pred CCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccchhhhh
Q psy526 64 RAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~~~~V~vWFq 109 (274)
-..++.+++..|+..|.. +.+.+..+...+...+|++...|+.+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 456888999999999963 5688899999998999988877777764
No 115
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=41.39 E-value=32 Score=25.13 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCcCCHHHHHHHHHHH-hhC-CCCCH-HHHHHHHHHhCCCcccchhhhh
Q psy526 64 RAAFSHAQVYELEKRF-NAQ-KYLSG-PERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F-~~~-~~Ps~-~~r~~LA~~l~L~~~~V~vWFq 109 (274)
|..|+.++....-..+ ... .+.+. ....+||..+|++...|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3458887775444443 321 12332 3567899999999999999963
No 116
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=41.04 E-value=44 Score=25.87 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=32.8
Q ss_pred CCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcc
Q psy526 63 SRAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLTET 102 (274)
Q Consensus 63 ~RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~~~ 102 (274)
+|..+|.+|+..|+..|.. +.+.+..+...+...||+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3567999999999999974 668999999998888886543
No 117
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=39.20 E-value=35 Score=28.58 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=35.9
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
...++..++++|.-.+ .. ..-.+||..||+++..|+...+|-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~--~g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA--VG----KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHT--TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4569999999997643 22 24578999999999999999887666643
No 118
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.77 E-value=29 Score=29.65 Aligned_cols=48 Identities=17% Similarity=0.027 Sum_probs=38.0
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
..++..++++|.-.+ ..+ ...+||..||++...|++...+-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 468999999998864 232 467899999999999999988877776653
No 119
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=38.25 E-value=7.7 Score=30.82 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=22.5
Q ss_pred HHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 91 ADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 91 ~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.+||..+|++...|+.+...-|.+.|+.
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999988777776653
No 120
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=37.85 E-value=14 Score=25.49 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCcccchhhhhhhhhH
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
..+||..+|++...|.-|..+++.-
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~~p 38 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGRVP 38 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 5789999999999999999887643
No 121
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=37.33 E-value=12 Score=24.13 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 122
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=36.90 E-value=18 Score=25.49 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
..+||+.||++..-|.-|..++..-.+++
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~~ 41 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLRQ 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHHH
Confidence 78899999999999999998765555444
No 123
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=36.06 E-value=26 Score=25.05 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccchhhhh
Q psy526 67 FSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~~~~V~vWFq 109 (274)
++.+++..|++.|.. +.+.+..+...+...+|++...|+.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567888999999853 5678899988888888998877776664
No 124
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.95 E-value=14 Score=24.08 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 125
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=35.72 E-value=36 Score=27.84 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=35.1
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
..+|..+.++|+-...- ....+||..++++.+.|++..+|-|.|.
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 35888898888765432 2467899999999999999988777654
No 126
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=35.35 E-value=48 Score=24.80 Aligned_cols=41 Identities=7% Similarity=0.225 Sum_probs=31.0
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhh
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqN 110 (274)
..++.++...+...+.. .+ -..+||..+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHc
Confidence 45778777777666643 22 3567899999999999999864
No 127
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.64 E-value=45 Score=26.02 Aligned_cols=41 Identities=7% Similarity=0.104 Sum_probs=30.8
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhh
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqN 110 (274)
..++.+++..+-..+... .-..+||..+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 357888777766666533 23567899999999999999864
No 128
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=34.09 E-value=15 Score=24.21 Aligned_cols=24 Identities=4% Similarity=0.117 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999987664
No 129
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=33.97 E-value=71 Score=22.35 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=29.2
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccch
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~ 105 (274)
+..+|.++...|++....-+--+...-+.||..+|=+..+|+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~ 49 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVT 49 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHH
Confidence 456999999999999876653233334568988875554444
No 130
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=33.76 E-value=59 Score=24.26 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC--CCcccchhhhhhhhh
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLK--LTETQVKIWFQNRRY 113 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~--L~~~~V~vWFqNrR~ 113 (274)
.++.++...+... ..++..+. .+|+..+| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4788887777666 44454444 46778888 788999999976554
No 131
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.42 E-value=16 Score=24.44 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 132
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=33.31 E-value=67 Score=24.96 Aligned_cols=46 Identities=7% Similarity=-0.078 Sum_probs=29.3
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH-------hCCCcccchhhhhh
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKS-------LKLTETQVKIWFQN 110 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~-------l~L~~~~V~vWFqN 110 (274)
..++.++...+......++..+..++...... ..++...|..|++.
