RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy526
(274 letters)
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 129 bits (327), Expect = 6e-39
Identities = 44/64 (68%), Positives = 50/64 (78%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G + SH QV ELE++F+ QKYLS PERA +AK+LKLTETQVKIWFQNRRYKTKR
Sbjct: 2 GHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61
Query: 118 KQLQ 121
KQL
Sbjct: 62 KQLS 65
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 128 bits (323), Expect = 2e-38
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G K++ R FS AQ+ L+ RF QKYLS + +++ L L+ QVK WFQN+R K KR
Sbjct: 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60
Query: 118 KQ 119
Q
Sbjct: 61 WQ 62
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 125 bits (315), Expect = 4e-37
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 120 LQ 121
Sbjct: 62 KD 63
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 124 bits (314), Expect = 7e-37
Identities = 40/78 (51%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S +K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN R
Sbjct: 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 61
Query: 113 YKTKRKQLQLLEGSLNTP 130
YKTKR Q + +G P
Sbjct: 62 YKTKRAQNE--KGYEGHP 77
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 122 bits (308), Expect = 3e-36
Identities = 38/57 (66%), Positives = 45/57 (78%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+++ R FS AQVYELE+RF Q+YLS PER +A LKLT TQVKIWFQNRRYK+K
Sbjct: 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 120 bits (303), Expect = 4e-35
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G ++K+ R +F+ QV ELEKRF+ QKYL+ ERA +A+ LK+T+ QVK WF
Sbjct: 6 GHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWF 65
Query: 109 QNRRYKTKRKQLQLLEGSLNTPS 131
QNRR K +R+ + E +
Sbjct: 66 QNRRTKWRRQTAEEREAERQAAN 88
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 119 bits (301), Expect = 4e-35
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++ R F+ AQ+ LE++F ++YLS ERA+ + SL LTETQVKIWFQNRR K KR
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 119 bits (300), Expect = 8e-35
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 39 PKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLK 98
+P + N + + P +K+++R FS Q+ L RF QKYLS + +++ L
Sbjct: 2 KQPTSAENSVAKKEDKVP-VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILN 60
Query: 99 LTETQVKIWFQNRRYKTKRKQ 119
L+ QVK WFQN+R K+KR Q
Sbjct: 61 LSYKQVKTWFQNQRMKSKRWQ 81
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 116 bits (293), Expect = 8e-34
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
++ R +S Q+ L++RF +YL+ PERA++A SL LT+TQVKIWFQN+R K
Sbjct: 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKI 62
Query: 116 KRKQ 119
K+
Sbjct: 63 KKSG 66
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 115 bits (291), Expect = 9e-34
Identities = 31/53 (58%), Positives = 42/53 (79%)
Query: 66 AFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+FS +QV ELE+RF QKYL+ ERA +AK+L++T+ QVK WFQNRR K +R+
Sbjct: 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 112 bits (281), Expect = 4e-32
Identities = 33/65 (50%), Positives = 40/65 (61%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
K + FS+ Q ELEK+F QKYLS PER +AK L+L+E QVK WFQNRR K
Sbjct: 2 SSGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61
Query: 115 TKRKQ 119
+R
Sbjct: 62 WRRSG 66
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 108 bits (272), Expect = 1e-30
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQV 104
S+ + + +RSR F+ Q+ LEKRF QKYLS P+R D+A+SL L++ QV
Sbjct: 2 SSGSSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 61
Query: 105 KIWFQNRRYKTKRKQ 119
K W+QNRR K K+
Sbjct: 62 KTWYQNRRMKWKKSG 76
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 104 bits (261), Expect = 4e-29
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
+R+R F+ +Q+ ELE+ F +YL+ P AD++ L L QVKIWF+NRR + K +
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62
Query: 121 QLLEGS 126
Q + S
Sbjct: 63 QHKDQS 68
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 96.5 bits (241), Expect = 4e-26
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+ + +++ S LE+ F ++ L+ E+ +VAK +T QV++WF N+R ++K
Sbjct: 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 93.2 bits (232), Expect = 7e-25
