Query psy5260
Match_columns 142
No_of_seqs 171 out of 1133
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:51:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02352 thiamin_ThiO glycine 99.9 7.5E-23 1.6E-27 158.8 11.8 128 3-131 201-336 (337)
2 TIGR03197 MnmC_Cterm tRNA U-34 99.9 4.2E-23 9.2E-28 164.0 10.5 127 3-132 201-363 (381)
3 KOG3923|consensus 99.9 4.8E-22 1E-26 151.4 11.4 130 3-133 204-338 (342)
4 PRK01747 mnmC bifunctional tRN 99.9 2E-21 4.3E-26 164.3 10.8 129 3-133 474-635 (662)
5 TIGR01373 soxB sarcosine oxida 99.9 1.2E-20 2.5E-25 151.0 13.0 127 3-131 253-385 (407)
6 COG0665 DadA Glycine/D-amino a 99.8 9.8E-21 2.1E-25 149.7 11.3 131 3-134 226-370 (387)
7 PRK00711 D-amino acid dehydrog 99.8 3.7E-20 8.1E-25 148.1 11.7 129 3-133 270-404 (416)
8 PRK11259 solA N-methyltryptoph 99.8 1.9E-19 4E-24 142.2 11.1 127 3-132 215-361 (376)
9 PRK12409 D-amino acid dehydrog 99.8 1.9E-19 4E-24 144.2 11.1 126 3-132 271-407 (410)
10 TIGR03329 Phn_aa_oxid putative 99.8 1.4E-18 3E-23 141.5 12.6 128 3-131 248-394 (460)
11 TIGR03364 HpnW_proposed FAD de 99.8 1.9E-18 4.1E-23 136.3 9.0 93 27-122 270-364 (365)
12 TIGR01377 soxA_mon sarcosine o 99.7 6E-17 1.3E-21 128.0 13.1 128 3-132 213-361 (380)
13 PF01266 DAO: FAD dependent ox 99.7 2.7E-16 5.8E-21 122.0 11.3 122 3-127 216-358 (358)
14 PRK11728 hydroxyglutarate oxid 99.6 8.7E-15 1.9E-19 116.9 9.5 126 3-128 219-393 (393)
15 TIGR03377 glycerol3P_GlpA glyc 99.5 8.3E-13 1.8E-17 109.1 13.7 127 3-133 203-349 (516)
16 PRK11101 glpA sn-glycerol-3-ph 99.5 1.7E-12 3.8E-17 108.0 15.2 127 3-133 224-372 (546)
17 PRK13369 glycerol-3-phosphate 99.4 5.2E-12 1.1E-16 104.2 13.5 129 3-134 231-380 (502)
18 KOG2853|consensus 99.4 3.3E-12 7.2E-17 100.0 9.5 128 3-131 342-482 (509)
19 PLN02464 glycerol-3-phosphate 99.3 2.2E-11 4.9E-16 102.9 13.6 127 3-131 311-454 (627)
20 PRK12266 glpD glycerol-3-phosp 99.3 4.2E-11 9.1E-16 99.0 13.7 129 3-134 232-381 (508)
21 KOG2852|consensus 99.3 1.7E-11 3.6E-16 94.1 7.3 98 32-132 258-364 (380)
22 KOG2844|consensus 98.8 2.4E-08 5.1E-13 83.9 9.2 126 3-130 256-400 (856)
23 KOG2820|consensus 98.8 3.4E-08 7.3E-13 77.4 8.6 79 55-134 301-381 (399)
24 COG0578 GlpA Glycerol-3-phosph 98.4 9.6E-06 2.1E-10 67.5 14.0 128 3-135 242-390 (532)
25 COG0579 Predicted dehydrogenas 97.9 3.9E-05 8.4E-10 62.5 7.0 128 3-131 226-375 (429)
26 KOG0042|consensus 97.7 0.00041 8.9E-09 57.8 9.9 131 2-136 301-455 (680)
27 KOG2665|consensus 97.6 0.00019 4.2E-09 56.5 5.9 127 3-129 272-452 (453)
28 PRK13339 malate:quinone oxidor 95.6 0.06 1.3E-06 45.0 7.5 126 2-128 263-449 (497)
29 TIGR02032 GG-red-SF geranylger 95.3 0.13 2.7E-06 38.8 7.9 93 26-128 195-295 (295)
30 TIGR01320 mal_quin_oxido malat 94.8 0.35 7.6E-06 40.2 9.8 66 62-128 366-442 (483)
31 TIGR01790 carotene-cycl lycope 88.4 8.7 0.00019 30.4 10.3 98 27-134 196-302 (388)
32 PRK06185 hypothetical protein; 82.8 14 0.0003 29.4 9.0 101 24-132 209-322 (407)
33 PRK05257 malate:quinone oxidor 80.9 2.2 4.7E-05 35.7 3.8 128 3-130 263-449 (494)
34 PF05834 Lycopene_cycl: Lycope 80.7 27 0.00058 27.8 10.4 60 26-89 185-245 (374)
35 PRK10157 putative oxidoreducta 78.4 1.3 2.8E-05 36.1 1.7 28 107-134 310-337 (428)
36 PLN02697 lycopene epsilon cycl 74.6 35 0.00075 29.0 9.2 61 26-90 305-366 (529)
37 TIGR01789 lycopene_cycl lycope 74.4 43 0.00092 26.8 10.3 80 7-90 150-240 (370)
38 PRK07233 hypothetical protein; 71.9 24 0.00053 28.0 7.5 76 54-132 342-431 (434)
39 PTZ00383 malate:quinone oxidor 69.0 9.2 0.0002 32.1 4.5 72 62-134 398-477 (497)
40 PLN02463 lycopene beta cyclase 65.4 78 0.0017 26.2 10.2 99 26-134 227-334 (447)