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 45677777888888877776666554432222 13677788888754
No 133
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=32.84 E-value=20 Score=28.32 Aligned_cols=44 Identities=14% Similarity=0.310 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..-+....+.|.+..|-. -...+||+..|+++..|-.+|.++-.
T Consensus 34 ~~Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 34 TQIIKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344566667788888653 44667899999999999999999854
No 134
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=32.75 E-value=22 Score=28.46 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.-++...+.|.+..|-. -...+||+..|+++..|-.+|.|+..=..-
T Consensus 32 ~Il~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~ 78 (215)
T 2qko_A 32 ALVNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDLFDQ 78 (215)
T ss_dssp HHHHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHHHHH
Confidence 34556666788888643 456779999999999999999997554443
No 135
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=32.46 E-value=69 Score=27.57 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=36.3
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
...+|..++++|.-... . ....+||..||++++.|+....|-+.|..
T Consensus 195 ~~~Lt~re~~vl~~~~~--G----~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSR--G----KTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCCHHHHHHHHHHHT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 35688888888877642 2 23578999999999999999888776644
No 136
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=32.16 E-value=50 Score=22.63 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCcccchhhhhhhh
Q psy526 89 ERADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 89 ~r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
...+||..+|++...|.-|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 456899999999999999998876
No 137
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=31.89 E-value=18 Score=24.26 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcccchhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
..+||..+|++...|.-|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998864
No 138
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=31.66 E-value=77 Score=21.90 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=38.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCC--CCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQK--YLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~--~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.+++|-.+|.+.-...-.+.++-. .-++..+.++-..-||+..+|+.=.|.-|.+.||
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 356678888765544444433322 2335566666666689999999999988887776
No 139
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.51 E-value=18 Score=24.16 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 140
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=31.45 E-value=15 Score=30.08 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 72 l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
++...+.|.+..|- .-...+||++.|+++..|-.+|.|+..
T Consensus 50 l~aA~~lf~e~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~ 90 (236)
T 3q0w_A 50 LATAENLLEDRPLA-DISVDDLAKGAGISRPTFYFYFPSKEA 90 (236)
T ss_dssp HHHHHHHHHHSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCcc-cCCHHHHHHHhCCcHHHHHHHCCCHHH
Confidence 45555668887754 344667899999999999999999843
No 141
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=31.36 E-value=46 Score=26.61 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=36.5
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
..+|..+.++|+-...-. .+.+||..++++.+.|++..+|-|.|..
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 458999999888665421 3788999999999999999888777754
No 142
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=31.22 E-value=31 Score=28.96 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=34.6
Q ss_pred CCCcCCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 63 SRAAFSHAQ-VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 63 ~RT~ft~~Q-l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
+|...+.++ +..-.+.|....|-. -...+||+.+|+++..|-.+|.||..=
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~L 76 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTEL 76 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHHH
Confidence 344555544 445556677776544 446678999999999999999997543
No 143
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.19 E-value=21 Score=27.99 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.++..+..+|.-.| -......+||..+|++...|+.+...-|.+.|+
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46677777775443 333456789999999999999998766666554
No 144
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=31.15 E-value=1.1e+02 Score=23.22 Aligned_cols=48 Identities=6% Similarity=-0.011 Sum_probs=31.7
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHH-HHHHh----C--CCcccchhhhhhh
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERAD-VAKSL----K--LTETQVKIWFQNR 111 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~-LA~~l----~--L~~~~V~vWFqNr 111 (274)
+..++.++...+......++..+..++.. |..+. | ++...|..|+..+
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 34578888888888888777666554433 21211 5 6788888887643
No 145
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.67 E-value=19 Score=28.78 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
.-++.....|.+.. ..-...+||+..|+++..|-.+|.|+..
T Consensus 24 ~Il~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 24 ALFTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 44555566687777 7777888999999999999999999744
No 146
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=30.52 E-value=65 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=29.0
Q ss_pred CCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCC
Q psy526 64 RAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLT 100 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~ 100 (274)
...++.+++..|+..|.. +.+.+..+...+...+|..
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCC
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCC
Confidence 345778889999999863 5689999999988888753
No 147
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=30.48 E-value=24 Score=28.53 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..-++.-.+.|.+..|-. -...+||+..|+++..|-.+|.|+-.