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+R R AF+ Q+ LEK F + Y+S P R ++A L L E+ +K+WFQNRR K KR++
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR 60
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 90.5 bits (225), Expect = 7e-24
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
+KR R AFS Q+ L++ FN +YL+ R ++ L L E Q+KIWF+N+R K K+
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 91.5 bits (227), Expect = 7e-24
Identities = 33/68 (48%), Positives = 44/68 (64%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
S+P G R F+ Q+ ELEK F+ KYLS R ++A +L+L ETQVKIWFQNR
Sbjct: 26 VSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNR 85
Query: 112 RYKTKRKQ 119
R K K+++
Sbjct: 86 RMKQKKRE 93
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 90.1 bits (224), Expect = 1e-23
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G KR+R A++ AQ+ ELEK F KY+S P R ++A L LTE +KIWFQNRR K K+
Sbjct: 1 GSNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60
Query: 118 KQ 119
++
Sbjct: 61 EE 62
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 86.0 bits (213), Expect = 6e-22
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
G ++R R ++ Q ELEK F+ YL+ R ++A +L LTE Q+KIWFQNR
Sbjct: 12 AIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNR 71
Query: 112 RYKTKRKQ 119
R K K++
Sbjct: 72 RMKLKKEI 79
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 85.5 bits (212), Expect = 6e-22
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+KR R ++ Q ELEK F+ +YL+ R ++A +L LTE Q+KIWFQNRR K K++
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 85.3 bits (211), Expect = 2e-21
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
+ G KR R +++ Q ELEK F+ +YL+ R ++A +L LTE Q+KIWFQN
Sbjct: 19 TSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 78
Query: 111 RRYKTKRKQ 119
RR K K++
Sbjct: 79 RRMKWKKEH 87
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 81.4 bits (201), Expect = 3e-20
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
++ R +S Q+ ELE+ + A K+++ +R ++ + L+E Q+ IWFQNRR K
Sbjct: 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61
Query: 115 TKRKQ 119
K+
Sbjct: 62 EKKSG 66
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 83.1 bits (205), Expect = 7e-20
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 30 KDIRDARDLPKPAALSNLPGL--AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSG 87
K + DA + + P + R+++ R + LEK F + +
Sbjct: 69 KWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTS 128
Query: 88 PERADVAKSLKLTETQVKIWFQNRRYKTKR 117
+ +A+ L + + +++WF NRR K KR
Sbjct: 129 EDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 79.5 bits (196), Expect = 1e-19
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++ R ++ Q+ ELE+ + K+++ +R ++ + L+E QV IWFQNRR K K+
Sbjct: 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 64
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 78.7 bits (194), Expect = 3e-19
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
++ R ++ Q ELEK F YL+ R +VA+ L LTE QVKIWFQNRR K
Sbjct: 8 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 67
Query: 115 TKRKQ 119
K+
Sbjct: 68 MKKIN 72
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 81.2 bits (200), Expect = 3e-19
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
GRK++ R + LE F S E +A SL+L + V++WF NR
Sbjct: 91 DKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNR 150
Query: 112 RYKTKR 117
R K KR
Sbjct: 151 RQKEKR 156
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 79.6 bits (196), Expect = 9e-19
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 52 QSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNR 111
+ RK++ R S A LE+ F S E +A+ L L + V++WF NR
Sbjct: 79 EKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNR 138
Query: 112 RYKTKRKQ 119
R + KR +
Sbjct: 139 RQREKRVK 146
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 75.1 bits (185), Expect = 7e-18
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G + S + K + SH Q+ L+ F ++ E + K L+ +V+ WF
Sbjct: 1 GSSGSSGASIYKNK----KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWF 56
Query: 109 QNRRYKTKRKQLQLLEGSLNTPSAG 133
+RRY + L+GS + PS+G
Sbjct: 57 SDRRYHCRN-----LKGSRSGPSSG 76
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 73.9 bits (182), Expect = 2e-17
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+ SR F+ Q+ L+ F+A Y E ++ L L + +WFQN R K ++
