RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy526
(274 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 90.6 bits (225), Expect = 3e-24
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+R+R +F+ Q+ LEK F Y R +A + L E ++++WF NRR K +R++
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 60
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 89.5 bits (222), Expect = 6e-24
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+ R R + Q++ L + A + + + L+ +++WFQN+R K K++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 119 QLQL 122
+ +
Sbjct: 62 SIMM 65
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 89.5 bits (222), Expect = 8e-24
Identities = 29/69 (42%), Positives = 38/69 (55%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQN 110
A + ++ R ++ Q ELEK F YL+ R +VA+ L LTE QVKIWFQN
Sbjct: 4 AANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 63
Query: 111 RRYKTKRKQ 119
RR K K+
Sbjct: 64 RRMKMKKIN 72
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 88.0 bits (218), Expect = 2e-23
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
K + FS+ Q ELEK+F QKYLS PER +AK L+L+E QVK WFQNRR K +R
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 86.1 bits (213), Expect = 2e-22
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+++RSR FS +Q+ ELE+ F +Y R ++A+ LTE ++++WFQNRR + +++
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
Query: 119 Q 119
Sbjct: 61 H 61
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 86.2 bits (213), Expect = 3e-22
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S+P G R F+ Q+ ELEK F+ KYLS R ++A +L+L ETQVKIWFQNRR
Sbjct: 20 SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRR 79
Query: 113 YKTKRKQLQ 121
K K+++ +
Sbjct: 80 MKQKKRERE 88
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 84.4 bits (209), Expect = 4e-22
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R ++ Q ELEK F+ +YL+ R ++A +L LTE Q+KIWFQNRR K K++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 84.5 bits (209), Expect = 5e-22
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++ R +S Q+ ELE+ + A K+++ +R ++ + L+E Q+ IWFQNRR K K+
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 83.8 bits (207), Expect = 1e-21
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 60 KKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+++ R FS AQVYELE+RF QKYLS PER +A + LT TQVKIWFQN RYK KR+
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 120 LQ 121
Sbjct: 62 KD 63
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 80.7 bits (199), Expect = 1e-20
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
R R AFS Q+ L++ FN +YL+ R ++ L L E Q+KIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 80.4 bits (198), Expect = 2e-20
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+R R F+ Q+ +LE F +Y R ++A LTE +V++WF+NRR K ++++
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 79.9 bits (197), Expect = 3e-20
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
R R AF+ Q+ LEK F + Y+S P R ++A L L E+ +K+WFQNRR K KR+
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 79.6 bits (196), Expect = 3e-20
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
++ R F+ AQ+ LE++F ++YLS ERA+ + SL LTETQVKIWFQNRR K KR
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 79.6 bits (196), Expect = 4e-20
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
+ R S A LE+ F S E +A+ L L + V++WF NRR + KR +
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 79.6 bits (196), Expect = 5e-20
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 61 KRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQL 120
+R+R F+ +Q+ ELE+ F +YL+ P AD++ L L QVKIWF+NRR + K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 121 QLLEGS 126
Q + S
Sbjct: 62 QHKDQS 67
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 76.6 bits (188), Expect = 8e-19
Identities = 38/69 (55%), Positives = 48/69 (69%)
Query: 53 SQPPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
S +K++ R F+ AQ YELE+RF Q+YLS PER +A ++LT TQVKIWFQN R
Sbjct: 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 61
Query: 113 YKTKRKQLQ 121
YKTKR Q +
Sbjct: 62 YKTKRAQNE 70
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 74.3 bits (182), Expect = 7e-18
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 62 RSRAAFSHAQVYELEKRFNAQKYLSGPERADVAK---------------SLKLTETQVKI 106
SR + + +E FN +Y +R ++A ++T +V
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 107 WFQNRRYKTKRKQ 119
WF NRR + KR+
Sbjct: 62 WFANRRKEIKRRA 74
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 73.0 bits (179), Expect = 7e-18
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRR 112
R F+ Q L F K S + +++ L L + V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 73.5 bits (180), Expect = 9e-18
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRK 118
+KR R + + + LE F S + +A L L + V++WF NRR K KR
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 72.6 bits (178), Expect = 1e-17
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+++ S LE+ F ++ L+ E+ +VAK +T QV++WF N+R ++K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 71.7 bits (176), Expect = 3e-17