T Consensus 38 ~~Il~aA~~lf~~~G~~~-~t~~~IA~~AGvs~~tlY~~F~sKe~ 81 (221)
T 3g7r_A 38 ARLLGTATRIFYAEGIHS-VGIDRITAEAQVTRATLYRHFSGKDD 81 (221)
T ss_dssp HHHHHHHHHHHHHHCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 344555556688877654 34667899999999999999999743
No 148
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=30.16 E-value=19 Score=24.07 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcccchhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
..+||..+|++...|.-|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999998765
No 149
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=29.93 E-value=18 Score=28.08 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 71 QVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 71 Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
-+..-.+.|.+. ..-...+||+..|+++..|-.+|.|+..
T Consensus 19 Il~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (190)
T 2v57_A 19 ILDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTD 58 (190)
T ss_dssp HHHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344455567665 6677888999999999999999999744
No 150
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=29.60 E-value=8.8 Score=31.38 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
.-++.-...|.+..|- .-...+||+..|+++..|-.+|.|+-.=
T Consensus 34 ~Il~aA~~lf~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~sK~~L 77 (226)
T 2pz9_A 34 RIVAAAKEEFARHGIA-GARVDRIAKQARTSKERVYAYFRSKEAL 77 (226)
T ss_dssp HHHHHHHHHHHHHHHH-HCCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHhCcc-cCcHHHHHHHHCCChHHHHHHcCCHHHH
Confidence 4455556667766643 3346779999999999999999997544
No 151
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=29.56 E-value=20 Score=23.38 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999887654
No 152
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=29.41 E-value=1.5e+02 Score=20.76 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=31.6
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh-CCCcccchh
Q psy526 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL-KLTETQVKI 106 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l-~L~~~~V~v 106 (274)
-.+..||.++-..|+......+.-....=..||..+ |=+..+|+.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~ 61 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIA 61 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHH
Confidence 346679999999999998775544455566789888 445554443
No 153
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=28.55 E-value=21 Score=25.40 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 567999999999999999988654
No 154
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=28.50 E-value=15 Score=28.92 Aligned_cols=24 Identities=13% Similarity=0.463 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
...||..+|+...+++.|+...|+
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 467899999999999999987663
No 155
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=28.46 E-value=62 Score=23.44 Aligned_cols=40 Identities=5% Similarity=0.098 Sum_probs=29.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhh
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqN 110 (274)
.++.++...+-..+. ..+ -..+||..+|++...|..|++.
T Consensus 17 ~~s~~~r~~i~~~~~-~g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 477777766666664 332 2467899999999999999853
No 156
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=28.32 E-value=22 Score=24.40 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 467999999999999999988765
No 157
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=28.06 E-value=20 Score=29.76 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 72 l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
++...+.|.+..|-. -...+||+..|+++..|-.+|.|+..
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 555566677776543 34667899999999999999998743
No 158
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=28.03 E-value=9.7 Score=30.15 Aligned_cols=41 Identities=7% Similarity=0.104 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
.-+......|.+..| . -...+||+..|+++..|-..|.|+-
T Consensus 20 ~Il~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 20 RIIEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHH
Confidence 345566667889999 5 5889999999999999999999874
No 159
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=27.98 E-value=42 Score=28.03 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=35.2
Q ss_pred CCCCCcCCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 61 KRSRAAFSHAQ-VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 61 rR~RT~ft~~Q-l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
|+.|...+.++ +......|....|-. -...+||+.+|+++..|-..|.||-.=.
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll 64 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAELL 64 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHHHH
Confidence 33344455544 455566687777644 4466789999999999999999975443
No 160
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=27.93 E-value=79 Score=23.52 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=35.6
Q ss_pred CCCCcCCHHHHHHHHHHHhh------CCCCCHHHHHHHHHHhC--CCcccchhhhh
Q psy526 62 RSRAAFSHAQVYELEKRFNA------QKYLSGPERADVAKSLK--LTETQVKIWFQ 109 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~------~~~Ps~~~r~~LA~~l~--L~~~~V~vWFq 109 (274)
+.-..++.+++..|+..|.. +.+.+..+...+...+| ++...|+.+|.
