Query psy526
Match_columns 274
No_of_seqs 304 out of 1515
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 21:50:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy526.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/526hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2craa1 a.4.1.1 (A:7-64) Homeo 99.9 1.7E-22 1.2E-26 141.3 5.4 57 61-117 2-58 (58)
2 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 99.9 4.1E-22 3E-26 139.3 6.9 57 61-117 1-57 (58)
3 d1zq3p1 a.4.1.1 (P:2-68) Homeo 99.8 4E-22 2.9E-26 143.3 6.6 61 61-121 2-62 (67)
4 d1fjla_ a.4.1.1 (A:) Paired pr 99.8 9.6E-22 7E-26 140.4 7.9 63 59-121 1-63 (65)
5 d1pufa_ a.4.1.1 (A:) Homeobox 99.8 1.5E-21 1.1E-25 143.9 9.0 65 58-122 11-75 (77)
6 d1jgga_ a.4.1.1 (A:) Even-skip 99.8 1.1E-21 7.9E-26 136.7 6.7 56 62-117 1-56 (57)
7 d2e1oa1 a.4.1.1 (A:8-64) Homeo 99.8 1.3E-21 9.3E-26 136.3 6.8 57 61-117 1-57 (57)
8 d9anta_ a.4.1.1 (A:) Antennape 99.8 1.4E-21 1E-25 135.4 6.3 55 64-118 1-55 (56)
9 d2cuea1 a.4.1.1 (A:7-74) Paire 99.8 3.5E-21 2.5E-25 138.7 7.9 62 61-122 2-63 (68)
10 d1b72a_ a.4.1.1 (A:) Homeobox 99.8 1.8E-21 1.3E-25 146.8 5.8 62 58-119 25-86 (88)
11 d1vnda_ a.4.1.1 (A:) VND/NK-2 99.8 1.1E-21 8.3E-26 144.5 4.1 64 55-118 4-67 (77)
12 d1ftta_ a.4.1.1 (A:) Thyroid t 99.8 4.2E-21 3E-25 138.3 7.0 59 60-118 2-60 (68)
13 d1p7ia_ a.4.1.1 (A:) Engrailed 99.8 2.9E-21 2.1E-25 132.6 5.7 53 62-114 1-53 (53)
14 d1yz8p1 a.4.1.1 (P:1-60) Pitui 99.8 1.9E-21 1.4E-25 136.8 4.6 59 60-118 1-59 (60)
15 d1uhsa_ a.4.1.1 (A:) Homeodoma 99.8 1.2E-20 9.1E-25 137.1 7.2 59 61-119 2-61 (72)
16 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 99.8 5.8E-21 4.2E-25 137.1 5.3 60 58-117 6-65 (67)
17 d1bw5a_ a.4.1.1 (A:) Insulin g 99.8 1.2E-20 9E-25 135.0 5.4 60 59-118 2-61 (66)
18 d1au7a1 a.4.1.1 (A:103-160) Pi 99.8 2.3E-20 1.7E-24 130.3 5.4 57 62-118 1-57 (58)
19 d2cufa1 a.4.1.1 (A:8-89) Homeo 99.8 5.1E-20 3.7E-24 137.2 6.6 60 61-120 1-75 (82)
20 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 99.8 7.6E-20 5.6E-24 135.6 5.8 62 56-117 13-78 (80)
21 d1e3oc1 a.4.1.1 (C:104-160) Oc 99.8 1.1E-19 8E-24 126.3 5.6 55 63-117 1-55 (57)
22 d1le8a_ a.4.1.1 (A:) Mating ty 99.8 1.1E-19 7.7E-24 124.6 4.9 53 64-116 1-53 (53)
23 d1wi3a_ a.4.1.1 (A:) DNA-bindi 99.8 1.2E-19 8.6E-24 131.6 5.3 59 59-117 6-65 (71)
24 d1s7ea1 a.4.1.1 (A:103-152) He 99.7 8.6E-19 6.2E-23 118.6 4.0 50 63-112 1-50 (50)
25 d2ecca1 a.4.1.1 (A:1-76) Homeo 99.7 2.3E-18 1.7E-22 126.3 6.1 56 64-119 7-62 (76)
26 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 99.7 5.3E-18 3.9E-22 123.4 6.9 58 61-118 2-62 (73)
27 d2ecba1 a.4.1.1 (A:8-83) Zinc 99.7 2.3E-18 1.7E-22 126.3 4.3 52 67-118 11-62 (76)
28 d1x2ma1 a.4.1.1 (A:8-59) Lag1 99.6 1.5E-17 1.1E-21 113.2 2.7 50 68-117 1-51 (52)
29 d1lfba_ a.4.1.1 (A:) Hepatocyt 99.6 1.6E-17 1.2E-21 122.2 2.5 55 64-118 1-76 (78)
30 d1k61a_ a.4.1.1 (A:) mat alpha 99.6 1.1E-16 8.3E-21 112.0 6.2 51 67-117 5-58 (60)
31 d1x2na1 a.4.1.1 (A:6-67) Homeo 99.6 3E-16 2.2E-20 110.5 7.1 56 61-116 3-61 (62)
32 d2cqxa1 a.4.1.1 (A:8-66) LAG1 99.6 5.1E-17 3.7E-21 113.4 2.7 55 62-116 3-58 (59)
33 d1e3oc2 a.35.1.1 (C:1-75) Oct- 97.3 6.2E-06 4.5E-10 58.1 -2.5 27 12-38 35-61 (75)
34 d1au7a2 a.35.1.1 (A:5-76) Pit- 97.2 6.9E-06 5E-10 57.4 -2.4 27 12-38 31-57 (72)
35 d1hlva1 a.4.1.7 (A:1-66) DNA-b 92.3 0.13 9.7E-06 34.7 5.6 46 64-112 5-50 (66)
36 d1iufa1 a.4.1.7 (A:-2-75) Ars- 79.3 1 7.3E-05 31.0 3.9 32 61-92 6-38 (78)
37 d1rp3a2 a.4.13.2 (A:164-234) S 75.7 2.1 0.00015 27.7 4.8 48 66-118 21-68 (71)
38 d1or7a1 a.4.13.2 (A:120-187) S 75.6 2.3 0.00016 27.6 4.9 47 67-118 19-65 (68)
39 d1ijwc_ a.4.1.2 (C:) HIN recom 74.7 2.4 0.00018 26.2 4.5 40 65-109 4-43 (47)
40 d1avsa_ a.39.1.5 (A:) Troponin 55.5 4.3 0.00031 27.1 3.1 47 62-108 3-56 (81)
41 d2pq3a1 a.39.1.5 (A:3-75) Calm 55.0 4.7 0.00034 26.2 3.2 43 67-109 2-51 (73)
42 d1ku3a_ a.4.13.2 (A:) Sigma70 52.4 6.3 0.00046 25.4 3.4 40 66-106 8-47 (61)
43 d1f54a_ a.39.1.5 (A:) Calmodul 51.8 6.8 0.0005 25.5 3.7 45 65-109 2-53 (77)
44 d1fsea_ a.4.6.2 (A:) Germinati 50.0 12 0.00085 23.9 4.6 45 64-114 2-46 (67)
45 d2jn6a1 a.4.1.19 (A:1-89) Unch 48.3 6.9 0.0005 26.6 3.3 43 64-109 3-45 (89)
46 d1bl0a1 a.4.1.8 (A:9-62) MarA 41.9 3.5 0.00026 25.3 0.7 32 79-110 11-42 (54)
47 d1l3la1 a.4.6.2 (A:170-234) Qu 40.1 19 0.0014 22.7 4.4 44 66-115 4-47 (65)