Sbjct: 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65
Query: 119 Q 119
Sbjct: 66 G 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 71.7 bits (176), Expect = 1e-16
Identities = 11/65 (16%), Positives = 26/65 (40%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
+ Q+ L+ F ++ E + + L +++K WF + RY+ +R
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61
Query: 118 KQLQL 122
+ +
Sbjct: 62 GIVHI 66
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 70.5 bits (173), Expect = 4e-16
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+R R F+ AQ+ LE F +Y R +VA + L E++V++WF+NRR K +++
Sbjct: 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65
Query: 119 QLQLLEGSLNTPSAG 133
Q Q G + PS+G
Sbjct: 66 QQQQQNGGQSGPSSG 80
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 70.6 bits (173), Expect = 4e-16
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
KR R +F H Q+ ++ F + +A+ LT+ +++WFQN R K +R
Sbjct: 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65
Query: 119 QLQLLEGSLNTPSAG 133
L+ G ++ PS+G
Sbjct: 66 LLRQENGGVSGPSSG 80
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 71.6 bits (175), Expect = 9e-16
Identities = 19/103 (18%), Positives = 35/103 (33%)
Query: 15 NNNNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYE 74
+IT + + + + +K++ R +F+ +
Sbjct: 48 EKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEA 107
Query: 75 LEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
L F +G E ++AK L V++WF NRR K
Sbjct: 108 LNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 68.6 bits (168), Expect = 2e-15
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPE---RADVAKSLKLTETQVKIWFQNR 111
+R+R +F+ Q+ LEK F Y P+ R +A + L E ++++WF NR
Sbjct: 2 SSGSSGQRNRTSFTQEQIEALEKEFERTHY---PDVFARERLAAKIDLPEARIQVWFSNR 58
Query: 112 RYKTKRKQLQLLEGSLNTPSAG 133
R K +R++ + + PS+G
Sbjct: 59 RAKWRREEKLRNQRRQSGPSSG 80
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 70.5 bits (172), Expect = 3e-15
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 46 NLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVK 105
NL +++S+ +KR R + + + LE F S + +A L L + V+
Sbjct: 82 NLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141
Query: 106 IWFQNRRYKTKRK 118
+WF NRR K KR
Sbjct: 142 VWFSNRRQKGKRS 154
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 68.3 bits (167), Expect = 3e-15
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 42 AALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTE 101
+ + G +P R KR R + Q+ L +++ + +A + L +
Sbjct: 1 GSSGSSGGTGGEEPQ--RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKK 58
Query: 102 TQVKIWFQNRRYKTKRKQLQ 121
V++WFQN R + ++
Sbjct: 59 RVVQVWFQNTRARERKSGPS 78
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 67.0 bits (164), Expect = 7e-15
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
KR R + Q+ L + F+ S + ++A L + +K WF+N +K ++
Sbjct: 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQ 64
Query: 118 KQ 119
Sbjct: 65 SG 66
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 65.9 bits (161), Expect = 2e-14
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 61 KRSRAAFSHAQVYELEKRFN-AQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
++ + + QV LE FN K+ +A LTE Q + WF+ R + +R +
Sbjct: 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 65.8 bits (161), Expect = 2e-14
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPE---RADVAKSLKLTETQVKIWFQNRRYK 114
G ++R R F+ Q+ +LE F +Y P+ R ++A LTE +V++WF+NRR K
Sbjct: 1 GSQRRQRTHFTSQQLQQLEATFQRNRY---PDMSTREEIAVWTNLTEARVRVWFKNRRAK 57
Query: 115 TKRKQLQLL 123
++++ ++
Sbjct: 58 WRKREEFIV 66
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 66.6 bits (162), Expect = 2e-14
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL---------------KLT 100
+ SR + + +E FN +Y +R ++A + ++T
Sbjct: 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVT 62
Query: 101 ETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAG 133
+V WF NRR + KR+ + PS+G
Sbjct: 63 SLKVYNWFANRRKEIKRRANIAAILESSGPSSG 95
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 64.7 bits (158), Expect = 4e-14
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+ R R + Q++ L + A + + + L+ +++WFQN+R K K++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 119 QLQL 122
+ +
Sbjct: 62 SIMM 65
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 63.9 bits (156), Expect = 8e-14
