BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5260
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8WXM1|OXDD1_CAEBR D-aspartate oxidase 1 OS=Caenorhabditis briggsae GN=CBG04460 PE=3
SV=1
Length = 331
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 3 CLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
C + L+V APW HF Y D+ + IP N +V +G + + + +I+ D IL
Sbjct: 195 CYPIRGVILEVDAPWHKHFNYRDFTTFTIPKEN-SVVIGSTKQDNRWDLEITDEDRNDIL 253
Query: 63 ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLK------VIHNYGHGGYGVTT 116
R L P + E +L EW LRP R VR+E +Q + V+H+YGHG G T
Sbjct: 254 SRYIELHPGMREPKILKEWSALRPGRKHVRIESQQRKTTETGKEYTVVHHYGHGSNGFTL 313
Query: 117 APGTSRYAVQLVKQAL 132
GT+ A +LVK+AL
Sbjct: 314 GWGTAIEATKLVKKAL 329
>sp|O45307|OXDD2_CAEEL D-aspartate oxidase 2 OS=Caenorhabditis elegans GN=C47A10.5 PE=1
SV=2
Length = 334
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
L V A W HF Y D+ + IP N +V +G + + + +I+ D ILER +L P
Sbjct: 203 LDVEAHWHKHFNYKDFITFTIPKEN-SVVIGSVKQENRWDLEITDVDRKDILERYVALHP 261
Query: 71 RLEEAPVLYEWCGLRPHRSLVRVE------IEQIGRLKVIHNYGHGGYGVTTAPGTSRYA 124
+ E +L EW GLRP R +R+E + + V+H+YGHGG G T GT+ A
Sbjct: 262 AMREPKILGEWSGLRPARKTIRIEKVEKKSEKSGKKYTVVHHYGHGGNGFTLGWGTAVEA 321
Query: 125 VQLVKQALDPTS 136
+LVK AL+ +
Sbjct: 322 TKLVKSALNSSK 333
>sp|Q19564|OXDD1_CAEEL D-aspartate oxidase 1 OS=Caenorhabditis elegans GN=F18E3.7 PE=1
SV=1
Length = 334
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Query: 2 VCLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASI 61
C + L+V APW HF Y D+ + IP + +V +G + + + +I+ D I
Sbjct: 197 TCYPIRGVILEVDAPWHKHFNYRDFTTFTIPKEH-SVVVGSTKQDNRWDLEITDEDRNDI 255
Query: 62 LERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQ---IGRLK---VIHNYGHGGYGVT 115
L+R +L P + E ++ EW LRP R VR+E ++ +G K V+H+YGHG G T
Sbjct: 256 LKRYIALHPGMREPKIIKEWSALRPGRKHVRIEAQKRTSVGNSKDYMVVHHYGHGSNGFT 315
Query: 116 TAPGTSRYAVQLVKQAL 132
GT+ A +LVK AL
Sbjct: 316 LGWGTAIEATKLVKTAL 332
>sp|P22942|OXDA_RABIT D-amino-acid oxidase OS=Oryctolagus cuniculus GN=DAO PE=2 SV=1
Length = 347
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 14/139 (10%)
Query: 11 LQVWAPWLSHFYYLDYDV--------YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
++V APW+ HF + +D YIIP + AVTLGG ++S S D +I
Sbjct: 203 IKVDAPWVKHFI-ITHDPESGIYKSPYIIPGVH-AVTLGGIFQMGNWSEGNSTDDHNTIW 260
Query: 63 ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAP 118
+ C SL P L++A ++ EW G RP R +R+ EQ+ + +VIHNYGHGGYG+T
Sbjct: 261 KGCCSLEPTLKDARIVGEWTGFRPVRPQIRLGREQLSAGPSKTEVIHNYGHGGYGLTIHW 320
Query: 119 GTSRYAVQLVKQALDPTSS 137
G + A +L + L+ S
Sbjct: 321 GCALEAAKLFGKILEEKKS 339
>sp|O35078|OXDA_RAT D-amino-acid oxidase OS=Rattus norvegicus GN=Dao PE=2 SV=1
Length = 346
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 11 LQVWAPWLSHFYYLDYDV--------YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
+QV APW+ HF L +D YIIP S VTLGG ++S S HD +I
Sbjct: 202 IQVEAPWIKHFI-LTHDPSLGIYNSPYIIPGSK-TVTLGGVFQLGNWSELNSVHDHNTIW 259
Query: 63 ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAP 118
+ C L P L+ A ++ E G RP R VR+E E++ +VIHNYGHGGYG+T
Sbjct: 260 KSCCQLEPTLKNARIMGELTGFRPVRPQVRLERERLRFGSSSAEVIHNYGHGGYGLTIHW 319