48 d1c07a_ a.39.1.6 (A:) Eps15 {H 38.0 12 0.00089 25.4 3.3 44 66-109 3-51 (95)
49 d1p4wa_ a.4.6.2 (A:) Transcrip 38.0 37 0.0027 22.6 5.9 45 65-115 21-65 (87)
50 d1wrka1 a.39.1.5 (A:4-85) Trop 37.7 23 0.0017 23.3 4.7 44 66-109 8-59 (82)
51 d2auwa1 a.35.1.10 (A:88-154) H 37.7 9.1 0.00066 25.1 2.4 39 68-113 2-40 (67)
52 d1a04a1 a.4.6.2 (A:150-216) Ni 35.8 30 0.0022 21.8 4.9 44 65-114 5-48 (67)
53 d2hkua1 a.4.1.9 (A:18-87) Puta 35.1 10 0.00073 24.5 2.3 40 72-113 7-46 (70)
54 d1rp3a1 a.4.13.1 (A:87-163) Si 33.9 19 0.0014 23.4 3.7 28 82-112 24-51 (77)
55 d2p7vb1 a.4.13.2 (B:546-613) S 33.6 15 0.0011 23.9 3.0 40 66-106 5-44 (68)
56 d1ttya_ a.4.13.2 (A:) Sigma70 33.2 14 0.001 25.4 2.9 40 66-106 18-57 (87)
57 d2cpra1 a.60.8.4 (A:483-595) E 33.1 26 0.0019 24.6 4.5 33 62-102 15-47 (113)
58 d2cqra1 a.4.1.3 (A:7-66) DnaJ 32.6 46 0.0033 20.5 5.3 40 59-98 7-46 (60)
59 d1irza_ a.4.1.11 (A:) Arr10-B 30.3 54 0.0039 20.9 5.4 58 60-117 3-62 (64)
60 d1fi6a_ a.39.1.6 (A:) Reps1 {M 30.1 21 0.0016 23.9 3.5 43 66-108 2-49 (92)
61 d1yioa1 a.4.6.2 (A:131-200) Re 29.7 34 0.0025 21.8 4.3 43 66-114 12-54 (70)
62 d1s7oa_ a.4.13.3 (A:) Hypothet 28.0 42 0.0031 23.5 4.9 46 67-117 17-62 (106)
63 d2g7la1 a.4.1.9 (A:16-83) Puta 27.8 14 0.001 23.6 1.9 44 72-116 10-53 (68)
64 d2iu5a1 a.4.1.9 (A:1-71) Trans 27.3 18 0.0013 23.0 2.5 42 70-112 10-51 (71)
65 d1y9qa1 a.35.1.8 (A:4-82) Prob 26.6 11 0.00079 24.6 1.3 24 90-113 24-47 (79)
66 d2croa_ a.35.1.2 (A:) cro 434 26.1 11 0.00083 23.6 1.2 25 90-114 19-43 (65)
67 d1j9ia_ a.6.1.5 (A:) Terminase 25.6 13 0.00097 24.5 1.5 19 90-108 5-23 (68)
68 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 25.1 60 0.0044 20.3 4.8 40 66-105 3-42 (59)
69 d2fq4a1 a.4.1.9 (A:9-77) Trans 24.8 18 0.0013 23.0 2.0 44 71-115 9-52 (69)
70 d1r69a_ a.35.1.2 (A:) 434 C1 r 24.2 13 0.00097 23.1 1.3 23 90-112 17-39 (63)
71 d1y7ya1 a.35.1.3 (A:5-73) Rest 23.8 14 0.001 23.5 1.3 25 89-113 24-48 (69)
72 d1utxa_ a.35.1.3 (A:) Putative 23.2 14 0.001 23.3 1.3 24 90-113 17-40 (66)
73 d1b0na2 a.35.1.3 (A:1-68) SinR 23.1 14 0.001 23.3 1.3 24 90-113 17-40 (68)
74 d2p8ta1 a.4.5.72 (A:14-82) Hyp 22.7 15 0.0011 24.3 1.3 31 74-107 7-37 (69)
75 d2r1jl1 a.35.1.2 (L:3-68) P22 22.2 16 0.0011 22.9 1.3 24 90-113 19-42 (66)
76 d2fd5a1 a.4.1.9 (A:1-76) Proba 21.2 40 0.0029 21.4 3.4 43 70-113 11-53 (76)
No 1
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85 E-value=1.7e-22 Score=141.28 Aligned_cols=57 Identities=37% Similarity=0.743 Sum_probs=55.2
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
||+||.||.+|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR~k~kk 58 (58)
T d2craa1 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58 (58)
T ss_dssp CCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCHHHeeecccchhhhccC
Confidence 677999999999999999999999999999999999999999999999999999885
No 2
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.85 E-value=4.1e-22 Score=139.29 Aligned_cols=57 Identities=56% Similarity=0.894 Sum_probs=55.6
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
||+||.|+.+|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 57 (58)
T d1ig7a_ 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhheeecCcchHhHhcc
Confidence 578999999999999999999999999999999999999999999999999999997
No 3
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.85 E-value=4e-22 Score=143.25 Aligned_cols=61 Identities=43% Similarity=0.732 Sum_probs=58.0
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQ 121 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~ 121 (274)
||+||.||.+|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+||...+
T Consensus 2 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~k~kk~~~~ 62 (67)
T d1zq3p1 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 62 (67)
T ss_dssp SCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccceeeccccHHHhHhhhhhh
Confidence 6789999999999999999999999999999999999999999999999999999986544
No 4
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.85 E-value=9.6e-22 Score=140.45 Aligned_cols=63 Identities=35% Similarity=0.672 Sum_probs=59.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHH
Q psy526 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQ 121 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~ 121 (274)
|+||.||.|+.+|+.+||.+|..++||+..++++||..|||++.+|+|||||||+|+||....
