RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy526
(274 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 95.6 bits (239), Expect = 1e-25
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
+R R F+ Q+ ELEK F +Y S ER ++AK L LTE QVK+WFQNRR K KR
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in
the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 87.3 bits (217), Expect = 2e-22
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+R R F+ Q+ ELEK F Y S ER ++AK L LTE QVKIWFQNRR K KR +
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 86.2 bits (214), Expect = 5e-22
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
K+R R +F+ Q+ ELEK F Y S ER ++AK L L+E QVK+WFQNRR K K
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 51.7 bits (124), Expect = 3e-08
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 43 ALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTET 102
A + L + Q + K R + Q+ LE+ F Y S R ++ L +
Sbjct: 34 AADSEMKLERKQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPK 93
Query: 103 QVKIWFQNRRYKTKRKQ 119
V+IWFQN+R K K+K+
Sbjct: 94 SVQIWFQNKRAKEKKKR 110
>gnl|CDD|131525 TIGR02472, sucr_P_syn_N, sucrose-phosphate synthase, putative,
glycosyltransferase domain. This family consists of the
N-terminal regions, or in some cases the entirety, of
bacterial proteins closely related to plant
sucrose-phosphate synthases (SPS). The C-terminal domain
(TIGR02471), found with most members of this family,
resembles both bona fide plant sucrose-phosphate
phosphatases (SPP) and the SPP-like domain of plant SPS.
At least two members of this family lack the SPP-like
domain, which may have binding or regulatory rather than
enzymatic activity by analogy to plant SPS. This enzyme
produces sucrose 6-phosphate and UDP from UDP-glucose
and D-fructose 6-phosphate, and may be encoded near the
gene for fructokinase.
Length = 439
Score = 28.9 bits (65), Expect = 2.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
GR+KR R + + ++EK++N + + E SL +T T +I Q Y
Sbjct: 148 GREKRRRLLAAGLKPQQIEKQYNISRRIEAEEETLAHASLVITSTHQEIEEQYALYD 204
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 27.8 bits (62), Expect = 5.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 13 KINNNNITNN-TMSYYGKKDIRDARDLPKPAALS 45
N +I NN MS + D+ DA L PA LS
Sbjct: 164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197
>gnl|CDD|216379 pfam01234, NNMT_PNMT_TEMT, NNMT/PNMT/TEMT family.
Length = 255
Score = 27.7 bits (62), Expect = 5.8
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 1 MDSMK--DSEEYYKKINNNNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTG 58
MD EEY KK N N YY DA L LP L Q+ P G
Sbjct: 1 MDGEGFLAGEEYKKKFNPRAYLNT---YYKFAS-GDA--AEMQIVLFFLPNLLQTFGPGG 54
Query: 59 RKKRS 63
K +
Sbjct: 55 VKGDT 59
>gnl|CDD|133133 cd06602, GH31_MGAM_SI_GAA, This family includes the following three
closely related glycosyl hydrolase family 31 (GH31)
enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase
(SI), and lysosomal acid alpha-glucosidase (GAA), also
known as acid-maltase. MGAM is one of the two enzymes
responsible for catalyzing the last glucose-releasing
step in starch digestion. SI is implicated in the
digestion of dietary starch and major disaccharides such
as sucrose and isomaltose, while GAA degrades glycogen
in the lysosome, cleaving both alpha-1,4 and alpha-1,6
glucosidic linkages. MGAM and SI are anchored to
small-intestinal brush-border epithelial cells. The
absence of SI from the brush border membrane or its
malfunction is associated with malabsorption disorders
such as congenital sucrase-isomaltase deficiency (CSID).
The domain architectures of MGAM and SI include two
tandem GH31 catalytic domains, an N-terminal domain
found near the membrane-bound end, and a C-terminal
luminal domain. Both of the tandem GH31 domains of MGAM
and SI are included in this family. The domain
architecture of GAA includes an N-terminal TFF (trefoil
factor family) domain in addition to the GH31 catalytic
domain. Deficient GAA expression causes pompe disease,
an autosomal recessive genetic disorder also known as
glycogen storage disease type II (GSDII).