Query: 119 GTSRYAVQLVKQALD 133
G + A L + L+
Sbjct: 320 GCAMEAANLFGKILE 334
>sp|Q9Z302|OXDA_CRIGR D-amino-acid oxidase OS=Cricetulus griseus GN=DAO PE=2 SV=1
Length = 346
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 14/135 (10%)
Query: 11 LQVWAPWLSHFYYLDYDV--------YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
+QV APW+ HF L +D YIIP S VTLGG +++ S HD +I
Sbjct: 202 IQVEAPWMKHFI-LTHDPRLGIYNSPYIIPGSK-TVTLGGVFQLGNWNELNSVHDHNTIW 259
Query: 63 ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAP 118
+ C L P L+ A ++ E G RP R VR++ +Q+ ++VIHNYGHGGYG+T
Sbjct: 260 KSCCKLEPTLKNAKIVGELTGFRPVRHQVRLKKKQLHFGSSSVEVIHNYGHGGYGLTIHW 319
Query: 119 GTSRYAVQLVKQALD 133
G + A L + L+
Sbjct: 320 GCAMEAANLFGKILE 334
>sp|A3KCL7|OXDD_PIG D-aspartate oxidase OS=Sus scrofa GN=DDO PE=2 SV=1
Length = 341
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
L+V APW+ HF + I VTLGG R ++ + + IL RC +L P
Sbjct: 204 LKVQAPWVKHFIRDGSGLTYIYPGLANVTLGGTRQKGDWNLSPNAEISKQILSRCCALEP 263
Query: 71 RLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAPGTSRYAVQ 126
L A + E GLRP R VR+E E + RL V+HNYGHG G+ GT+ A +
Sbjct: 264 SLRGACDIREKVGLRPSRPGVRLEKELLVQGSQRLPVVHNYGHGSGGIAMHWGTALEAAR 323
Query: 127 LVKQALDP--TSSLKSKL 142
LV + + T + KSKL
Sbjct: 324 LVSECVQALRTPAPKSKL 341
>sp|P00371|OXDA_PIG D-amino-acid oxidase OS=Sus scrofa GN=DAO PE=1 SV=2
Length = 347
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Query: 11 LQVWAPWLSHFYYLDYDV--------YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
++V APWL +F + +D+ YIIP AVTLGG +++ + D +I
Sbjct: 203 IKVDAPWLKNFI-ITHDLERGIYNSPYIIPGLQ-AVTLGGTFQVGNWNEINNIQDHNTIW 260
Query: 63 ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAP 118
E C L P L++A ++ E+ G RP R VR+E EQ+ +VIHNYGHGGYG+T
Sbjct: 261 EGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHW 320
Query: 119 GTSRYAVQLVKQALDPTSSL 138
G + +L + L+ + L
Sbjct: 321 GCALEVAKLFGKVLEERNLL 340
>sp|P14920|OXDA_HUMAN D-amino-acid oxidase OS=Homo sapiens GN=DAO PE=1 SV=3
Length = 347
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 11 LQVWAPWLSHFYYLDYDV--------YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
++V APW+ HF L +D YIIP + VTLGG ++S + D +I
Sbjct: 203 MKVDAPWMKHFI-LTHDPERGIYNSPYIIPGTQ-TVTLGGIFQLGNWSELNNIQDHNTIW 260
Query: 63 ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAP 118
E C L P L+ A ++ E G RP R +R+E EQ+ +VIHNYGHGGYG+T
Sbjct: 261 EGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHW 320
Query: 119 GTSRYAVQLVKQALD 133
G + A +L + L+
Sbjct: 321 GCALEAAKLFGRILE 335
>sp|Q9Z1M5|OXDA_CAVPO D-amino-acid oxidase OS=Cavia porcellus GN=DAO PE=2 SV=1
Length = 347
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 11 LQVWAPWLSHFYYLDYDV--------YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
++V APW+ HF L +D YIIP VTLGG +++ S D +I
Sbjct: 203 IKVNAPWIKHFI-LTHDPERGIYKSPYIIPGIQ-EVTLGGIFQLGNWNEINSTQDHNTIW 260
Query: 63 ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAP 118
+ C SL P L A ++ E+ G RP R +R+E EQ+ +VIHNYGHGGYG+T
Sbjct: 261 KGCCSLEPTLRNARIVGEYTGFRPVRPQLRLEREQLRVGSANTEVIHNYGHGGYGLTIHW 320
Query: 119 GTSRYAVQLVKQALD 133
G + A +L + L+
Sbjct: 321 GCALEAAKLFGKILE 335