T Consensus 1 k~rr~Rt~ft~~Q~~~Le~~F~~n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk~~~~ 63 (65)
T d1fjla_ 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 63 (65)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhCCCHHHhhHhhhhHHHHHHhcccc
Confidence 578899999999999999999999999999999999999999999999999999999987643
No 5
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.85 E-value=1.5e-21 Score=143.88 Aligned_cols=65 Identities=43% Similarity=0.652 Sum_probs=60.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~~ 122 (274)
+.+||+||.|+.+|+.+||.+|..++||+..+|++||..|||++++|+|||||||+|+||..+..
T Consensus 11 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~~~~ 75 (77)
T d1pufa_ 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHhhhhhhhhHHHHHHHHHHh
Confidence 34577899999999999999999999999999999999999999999999999999999976543
No 6
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.84 E-value=1.1e-21 Score=136.65 Aligned_cols=56 Identities=48% Similarity=0.840 Sum_probs=54.8
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
|.||.||..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||
T Consensus 1 R~Rt~fT~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~kk 56 (57)
T d1jgga_ 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56 (57)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhHhhhcchhhhhhhhc
Confidence 67999999999999999999999999999999999999999999999999999997
No 7
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84 E-value=1.3e-21 Score=136.29 Aligned_cols=57 Identities=58% Similarity=0.853 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
|+.||.||..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||
T Consensus 1 k~~R~~ft~~Q~~~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~k~kk 57 (57)
T d2e1oa1 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57 (57)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHhhhhhhhhccC
Confidence 578999999999999999999999999999999999999999999999999999986
No 8
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.83 E-value=1.4e-21 Score=135.43 Aligned_cols=55 Identities=47% Similarity=0.807 Sum_probs=53.7
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
||.||.+|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||+
T Consensus 1 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRak~kk~ 55 (56)
T d9anta_ 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55 (56)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhHeeeccccchhhhhhc
Confidence 8999999999999999999999999999999999999999999999999999984
No 9
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.83 E-value=3.5e-21 Score=138.67 Aligned_cols=62 Identities=32% Similarity=0.591 Sum_probs=58.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQL 122 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~~~~ 122 (274)
||+||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||+|+|+|+.....
T Consensus 2 rR~Rt~ft~~Ql~~Le~~F~~n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kr~~~~~ 63 (68)
T d2cuea1 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 63 (68)
T ss_dssp CCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcChhheeecCcchhHHHHhhhhhh
Confidence 57799999999999999999999999999999999999999999999999999999876544
No 10
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.83 E-value=1.8e-21 Score=146.85 Aligned_cols=62 Identities=50% Similarity=0.806 Sum_probs=55.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
+++||.||.||..|+.+||.+|..++||+..+|++||..|||++++|+|||||||+|+||..
T Consensus 25 ~~~kr~Rt~ft~~Ql~~Le~~F~~n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR~k~Kk~~ 86 (88)
T d1b72a_ 25 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCHHHeeeccHhHHHHHHHhc
Confidence 45678899999999999999999999999999999999999999999999999999999865
No 11
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.83 E-value=1.1e-21 Score=144.54 Aligned_cols=64 Identities=56% Similarity=0.930 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 55 ~~~~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
+...++||.||.||.+|+.+||.+|..++||+..++++||..|||++++|+|||||||+|+||.
T Consensus 4 g~p~k~rr~Rt~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 67 (77)
T d1vnda_ 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCSSSSCSSCCCCCTTHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHSSSSCSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhhhhhcchhHHHHHHHH
Confidence 3446778899999999999999999999999999999999999999999999999999999874
No 12
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.82 E-value=4.2e-21 Score=138.25 Aligned_cols=59 Identities=63% Similarity=1.027 Sum_probs=57.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
+||.||.||..|+.+||+.|..++||+..+|.+||..|||++.+|+|||||||+|+|+.
T Consensus 2 krr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kk~ 60 (68)
T d1ftta_ 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccceeeecccHHHHHhhc
Confidence 57889999999999999999999999999999999999999999999999999999985
No 13
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.82 E-value=2.9e-21 Score=132.58 Aligned_cols=53 Identities=45% Similarity=0.786 Sum_probs=51.7
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
|+||.||.+|+.+||..|..++||+..+|++||..|||++++|+|||||||+|
T Consensus 1 R~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrRaK 53 (53)
T d1p7ia_ 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53 (53)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChHHhhhcccccCCC
Confidence 67999999999999999999999999999999999999999999999999986
No 14
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=1.9e-21 Score=136.78 Aligned_cols=59 Identities=34% Similarity=0.660 Sum_probs=56.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
+||.||.|+.+|+.+||.+|..++||+..++++||..|||++.+|++||+|||+|+||.
T Consensus 1 Qrr~Rt~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr~ 59 (60)
T d1yz8p1 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59 (60)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHCCChHHHHHHhHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999999999999999985
No 15
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.81 E-value=1.2e-20 Score=137.10 Aligned_cols=59 Identities=29% Similarity=0.350 Sum_probs=55.8
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNA-QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~-~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
+|.|+.||.+|+.+||..|.+ ++||+..+|++||..|||++++|+|||||||+|+||..
T Consensus 2 ~~~r~~fT~~Ql~~Le~~F~~~n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak~rk~~ 61 (72)
T d1uhsa_ 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999987 78999999999999999999999999999999999853
No 16
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.81 E-value=5.8e-21 Score=137.11 Aligned_cols=60 Identities=32% Similarity=0.449 Sum_probs=57.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 58 ~k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
..+||+||.|+.+|+.+|+.+|..++||+..++++||..|||++++|+|||||+|+|+||
T Consensus 6 ~~~rr~Rt~~t~~q~~~Le~~F~~n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR~k~Kk 65 (67)
T d1ocpa_ 6 QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65 (67)
T ss_dssp CCSSSCCSSCCHHHHHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSSSS
T ss_pred hccCCCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHHHHcCCHHHHHHHhHHHHHHHhc
Confidence 456788999999999999999999999999999999999999999999999999999987
No 17
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.80 E-value=1.2e-20 Score=134.99 Aligned_cols=60 Identities=22% Similarity=0.450 Sum_probs=57.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
|.+|.||.|+.+|+.+||.+|..|+||+..++++||.++||++++|++||||||+|.|+.