41 COG0644 FixC Dehydrogenases (f 63.1 70 0.0015 25.6 8.4 105 25-134 197-309 (396)
42 PLN02487 zeta-carotene desatur 62.0 27 0.00058 29.9 6.0 86 51-138 461-559 (569)
43 PLN02612 phytoene desaturase 61.8 31 0.00068 29.3 6.4 81 51-134 451-550 (567)
44 TIGR02730 carot_isom carotene 60.4 40 0.00088 27.8 6.8 33 100-132 458-492 (493)
45 TIGR03419 NifU_clost FeS clust 59.1 19 0.00042 24.1 3.9 48 82-131 26-74 (121)
46 TIGR02733 desat_CrtD C-3',4' d 58.8 41 0.00088 27.7 6.5 31 100-130 458-490 (492)
47 PRK10015 oxidoreductase; Provi 56.3 79 0.0017 25.8 7.7 34 101-134 304-337 (429)
48 PRK11325 scaffold protein; Pro 54.5 27 0.00059 23.6 4.1 46 85-131 34-80 (127)
49 TIGR01999 iscU FeS cluster ass 54.4 29 0.00062 23.4 4.2 46 85-131 32-78 (124)
50 TIGR01994 SUF_scaf_2 SUF syste 53.1 29 0.00063 23.8 4.1 48 82-131 30-78 (137)
51 cd06664 IscU_like Iron-sulfur 51.6 34 0.00074 22.7 4.2 31 101-131 45-75 (123)
52 PRK05257 malate:quinone oxidor 50.9 6.7 0.00015 32.8 0.7 16 117-132 432-447 (494)
53 TIGR02732 zeta_caro_desat caro 49.5 61 0.0013 26.8 6.1 76 52-128 386-473 (474)
54 PLN02576 protoporphyrinogen ox 49.1 48 0.001 27.2 5.4 86 53-138 395-493 (496)
55 TIGR02023 BchP-ChlP geranylger 46.4 1.5E+02 0.0032 23.5 10.4 95 26-134 203-304 (388)
56 TIGR02028 ChlP geranylgeranyl 45.5 1.6E+02 0.0034 23.7 9.6 96 26-134 207-310 (398)
57 TIGR03467 HpnE squalene-associ 42.5 96 0.0021 24.4 6.1 74 53-129 331-418 (419)
58 TIGR02734 crtI_fam phytoene de 39.8 41 0.00088 27.8 3.7 37 100-136 458-496 (502)
59 COG0822 IscU NifU homolog invo 38.4 35 0.00076 24.0 2.7 31 101-131 51-81 (150)
60 TIGR02000 NifU_proper Fe-S clu 36.2 71 0.0015 24.9 4.3 46 86-131 33-79 (290)
61 PF14606 Lipase_GDSL_3: GDSL-l 35.7 45 0.00099 24.1 3.0 24 103-127 35-58 (178)
62 PHA02540 61 DNA primase; Provi 31.2 1.1E+02 0.0024 24.5 4.7 59 62-120 7-72 (337)
63 PF01592 NifU_N: NifU-like N t 30.5 37 0.00081 22.8 1.7 48 83-131 29-78 (126)
64 PF02474 NodA: Nodulation prot 27.2 67 0.0015 23.4 2.6 38 51-88 13-55 (196)
65 PRK08773 2-octaprenyl-3-methyl 23.2 3.7E+02 0.0081 21.1 6.9 24 109-132 297-320 (392)
66 PLN00093 geranylgeranyl diphos 22.7 4.4E+02 0.0095 21.7 9.2 97 26-134 246-349 (450)
67 PLN03153 hypothetical protein; 22.6 68 0.0015 27.4 2.2 27 106-132 259-285 (537)
68 PF12173 BacteriocIIc_cy: Bact 21.9 1.3E+02 0.0027 19.1 2.7 28 100-129 31-58 (91)
69 PF07494 Reg_prop: Two compone 20.5 1E+02 0.0022 14.2 1.7 14 29-42 9-22 (24)
No 1
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.89 E-value=7.5e-23 Score=158.80 Aligned_cols=128 Identities=25% Similarity=0.400 Sum_probs=109.4
Q ss_pred eeeccceEEEEeCCC---cce---EEEeCCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCc
Q psy5260 3 CLLVCSTPLQVWAPW---LSH---FYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAP 76 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~---~~~---~i~~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~ 76 (142)
+.|+|||++.++.+. ... ....+...|++|+.+|++++|++.+...++..++.+..+.+.+++.++||.+.+.+
T Consensus 201 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~ 280 (337)
T TIGR02352 201 LRPVRGQPLRLEAPAVPLLNRPLRAVVYGRRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEAR 280 (337)
T ss_pred ccccCceEEEeeccccccCCcccceEEEcCCEEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcccCc
Confidence 579999999998651 111 12223457999999999999999887767777888899999999999999999999
Q ss_pred eeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 77 VLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 77 v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
+.+.|+|+||+|+| |+||.. +..+|+|+++||+|+||+++|++|+.+|++|.+.