>sp|Q99489|OXDD_HUMAN D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1
Length = 341
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
LQV APW+ HF + I VTLGG R ++ ++ IL RC +L P
Sbjct: 204 LQVQAPWVEHFIRDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEP 263
Query: 71 RLEEAPVLYEWCGLRPHRSLVRVEIEQIG----RLKVIHNYGHGGYGVTTAPGTSRYAVQ 126
L A + E GLRP+R VR++ E + RL V+H+YGHG G++ GT+ A +
Sbjct: 264 SLHGACNIREKVGLRPYRPGVRLQTELLARDGQRLPVVHHYGHGSGGISVHWGTALEAAR 323
Query: 127 LVKQAL 132
LV + +
Sbjct: 324 LVSECV 329
>sp|P18894|OXDA_MOUSE D-amino-acid oxidase OS=Mus musculus GN=Dao PE=1 SV=3
Length = 345
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 11 LQVWAPWLSHFYYLDYDV--------YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
+QV APW+ HF L +D YIIP S VTLGG ++S S D +I
Sbjct: 201 IQVEAPWIKHFI-LTHDPSLGIYNSPYIIPGSK-TVTLGGIFQLGNWSGLNSVRDHNTIW 258
Query: 63 ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAP 118
+ C L P L+ A ++ E G RP R VR+E E + +VIHNYGHGGYG+T
Sbjct: 259 KSCCKLEPTLKNARIVGELTGFRPVRPQVRLEREWLRHGSSSAEVIHNYGHGGYGLTIHW 318
Query: 119 GTSRYAVQLVKQALD 133
G + A L + L+
Sbjct: 319 GCAMEAANLFGKILE 333
>sp|O07727|DAO_MYCTU Probable D-amino-acid oxidase OS=Mycobacterium tuberculosis GN=aao
PE=3 SV=1
Length = 320
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 45/71 (63%)
Query: 58 TASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTA 117
T IL+RC + PRL EA V+ GLRP R VRVE E IGR IHNYGHGG GVT +
Sbjct: 247 TERILQRCRRIQPRLAEAAVIETITGLRPDRPSVRVEAEPIGRALCIHNYGHGGDGVTLS 306
Query: 118 PGTSRYAVQLV 128
G +R V LV
Sbjct: 307 WGCAREVVNLV 317
>sp|P31228|OXDD_BOVIN D-aspartate oxidase OS=Bos taurus GN=DDO PE=1 SV=2
Length = 341
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
L+V APW+ HF + I VTLGG R ++ + IL RC +L P
Sbjct: 204 LKVQAPWVKHFIRDSSGLTYIYPGVSNVTLGGTRQKGDWNLSPDAEISKEILSRCCALEP 263
Query: 71 RLEEAPVLYEWCGLRPHRSLVRVEIEQIG----RLKVIHNYGHGGYGVTTAPGTSRYAVQ 126
L A L E GLRP R VR+E E + RL V+H+YGHG G+ GT+ A +
Sbjct: 264 SLRGAYDLREKVGLRPTRPSVRLEKELLAQDSRRLPVVHHYGHGSGGIAMHWGTALEATR 323
Query: 127 LVKQALD--PTSSLKSKL 142
LV + + T + KSKL
Sbjct: 324 LVNECVQVLRTPAPKSKL 341
>sp|A2V9Y8|OXDA_MACFA D-amino-acid oxidase OS=Macaca fascicularis GN=DAO PE=2 SV=1
Length = 347
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 11 LQVWAPWLSHFYY-------LDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILE 63
++V APW+ HF + YIIP + VTLGG +++ + D +I E
Sbjct: 203 IKVDAPWIKHFILTHEPESGIYNSPYIIPGTQ-TVTLGGIFQLGNWNELNNIQDHNTIWE 261
Query: 64 RCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAPG 119
C L P L+ A ++ E G RP R +R+E EQ+ +VIHNYGHGGYG+T G
Sbjct: 262 GCCRLEPTLKNARIVDERTGFRPVRPKIRLEREQLRVGPSNTEVIHNYGHGGYGLTIHWG 321
Query: 120 TSRYAVQLVKQALD 133
+ A +L + L+
Sbjct: 322 CALEAAKLFGRILE 335
>sp|Q922Z0|OXDD_MOUSE D-aspartate oxidase OS=Mus musculus GN=Ddo PE=2 SV=1
Length = 341
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
LQ APW+ HF + + VTLGG R ++R + I RC +L P
Sbjct: 204 LQARAPWVKHFIRDGGGLTYVYPGMSYVTLGGTRQKGDWNRSPDAELSREIFSRCCTLEP 263
Query: 71 RLEEAPVLYEWCGLRPHRSLVRVEIEQIGR----LKVIHNYGHGGYGVTTAPGTSRYAVQ 126
L A + E GLRP R VR++ E + R L V+HNYGHG G++ G++ A +