Length = 339
Score = 27.9 bits (63), Expect = 6.1
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 179 FYNMHSLYGTQ 189
FY++H+LYG
Sbjct: 169 FYDVHNLYGLS 179
>gnl|CDD|153344 cd07660, BAR_Arfaptin, The Bin/Amphiphysin/Rvs (BAR) domain of
Arfaptin. The BAR domain of Arfaptin-like proteins,
also called the Arfaptin domain, is a dimerization and
lipid binding module that can detect and drive membrane
curvature. Arfaptins are ubiquitously expressed proteins
implicated in mediating cross-talk between Rac, a member
of the Rho family GTPases, and Arf (ADP-ribosylation
factor) small GTPases. Arfaptins bind to GTP-bound Arf1,
Arf5, and Arf6, with strongest binding to GTP-Arf1.
Arfaptins also bind to Rac-GTP and Rac-GDP with similar
affinities. The Arfs are thought to bind to the same
surface as Rac, and their binding is mutually exclusive.
Mammals contain at least two isoforms of Arfaptin.
Arfaptin 1 has been shown to inhibit the activation of
Arf-dependent phospholipase D (PLD) and the secretion of
matrix metalloproteinase-9 (MMP-9), an enzyme implicated
in cancer invasiveness and metastasis. Arfaptin 2
regulates the aggregation of the protein huntingtin,
which is implicated in Huntington disease. Arfaptins are
single-domain proteins with a BAR-like structure. BAR
domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 201
Score = 27.3 bits (61), Expect = 8.4
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLL 123
R A + A++ E ++RF A K R DV+ LK E +N+ K KQL L
Sbjct: 128 RDAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLE-------ENK-VKVMHKQLLLF 179
Query: 124 EGSLNTPSAGNGK 136
+++ +GN K
Sbjct: 180 HNAISAYFSGNQK 192
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 27.7 bits (61), Expect = 9.2
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 198 SMANSLYYYPLFYNMHSNYGAQLTSPVLTTVTSTTYNEDDGESSGSGEGEEGDGGEIVDV 257
S +SL + M +N G SP L S + + G GSG G E D+
Sbjct: 3777 SNLDSLSKISTLFFMVANNG--FCSPDLPQEKSNSGELESGTGLGSGVGAE-------DI 3827
Query: 258 CNDVEEDD 265
N + EDD
Sbjct: 3828 TNTLNEDD 3835
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type
peptidylprolyl cis- trans isomerase domain occuring with
a C-terminal RNA recognition motif domain (RRM). This
subfamily of the cyclophilin domain family contains a
number of eukaryotic cyclophilins having the RRM domain
including the nuclear proteins: human hCyP-57,
Arabidopsis thaliana AtCYP59, Caenorhabditis elegans
CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241
protein has been shown to have a role in cell
morphogenesis.
Length = 166
Score = 26.9 bits (60), Expect = 9.5
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 204 YYYPLFYNMHSNYGAQLTSPVLTTVTSTTYNEDDGESSGSGEG 246
Y + LFYN+ ++ AQ P T GES S
Sbjct: 34 YNFCLFYNVQKDFIAQTGDP--------TGTGAGGESIYSQLY 68
>gnl|CDD|235927 PRK07078, PRK07078, hypothetical protein; Validated.
Length = 759
Score = 27.4 bits (61), Expect = 9.7
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 28 GKKDIR--DARDL----PKPAALSNLPGLAQS 53
+K+ R DA+ P+P L N PGL +
Sbjct: 159 RRKEFRPWDAKRRKMAPPEPRPLYNQPGLLSA 190
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.129 0.367
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,706,513
Number of extensions: 1261270
Number of successful extensions: 893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 893
Number of HSP's successfully gapped: 19
Length of query: 274
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 179
Effective length of database: 6,723,972
Effective search space: 1203590988
Effective search space used: 1203590988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.1 bits)