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 59 RKKRSRAAFSHAQVYELEKRFNAQK---YLSGPERADVAKSLKLTETQVKIWFQNRRYKT 115
R R F+ V LE F YL ++ K+ L+ Q+K W NRR K
Sbjct: 1 RGHR----FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 56
Query: 116 KR 117
K
Sbjct: 57 KT 58
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 69.4 bits (170), Expect = 3e-16
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 57 TGRKKRSRAAFSHAQVYELEKRFNAQK---YLSGPERADVAKSLKLTETQVKIWFQNRRY 113
+G+ KR + Y + E+ +A LT QV WF N R
Sbjct: 1 SGKNKRGV--LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINAR- 57
Query: 114 KTKRKQLQ 121
R+ LQ
Sbjct: 58 ---RRILQ 62
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 69.6 bits (170), Expect = 3e-16
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 61 KRSRAAFSHAQVYELEKRFNA-QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKRKQ 119
A + QV LE FN K+ +A LTE Q + WF+ R + +R +
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 69.0 bits (168), Expect = 6e-16
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 55 PPTGRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYK 114
P +K + Q+ L+ F L+ E + KLT ++ WF ++
Sbjct: 1 PDFTPQKFKE--KTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 58
Query: 115 TKRKQLQLLEGSLNTPSA 132
K+ ++ N S+
Sbjct: 59 KALKEEKMEIDESNAGSS 76
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 68.5 bits (167), Expect = 6e-16
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 61 KRSRAAFSHAQVYELEKRFNA---QKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
+R R F+ L + F + Y S + ++AK +T +QV WF N+R + K+
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 118 KQLQ 121
+
Sbjct: 62 NIGK 65
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 67.8 bits (165), Expect = 1e-15
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 58 GRKKRSRAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
G S + Q+ L+ F ++ + + + L ++ WF + RY K
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
Query: 118 KQLQLLEGSLNTPSAG 133
QL+ + + PS+G
Sbjct: 61 GQLKWFRDNASGPSSG 76
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 66.9 bits (163), Expect = 2e-15
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
R + LEK F + + + +A+ L + + +++WF NRR K KR
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 67.1 bits (163), Expect = 3e-15
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 21/77 (27%)
Query: 64 RAAFSHAQVYELEKRFNAQKYLSGPERADVAKSL---------------------KLTET 102
R + A L + + QK S ER + + +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 103 QVKIWFQNRRYKTKRKQ 119
+V WF NRR + +
Sbjct: 61 RVYNWFANRRKEEAFRH 77
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 66.3 bits (161), Expect = 4e-15
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 58 GRKKRSRAAFSHAQVYELEKRF-NAQKYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
RSR S + L+ + Y ++ L L + + +FQN+RY K
Sbjct: 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
Query: 117 R 117
Sbjct: 65 H 65
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 64.4 bits (157), Expect = 1e-14
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 71 QVYELEKRFNAQ-KYLSGPERADVAKSLKLTETQVKIWFQNRRYKTKR 117
LEK F A K+ ++K L ++ WF+ RR + K
Sbjct: 4 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 63.2 bits (154), Expect = 5e-14
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 62 RSRAAFSHAQVYELEKRFNAQ-KYLSGPERADVAKSLKLTETQVKIWFQNRRYKTK 116
+ LEK F + KY ++K L + +++ WF++RR + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 58.9 bits (142), Expect = 3e-12
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 4/71 (5%)
Query: 51 AQSQPPTGRKKRSRAAFSHAQVYELE----KRFNAQKYLSGPERADVAKSLKLTETQVKI 106
+ G KR R F+ Q ++ + + + +KI
Sbjct: 8 SNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKI 67
Query: 107 WFQNRRYKTKR 117
W N +
Sbjct: 68 WMHNNKNSGPS 78
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 28.5 bits (63), Expect = 0.19
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 238 GESSGSGEGEEGDGGEIVDVCNDVEEDDQ 266
G S SGE E D + +C +
Sbjct: 1 GSSGSSGECEVYDPNALYCICRQPHNNRF 29
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 26.7 bits (59), Expect = 2.3
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 210 YNMHSNYGAQLTSPVL---TTVTSTTYNEDDGESSGSGEGEEGDGGEIVDVCNDV 261
YN +G + + N+D G + S E +G G ++ V + V
Sbjct: 18 YNQEDPFGIADFREIAFEVKSNKRIKGNDDYGIADNSEEAVDGMGADVEQVIDIV 72
>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 432
Score = 25.9 bits (55), Expect = 6.0
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 144 VRESHPYGSDYLYGTQGKLLPPAPSMANSLYYYPLFYNMHSLYGT 188
+ + Y L L P + N Y + + +G
Sbjct: 71 IDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVDPAFGD 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.129 0.367
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 988,297
Number of extensions: 43886
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 37
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.0 bits)