T Consensus 7 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp TGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34567899999999999863 55788888888888877 45556666654
No 161
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=27.88 E-value=22 Score=23.86 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCcccchhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
..+||..+|++...|.-|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998876
No 162
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=27.74 E-value=23 Score=23.43 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcccchhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
..+||..+|++...|.-|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998764
No 163
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=27.15 E-value=33 Score=26.93 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
..-++.....|.+..|-. -...+||+..|+++..|-..|.|+-
T Consensus 20 ~~Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 20 DRISTVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHH
Confidence 344556666688887644 4467789999999999999999973
No 164
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=27.09 E-value=25 Score=24.41 Aligned_cols=23 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCcccchhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
..+||+.+|++...|.-|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998876
No 165
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=26.90 E-value=13 Score=30.41 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
++..+..+|.-.|. ......+||..+|++...|+.+...-|.|.
T Consensus 199 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 199 LDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp -------------------------------------------------
T ss_pred CCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 55666666665543 334567899999999999999986655443
No 166
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=26.79 E-value=32 Score=26.69 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
.-+......|.+..|-.. ...+||+..|+++..|-.+|.|+-.
T Consensus 21 ~Il~aa~~l~~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 21 QLMEIALEVFARRGIGRG-GHADIAEIAQVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHHHHSCCSSC-CHHHHHHHHTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHhcCcccc-cHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 345555666888876544 3667899999999999999999743
No 167
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=26.74 E-value=27 Score=27.15 Aligned_cols=44 Identities=5% Similarity=-0.067 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
..-+..-...|.+..|- -...+||+..|+++..|-..|.|+..=
T Consensus 12 ~~Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L 55 (190)
T 3jsj_A 12 ERLLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDEL 55 (190)
T ss_dssp HHHHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 45566667778888877 678889999999999999999998544
No 168
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=26.62 E-value=35 Score=26.88 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
.-++.-.+.|.+..| . -...+||+..|+++..|-.+|.|+.
T Consensus 17 ~Il~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 17 RVLEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 345555667889998 5 6888999999999999999999873
No 169
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=26.00 E-value=30 Score=23.77 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 170
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=25.98 E-value=36 Score=26.12 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..-+......|.+..|-. -...+||++.|+++..+-.+|.|+..
T Consensus 12 ~~Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 12 QAILETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp HHHHHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 345666677788887654 44677899999999999999999854
No 171
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=25.89 E-value=74 Score=26.71 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=31.0
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
..+|..++++|.-... . ....+||..||++++.|+.-..|-+.|.
T Consensus 174 ~~Lt~re~~vl~~~~~--G----~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 174 VRLTARETEMLKWTAV--G----KTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp CCCCHHHHHHHHHHHT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--C----CCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 4466666666655421 1 2356899999999999998887766553
No 172
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=25.81 E-value=49 Score=25.98 Aligned_cols=42 Identities=14% Similarity=0.306 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
.-++.....|.+..|-.. ...+||+..|+++..|-.+|.|+-
T Consensus 18 ~Il~aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~yF~sKe 59 (203)
T 3ccy_A 18 TIIERAAAMFARQGYSET-SIGDIARACECSKSRLYHYFDSKE 59 (203)
T ss_dssp HHHHHHHHHHHHTCTTTS-CHHHHHHHTTCCGGGGTTTCSCHH
T ss_pred HHHHHHHHHHHHcCcccC-CHHHHHHHhCCCcCeeeeeeCCHH
Confidence 445666677888887544 466789999999999999999874
No 173
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=25.76 E-value=69 Score=21.35 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=33.3
Q ss_pred CcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Ccccchhhhh
Q psy526 65 AAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKL--TETQVKIWFQ 109 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L--~~~~V~vWFq 109 (274)
..++.+++..|+..|.. +.+.+..+...+...+|+ +...|..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45889999999999964 457888888888887774 4555655553
No 174
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=25.65 E-value=52 Score=22.19 Aligned_cols=42 Identities=2% Similarity=0.073 Sum_probs=33.1
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..++.+.+..+...... ...+||..+|++...|.-|-.+++.
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 46888888888766432 3578999999999999999887653
No 175
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.34 E-value=64 Score=23.35 Aligned_cols=45 Identities=4% Similarity=-0.098 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCC-------Ccccchhhhhh
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL-------TETQVKIWFQN 110 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L-------~~~~V~vWFqN 110 (274)
.++.++...+......++..+..++.....+.|+ +...|..|++.
T Consensus 75 ~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 75 IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp SSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 5677777778777776666665544432222274 67788888753
No 176
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=24.85 E-value=31 Score=25.65 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=35.2
Q ss_pred CCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccchhhhh
Q psy526 64 RAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~~~~V~vWFq 109 (274)
...++.+++..|++.|.. +.+.+..+...+...+|++...|+-+|.