T Consensus 2 k~kR~Rt~~t~~Q~~~Le~~F~~n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR~k~kk~ 61 (66)
T d1bw5a_ 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHCCCCCHHHHHHHHHHcCcCHHHhhhhhHhHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999998874
No 18
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.79 E-value=2.3e-20 Score=130.29 Aligned_cols=57 Identities=33% Similarity=0.509 Sum_probs=55.0
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
|+||.|+.+|+.+||.+|..++||+..++++||..|||++++|+|||||||+|+||.
T Consensus 1 r~Rt~~s~~q~~~Le~~F~~~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kr~ 57 (58)
T d1au7a1 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHhc
Confidence 579999999999999999999999999999999999999999999999999999873
No 19
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=5.1e-20 Score=137.18 Aligned_cols=60 Identities=28% Similarity=0.490 Sum_probs=56.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCcccchhhhhhhhhHHHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK---------------LTETQVKIWFQNRRYKTKRKQL 120 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~---------------L~~~~V~vWFqNrR~k~Kr~~~ 120 (274)
||+||.|+.+|+.+||.+|..++||+..+|++||..+| |++.+|+|||||||+|+||+..
T Consensus 1 Rr~R~~ft~~Ql~~LE~~F~~n~yP~~~~R~~LA~~~~~~~~~~~~~~~~~~~l~~~~V~vWFqNRR~k~kk~~~ 75 (82)
T d2cufa1 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 75 (82)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccccccccchhccCCCHHHHHHHHhhhHHHHHHhhh
Confidence 67899999999999999999999999999999999875 9999999999999999999653
No 20
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.78 E-value=7.6e-20 Score=135.58 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=57.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 56 PTGRKKRSRAAFSHAQVYELEKRFNA----QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 56 ~~~k~rR~RT~ft~~Ql~~Le~~F~~----~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
...++||.||.||.+|+++|+.+|++ ++||+..++++||.+|||++++|+|||||+|++.|+
T Consensus 13 ~~~~~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k~ 78 (80)
T d1wh7a_ 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CccCCCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHeeeecccCcCCCCC
Confidence 34567889999999999999999997 899999999999999999999999999999988764
No 21
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77 E-value=1.1e-19 Score=126.34 Aligned_cols=55 Identities=27% Similarity=0.488 Sum_probs=53.8
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 63 ~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
+||.|+.+|+.+||.+|..++||+..++++||.+|||++++|++||||||+|+||
T Consensus 1 kRT~~~~~q~~~Le~~F~~~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~k~kk 55 (57)
T d1e3oc1 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999999999999999999999999999987
No 22
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.77 E-value=1.1e-19 Score=124.64 Aligned_cols=53 Identities=32% Similarity=0.546 Sum_probs=51.5
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
||.|+.+|+.+||.+|..++||+..++.+||.++||++++|++||||||+|.|
T Consensus 1 Rt~~s~~q~~~Le~~F~~~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR~k~K 53 (53)
T d1le8a_ 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCHHHHHHHHHhhhhccC
Confidence 79999999999999999999999999999999999999999999999999865
No 23
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77 E-value=1.2e-19 Score=131.61 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=55.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHHh-hCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 59 RKKRSRAAFSHAQVYELEKRFN-AQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~-~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
..||+||.|+.+|+.+||++|. .++||+..++++||.+|||++++|++||||||+|.||
T Consensus 6 ~~~r~R~~~t~~Q~~~Le~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~k~kk 65 (71)
T d1wi3a_ 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHhhHhhhcc
Confidence 4567899999999999999997 4999999999999999999999999999999999886
No 24
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.72 E-value=8.6e-19 Score=118.58 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=49.0
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhh
Q psy526 63 SRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 63 ~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
+||.||.+|+.+||+.|..++||+..++++||.+|||++++|++||||||
T Consensus 1 PRt~ft~~Q~~~Le~~F~~n~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR 50 (50)
T d1s7ea1 1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50 (50)
T ss_dssp CCSCCCHHHHHHHHHHTTSSCSSTHHHHHHHHTTSCSSSHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhhcCCcCc
Confidence 58999999999999999999999999999999999999999999999998
No 25
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.72 E-value=2.3e-18 Score=126.29 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=52.4
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~~ 119 (274)
++.||.+|+.+||.+|..++||+..++++||..|||++++|++||+|||+|+|+..
T Consensus 7 ~~r~T~eQ~~~Le~~F~~n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k~k~~~ 62 (76)
T d2ecca1 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhch
Confidence 34579999999999999999999999999999999999999999999999999843
No 26
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.71 E-value=5.3e-18 Score=123.36 Aligned_cols=58 Identities=29% Similarity=0.508 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNA---QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
||+|+.|+.+|+.+||.+|.. ++||+..++++||.++||++.+|++||+|+|+|.|+.
T Consensus 2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~ 62 (73)
T d1pufb_ 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhccc
Confidence 567999999999999999974 8899999999999999999999999999999998874
No 27
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.70 E-value=2.3e-18 Score=126.27 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
+|.+|+.+||.+|..++||+..++++||..|||++++|+|||||||+|.|+.
T Consensus 11 ~T~~Q~~~Le~~F~~~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~r~k~~ 62 (76)
T d2ecba1 11 KTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 62 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHhHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999987764
No 28
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.65 E-value=1.5e-17 Score=113.23 Aligned_cols=50 Identities=26% Similarity=0.358 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 68 SHAQVYELEKRFNA-QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 68 t~~Ql~~Le~~F~~-~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
|.+|+.+||.+|.. ++||+..++++||.+|||++++|+|||||||+|+|+
T Consensus 1 T~~q~~iLE~~F~~~~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~k~k~ 51 (52)
T d1x2ma1 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51 (52)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccCc
Confidence 45799999999987 789999999999999999999999999999999875
No 29
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=99.64 E-value=1.6e-17 Score=122.21 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=52.3
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCcccchhhhhhhhhHHHHH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK---------------------LTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~---------------------L~~~~V~vWFqNrR~k~Kr~ 118 (274)
|+.|+.+|+.+||++|+.++||+..+|++||.+|| |++.+|++||+|||+|.|++
T Consensus 1 R~~~tp~Ql~~Le~~F~~n~yPs~~~Re~LA~~ln~~~~~~~~~~~~~~~~~~~~~vt~~~V~~WF~NRR~~~kr~ 76 (78)
T d1lfba_ 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 76 (78)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhchhhhccccccccccccccccCCCHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999995 89999999999999998874
No 30
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.64 E-value=1.1e-16 Score=111.97 Aligned_cols=51 Identities=33% Similarity=0.514 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHhhC---CCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 67 FSHAQVYELEKRFNAQ---KYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~---~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
|+.+|+.+|+.+|..+ +||+..++++||.++||++++|++||+|+|+|.|+
T Consensus 5 ft~~q~~~L~~~f~~~~~~pyPs~~e~~~La~~~gL~~~qV~~WF~N~R~r~K~ 58 (60)
T d1k61a_ 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHhHHhHhhcccccc
Confidence 9999999999999764 79999999999999999999999999999998875
No 31
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.62 E-value=3e-16 Score=110.53 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=51.8
Q ss_pred CCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 61 KRSRAAFSHAQVYELEKRFNA---QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
||+|+.|+.+++.+|+.+|.. +|||+..++.+||.++||+..||++||+|+|+|..