Sbjct: 264 SLHRAYDIKEKVGLRPSRPGVRLQKEILVRGQQTLPVVHNYGHGSGGISVHWGSALEATR 323
Query: 127 LVKQAL 132
LV + +
Sbjct: 324 LVMECI 329
>sp|Q556W1|OXDD_DICDI D-aspartate oxidase OS=Dictyostelium discoideum GN=ddo-1 PE=3 SV=1
Length = 346
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 25 DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWC-- 82
D+ Y+IP V LGG Y+ + ++ DT IL+R + PR + + +
Sbjct: 223 DHIAYVIPRLTNTV-LGGTNQEHDYNTNPTKKDTEEILKRVAMISPRFAKNRIEIQGVKV 281
Query: 83 GLRPHRSLVRVEIE--QIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132
GLRP R +R+E E + G V+HNYGHGG G T + G + A++LV Q L
Sbjct: 282 GLRPARHEIRLENEFFEGGSKLVVHNYGHGGSGFTVSWGCAIEAIKLVDQGL 333
>sp|O01739|OXDA1_CAEEL Putative D-amino-acid oxidase 1 OS=Caenorhabditis elegans
GN=F20H11.5 PE=1 SV=1
Length = 383
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYS-RDISRHDTASILERCYSLL 69
++V APW HF Y D+ IP + V +G + ++ +++ D I R +L
Sbjct: 230 IRVDAPWQKHFLYRDFSTITIPVID-HVYMGTVKQEGAFGPNNVTSADIQDITSRYVALQ 288
Query: 70 PRLEEAPVLYEWCGLRPHRSLVRVEIEQI------GRLKVIHNYGHGGYGVTTAPGTSRY 123
P + +L + G RP R VRVE +QI + V+HNYGH G G T G++ +
Sbjct: 289 PSFKRVHMLSSFVGYRPGRKQVRVE-KQIRETNGSKKFTVVHNYGHSGNGFTLGYGSAVH 347
Query: 124 AVQLV 128
A +V
Sbjct: 348 AAHIV 352
>sp|A8XJ44|OXDA2_CAEBR D-amino-acid oxidase 2 OS=Caenorhabditis briggsae GN=CBG13882 PE=3
SV=1
Length = 329
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
L+V P + HF+ +D Y + ++ +TLGG + R I+ + I + +P
Sbjct: 203 LKVKCPSVKHFF-IDDQFYAL-LNDTTITLGGTADRHQWDRTINPKISEKIFQENCKNIP 260
Query: 71 RLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQ 130
L A V+ LRP R VR+E E KVIHN GHGG G+T G + V+LVK+
Sbjct: 261 SLRSAQVISSHVDLRPSRVTVRLEAEPDS--KVIHNNGHGGSGITLHWGCALECVELVKK 318
Query: 131 AL 132
L
Sbjct: 319 VL 320
>sp|Q95XG9|OXDA2_CAEEL D-amino-acid oxidase 2 OS=Caenorhabditis elegans GN=Y69A2AR.5 PE=1
SV=2
Length = 322
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
L+V P + HF+ +D D Y ++ +TLGG + I+ + IL+ +P
Sbjct: 198 LKVSCPRVKHFF-ID-DKYYALLNDSTITLGGTFEAHQWDLTINSELSQKILKENIHNIP 255
Query: 71 RLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQ 130
L A +L +RP R VR++ E +GR ++HNYGHGG G+T G + ++V+
Sbjct: 256 SLRTAQILSSHVDMRPSRGTVRLQAE-LGR-SLVHNYGHGGSGITLHWGCALECAEIVEN 313
Query: 131 ALDPTSS 137
L S
Sbjct: 314 VLKMKKS 320
>sp|Q9Y7N4|OXDA_SCHPO D-amino-acid oxidase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dao1 PE=3 SV=1
Length = 348
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 27 DVYIIPHS-NGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRL------EEAPVLY 79
D YIIP NG V GG ++ R+I DT IL+R +L+P L E A ++
Sbjct: 230 DTYIIPRPLNGGVICGGFMQPGNWDREIHPEDTLDILKRTSALMPELFHGKGPEGAEIIQ 289
Query: 80 EWCGLRPHRS-LVRVEIEQIGRLKV--IHNYGHGGYGVTTAPGTSRYAVQLV 128
E G RP R RVE++ + V +H+YG G G G + +V L
Sbjct: 290 ECVGFRPSRKGGARVELDVVPGTSVPLVHDYGASGTGYQAGYGMALDSVMLA 341
>sp|Q99042|OXDA_TRIVR D-amino-acid oxidase OS=Trigonopsis variabilis GN=DAO1 PE=3 SV=1
Length = 356
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 25 DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRL-EEAP--VLYEW 81
D +YI+ +G +GGC +++S + T IL R P L ++ P ++ E
Sbjct: 239 DEALYIMTRFDGTSIIGGCFQPNNWSSEPDPSLTHRILSRALDRFPELTKDGPLDIVREC 298