T Consensus 13 ~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 13 PWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445777788888888863 4578888888887888998888877764
No 177
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=24.64 E-value=22 Score=27.74 Aligned_cols=44 Identities=5% Similarity=0.166 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
.-+......|.+..|-. -...+||+..|+++..|-.+|.|+-.=
T Consensus 18 ~Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (203)
T 3f1b_A 18 QMLDAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKDEL 61 (203)
T ss_dssp HHHHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHHHH
Confidence 34455556687777643 456778999999999999999998543
No 178
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=24.62 E-value=43 Score=26.19 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..-++.....|.+..|-... ..+||+..|+++..|-..|.|+..
T Consensus 19 ~~Il~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (213)
T 2qtq_A 19 DLLLQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNKAG 62 (213)
T ss_dssp HHHHHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCHHH
Confidence 34456666778887765444 667899999999999999999744
No 179
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=24.31 E-value=29 Score=26.80 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..-+..-...|.+..|-. -...+||+..|+++..|-.+|.|+..
T Consensus 15 ~~Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 15 RVLLARAESTLEKDGVDG-LSLRQLAREAGVSHAAPSKHFRDRQA 58 (199)
T ss_dssp HHHHHHHHHHHHHHCGGG-CCHHHHHHHTC-----CCCSSSSHHH
T ss_pred HHHHHHHHHHHHhcChhh-hhHHHHHHHhCCChHHHHHHhCCHHH
Confidence 345556666687777543 34667999999999999999999743
No 180
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=24.23 E-value=26 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSETA 41 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988653
No 181
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.21 E-value=25 Score=28.64 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..-+..-...|.+..|-. -...+||+..|+++..|-..|.|+-.
T Consensus 19 ~~il~aA~~l~~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~~K~~ 62 (216)
T 2oi8_A 19 AEIKDHAWEQIATAGASA-LSLNAIAKRMGMSGPALYRYFDGRDE 62 (216)
T ss_dssp HHHHHHHHHHHHHHCTTS-CCHHHHHHHTTCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344555566688777644 44667899999999999999999843
No 182
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=24.15 E-value=29 Score=23.58 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999987653
No 183
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.06 E-value=32 Score=28.95 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=37.3
Q ss_pred CCCCcCCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 62 RSRAAFSHAQ-VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 62 R~RT~ft~~Q-l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
+.|...+.++ +..-.+.|....|-. -...+||+++|+++..|-..|.||-.=..-
T Consensus 14 ~~r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~a 69 (243)
T 2g7l_A 14 PAKPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTAELHAA 69 (243)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHHHHHHH
Confidence 3344555544 455566677777644 446678999999999999999996544333
No 184
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.04 E-value=82 Score=24.03 Aligned_cols=41 Identities=10% Similarity=0.138 Sum_probs=30.5
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhh
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqN 110 (274)
..++.++....-..+. ..+ -..+||..+|++...|..|++.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 3578877776666664 332 3567899999999999999854
No 185
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=23.95 E-value=81 Score=23.72 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Ccccchhhh
Q psy526 60 KKRSRAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKL--TETQVKIWF 108 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L--~~~~V~vWF 108 (274)
.++.+..++.+++..|+..|.. +.+.+..+...+...+|+ +...|...|
T Consensus 15 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp -----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3456788999999999999964 457888888887777775 334444433
No 186
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=23.82 E-value=21 Score=29.20 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
.-++...+.|.+..| ..-...+||++.|+++..|-.+|.|+-.=
T Consensus 17 ~Il~AA~~l~~~~G~-~~~tv~~IA~~agvs~~t~Y~~F~sK~~L 60 (231)
T 2qib_A 17 QLIGVALDLFSRRSP-DEVSIDEIASAAGISRPLVYHYFPGKLSL 60 (231)
T ss_dssp HHHHHHHHHHHHSCG-GGCCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHcCc-hhcCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 345556667888876 44456778999999999999999997543
No 187
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=23.75 E-value=29 Score=28.39 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCCcCCHH-HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 63 SRAAFSHA-QVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 63 ~RT~ft~~-Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
.|...+.+ -+......|....|- .-...+||..+|+++..|-.+|.|+..=..
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 34444554 345556667777653 344677899999999999999998755433
No 188
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=23.59 E-value=29 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|-.+++.