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPE---RADVAKSLKLTETQVKIWFQNRRYK 114
GR R R AF+ Q+ LE F Y P D+A+ L L +++IWFQNRR K
Sbjct: 1 GR--RPRTAFTQNQIEVLENVFRVNCY---PGIDILEDLAQKLNLELDRIQIWFQNRRAK 55
Query: 115 TKRKQ 119
KR
Sbjct: 56 LKRSH 60
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 65.7 bits (159), Expect = 2e-13
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 2 DSMKDSEEYYKKINNNNITNNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKK 61
+K E ++++ ++ R A + K
Sbjct: 50 SKLKSGRETFRRMWKW-----------LQEPEFQRMSALRLAACKRKEQEHGKDRGNTPK 98
Query: 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQ 121
+ R F+ Q L F K S + +++ L L + V +F N R ++ K L+
Sbjct: 99 KPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 62.9 bits (153), Expect = 2e-13
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 58 GRKKRSRAAFSHAQVYELEKRF-NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
RSR S + L+ + Y ++ L L + + +FQN+RY K
Sbjct: 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
Query: 117 R 117
Sbjct: 65 H 65
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 62.8 bits (153), Expect = 3e-13
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 9/74 (12%)
Query: 52 QSQPPTGRKK---RSRAAFSHAQVYELEKRFNAQKYLSGPE---RADVAKSLKLTETQVK 105
+S+P K+ RSR FS +Q+ ELE+ F +Y P+ R ++A+ LTE +++
Sbjct: 7 ESEPGIALKRKQRRSRTTFSASQLDELERAFERTQY---PDIYTREELAQRTNLTEARIQ 63
Query: 106 IWFQNRRYKTKRKQ 119
+WFQNRR + +++
Sbjct: 64 VWFQNRRARLRKQH 77
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 62.4 bits (152), Expect = 4e-13
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPE---RADVAKSLKLTETQVKIWFQNRRYKT 115
+R R F+ Q+ LE F KY P+ R +A+ + L E +V++WF+NRR K
Sbjct: 6 SGRRHRTIFTDEQLEALENLFQETKY---PDVGTREQLARKVHLREEKVEVWFKNRRAKW 62
Query: 116 KRKQ 119
+R
Sbjct: 63 RRSG 66
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 60.3 bits (146), Expect = 2e-12
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G + S PT K+R+ Q+ LE F E + K+T ++ WF
Sbjct: 1 GSSGSSGPTKYKERAPE-----QLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWF 55
Query: 109 QNRRYKTKRKQ 119
RR K ++
Sbjct: 56 SERRKKVNAEE 66
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 59.2 bits (144), Expect = 3e-12
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 63 SRAAFSHAQVYELEKRFNAQKYLSGPE---RADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
S F+ Q+ ELEK F+ Y P+ R ++A + LTE ++++WFQNRR K ++++
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHY---PDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 59.2 bits (143), Expect = 7e-12
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
P K++++ QV LE F + + E + KL+ ++ WF RR
Sbjct: 14 PQKFKEKTQG-----QVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLR 68
Query: 116 KRKQLQLLEGSLNTPSA 132
+ +L+ + S
Sbjct: 69 DSMEQAVLDSMGSGKSG 85
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 56.2 bits (136), Expect = 6e-11
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 62 RSRAAFSHAQVYELEKRFN-AQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
A + QV LE FN K+ +A LTE Q + WF+ R + +R +
Sbjct: 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 58.3 bits (140), Expect = 1e-10
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 21/119 (17%)
Query: 21 NNTMSYYGKKDIRDARDLPKPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFN 80
++Y +K A+ + + PT + +R+R + A L + +
Sbjct: 76 AALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYE 135
Query: 81 AQKYLSGPERADVAK---------------------SLKLTETQVKIWFQNRRYKTKRK 118
QK S ER + + S +TE +V WF NRR + +
Sbjct: 136 RQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 194
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 55.8 bits (134), Expect = 1e-10
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P K+++ Q+ L+ F L+ E + KLT ++ WF ++
Sbjct: 11 TPQKFKEKTAE-----QLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 65
Query: 115 TKRKQLQLLEGSLNTPSAGN 134
K+ ++ N S+
Sbjct: 66 KALKEEKMEIDESNAGSSSG 85
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 52.5 bits (125), Expect = 3e-09
Identities = 20/80 (25%), Positives = 30/80 (37%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQV 104
S L L Q P + Q++ L+ F ++ S E +AK L T +
Sbjct: 10 SGLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDI 69
Query: 105 KIWFQNRRYKTKRKQLQLLE 124