Query: 82 CGLRPHRSL-VRVEIEQI-GRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132
G RP R RVE+E+I G V+HNYG G G ++ G + AV V++AL
Sbjct: 299 VGHRPGREGGPRVELEKIPGVGFVVHNYGAAGAGYQSSYGMADEAVSYVERAL 351
>sp|P24552|OXDA_FUSSO D-amino-acid oxidase OS=Fusarium solani subsp. pisi PE=1 SV=1
Length = 361
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 34 SNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAP------VLYEWCGLRPH 87
+ G LGG ++ + I++R + P + V+ G+RP
Sbjct: 248 AGGGTILGGTYDVGNWESQPDPNIANRIMQRIVEVRPEIANGKGVKGLSVIRHAVGMRPW 307
Query: 88 R-SLVRVEIEQIGRLK-VIHNYGHGGYGVTTAPGTSRYAVQLVKQALDPTSSLKSKL 142
R VR+E E++ ++HNYGH G+G + G + VQLV + + KSKL
Sbjct: 308 RKDGVRIEEEKLDDETWIVHNYGHSGWGYQGSYGCAENVVQLVDKV---GKAAKSKL 361
>sp|Q479B1|DADA_DECAR D-amino acid dehydrogenase small subunit OS=Dechloromonas aromatica
(strain RCB) GN=dadA PE=3 SV=1
Length = 418
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 40 LGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIG 99
+ G ++ Y+ +++ ++++R L PRLE WCGLRP I Q
Sbjct: 316 IAGTAEFNGYNLELNPVRCQALIDRTRQLFPRLEIVGEPTLWCGLRPATPSNVPYIGQTR 375
Query: 100 RLKVIHNYGHGGYGVTTAPGTSRYAVQLV 128
+ N GHG G T A G++ +++
Sbjct: 376 YRNLWLNTGHGTLGWTMACGSAASLAEMI 404
>sp|O31616|GLOX_BACSU Glycine oxidase OS=Bacillus subtilis (strain 168) GN=thiO PE=1 SV=1
Length = 369
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 29 YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHR 88
YI+P +G + +G +S S++++ ++LP ++ V W GLRP
Sbjct: 246 YIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPG- 304
Query: 89 SLVRVEIEQIGR----LKVIHNYGHGGYGVTTAPGTSRYAVQLV 128
+ IGR +++ GH G+ AP T L+
Sbjct: 305 --TKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLI 346
>sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodosporidium toruloides GN=DAO1 PE=1 SV=1
Length = 368
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 49/135 (36%), Gaps = 30/135 (22%)
Query: 28 VYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP------RLEEAPVLYEW 81
YIIP G V GG + ++ IL+ C L P +E VL
Sbjct: 222 AYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHN 281
Query: 82 CGLRP-HRSLVRVEIEQI-------------GR----------LKVIHNYGHGGYGVTTA 117
GLRP R RVE E+I GR + ++H YG G +
Sbjct: 282 VGLRPARRGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQS 341
Query: 118 PGTSRYAVQLVKQAL 132
G + QLV +A
Sbjct: 342 WGAAEDVAQLVDEAF 356
>sp|P33642|Y4548_PSEAE Probable D-amino acid oxidase PA4548 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4548 PE=3 SV=3
Length = 364
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 29 YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHR 88
Y IP +G + +G + + + + S+ LLP L + + W GLRP
Sbjct: 246 YAIPRRDGHILIGSTLEHSGFDKTPTDEAQESLRASAAELLPELADMQPVAHWAGLRPGS 305
Query: 89 SLVRVEIEQIGRLKVIH----NYGHGGYGVTTAPGTSRYAVQLV 128
I IG + N GH G+ AP + R L+
Sbjct: 306 P---EGIPYIGPVPGFDGLWLNTGHYRNGLVLAPASCRLLADLM 346
>sp|B4RR07|DADA_NEIG2 D-amino acid dehydrogenase small subunit OS=Neisseria gonorrhoeae
(strain NCCP11945) GN=dadA PE=3 SV=1
Length = 419
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLR 85
Y V I N + +GG Y + ++ L P + W GLR