T Consensus 281 ~~~~~~g~r~~t~D~~piig~~-~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 281 LLETWAGLRPGTPDNLPYIGEH-PEDRRLLIATGHYRNGILLAPATAEVIADLILGK 336 (337)
T ss_pred HHHheecCCCCCCCCCCEeCcc-CCCCCEEEEcccccCceehhhHHHHHHHHHHhcC
Confidence 99999999999999 999975 4568999999999999999999999999999863
No 2
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.89 E-value=4.2e-23 Score=163.98 Aligned_cols=127 Identities=21% Similarity=0.168 Sum_probs=109.2
Q ss_pred eeeccceEEEEeCCC----cceEEEeCCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCC-----
Q psy5260 3 CLLVCSTPLQVWAPW----LSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE----- 73 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~----~~~~i~~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~----- 73 (142)
+.|+|||++.++.+. ++..+.. ..|++|..+|++++|++.+....+..++.+..+.+++.+.+++|.++
T Consensus 201 i~p~rg~~~~~~~~~~~~~~~~~~~~--~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~ 278 (381)
T TIGR03197 201 LRPVRGQVSHLPATEALSALKTVLCY--DGYLTPANNGEHCIGASYDRNDDDLALREADHAENLERLAECLPALAWASEV 278 (381)
T ss_pred ccccccceeeccCCCcccccCceEeC--CceecccCCCceEeecccCCCCCCCCcCHHHHHHHHHHHHHhCcccchhhcc
Confidence 579999999998642 2333332 35999999999999999887666777788889999999999999987
Q ss_pred CCceeeeeEeeecCCCC--ceeeEeeeC-------------------------cceEEEEeccCCCccchhHHHHHHHHH
Q psy5260 74 EAPVLYEWCGLRPHRSL--VRVEIEQIG-------------------------RLKVIHNYGHGGYGVTTAPGTSRYAVQ 126 (142)
Q Consensus 74 ~~~v~~~w~G~Rp~t~D--p~ig~~~~~-------------------------~~~l~~~~G~gg~G~t~ap~~a~~la~ 126 (142)
+.++.+.|+|+||.|+| |+||+. ++ .+|+|+++||+|+||+++|++|+++|+
T Consensus 279 ~~~~~~~~~G~r~~t~D~~Piig~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~ 357 (381)
T TIGR03197 279 DISALQGRVGVRCASPDHLPLVGAV-PDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAA 357 (381)
T ss_pred CccccCceEEEeccCCCcCccCCCC-CCHHHHHHHHHHhcccccccccccCCCCCCeEEEecccchHHHHHHHHHHHHHH
Confidence 78999999999999999 999975 34 689999999999999999999999999
Q ss_pred HHHhhc
Q psy5260 127 LVKQAL 132 (142)
Q Consensus 127 ~i~g~~ 132 (142)
+|++.-
T Consensus 358 ~i~~~~ 363 (381)
T TIGR03197 358 QICGEP 363 (381)
T ss_pred HHhCCC
Confidence 998763
No 3
>KOG3923|consensus
Probab=99.88 E-value=4.8e-22 Score=151.39 Aligned_cols=130 Identities=45% Similarity=0.779 Sum_probs=114.9
Q ss_pred eeeccceEEEEeCCCcceEEEeCCe-EEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeeee
Q psy5260 3 CLLVCSTPLQVWAPWLSHFYYLDYD-VYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEW 81 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~~~~~i~~~~~-~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w 81 (142)
+.|+||||+.+++|+.+++++.+.. .|++|..+ .+++||+.+.++++.++++++...++++..++.|+|+.+++++.|
T Consensus 204 ~yPiRGqVl~V~ApWvkhf~~~D~~~ty~iP~~~-~V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~aL~P~l~~a~ii~E~ 282 (342)
T KOG3923|consen 204 LYPIRGQVLKVDAPWVKHFIYRDFSRTYIIPGTE-SVTLGGTKQEGNWNLEITDEDRRDILERCCALEPSLRHAEIIREW 282 (342)
T ss_pred eeeccceEEEeeCCceeEEEEecCCccEEecCCc-eEEEccccccCcccCcCChhhHHHHHHHHHHhCcccccceehhhh
Confidence 6899999999999999999985444 59999876 899999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCceeeEeeeC----cceEEEEeccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 82 CGLRPHRSLVRVEIEQIG----RLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 82 ~G~Rp~t~Dp~ig~~~~~----~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
+|+||..+--++...... ..-|++++||||+|+|+++++|-..+.++...++
T Consensus 283 vGlRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~~~l~ 338 (342)
T KOG3923|consen 283 VGLRPGRKQVRLEAELRTRGGKRLTVVHNYGHGGNGFTLGWGTALEAAKLVLDALG 338 (342)
T ss_pred hcccCCCCceeeeeeeecCCCccceeEeeccCCCCceecccchHHHHHHHHHHHhh
Confidence 999999988555543211 2236999999999999999999999999988864
No 4
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.86 E-value=2e-21 Score=164.33 Aligned_cols=129 Identities=18% Similarity=0.135 Sum_probs=108.7