T Consensus 3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l 61 (62)
T d1x2na1 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61 (62)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence 456889999999999999985 89999999999999999999999999999998754
No 32
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.62 E-value=5.1e-17 Score=113.40 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=50.9
Q ss_pred CCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 62 RSRAAFSHAQVYELEKRFNA-QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~-~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
|.|+.++.++..+||.+|.. ++||+..++++||.+|||++++|++||||||+++|
T Consensus 3 k~~~~~k~~~~~iLE~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~k~r 58 (59)
T d2cqxa1 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58 (59)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCccccHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccC
Confidence 55778888999999999986 68999999999999999999999999999999975
No 33
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.27 E-value=6.2e-06 Score=58.15 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHhCCCCCcccccCcccCCCCcCCCC
Q psy526 12 KKINNNNITNNTMSYYGKKDIRDARDL 38 (274)
Q Consensus 12 ~~~~g~~~sqttis~fe~~~ls~~~~~ 38 (274)
-.+||++|||+||||||+++|+.+++.
T Consensus 35 ~~l~g~~~SQttIcRFE~l~LS~kn~~ 61 (75)
T d1e3oc2 35 GKLYGNDFSQTTISRFEALNLSFKNMS 61 (75)
T ss_dssp HHHHSCCCCHHHHHHHHHTCSCHHHHH
T ss_pred HHHcCcchhHHHHHHHHHhccCHHHHH
Confidence 468999999999999999999987653
No 34
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=97.25 E-value=6.9e-06 Score=57.39 Aligned_cols=27 Identities=4% Similarity=0.160 Sum_probs=24.0
Q ss_pred HHHhCCCCCcccccCcccCCCCcCCCC
Q psy526 12 KKINNNNITNNTMSYYGKKDIRDARDL 38 (274)
Q Consensus 12 ~~~~g~~~sqttis~fe~~~ls~~~~~ 38 (274)
-.+||++|||+||||||+++|+.++++
T Consensus 31 ~~l~g~~~SQttIcRFE~l~LS~kn~~ 57 (72)
T d1au7a2 31 AAVHGSEFSQTTICRFENLQLSFKNAC 57 (72)
T ss_dssp HHTTSSCCCHHHHHHHHTTCSBHHHHH
T ss_pred HHhcCcccchhHHHHHHhcccCHHHHH
Confidence 468999999999999999999987763
No 35
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.33 E-value=0.13 Score=34.74 Aligned_cols=46 Identities=11% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhh
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
|..+|-.+...+-..|+..+... ..+||..+|+.+..|..|.+|+.
T Consensus 5 Rk~LT~~eK~~ii~~~e~g~k~s---q~eIA~~fGv~~STvs~IlKnK~ 50 (66)
T d1hlva1 5 RRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKR 50 (66)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHH
T ss_pred cccCCHHHHHHHHHHHHcCCcch---HHHHHHHhCCChhHHHHHHHHHH
Confidence 44589988888888888887544 56799999999999999998843
No 36
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=79.25 E-value=1 Score=31.04 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=26.2
Q ss_pred CCCCCcCCHHHHHHHHHHH-hhCCCCCHHHHHH
Q psy526 61 KRSRAAFSHAQVYELEKRF-NAQKYLSGPERAD 92 (274)
Q Consensus 61 rR~RT~ft~~Ql~~Le~~F-~~~~~Ps~~~r~~ 92 (274)
+..|+.++..|..+|.+++ ..+++|+-.+..+
T Consensus 6 ~~~R~aIs~~qK~ALR~~~~~~~~~~sqk~l~~ 38 (78)
T d1iufa1 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIE 38 (78)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 4568999999999999995 7888888775544
No 37
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=75.71 E-value=2.1 Score=27.74 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
.++..|..++..+|-.. -...+||..+|++...|+.....-|.+.|+.
T Consensus 21 ~L~~~~r~v~~l~~~~~-----~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~ 68 (71)
T d1rp3a2 21 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 68 (71)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhHh-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 36777888887777433 3577899999999999998887777666653
No 38
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=75.56 E-value=2.3 Score=27.62 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHHH
Q psy526 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr~ 118 (274)
+...+..++.-.|-... ...+||..+|++...|+++.+.-|.+.|+.