Sbjct: 298 YKVAITRFDN-RIRVGGMAELSGYETKLPEKRRETLALVVNDLFPEGGDLSQALSWSGLR 356
Query: 86 PHRSLVRVEIEQIGRLK---VIHNYGHGGYGVTTAPGTSRYAVQLV 128
P + IGR + + N GHG G T +PG+++ +V
Sbjct: 357 P---MTPDSTPLIGRTRFENLFLNTGHGTLGWTMSPGSAKLTADIV 399
>sp|Q5F5W1|DADA_NEIG1 D-amino acid dehydrogenase small subunit OS=Neisseria gonorrhoeae
(strain ATCC 700825 / FA 1090) GN=dadA PE=3 SV=1
Length = 419
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLR 85
Y V I N + +GG Y + ++ L P + W GLR
Sbjct: 298 YKVAITRFDN-RIRVGGMAELSGYETKLPEKRRETLALVVNDLFPEGGDLSQALSWSGLR 356
Query: 86 PHRSLVRVEIEQIGRLK---VIHNYGHGGYGVTTAPGTSRYAVQLV 128
P + IGR + + N GHG G T +PG+++ +V
Sbjct: 357 P---MTPDSTPLIGRTRFENLFLNTGHGTLGWTMSPGSAKLTADIV 399
>sp|B4RBL4|DADA_PHEZH D-amino acid dehydrogenase small subunit OS=Phenylobacterium
zucineum (strain HLK1) GN=dadA PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 38 VTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQ 97
V +GG Y + A++ SL + P WCGLRP I +
Sbjct: 309 VRIGGLAELAGYDLSLRPSRRATLEHSAGSLFGGSCDLPSATFWCGLRPMTPTSTPRIGE 368
Query: 98 IGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQ---ALDPT 135
++ N GHG G T A G+++ V + ALD T
Sbjct: 369 APLRRLFLNTGHGTLGWTMACGSAQVLADAVGRQAPALDLT 409
>sp|Q4L575|PUR7_STAHJ Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=purC
PE=3 SV=1
Length = 234
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 24 LDYDVYIIPHSNGAVTLGG------CRHYDSYS-----RDISRHDTASILERCYSLLPRL 72
+D+ V S+G + L CR +D YS +D+ R+DT S+++ + L +L
Sbjct: 171 VDFKVEFGKTSDGKILLADEISPDTCRIWDKYSDTNFDKDVYRNDTGSLIDTYTTFLNKL 230
Query: 73 EE 74
EE
Sbjct: 231 EE 232
>sp|A5V4F9|DADA_SPHWW D-amino acid dehydrogenase small subunit OS=Sphingomonas wittichii
(strain RW1 / DSM 6014 / JCM 10273) GN=dadA PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%)
Query: 38 VTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQ 97
+ +GG YS D+ A++ SL P + W GLRP I
Sbjct: 309 IRVGGMAEISGYSNDLPPARRATLDHCVGSLFPDAGDLSQASFWTGLRPMTPDGTPVIGA 368
Query: 98 IGRLKVIHNYGHGGYGVTTAPGTSRYAVQLV 128
G + N GHG G T A G+ ++
Sbjct: 369 TGYRNLFLNTGHGTLGWTMACGSGHVIADII 399
>sp|Q3M859|THIOG_ANAVT Bifunctional protein ThiO/ThiG OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=thiO/thiG PE=3 SV=1
Length = 652
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 27 DVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRP 86
++YI+P + ++ +G ++ + ++L+ L P+L++ P+ W G RP
Sbjct: 243 NIYIVPRRDRSIIIGATSEDVGFTPHNTPAGIQTLLQGAIRLYPQLQDYPIQEFWWGFRP 302
>sp|Q8YRC9|THIOG_NOSS1 Bifunctional protein ThiO/ThiG OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=thiO/thiG PE=3 SV=1
Length = 652
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 27 DVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRP 86
++YI+P ++ +G ++ + ++L+ L P+L++ P+ W G RP
Sbjct: 243 NIYIVPRRERSIIVGATSEDVGFTPHNTPAGIQTLLQGAIRLYPQLQDYPIQEFWWGFRP 302
Query: 87 HRSLVRVEIEQIGRLKVIH------NYGHGGYGVTTAPGTSRYAVQL-VKQALDPTSS 137
+++ L H GH G+ AP T+ L V+Q DP S
Sbjct: 303 ATP------DELPILGTSHCPNLTLATGHYRNGILLAPITAALIADLIVEQKSDPLLS 354
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 76 PVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYG 113
P L++W RP+R + V I R KVI YG G G