Q ss_pred eeeccceEEEEeCCC----cceEEEeCCeEEEEE-ccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCC-----
Q psy5260 3 CLLVCSTPLQVWAPW----LSHFYYLDYDVYIIP-HSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRL----- 72 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~----~~~~i~~~~~~y~~p-~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l----- 72 (142)
+.|+|||++.++.+. ++..+.. ..|++| ..+|.+++|+|++.++.+..++.+..+.+++++.+++|.+
T Consensus 474 l~p~RGqv~~~~~~~~~~~~~~~~~~--~~Y~~p~~~~g~~~iGat~~~~~~~~~~~~~~~~~~~~~l~~~~P~l~~~~~ 551 (662)
T PRK01747 474 LYSVRGQVSHLPTTPALSALKQVLCY--DGYLTPQPANGTHCIGASYDRDDTDTAFREADHQENLERLAECLPQALWAKE 551 (662)
T ss_pred cccccceEEeecCCccccccCceeEC--CceeCCCCCCCceEeCcccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhc
Confidence 579999999987642 2333333 359999 7888999999998877778888888999999999999987
Q ss_pred CCCceeeeeEeeecCCCC--ceeeEe---------------------eeCcceEEEEeccCCCccchhHHHHHHHHHHHH
Q psy5260 73 EEAPVLYEWCGLRPHRSL--VRVEIE---------------------QIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVK 129 (142)
Q Consensus 73 ~~~~v~~~w~G~Rp~t~D--p~ig~~---------------------~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~ 129 (142)
.+.++.+.|+|+||+|+| |+||.. .+..+|+|+++||||+||++||++|+++|++|+
T Consensus 552 ~~~~~~~~~aG~R~~tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~gl~v~~G~gs~Gl~~ap~~a~~lA~li~ 631 (662)
T PRK01747 552 VDVSALQGRVGFRCASRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRLPGLYVAGALGSRGLCSAPLGAELLASQIE 631 (662)
T ss_pred cCccccCceEEEeccCCCcccccCCCCCHHHHHHHHHhhhhccccccCCCCCCeEEEecccccHHHHHHHHHHHHHHHHh
Confidence 577889999999999999 999972 134679999999999999999999999999998
Q ss_pred hhcC
Q psy5260 130 QALD 133 (142)
Q Consensus 130 g~~~ 133 (142)
|...
T Consensus 632 g~~~ 635 (662)
T PRK01747 632 GEPL 635 (662)
T ss_pred CCCC
Confidence 8643
No 5
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.85 E-value=1.2e-20 Score=150.96 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=104.7
Q ss_pred eeeccceEEEEeCC--CcceEEE-eCCeEEEEEccCCeEEEcccee-cCCCCCCCCHHHHHHHHHHHHhhCCCCCCCcee
Q psy5260 3 CLLVCSTPLQVWAP--WLSHFYY-LDYDVYIIPHSNGAVTLGGCRH-YDSYSRDISRHDTASILERCYSLLPRLEEAPVL 78 (142)
Q Consensus 3 ~~p~rGqv~~~~~p--~~~~~i~-~~~~~y~~p~~~g~~~iG~t~~-~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~ 78 (142)
+.|.++|++..++. .++.++. .+...|++|..+|++++|++.+ ...++..++.+..+.+++.+.+++|.+++.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~ 332 (407)
T TIGR01373 253 IESHPLQALVSEPLKPIIDTVVMSNAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVRML 332 (407)
T ss_pred cCcccceEEEecCCCCCcCCeEEeCCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCcCCCCeE
Confidence 35778898877642 2333443 3346899999999999998765 334455567788899999999999999999999
Q ss_pred eeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 79 YEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 79 ~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
+.|+|+||+|+| |+||.. + .+|+|+++||+|+|+++||++|+++|++|.+.
T Consensus 333 ~~w~G~~~~t~D~~PiIg~~-~-~~gl~~a~G~~g~G~~~ap~~G~~la~li~~~ 385 (407)
T TIGR01373 333 RSWGGIVDVTPDGSPIIGKT-P-LPNLYLNCGWGTGGFKATPASGTVFAHTLARG 385 (407)
T ss_pred EEeccccccCCCCCceeCCC-C-CCCeEEEeccCCcchhhchHHHHHHHHHHhCC
Confidence 999999999999 999975 3 58999999999999999999999999999765
No 6
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.85 E-value=9.8e-21 Score=149.69 Aligned_cols=131 Identities=26% Similarity=0.311 Sum_probs=106.7
Q ss_pred eeeccceEEEEeCCCc--c------eEEEeCCeEEEEEccCCeEEEccceecCC-CCCCCCHH--HHHHHHHHHHhhCCC
Q psy5260 3 CLLVCSTPLQVWAPWL--S------HFYYLDYDVYIIPHSNGAVTLGGCRHYDS-YSRDISRH--DTASILERCYSLLPR 71 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~~--~------~~i~~~~~~y~~p~~~g~~~iG~t~~~~~-~~~~~~~~--~~~~l~~~~~~~~P~ 71 (142)
+.|+|||++.++++.. . .....+...|++|..+|++++|++.+... ++.+.... ...++.+.+.+++|.