T Consensus 19 Lp~~~r~v~~l~~~~~~-----s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~ 65 (68)
T d1or7a1 19 LPEDLRMAITLRELDGL-----SYEEIAAIMDCPVGTVRSRIFRAREAIDNK 65 (68)
T ss_dssp SCHHHHHHHHHHHTTCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 45667777776654332 367899999999999999998887776654
No 39
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=74.70 E-value=2.4 Score=26.16 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=33.4
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhh
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFq 109 (274)
..+|.+|++.+.+.+... . .+.+||..+|++...|--||-
T Consensus 4 ~~lt~~q~~~a~~l~~~G-~----s~~~iA~~~gVSr~TiYry~p 43 (47)
T d1ijwc_ 4 RAINKHEQEQISRLLEKG-H----PRQQLAIIFGIGVSTLYRYFP 43 (47)
T ss_dssp CSSCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHhhCC
Confidence 358999999999999743 3 377899999999999998883
No 40
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=55.48 E-value=4.3 Score=27.07 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=35.8
Q ss_pred CCCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Ccccchhhh
Q psy526 62 RSRAAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKL--TETQVKIWF 108 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L--~~~~V~vWF 108 (274)
..|..+|.+|+..|...|.. +.+.+..+...+...+|. ++..|+-+|
T Consensus 3 ~a~~~Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~e~~~~~ 56 (81)
T d1avsa_ 3 EARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAII 56 (81)
T ss_dssp SHHHHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHHHcCCCCCHHHHHHHH
Confidence 34677999999999999863 568999999998888875 444555554
No 41
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=55.00 E-value=4.7 Score=26.20 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--Ccccchhhhh
Q psy526 67 FSHAQVYELEKRFN-----AQKYLSGPERADVAKSLKL--TETQVKIWFQ 109 (274)
Q Consensus 67 ft~~Ql~~Le~~F~-----~~~~Ps~~~r~~LA~~l~L--~~~~V~vWFq 109 (274)
+|.+|+..|...|. .+.+.+..+...+...+|. ++..|+-||+
T Consensus 2 Ls~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~~~~~~~~ 51 (73)
T d2pq3a1 2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 51 (73)
T ss_dssp CCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 68999999999996 3668999999999888875 5666777764
No 42
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=52.38 E-value=6.3 Score=25.36 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchh
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~v 106 (274)
.++..+..+|..+|..+.. ......+||..+|++..+|+-
T Consensus 8 ~L~~rer~Ii~~ryGl~~~-~~~tl~eIa~~lgiS~erVrq 47 (61)
T d1ku3a_ 8 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQ 47 (61)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCC-CCCCHHHHHHHHCCCHHHHHH
Confidence 4788999999999976543 225577899999999987754
No 43
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=51.77 E-value=6.8 Score=25.50 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=34.9
Q ss_pred CcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Ccccchhhhh
Q psy526 65 AAFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKL--TETQVKIWFQ 109 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L--~~~~V~vWFq 109 (274)
+.||.+|+..|...|.. +.+.+..+...+...+|+ +...|+-||+
T Consensus 2 ~~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~t~~e~~~~~~ 53 (77)
T d1f54a_ 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMN 53 (77)
T ss_dssp CCCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45899999999999964 557889998888888875 4556666663
No 44
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=50.01 E-value=12 Score=23.92 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=33.2
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
|..+|..|.++|.-.- .. ..-.+||..+|++.+.|+.-.++=+.|
T Consensus 2 ~p~LT~rE~~vl~l~~--~G----~s~~eIA~~L~is~~TV~~~~~~i~~K 46 (67)
T d1fsea_ 2 KPLLTKREREVFELLV--QD----KTTKEIASELFISEKTVRNHISNAMQK 46 (67)
T ss_dssp CCCCCHHHHHHHHHHT--TT----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cc----CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3468999999996542 22 235679999999999998887665554
No 45
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=48.26 E-value=6.9 Score=26.62 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=29.3
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhh
Q psy526 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 64 RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFq 109 (274)
|..|+.+.....=+.+.... ..-..+||..+|++..+|..|.+
T Consensus 3 rk~Ys~EfK~~aV~l~~~~~---g~s~~~vA~~lGIs~~tl~~W~k 45 (89)
T d2jn6a1 3 TKTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWII 45 (89)
T ss_dssp CCCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CCcHHHHHHHHCCCHHHHHHHHH
Confidence 34588887666544443221 12356799999999999999964
No 46
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=41.91 E-value=3.5 Score=25.33 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=25.3
Q ss_pred HhhCCCCCHHHHHHHHHHhCCCcccchhhhhh
Q psy526 79 FNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110 (274)
Q Consensus 79 F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqN 110 (274)
|-...|-..-..++||+.+||+++.+..+|+.
T Consensus 11 yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~ 42 (54)
T d1bl0a1 11 WIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 42 (54)
T ss_dssp HHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHhccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455556677889999999999999999964
No 47
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=40.13 E-value=19 Score=22.70 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
.+|..|+++|.-.-. ...-.+||..++++.+.|+.-.++=+.|.
T Consensus 4 ~Lt~rE~~vl~l~~~------G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl 47 (65)
T d1l3la1 4 WLDPKEATYLRWIAV------GKTMEEIADVEGVKYNSVRVKLREAMKRF 47 (65)
T ss_dssp CCCHHHHHHHHHHTT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHh------cCCHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 578888888865532 23356799999999999998877655553
No 48
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.00 E-value=12 Score=25.44 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccchhhhh
Q psy526 66 AFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLTETQVKIWFQ 109 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~~~~V~vWFq 109 (274)
.++.+++..++..|.. +.+.+..+...+..+.+|+...++.+|.
T Consensus 3 ~lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~~~l~~~~l~~i~~ 51 (95)
T d1c07a_ 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4678888999999964 4578899999999999999888877664
No 49
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=37.99 E-value=37 Score=22.60 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=35.7
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
..+|..|.++|.-...--. ..+||..++++.+.|+.-.++-+.|.
T Consensus 21 ~~LT~rE~~vl~ll~~G~s------~~eIA~~l~iS~~TV~~~~~~i~~Kl 65 (87)
T d1p4wa_ 21 KRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKL 65 (87)
T ss_dssp SSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCC------HHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 3589999999987765333 67899999999999998877766664
No 50
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=37.71 E-value=23 Score=23.27 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHh------hCCCCCHHHHHHHHHHhCCC--cccchhhhh
Q psy526 66 AFSHAQVYELEKRFN------AQKYLSGPERADVAKSLKLT--ETQVKIWFQ 109 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~------~~~~Ps~~~r~~LA~~l~L~--~~~V~vWFq 109 (274)
.++.+|+..++..|. ++.+.+..+...+...+|+. +..|+-+|.
T Consensus 8 ~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~~lg~~~t~~el~~~i~ 59 (82)
T d1wrka1 8 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 59 (82)
T ss_dssp HCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 378999999999984 23589999999999998864 455555553
No 51
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=37.69 E-value=9.1 Score=25.09 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 68 SHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 68 t~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
+.+++..|.+... -...+||+.||++.+.|.-|=+++|.
T Consensus 2 s~e~~k~~R~~~g-------ltQ~elA~~LGvs~~ti~~yE~G~r~ 40 (67)
T d2auwa1 2 SHEMFGDWMHRNN-------LSLTTAAEALGISRRMVSYYRTAHKI 40 (67)
T ss_dssp CHHHHHHHHHHTT-------CCHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcC-------CCHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 4455555544422 23568999999999999999888764
No 52
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=35.78 E-value=30 Score=21.82 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=32.8
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 65 AAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 65 T~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
..+|+.|+++|.-.-. . ..-.+||.+++++++.|+.-..+-..|
T Consensus 5 ~~LT~rE~~vl~ll~~--G----~s~~eIA~~l~iS~~TV~~~~~~i~~K 48 (67)
T d1a04a1 5 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKK 48 (67)
T ss_dssp GGSCHHHHHHHHHHHT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHh--C----CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4589999999976543 2 234679999999999998877665544
No 53
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=35.06 E-value=10 Score=24.47 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 72 l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
+..-...|.+..| . ....+||...|+++..|--+|.|+-.