WF + RY K L+
Sbjct: 70 VSWFGDTRYAWKNGNLKWYY 89
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 50.8 bits (121), Expect = 6e-09
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G S + Q+ L+ F ++ + + + L ++ WF + RY K
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
Query: 118 KQLQLLEGSLNTPSAG 133
QL+ + + PS+G
Sbjct: 61 GQLKWFRDNASGPSSG 76
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 49.4 bits (118), Expect = 2e-08
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQ-KYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
++ LEK F + KY ++K L + +++ WF++RR + K
Sbjct: 11 DSPVNKVE----PNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 50.8 bits (120), Expect = 7e-08
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 21/87 (24%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK----------------- 95
S+P + +R+R + A L + ++ QK S ER + +
Sbjct: 135 SEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKA 194
Query: 96 ----SLKLTETQVKIWFQNRRYKTKRK 118
S +TE +V WF NRR + +
Sbjct: 195 HGLGSNLVTEVRVYNWFANRRKEEAFR 221
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 48.3 bits (114), Expect = 1e-07
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 21/85 (24%)
Query: 56 PTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK-------------------- 95
PT + +R+R + A L + + QK S ER + +
Sbjct: 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL 64
Query: 96 -SLKLTETQVKIWFQNRRYKTKRKQ 119
S +TE +V WF NRR + +
Sbjct: 65 GSNLVTEVRVYNWFANRRKEEAFRH 89
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 42.5 bits (100), Expect = 5e-06
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQ-KYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
G S A LEK F A K+ ++K L ++ WF+ RR + K
Sbjct: 1 GSSGSSGTA---QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 42.6 bits (99), Expect = 7e-06
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 58 GRKKRSRAAFSHAQVYELEKRF----NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+ R FS + L+K + + + + VA L + V+ W NRR
Sbjct: 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRR 65
Query: 114 KTKRKQLQ 121
K + ++
Sbjct: 66 KYRLMGIE 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 9e-05
Identities = 43/277 (15%), Positives = 73/277 (26%), Gaps = 66/277 (23%)
Query: 23 TMSYYGKKDIRD--ARDLPKPAALSNLPGLAQSQPPT-------------GRKKRSRAAF 67
T S++ +++ + LP+P G A PT
Sbjct: 24 TASFFIASQLQEQFNKILPEPTE-----GFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 68 SHAQVYELEKRFNA--QKYLSGPERADVAKSL----KLTETQVKIWFQN--------RRY 113
QV L YL G + +A L T + K +N +R
Sbjct: 79 QFDQV--LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 114 KTKRKQLQLLEGSLNTPSAGNGKKVAV--------------KILVRESHPYGSDYLYGTQ 159
K+ L GN + VA+ + L + H D + +
Sbjct: 137 FDKKSNSALFRAV----GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 160 GKLLPPAPSMANSLYYYPLFYNMHS-LYGTQGKLLPPAPSMANSLYYYPLFYNMHSNYGA 218
L + ++ + N+ L P + + PL
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNT--PDKDYLLSIPISCPLI--------- 241
Query: 219 QLTSPVLTTVTSTTYNEDDGESSGSGEGEEGDGGEIV 255
+ VT+ GE +G G +V
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Score = 33.5 bits (76), Expect = 0.075
Identities = 41/235 (17%), Positives = 68/235 (28%), Gaps = 75/235 (31%)
Query: 68 SHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR--------KQ 119
+ QV + + N+ P V SL N + +
Sbjct: 345 TQEQVQDYVNKTNS----HLPAGKQVEISLV-----------N----GAKNLVVSGPPQS 385
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRE------------SHPYGSDYLYGTQGKLLPPAP 167
L L +L A +G + +I E + P+ S L P +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNRFLPVASPFHSHLLV-------PASD 437
Query: 168 SMANSLYYYPLFYNMHSL----YGTQ-GK-LLPPAPSMANSLYYYPLFYNMHSNYGAQLT 221
+ L + +N + Y T G L + S++ + +
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD------------CIIR 485
Query: 222 SPV---LTTVTSTTYNEDDGESSGSGEGE------EGDGGEIVDVCN-DVEEDDQ 266
PV TT T+ D G SG G +G G ++ D+ DD
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 30.4 bits (68), Expect = 0.72
Identities = 43/251 (17%), Positives = 78/251 (31%), Gaps = 76/251 (30%)
Query: 68 SHAQ--VYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKT------KRKQ 119
S Q +L K A + + RAD + + I N T K K+
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVW--NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 120 LQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYLY-GTQGKLLP-----PA---PSMA 170