T Consensus 226 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~ 305 (387)
T COG0665 226 LRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPG 305 (387)
T ss_pred cccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHHHHHHHhCcc
Confidence 6899999999997531 1 22223445799999899999999988753 33333333 367999999999999
Q ss_pred CCCCceeeeeEeeecCC-CC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 72 LEEAPVLYEWCGLRPHR-SL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 72 l~~~~v~~~w~G~Rp~t-~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
+.+..+.+.|+|+||++ +| |+||...+ .+|+|+++||+++||+++|++|+++|++|.|.-.+
T Consensus 306 l~~~~~~~~w~g~~~~t~pd~~P~iG~~~~-~~~l~~a~G~~~~G~~~~p~~g~~lA~li~g~~~~ 370 (387)
T COG0665 306 LADAGIEAAWAGLRPPTTPDGLPVIGRAAP-LPNLYVATGHGGHGFTLAPALGRLLADLILGGEPE 370 (387)
T ss_pred ccccccceeeeccccCCCCCCCceeCCCCC-CCCEEEEecCCCcChhhccHHHHHHHHHHcCCCCC
Confidence 99999999999999988 99 99996334 78999999999999999999999999999997443
No 7
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.83 E-value=3.7e-20 Score=148.11 Aligned_cols=129 Identities=17% Similarity=0.148 Sum_probs=103.8
Q ss_pred eeeccceEEEEeCCC---cc-eEEEeCCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCcee
Q psy5260 3 CLLVCSTPLQVWAPW---LS-HFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVL 78 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~---~~-~~i~~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~ 78 (142)
+.|+|||++.++.+. .. ..+......+..++.+|++++|++.+...++..++++..+.+.+.+.++||.+.+.++.
T Consensus 270 i~p~rg~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~ 349 (416)
T PRK00711 270 VYPLKGYSLTVPITDEDRAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGGDLSQA 349 (416)
T ss_pred cCCccceEEEEecCCCCCCCceeEEecccCEEEeecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCccccccc
Confidence 578999988775321 11 11222222345566678999999887766677778888899999999999999999999
Q ss_pred eeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 79 YEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 79 ~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
+.|+|+||+|+| |+||.. + .+|+|+++||+|+||++||++|+++|++|.|.-.
T Consensus 350 ~~w~G~r~~t~D~~PiIG~~-~-~~gl~~a~G~~g~G~~~ap~~g~~la~li~g~~~ 404 (416)
T PRK00711 350 TFWTGLRPMTPDGTPIVGAT-R-YKNLWLNTGHGTLGWTMACGSGQLLADLISGRKP 404 (416)
T ss_pred ceeeccCCCCCCCCCEeCCc-C-CCCEEEecCCchhhhhhhhhHHHHHHHHHcCCCC
Confidence 999999999999 999975 2 5899999999999999999999999999988643
No 8
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.81 E-value=1.9e-19 Score=142.15 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=99.2
Q ss_pred eeeccceEEEEeCCC-----c--ceEEE---eCCeEEEEEccCCe-EEEccceec------CCCCCCCC-HHHHHHHHHH
Q psy5260 3 CLLVCSTPLQVWAPW-----L--SHFYY---LDYDVYIIPHSNGA-VTLGGCRHY------DSYSRDIS-RHDTASILER 64 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~-----~--~~~i~---~~~~~y~~p~~~g~-~~iG~t~~~------~~~~~~~~-~~~~~~l~~~ 64 (142)
+.|+|+|++.++++. . ..++. .+..+|++|+.+|+ +++|++... .+.+...+ ++..+.+.+.
T Consensus 215 i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (376)
T PRK11259 215 LTPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPF 294 (376)
T ss_pred ceEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHH
Confidence 578999999998531 1 11211 22337889998888 999987751 11122222 5678999999
Q ss_pred HHhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 65 CYSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 65 ~~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+.++||.+.+ +.+.|+|+||+|+| |+||.. ++.+|+|+++||+|||++++|++|+.+|++|.+.-
T Consensus 295 ~~~~~P~~~~--~~~~~~g~~~~t~D~~P~ig~~-~~~~gl~~~~G~~g~G~~~ap~~g~~la~li~~~~ 361 (376)
T PRK11259 295 LRNYLPGVGP--CLRGAACTYTNTPDEHFIIDTL-PGHPNVLVASGCSGHGFKFASVLGEILADLAQDGT 361 (376)
T ss_pred HHHHCCCCCc--cccceEEecccCCCCCceeecC-CCCCCEEEEecccchhhhccHHHHHHHHHHHhcCC
Confidence 9999998876 88999999999999 999975 45789999999999999999999999999998753
No 9
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.81 E-value=1.9e-19 Score=144.16 Aligned_cols=126 Identities=25% Similarity=0.339 Sum_probs=100.2
Q ss_pred eeeccceEEEEeCCC------cceE-EEeCCeEEEEE--ccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCC
Q psy5260 3 CLLVCSTPLQVWAPW------LSHF-YYLDYDVYIIP--HSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE 73 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~------~~~~-i~~~~~~y~~p--~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~ 73 (142)
+.|+|||++.++.+. .... +..+ ..|+.+ ..+|++++|++.+....+..++.+..+.+.+++.++||.++
T Consensus 271 i~p~~g~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~ 349 (410)
T PRK12409 271 VYPVKGYSITVNLDDEASRAAAPWVSLLDD-SAKIVTSRLGADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPDVS 349 (410)
T ss_pred cccCCceEEEeecCCccccccCCceeeeec-CCcEEEEecCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 578999998876421 1111 2222 223433 24567889999887666777788899999999999999998
Q ss_pred CCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 74 EAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 74 ~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+.++. .|+|+||+|+| |+||+. ..+|+|+++||+++|+++||++|+++|++|.+..