T Consensus 30 q~elA~~~gis~~~is~~e~g~~~ 53 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAERR 53 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCC
Confidence 467999999999999999988753
No 189
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=23.49 E-value=31 Score=24.31 Aligned_cols=23 Identities=4% Similarity=0.237 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCcccchhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
..+||..+|++...|.-|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999998865
No 190
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=23.47 E-value=84 Score=21.32 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Ccccchhhh
Q psy526 64 RAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKL--TETQVKIWF 108 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L--~~~~V~vWF 108 (274)
...++..++..|...|.. +.+.+..+...+...+|+ +...|..+|
T Consensus 11 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 62 (90)
T 1avs_A 11 RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAII 62 (90)
T ss_dssp HHHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 335899999999999963 557888888888888874 455666655
No 191
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=23.40 E-value=28 Score=28.73 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 71 QVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 71 Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
-+......|.+..|-. ....+||+..|+++..|-.+|.|+-.
T Consensus 28 Il~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~ 69 (231)
T 2zcx_A 28 ILDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETREQ 69 (231)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHH
Confidence 4555666788887654 44667899999999999999999843
No 192
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=23.26 E-value=47 Score=18.99 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHH
Q psy526 109 QNRRYKTKRKQLQL 122 (274)
Q Consensus 109 qNrR~k~Kr~~~~~ 122 (274)
.|||-+|++.+.+.
T Consensus 7 RnRRRRWR~Rq~qi 20 (26)
T 1etf_B 7 RNRRRRWRERQRAA 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 58999998877664
No 193
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.12 E-value=48 Score=26.29 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCc
Q psy526 64 RAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLTE 101 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~~ 101 (274)
++.||.+|+..|+..|.. +.+.+..+...+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 467899999999999963 55888988888888887654
No 194
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=23.08 E-value=69 Score=21.46 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhC-CCcccchhhhh
Q psy526 66 AFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLK-LTETQVKIWFQ 109 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~-L~~~~V~vWFq 109 (274)
.++.+++..|+..|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4788889999999863 45778888888777776 45555555553
No 195
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=22.97 E-value=35 Score=28.37 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCcccchhhhhhhhh
Q psy526 89 ERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 89 ~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
...+||+.+|++...|.-|..+++.
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~~ 56 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGINA 56 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3567899999999999999987553
No 196
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=22.93 E-value=32 Score=26.57 Aligned_cols=44 Identities=5% Similarity=0.066 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..-+....+.|.+..|-.. ...+||+..|+++..|-.+|.|+-.
T Consensus 13 ~~Il~aa~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 13 QHLLDTGYRIMAVKGFSGV-GLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHHHCCcccC-CHHHHHHHhCCChhhHHHHcCCHHH
Confidence 3446666677888776543 3567899999999999999999854
No 197
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.81 E-value=1.2e+02 Score=22.27 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=34.8
Q ss_pred CCCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Ccccchhhh
Q psy526 62 RSRAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKL--TETQVKIWF 108 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L--~~~~V~vWF 108 (274)
..++.++..++..|+..|.. +.+.+..+...+...+|+ +...|+..|
T Consensus 12 ~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 12 PLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34677999999999999974 457888888888777764 444555444
No 198
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.81 E-value=24 Score=28.11 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
.-++.-...|.+..|- .....+||+..|+++..|-.+|.|+..
T Consensus 13 ~Il~AA~~lf~~~G~~-~~s~~~IA~~AGvs~gtlY~~F~sKe~ 55 (203)
T 2np5_A 13 RLAAALFDVAAESGLE-GASVREVAKRAGVSIGAVQHHFSTKDE 55 (203)
T ss_dssp HHHHHHHHHHHHHCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHhChh-hccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3456666678887764 344667899999999999999999754
No 199
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=22.79 E-value=33 Score=26.90 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=23.9
Q ss_pred HHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 78 RFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 78 ~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
.|.+..|-. -...+||++.|+++..|-.+|.|+-.