T Consensus 7 l~aA~~l~~~~G~-~-~t~~~Ia~~agvs~~~~Y~~F~~K~~ 46 (70)
T d2hkua1 7 FTAATELFLEHGE-G-VPITQICAAAGAHPNQVTYYYGSKER 46 (70)
T ss_dssp HHHHHHHHHHHCT-T-SCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhccc-C-chHHHHHHHHCCChhhHHhcCCCHHH
Confidence 4455566877776 5 46889999999999999999999744
No 54
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=33.92 E-value=19 Score=23.39 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHhCCCcccchhhhhhhh
Q psy526 82 QKYLSGPERADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 82 ~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
.+.|+. ++||..|||+...|+-|....+
T Consensus 24 GR~Pt~---~EiA~~lg~s~~e~~~~l~~~~ 51 (77)
T d1rp3a1 24 GREPTD---EEVAKELGISTEELFKTLDKIN 51 (77)
T ss_dssp SSCCCH---HHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcCCCH---HHHHHHHCcCHHHHHHHHHHHh
Confidence 445554 5789999999999999976533
No 55
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=33.65 E-value=15 Score=23.92 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchh
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~v 106 (274)
.++..+..+|...|..+... ....++||..+|++..+|+-
T Consensus 5 ~L~~rE~~Ii~~rfGl~~~~-~~tl~eI~~~lgiSrerVrq 44 (68)
T d2p7vb1 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQ 44 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCC-cCCHHHHHHHHCCCHHHHHH
Confidence 36788999999999765533 24677899999999887653
No 56
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=33.22 E-value=14 Score=25.36 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchh
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKI 106 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~v 106 (274)
.++..+..+|...|...... .....+||..+|++..+|+-
T Consensus 18 ~L~~rE~~Ii~~rfGl~~~~-~~tl~eI~~~lgiSrERVRQ 57 (87)
T d1ttya_ 18 TLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQ 57 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSS-CCCHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCC-cCCHHHHHHHhCCCHHHHHH
Confidence 47888999999999765443 34678899999999987653
No 57
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.13 E-value=26 Score=24.63 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=26.3
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcc
Q psy526 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTET 102 (274)
Q Consensus 62 R~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~ 102 (274)
|....++..|+.+|+..+ ..|+++|.+.++...
T Consensus 15 k~~~~l~~~qlavl~~L~--------~wRe~~Ar~~d~p~~ 47 (113)
T d2cpra1 15 KQKKHLNTQQLTAFQLLF--------AWRDKTARREDESYG 47 (113)
T ss_dssp SSSSCCCHHHHHHHHHHH--------HHHHHHHHHTTCCHH
T ss_pred hcccCCCHHHHHHHHHHH--------HHHHHHHHHhCCCcc
Confidence 344568999999999987 678888888887764
No 58
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.61 E-value=46 Score=20.47 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=29.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Q psy526 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK 98 (274)
Q Consensus 59 k~rR~RT~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~ 98 (274)
+.+..+..+|.++...|...+...+.-+...=..||..++
T Consensus 7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~ 46 (60)
T d2cqra1 7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP 46 (60)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS
T ss_pred cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC
Confidence 3455567899999999999998766544455567888774
No 59
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.27 E-value=54 Score=20.92 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=36.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCC--CCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 60 KKRSRAAFSHAQVYELEKRFNAQK--YLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 60 ~rR~RT~ft~~Ql~~Le~~F~~~~--~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
.||+|-.+|.+.-.........-. .-.+..+.++-..-+|+..+|+.=.|--|.+.+|
T Consensus 3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k 62 (64)
T d1irza_ 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 356677889876555544443322 2344444454445578888999888887777665
No 60
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.10 E-value=21 Score=23.86 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccchhhh
Q psy526 66 AFSHAQVYELEKRFNA-----QKYLSGPERADVAKSLKLTETQVKIWF 108 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~l~L~~~~V~vWF 108 (274)
.++.+++..+++.|.. +.+.+..+...+..+.+|+..+++..+
T Consensus 2 ~ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~~l~~~~l~~i~ 49 (92)
T d1fi6a_ 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 4789999999999975 336788888888889999988776554
No 61
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=29.69 E-value=34 Score=21.82 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhH
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
.+|+.++++|.-.-. .+ ...+||..+|++++.|+.-..+-+.|
T Consensus 12 ~LT~rE~~vl~~l~~--G~----s~~eIA~~l~iS~~TV~~~~~~i~~K 54 (70)
T d1yioa1 12 SLTGREQQVLQLTIR--GL----MNKQIAGELGIAEVTVKVHRHNIMQK 54 (70)
T ss_dssp TSCHHHHHHHHHHTT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 377888888765532 22 34579999999999998877665444
No 62
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=27.99 E-value=42 Score=23.48 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHHH
Q psy526 67 FSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117 (274)
Q Consensus 67 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~Kr 117 (274)
++..|..++.-+|-..- ...+||..+|++...|+.=+..-|.+.++
T Consensus 17 Lp~~qR~v~~L~y~~~l-----s~~EIA~~lgiS~~aV~~~l~RA~~~L~~ 62 (106)
T d1s7oa_ 17 LTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 62 (106)
T ss_dssp SCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67888899988775443 35789999999999999988877777665
No 63
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=27.84 E-value=14 Score=23.55 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHHH
Q psy526 72 VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116 (274)
Q Consensus 72 l~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~K 116 (274)
+......|.+..| ..-....||+.+|+++..|...|.|+-.=..
T Consensus 10 l~aa~~l~~~~g~-~~~si~~ia~~~gvs~~~~y~hF~~K~~L~~ 53 (68)
T d2g7la1 10 VDTAVALMRAEGL-EKVTMRRLAQELDTGPASLYVYVANTAELHA 53 (68)
T ss_dssp HHHHHHHHHHHCS-SSCCHHHHHHHTTSCHHHHTTTCCSHHHHHH
T ss_pred HHHHHHHHHHhCc-ccCCHHHHHHHHCcCHhHhhHHCcCHHHHHH
Confidence 3444555666664 4445677999999999999999999755433
No 64
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=27.30 E-value=18 Score=23.04 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
.-+..+...|.+..|-. -...+||...|++...+-.+|.|+-
T Consensus 10 ~I~~aa~~l~~~~G~~~-~sv~~Ia~~agvs~~t~Y~~F~~k~ 51 (71)
T d2iu5a1 10 IIAKAFKDLMQSNAYHQ-ISVSDIMQTAKIRRQTFYNYFQNQE 51 (71)
T ss_dssp HHHHHHHHHHHHSCGGG-CCHHHHHHHHTSCGGGGGGTCSSHH
T ss_pred HHHHHHHHHHHHcCccc-CCHHHHHHHhCccccHHHHHcCCHH
Confidence 34566777788877544 4466789999999999999999864
No 65
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=26.60 E-value=11 Score=24.63 Aligned_cols=24 Identities=4% Similarity=-0.081 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
.++||..+|++...|.-|..+++.