T Consensus 350 ~~~~~-~w~G~r~~t~D~~PiiG~~--~~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~~~~ 407 (410)
T PRK12409 350 TRRVV-PWAGLRPMMPNMMPRVGRG--RRPGVFYNTGHGHLGWTLSAATADLVAQVVAQKL 407 (410)
T ss_pred ccccc-eecccCCCCCCCCCeeCCC--CCCCEEEecCCcccchhhcccHHHHHHHHHcCCC
Confidence 88766 79999999999 999974 2689999999999999999999999999998764
No 10
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.79 E-value=1.4e-18 Score=141.55 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=97.9
Q ss_pred eeeccceEEEEeCCC--cc-------eEEEeCC--eEEEEEccCCeEEEccceec---CCC-C--CCCCHHHHHHHHHHH
Q psy5260 3 CLLVCSTPLQVWAPW--LS-------HFYYLDY--DVYIIPHSNGAVTLGGCRHY---DSY-S--RDISRHDTASILERC 65 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~--~~-------~~i~~~~--~~y~~p~~~g~~~iG~t~~~---~~~-~--~~~~~~~~~~l~~~~ 65 (142)
+.|+++|++.+++.. +. ..+.... ..|++++.||++++|+.... ... + ........+.+.+.+
T Consensus 248 ~~p~~~~~~~t~pl~~~~~~~~~~~~~~~~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (460)
T TIGR03329 248 IAIVSSDMVITEPAPDLLAATGLDHGTSVLDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSL 327 (460)
T ss_pred EEEeccceEecCCCcHHHHhhcCCCCceEecchhhhhheeECCCCcEEEcCCccccccCcccccccCCchHHHHHHHHHH
Confidence 467889988877521 11 1122211 25899999999999975321 111 1 112234467899999
Q ss_pred HhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 66 YSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 66 ~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
.++||.+++.++.+.|+|+|++|+| |+||.. +..+|+|+++||+|+|+++||++|+++|++|.|.
T Consensus 328 ~~~fP~L~~~~i~~~W~G~~~~t~D~~P~iG~~-~~~~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g~ 394 (460)
T TIGR03329 328 RKFFPALAEVPIAASWNGPSDRSVTGLPFFGRL-NGQPNVFYGFGYSGNGVAPSRMGGQILSSLVLGL 394 (460)
T ss_pred HHhCCCcCCCeeeEEEeceeCCCCCCCceeeee-cCCCCEEEEeCcCCCChhHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999 999975 3568999999999999999999999999999885
No 11
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.76 E-value=1.9e-18 Score=136.28 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=74.5
Q ss_pred eEEEEEccCCeEEEccceecCCCCC-CCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC-ceeeEeeeCcceEE
Q psy5260 27 DVYIIPHSNGAVTLGGCRHYDSYSR-DISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-VRVEIEQIGRLKVI 104 (142)
Q Consensus 27 ~~y~~p~~~g~~~iG~t~~~~~~~~-~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D-p~ig~~~~~~~~l~ 104 (142)
.+|++|+.+|++++|++.+....+. ..+.+..+.+.+.+.+++ .+++.++.+.|+|+||+|+| |.++.. . .+|+|
T Consensus 270 ~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~t~d~~~v~~~-~-~~g~~ 346 (365)
T TIGR03364 270 HLMVSQNPDGELIIGDSHEYGLAPDPFDDEEIDNLILAEAKTIL-GLPDLDIVERWQGVYASSPPAPIFLER-P-DDGVT 346 (365)
T ss_pred EEEEEECCCCCEEecCcccccCCCCCcchHHHHHHHHHHHHHhc-CCCCCceEEEEeEEecCCCCCCceecC-C-CCCeE
Confidence 4799999999999999987644332 233455567788887776 68889999999999999999 444333 2 68999
Q ss_pred EEeccCCCccchhHHHHH
Q psy5260 105 HNYGHGGYGVTTAPGTSR 122 (142)
Q Consensus 105 ~~~G~gg~G~t~ap~~a~ 122 (142)
+++||+|+||++||++|+
T Consensus 347 ~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 347 VVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred EEEecCCCcccccccccC
Confidence 999999999999999986
No 12
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.73 E-value=6e-17 Score=128.02 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=95.7
Q ss_pred eeeccceEEEEeCCC---------cceEEEe--CCeEEEEEccCC-eEEEccceec-------CCCCCCCCHHHHHHHHH
Q psy5260 3 CLLVCSTPLQVWAPW---------LSHFYYL--DYDVYIIPHSNG-AVTLGGCRHY-------DSYSRDISRHDTASILE 63 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~---------~~~~i~~--~~~~y~~p~~~g-~~~iG~t~~~-------~~~~~~~~~~~~~~l~~ 63 (142)
+.|+|+|+..++.+. ...++.. +..+|++|..++ .+++++.... ..++..++....+.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (380)
T TIGR01377 213 LQPLRINVCYWREKEPGSYGVSQAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRK 292 (380)
T ss_pred ceEEEEEEEEEecCCccccCccCCCCEEEEeCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHH
Confidence 468899988876431 1112222 235799998642 3565543211 11233467778999999