Sbjct: 63 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTG 100
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 76 PVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYG 113
P L++W RP+R + V I R KVI YG G G
Sbjct: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTG 98
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 76 PVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYG 113
P L++W RP+R + V I R KVI YG G G
Sbjct: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTG 98
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 76 PVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYG 113
P L++W RP+R + V I R KVI YG G G
Sbjct: 63 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTG 100
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 76 PVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYG 113
P L++W RP+R + V I R KVI YG G G
Sbjct: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTG 98
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 76 PVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYG 113
P L++W RP+R + V I R KVI YG G G
Sbjct: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTG 98
>sp|G3XD12|HCNC_PSEAE Hydrogen cyanide synthase subunit HcnC OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=hcnC PE=1 SV=1
Length = 417
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 27 DVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRP 86
D Y+ NG + +G + + + A +++ +P L++ + W GLRP
Sbjct: 286 DCYMAQKDNGEILIGSTTEDKGFDVSNTFPEIAGLVQGAVRCVPELQQVNLKRTWAGLRP 345
>sp|A8I711|DADA_AZOC5 D-amino acid dehydrogenase small subunit OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=dadA PE=3 SV=1
Length = 417
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 37/94 (39%)
Query: 38 VTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQ 97
+ +GG +++D+ A++ L + WCGLRP I +
Sbjct: 309 IRVGGMAEIARFNKDLPPARQATLTLSVEDLFGGAGDQKKAEFWCGLRPMTPDGTPIIGK 368
Query: 98 IGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131
+ N GHG G T + G++R ++ A
Sbjct: 369 TKFGNLFLNGGHGTLGWTMSCGSARLLSDIISGA 402
>sp|P58739|DADA_AGRT5 D-amino acid dehydrogenase small subunit OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=dadA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 33/91 (36%)
Query: 38 VTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQ 97
+ GG +S+D+ ++ L + WCGLRP I
Sbjct: 309 IRAGGMAEIAGFSKDLPAARQETLAHSVEDLFGGAGDQSQAKFWCGLRPMTPDGTPVIGA 368
Query: 98 IGRLKVIHNYGHGGYGVTTAPGTSRYAVQLV 128
+ N GHG G T + G++R L+
Sbjct: 369 TRYSNLYLNTGHGTLGWTMSCGSARVLADLI 399
>sp|Q9USM5|UBP1_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp1 PE=3 SV=1
Length = 849
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 17 WLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDIS 54
WLS + YD+Y + + +G ++ G HY +Y+RD S
Sbjct: 781 WLSSQKSMLYDLYAVDNHHGFMSNG---HYTAYARDAS 815
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,828,024
Number of Sequences: 539616
Number of extensions: 2179461
Number of successful extensions: 4366
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4298
Number of HSP's gapped (non-prelim): 47
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)