++ ++ + +GK KI +E + + + Y + +G L PA A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 171 NSLYYYPLFYNM--------------HSL--YG-------------------TQGKLLPP 195
F ++ HSL Y +G +
Sbjct: 1743 -------AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 196 APSMANSLYYYPLFYNMHSNYGAQLTSPVLTTVTSTTYNEDDGESSGSGEGEEGDGGEIV 255
A P SNYG +P + +++++ + G+ G +V
Sbjct: 1796 AV---------PRDELGRSNYGMIAINP---GRVAASFSQEALQYVVERVGKRT--GWLV 1841
Query: 256 DVCNDVEEDDQ 266
++ N E+ Q
Sbjct: 1842 EIVNYNVENQQ 1852
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 37.1 bits (86), Expect = 6e-04
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 40 KPAALSNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQK---YLSGPERADVAKS 96
K A + Q K F+ V LE F YL ++ K+
Sbjct: 7 KSADGLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKN 66
Query: 97 LKLTETQVKIWFQN--RRYKT 115
L+ Q+K W N R+ KT
Sbjct: 67 TSLSRIQIKNWVSNRRRKEKT 87
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 35.6 bits (81), Expect = 0.003
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 21/100 (21%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK--------------------- 95
+G R+R + A L + ++ QK S ER + +
Sbjct: 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLG 62
Query: 96 SLKLTETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAGNG 135
S +TE +V WF NRR + +Q ++ + +G
Sbjct: 63 SNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSSNSGPSSG 102
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 32.7 bits (74), Expect = 0.008
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 103 QVKIWFQNRRYKTKRK 118
Q+KIWFQNRR K K++
Sbjct: 2 QIKIWFQNRRMKWKKR 17
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 33.6 bits (77), Expect = 0.009
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQK---YLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
K F+ V LE F YL ++ K+ L+ Q+K W RR K K
Sbjct: 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEK 61
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 32.3 bits (74), Expect = 0.016
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQK---YLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
R R F+ V LE F YL ++ K+ L+ Q+K W NRR K
Sbjct: 1 RGHR----FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 56
Query: 116 K 116
K
Sbjct: 57 K 57
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 70
Score = 31.7 bits (71), Expect = 0.041
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 68 SHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+ LE+ + A + L + ++++ +L+ QV WF +R +
Sbjct: 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQPAEVS 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 31.5 bits (71), Expect = 0.041
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 71 QVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+ L+ + S E + +A S+ L VK WF+ + Q
Sbjct: 14 LLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 29.6 bits (66), Expect = 0.25
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKY-LSGPERADVAK---SLKLT 100
S+ + G KR R F+ Q ++ + + + V + +
Sbjct: 2 SSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVR 61
Query: 101 ETQVKIWFQNRRYKTKR 117
+KIW N +
Sbjct: 62 RQVLKIWMHNNKNSGPS 78
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 29.3 bits (66), Expect = 0.30
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 49 GLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWF 108
G + S + + + + + RF A Y S E+ +++ L+ Q+ WF
Sbjct: 1 GSSGSSGKKRKGNLPAESVKILRDWMYKHRFKA--YPSEEEKQMLSEKTNLSLLQISNWF 58
Query: 109 QNRRYKTKRKQLQLLEGSLNTPSAG 133
N R + LQ + PS+G
Sbjct: 59 INARRRILPDMLQQRRNDPSGPSSG 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.33
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 116 KRKQLQLLEGSLNTPSAGNGKKVAVK 141
+++ L+ L+ SL + + +A+K
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus
musculus} SCOP: a.4.1.1
Length = 64
Score = 28.4 bits (64), Expect = 0.39
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQK---YLSGPERADVAKSLKLTETQVKIWFQN--RRY 113
+ L + F + Y S + ++AK +T +QV WF N RY
Sbjct: 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 61
Query: 114 K 114
K
Sbjct: 62 K 62
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 30.9 bits (70), Expect = 0.41
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+ + AA S LE+ F ++ L+ E+ +VAK +T QV++WF N+R ++K