T Consensus 37 lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 37 LESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHC-------CCHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHH
Confidence 456555543 44677899999999999999999844
No 200
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=22.40 E-value=1.4e+02 Score=22.41 Aligned_cols=45 Identities=4% Similarity=0.236 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC---Ccccchhhhhh
Q psy526 66 AFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKL---TETQVKIWFQN 110 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L---~~~~V~vWFqN 110 (274)
.++..++..|...|.. +.+.+..+...+...+|+ +...|..+|.+
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5788999999999963 567889998888888876 55566666643
No 201
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=22.13 E-value=1.2e+02 Score=22.33 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=35.2
Q ss_pred CcCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCcccchhhh
Q psy526 65 AAFSHAQVYELEKRFNA----QKYLSGPERADVAKSLKLTETQVKIWF 108 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~----~~~Ps~~~r~~LA~~l~L~~~~V~vWF 108 (274)
..++.+++..++..|.. +.+.+..+...+-..+|++...|...|
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 45788999999999964 557888888888888899887776655
No 202
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=22.12 E-value=18 Score=30.03 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
.-++...+.|.+..|-. -...+||+..|+++..|-.+|.|+-.=
T Consensus 50 ~Il~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~L 93 (245)
T 3aqt_A 50 RLITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQL 93 (245)
T ss_dssp HHHHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHH
T ss_pred HHHHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 34555666687777643 446778999999999999999997543
No 203
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=22.07 E-value=36 Score=26.87 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
.-+......|.+..|-.. ...+||+..|+++..|-.+|.|+..
T Consensus 21 ~Il~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~ 63 (218)
T 3gzi_A 21 KLILAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEK 63 (218)
T ss_dssp HHHHHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344555666888887544 4667899999999999999999843
No 204
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=22.01 E-value=22 Score=27.97 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
.-++.....|.+..|- .-...+||++.|+++..|-.+|.|+..=
T Consensus 22 ~Il~aa~~l~~~~G~~-~~s~~~Ia~~agvs~~t~Y~~F~sK~~L 65 (212)
T 1pb6_A 22 AILSAALDTFSQFGFH-GTRLEQIAELAGVSKTNLLYYFPSKEAL 65 (212)
T ss_dssp HHHHHHHHHHHHHCTT-TCCHHHHHHHTTSCHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHHHHcCcc-hhhHHHHHHHHCCChhHHHHhCCCHHHH
Confidence 4455556668777763 4456778999999999999999997443
No 205
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=21.90 E-value=31 Score=27.09 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
.-+......|.+..|-. -...+||+..|+++..|-.+|.|+-.=.
T Consensus 16 ~Il~aA~~lf~e~G~~~-~t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 16 AILSASYELLLESGFKA-VTVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 34555566688877654 3467789999999999999999865443
No 206
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=21.66 E-value=28 Score=26.99 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
..-+....+.|.+..|- .-...+||++.|+++..|-.+|.|+..=..
T Consensus 11 ~~Il~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (206)
T 3dew_A 11 SRLMEVATELFAQKGFY-GVSIRELAQAAGASISMISYHFGGKEGLYA 57 (206)
T ss_dssp HHHHHHHHHHHHHHCGG-GCCHHHHHHHHTCCHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcc-cCcHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 34455666667777653 344667899999999999999999754433
No 207
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.44 E-value=1.3e+02 Score=19.90 Aligned_cols=50 Identities=8% Similarity=0.155 Sum_probs=33.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCC-C-cccchhhhhhhh
Q psy526 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKL-T-ETQVKIWFQNRR 112 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L-~-~~~V~vWFqNrR 112 (274)
+.|+....+|.++...++..|...+ . .-..||..|.- + ..+|+-|+.+++
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 3445677899999999999998755 2 33456666542 2 345666766544
No 208
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=21.27 E-value=34 Score=24.62 Aligned_cols=25 Identities=4% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCcccchhhhhhhhh
Q psy526 89 ERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 89 ~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
...+||..+|++...|.-|..+++-
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~~ 63 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNENV 63 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCc
Confidence 3567999999999999999998764
No 209
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=21.22 E-value=1e+02 Score=22.77 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=33.3
Q ss_pred CCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Ccccchhhh
Q psy526 63 SRAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKL--TETQVKIWF 108 (274)
Q Consensus 63 ~RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L--~~~~V~vWF 108 (274)
+++.++..++..|...|.. +.+.+..+...+...+|+ +...|...|
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 58 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4678999999999999973 457888888887777764 334444444
No 210
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=21.10 E-value=33 Score=26.88 Aligned_cols=44 Identities=5% Similarity=-0.037 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..-+......|.+..|- .-...+||+..|+++..|-.+|.|+..