Q ss_pred HHHhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 64 RCYSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 64 ~~~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
.+.+++|.+.+.. .+.|.|+||.|+| |+||+. ++.+|+|+++||+|+||+++|++|+++|++|.+.-
T Consensus 293 ~~~~~~P~l~~~~-~~~~~~~~~~t~D~~piIg~~-p~~~~l~va~G~~g~G~~~~p~~g~~la~li~~~~ 361 (380)
T TIGR01377 293 FVRDHLPGLNGEP-KKGEVCMYTNTPDEHFVIDLH-PKYDNVVIGAGFSGHGFKLAPVVGKILAELAMKLK 361 (380)
T ss_pred HHHHHCCCCCCCc-ceeeEEEeccCCCCCeeeecC-CCCCCEEEEecCCccceeccHHHHHHHHHHHhcCC
Confidence 9999999998544 6789999999999 999986 46789999999999999999999999999998763
No 13
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.69 E-value=2.7e-16 Score=121.95 Aligned_cols=122 Identities=30% Similarity=0.432 Sum_probs=94.3
Q ss_pred eeeccceEEEEeCCC--cce-EEE------eCCeEEEEEccCCeEEEccce---ecCCC-------CCCCCHHHHHHHHH
Q psy5260 3 CLLVCSTPLQVWAPW--LSH-FYY------LDYDVYIIPHSNGAVTLGGCR---HYDSY-------SRDISRHDTASILE 63 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~--~~~-~i~------~~~~~y~~p~~~g~~~iG~t~---~~~~~-------~~~~~~~~~~~l~~ 63 (142)
+.|+||+++.++... ... ... .....|++|+. |.+++|.+. ..... +.+.+.+ .+++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 293 (358)
T PF01266_consen 216 LRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIRPRP-GGVLIGTADGNYDPGPSPEDSSGEDPDVDEE-IDELLE 293 (358)
T ss_dssp EEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEEEET-TEEEEEESECEEEESSSHHHHSHHHHHHHHH-HHHHHH
T ss_pred ccccceEEEEEccCCcccccccccccccccccccceecccc-cccccccccccccccccccccccccccccHH-HHHhHH
Confidence 678999999999743 211 211 12468999998 789999322 11110 0112223 578999
Q ss_pred HHHhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHH
Q psy5260 64 RCYSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQL 127 (142)
Q Consensus 64 ~~~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~ 127 (142)
.+.+++|.+.+.++.+.|+|+||.++| |++|.. ++.+|+|+++||+|+|+++||++|+++|++
T Consensus 294 ~~~~~~p~l~~~~v~~~~~g~r~~t~d~~p~ig~~-~~~~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 294 RLARLLPGLGDAEVVRSWAGIRPFTPDGRPIIGEL-PGSPNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp HHHHHSGGGGGSEEEEEEEEEEEEETTSECEEEEE-SSEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccceeeeccCCCeeeeec-CCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999 999975 468999999999999999999999999985
No 14
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.58 E-value=8.7e-15 Score=116.86 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=95.1
Q ss_pred eeeccceEEEEeCC---CcceEEEe-------CCeEEEEEccCCeEEEcccee--c--CCCCCC-C--------------
Q psy5260 3 CLLVCSTPLQVWAP---WLSHFYYL-------DYDVYIIPHSNGAVTLGGCRH--Y--DSYSRD-I-------------- 53 (142)
Q Consensus 3 ~~p~rGqv~~~~~p---~~~~~i~~-------~~~~y~~p~~~g~~~iG~t~~--~--~~~~~~-~-------------- 53 (142)
+.|+|||++.++.+ .+++.++. ..++|++|+.+|++++|++.. . .+++.. .
T Consensus 219 v~p~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (393)
T PRK11728 219 IVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGF 298 (393)
T ss_pred eEEeeeEEEEeccccccccCCceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHHhccch
Confidence 67999999999753 24555441 236899999999999997432 2 223321 2
Q ss_pred -------CHHHHHHH---------HHHHHhhCCCCCCCceeeeeEeeec--CCCC--ceeeEeeeCcceEEEEeccCCCc
Q psy5260 54 -------SRHDTASI---------LERCYSLLPRLEEAPVLYEWCGLRP--HRSL--VRVEIEQIGRLKVIHNYGHGGYG 113 (142)
Q Consensus 54 -------~~~~~~~l---------~~~~~~~~P~l~~~~v~~~w~G~Rp--~t~D--p~ig~~~~~~~~l~~~~G~gg~G 113 (142)
+.+.++++ ++.+.+++|.+++..+++.|+|+|| .++| |+-+.-....++.+++.|..+.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~~~~~~~~~~~spg 378 (393)
T PRK11728 299 WKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVETPRSLHVCNAPSPA 378 (393)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecCCCEEEEcCCCCch
Confidence 44555666 5999999999999999999999999 8887 44333222348999999999999
Q ss_pred cchhHHHHHHHHHHH
Q psy5260 114 VTTAPGTSRYAVQLV 128 (142)
Q Consensus 114 ~t~ap~~a~~la~~i 128 (142)
+|.||++|+.+++++
T Consensus 379 ~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 379 ATSSLPIGEHIVSKV 393 (393)
T ss_pred HHccHHHHHHHHhhC
Confidence 999999999999863
No 15