T Consensus 24 q~~lA~~~gis~~~i~~~E~g~~~ 47 (79)
T d1y9qa1 24 LDATAQLTGVSKAMLGQIERGESS 47 (79)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTCSC
T ss_pred HHHHHHHHCcchhHHHHHHcCCCC
Confidence 678999999999999999988754
No 66
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=26.06 E-value=11 Score=23.64 Aligned_cols=25 Identities=4% Similarity=0.149 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCcccchhhhhhhhhH
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRYK 114 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~k 114 (274)
..+||+.+|++...|..|-.+++..
T Consensus 19 q~~lA~~~gvs~~ti~~~E~g~~~~ 43 (65)
T d2croa_ 19 QTELATKAGVKQQSIQLIEAGVTKR 43 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCSS
T ss_pred HHHHHHHHCcCHhHHHHHHCCCCCC
Confidence 5679999999999999998766543
No 67
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=25.61 E-value=13 Score=24.49 Aligned_cols=19 Identities=11% Similarity=0.314 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCcccchhhh
Q psy526 90 RADVAKSLKLTETQVKIWF 108 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWF 108 (274)
|.+||..+|++++.|.-|-
T Consensus 5 k~~lA~iFGVS~~TI~~W~ 23 (68)
T d1j9ia_ 5 KKQLADIFGASIRTIQNWQ 23 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 6789999999999999993
No 68
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.08 E-value=60 Score=20.33 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccch
Q psy526 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105 (274)
Q Consensus 66 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~ 105 (274)
-+|.++...|++.-.+-+--+...-+.||..+|-+..+|.
T Consensus 3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vgkt~~ev~ 42 (59)
T d2cqqa1 3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVT 42 (59)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHCCCHHHHH
Confidence 4789999999999887776555556678999985554443
No 69
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=24.76 E-value=18 Score=23.04 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhhHH
Q psy526 71 QVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115 (274)
Q Consensus 71 Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~k~ 115 (274)
-+....+.|....|- .-...+||.+.|+++..|..+|.|+-.=.
T Consensus 9 Il~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~~~y~~F~~k~~L~ 52 (69)
T d2fq4a1 9 ILSASYELLLESGFK-AVTVDKIAERAKVSKATIYKWWPNKAAVV 52 (69)
T ss_dssp HHHHHHHHHHHHCTT-TCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHhCcc-cCCHHHHHHHHCcCHHHHHHHCCCHHHHH
Confidence 345555667777754 34467789999999999999999976543
No 70
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=24.18 E-value=13 Score=23.05 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCcccchhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRR 112 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR 112 (274)
..+||..+|++...|.-|..+++
T Consensus 17 q~elA~~~gvs~~~is~~E~g~~ 39 (63)
T d1r69a_ 17 QAELAQKVGTTQQSIEQLENGKT 39 (63)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45799999999999999987654
No 71
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=23.75 E-value=14 Score=23.50 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCCcccchhhhhhhhh
Q psy526 89 ERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 89 ~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..++||..+|++...|.-|-.+++.
T Consensus 24 tq~~lA~~~gis~~~i~~~E~g~~~ 48 (69)
T d1y7ya1 24 SQETLAFLSGLDRSYVGGVERGQRN 48 (69)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHhHhCCCHHHHHHHHCCCCC
Confidence 3557899999999999999887753
No 72
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=23.24 E-value=14 Score=23.28 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|-.+++.
T Consensus 17 q~elA~~~gis~~~is~~e~g~~~ 40 (66)
T d1utxa_ 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHhcccCHHHHHHHHcCCCC
Confidence 567899999999999999887654
No 73
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.08 E-value=14 Score=23.30 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||+.+|++...|.-|-.++|.
T Consensus 17 q~~la~~~gis~~~i~~~E~g~~~ 40 (68)
T d1b0na2 17 LSELAEKAGVAKSYLSSIERNLQT 40 (68)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCCS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567899999999999999987653
No 74
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.73 E-value=15 Score=24.29 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhh
Q psy526 74 ELEKRFNAQKYLSGPERADVAKSLKLTETQVKIW 107 (274)
Q Consensus 74 ~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vW 107 (274)
+|...|.-.+ | -=|..||+.++|++++|+.=
T Consensus 7 vl~~l~ll~q-P--iGRr~La~~L~l~Er~vRte 37 (69)
T d2p8ta1 7 VLAVIFLLKE-P--LGRKQISERLELGEGSVRTL 37 (69)
T ss_dssp HHHHHHHTTS-C--BCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcC-C--ccHHHHHHHcCCcHHHHHHH
Confidence 4555554322 2 44778999999999988754
No 75
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=22.20 E-value=16 Score=22.93 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCcccchhhhhhhhh
Q psy526 90 RADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 90 r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
..+||..+|++...|.-|-.+++.
T Consensus 19 q~~lA~~~gvs~~~i~~~e~g~~~ 42 (66)
T d2r1jl1 19 QAALGKMVGVSNVAISQWERSETE 42 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 76
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.24 E-value=40 Score=21.35 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccchhhhhhhhh
Q psy526 70 AQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113 (274)
Q Consensus 70 ~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l~L~~~~V~vWFqNrR~ 113 (274)
.-++.....|....|- .-...+||+..|++...|-.+|.|+..
T Consensus 11 ~Il~aa~~l~~~~G~~-~~si~~Ia~~agvs~~t~Y~~F~~Ke~ 53 (76)
T d2fd5a1 11 RILGAATQALLERGAV-EPSVGEVMGAAGLTVGGFYAHFQSKDA 53 (76)
T ss_dssp HHHHHHHHHHHHHTTT-SCCHHHHHHHTTCCGGGGGGTCSCHHH
T ss_pred HHHHHHHHHHHHhCcc-cccHHHHHHHhCCCccchhhcCCCHHH
Confidence 4455556667777754 344677899999999999999999754
Done!