T Consensus 12 ~~Il~aa~~l~~~~G~~-~~ti~~IA~~agvs~~t~Y~~F~sK~~ 55 (193)
T 2dg8_A 12 ERILAATLDLIAEEGIA-RVSHRRIAQRAGVPLGSMTYHFTGIEQ 55 (193)
T ss_dssp HHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHhChh-hccHHHHHHHhCCCchhhheeCCCHHH
Confidence 34556666678887763 344677899999999999999999843
No 211
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=21.09 E-value=35 Score=23.75 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999988643
No 212
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.99 E-value=32 Score=22.77 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCcccchhhh
Q psy526 89 ERADVAKSLKLTETQVKIWF 108 (274)
Q Consensus 89 ~r~~LA~~l~L~~~~V~vWF 108 (274)
...+||+.+|++...|.-|.
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 35789999999999999998
No 213
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=20.88 E-value=40 Score=22.69 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCcccchhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqN 110 (274)
..++|..||++...|+.|-++
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 567999999999999999654
No 214
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=20.72 E-value=36 Score=23.16 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcccchhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
..+||..+|++...|.-|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56799999999999999998764
No 215
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.67 E-value=64 Score=25.47 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
..-++.-...|.+..|-. ....+||+..|+++..|-.+|.|+..=
T Consensus 14 ~~Il~aA~~lF~~~Gy~~-ts~~~IA~~aGvsk~tlY~~F~sKe~L 58 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEG-TSITDLTKALGINPPSLYAAFGSKRDL 58 (202)
T ss_dssp HHHHHHHHHHHHHHTTTT-CCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHHHhCccc-CCHHHHHHHhCCChHHHHHHhCCHHHH
Confidence 445666677788888754 346778999999999999999987543
No 216
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.54 E-value=62 Score=24.39 Aligned_cols=40 Identities=3% Similarity=0.047 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
++.+++..|.+... -...+||..+|++...|.-|-.+++.
T Consensus 71 ~~~~~l~~~R~~~g-------lsq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 71 VAPEFIVKVRKKLS-------LTQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp CCHHHHHHHHHHTT-------CCHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcC-------CCHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 44555555544332 22457899999999999999888653
No 217
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=20.40 E-value=37 Score=23.27 Aligned_cols=21 Identities=10% Similarity=0.128 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCcccchhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqN 110 (274)
..+||..+|++...|.-|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999988
No 218
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=20.36 E-value=66 Score=20.90 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Ccccchhhh
Q psy526 67 FSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKL--TETQVKIWF 108 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L--~~~~V~vWF 108 (274)
++..++..|...|.. +.+.+..+...+...+|. +...|+.+|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 467788888888853 457788888888777775 344455444
No 219
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=20.31 E-value=25 Score=27.47 Aligned_cols=46 Identities=9% Similarity=-0.019 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 71 QVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 71 Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
-++.-...|.+..|-. -...+||+..|+++..|-.+|.++-.=..-
T Consensus 22 Il~aa~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 67 (208)
T 3cwr_A 22 IVGAAQRLLSSGGAAA-MTMEGVASEAGIAKKTLYRFASGRADLIGL 67 (208)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHcCHHh-ccHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 3445555677776543 346678999999999999999996554433
No 220
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=20.11 E-value=39 Score=23.60 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|..+++.
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999988753
No 221
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=20.10 E-value=75 Score=25.07 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
+|..+.++|+-... . ....+||..++++.+.|++...|-|.|..
T Consensus 143 Lt~rE~~vl~~l~~--g----~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 143 LTGREQQVLQLTIR--G----LMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp SCHHHHHHHHHHTT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHc--C----CcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 55556666654422 1 13467899999999999988777776643
No 222
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=20.02 E-value=25 Score=27.45 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
.-+....+.|.+..|- .-...+||+..|+++..|-.+|.|+-.
T Consensus 16 ~Il~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (202)
T 3lwj_A 16 KILTCSLDLFIEKGYY-NTSIRDIIALSEVGTGTFYNYFVDKED 58 (202)
T ss_dssp HHHHHHHHHHHHHCTT-TCCHHHHHHHHCSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHcCcc-cCCHHHHHHHhCCCchhHHHHcCCHHH
Confidence 3455566668887763 345677899999999999999999743
No 223
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.01 E-value=42 Score=26.41 Aligned_cols=44 Identities=11% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 69 HAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 69 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..-+......|.+..|-.. ...+||...|+++..|-..|.|+..
T Consensus 14 ~~Il~aA~~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~ 57 (216)
T 3f0c_A 14 ELIINAAQKRFAHYGLCKT-TMNEIASDVGMGKASLYYYFPDKET 57 (216)
T ss_dssp HHHHHHHHHHHHHHCSSSC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHcCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3445666667888886443 4567899999999999999999744
Done!