Sbjct: 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 28.6 bits (64), Expect = 0.58
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 84 YLSGPERADVAKSLKLTETQVKIWFQN--RRYKTKRKQLQLLEGSLNTPSAGNGK 136
Y S E+A +++ L+ QV WF N RR + + + T S K
Sbjct: 32 YPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAK 86
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 27.1 bits (60), Expect = 2.0
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 84 YLSGPERADVAKSLKLTETQVKIWFQN--RRYKTKRKQLQLLEGSLNTPSAGNGKKVA 139
Y S + ++AK +T +QV WF N RYK + Q +A V+
Sbjct: 28 YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTATNVS 85
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger
homeobox family protein, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: a.4.1.1
Length = 80
Score = 26.9 bits (59), Expect = 2.1
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 45 SNLPGLAQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKY---LSGPERADVAK---SLK 98
S+ + ++ G +KR R F+ Q + A++ + + + +
Sbjct: 2 SSGSSGSSAEAGGGIRKRHRTKFTAEQKERMLA-L-AERIGWRIQRQDDEVIQRFCQETG 59
Query: 99 LTETQVKIWFQNRRYKTKR 117
+ +K+W N ++
Sbjct: 60 VPRQVLKVWLHNNKHSGPS 78
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 26.5 bits (59), Expect = 2.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 84 YLSGPERADVAKSLKLTETQVKIWFQNRR 112
Y S ++ +A+ LT QV WF N R
Sbjct: 25 YPSEEQKKQLAQDTGLTILQVNNWFINAR 53
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 73
Score = 26.2 bits (58), Expect = 2.8
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYEL-----EKRFNAQKYLSGPERADVAKSLKLTETQVKIW 107
S +G+ KR + + + Y + E+ +A LT QV W
Sbjct: 2 SSGSSGKNKRGV--LPKHATNVMRSWLFQHIGHP--YPTEDEKKQIAAQTNLTLLQVNNW 57
Query: 108 FQNRR 112
F N R
Sbjct: 58 FINAR 62
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 26.2 bits (58), Expect = 3.0
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQK---YLSGPERADVAKSLKLTETQVKIWFQN--RR 112
R+KR F+ L + F + Y S + ++AK +T +QV WF N R
Sbjct: 1 ARRKRRN--FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
Query: 113 YKTKRKQLQ 121
YK + Q
Sbjct: 59 YKKNIGKFQ 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 3.3
Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 29/164 (17%)
Query: 2 DSMKDSEEYYKKINNNNITNNTMSYYGKKDIRDARDLPKPAALSNL-PGLAQSQPPT--- 57
+ Y ++ + N + K ++ + L L + +P
Sbjct: 104 QPSMMTRMYIEQRDR---LYNDNQVFAK------YNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 58 -----GRKKRSRAAFSHAQVYELEKRFNAQKY-LSGPERADVAKSLKLTETQVKIWFQNR 111
G K A Y+++ + + + + L+ K+ ET +++ Q
Sbjct: 155 IDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLN-------LKNCNSPETVLEM-LQKL 205
Query: 112 RYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGSDYL 155
Y+ + S N + + ++ L++ PY + L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLL 248
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs,
transferase; 2.40A {Infectious bursal disease virus}
PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Length = 852
Score = 26.9 bits (58), Expect = 8.2
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 152 SDYLYGTQGKLLPPAPSM-ANSLYYYPLFYNMHSLYGTQGKLLPPAPSMANSLYYYPLFY 210
++ +G +L P S+ Y+P +Y H + PP ++ + Y L
Sbjct: 89 LAWMRQIEGAVLKPTLSLPIGDQEYFPKYYPTHRPSKEKPNAYPPDIALLKQMIYLFLQV 148
Query: 211 NMHSNYGAQLTSPVLTTVTSTTY 233
+ + + + Y
Sbjct: 149 PEANEGLKDEVTLLTQNIRDKAY 171
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 26.1 bits (57), Expect = 8.5
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 111 RRYKTKRKQLQLLEGSLNTPSAGNGKKVAVKILVRESHPYGS--DYLYGTQGKLLPPAPS 168
Y T ++L L G++ P GN + + + + +++PY ++ T +
Sbjct: 44 DSYGTGSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKH 103
Query: 169 -MANSLYYYPLFYN 181
AN Y P +
Sbjct: 104 VDANGKIYLPYLHE 117
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 24.8 bits (53), Expect = 9.4
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 89 ERADVAKSLKLTETQVKIWFQNRRYKTKRKQLQLLEGSLNTPSAG 133
E ++ ++ L + VK WF+ R+ S + PS+G
Sbjct: 34 ELLKISIAVGLPQEFVKEWFEQRKVYQ-------YSNSRSGPSSG 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.129 0.367
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,059,575
Number of extensions: 228649
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 90
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (25.3 bits)