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.48 E-value=8.3e-13 Score=109.15 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=97.2
Q ss_pred eeeccceEEEEeCCCcceEE----EeCCeEEEEEccCCeEEEccceecC--CCCCCCCHHHHHHHHHHHHhhCCCCCCCc
Q psy5260 3 CLLVCSTPLQVWAPWLSHFY----YLDYDVYIIPHSNGAVTLGGCRHYD--SYSRDISRHDTASILERCYSLLPRLEEAP 76 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~~~~~i----~~~~~~y~~p~~~g~~~iG~t~~~~--~~~~~~~~~~~~~l~~~~~~~~P~l~~~~ 76 (142)
+.|.|||.+.++.+..+..+ ....+.|++|. +|.+++|.|.+.. .++..++++.++.+++.+.+++|.+...+
T Consensus 203 i~p~kG~~lv~~~~~~~~~~~~~~~~~~g~~~~P~-~~~~liGtT~~~~~~~~~~~~~~~~v~~ll~~~~~~~P~l~~~~ 281 (516)
T TIGR03377 203 MFPAKGALLIMNHRINNTVINRCRKPSDADILVPG-DTISIIGTTSERIDDPDDLPVTQEEVDVLLREGAKLAPMLAQTR 281 (516)
T ss_pred eecceEEEEEECCcccccccccccCCCCCcEEEEC-CCeEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhCcccccCC
Confidence 67999999999764322222 22233588996 5688999888752 24567889999999999999999999999
Q ss_pred eeeeeEeeecCCCC-------------ceeeE-eeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 77 VLYEWCGLRPHRSL-------------VRVEI-EQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 77 v~~~w~G~Rp~t~D-------------p~ig~-~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
+++.|+|+||...+ .+++. ...+.+|++.++| |+ +|.++++|+.+++++...++
T Consensus 282 i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~G--Gk-ltt~r~~Ae~~~d~~~~~l~ 349 (516)
T TIGR03377 282 ILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITG--GK-LTTYRLMAEWATDVVCKKLG 349 (516)
T ss_pred EEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEec--ch-HHHHHHHHHHHHHHHHHHcC
Confidence 99999999997643 23332 1124578999999 34 99999999999999998875
No 16
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.48 E-value=1.7e-12 Score=108.05 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=95.9
Q ss_pred eeeccceEEEEeCCCcceEEE----eCCeEEEEEccCCeEEEccceecCC----CCCCCCHHHHHHHHHHHHhhCCCCCC
Q psy5260 3 CLLVCSTPLQVWAPWLSHFYY----LDYDVYIIPHSNGAVTLGGCRHYDS----YSRDISRHDTASILERCYSLLPRLEE 74 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~~~~~i~----~~~~~y~~p~~~g~~~iG~t~~~~~----~~~~~~~~~~~~l~~~~~~~~P~l~~ 74 (142)
+.|+|||+++++.+....++. .....|++|. ++.++||.|.+... .+..++++.++.|++.+.+++|.+.+
T Consensus 224 i~p~kG~~lv~~~~~~~~vi~~~~~~~~~~~~vp~-~~~~liGtT~~~~~~~~~~~~~~t~~~i~~Ll~~~~~l~P~l~~ 302 (546)
T PRK11101 224 MFPAKGSLLIMDHRINNHVINRCRKPADADILVPG-DTISLIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKLAPVMAK 302 (546)
T ss_pred eeecceEEEEECCccCceeEeccCCCCCCCEEEec-CCEEEEeeCCCCccCCCcCCCCCCHHHHHHHHHHHHHhCCCCCc
Confidence 579999999998643333332 1122367774 55789999876422 24678899999999999999999999
Q ss_pred CceeeeeEeeecCCC--C-c----------eeeEee-eCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 75 APVLYEWCGLRPHRS--L-V----------RVEIEQ-IGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 75 ~~v~~~w~G~Rp~t~--D-p----------~ig~~~-~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
.++++.|+|+||... + + +++... .+.+|++.++| |+ +|.++++|+.+++++...++
T Consensus 303 ~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~G--Gk-ltt~r~~Ae~v~d~v~~~l~ 372 (546)
T PRK11101 303 TRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITG--GK-LMTYRLMAEWATDAVCRKLG 372 (546)
T ss_pred cCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEEC--Ch-HHHHHHHHHHHHHHHHHhcC
Confidence 999999999999843 2 3 444211 13479999999 34 99999999999999998875
No 17
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.41 E-value=5.2e-12 Score=104.16 Aligned_cols=129 Identities=15% Similarity=0.223 Sum_probs=99.0
Q ss_pred eeeccceEEEEeCCCcc--eEEE--eCC-eEEEEEccCCeEEEccceec-C--CCCCCCCHHHHHHHHHHHHhhCC-CCC
Q psy5260 3 CLLVCSTPLQVWAPWLS--HFYY--LDY-DVYIIPHSNGAVTLGGCRHY-D--SYSRDISRHDTASILERCYSLLP-RLE 73 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~~~--~~i~--~~~-~~y~~p~~~g~~~iG~t~~~-~--~~~~~~~~~~~~~l~~~~~~~~P-~l~ 73 (142)
+.|.|||.++++.+... ..++ .++ .+|+.|..++.+++|+|.+. + .++..++++.+++|++.+.++|| .+.
T Consensus 231 v~p~kG~~lv~~~~~~~~~~~~~~~~dgr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~ 310 (502)
T PRK13369 231 VRLVKGSHIVVPKFWDGAQAYLFQNPDKRVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANRYFKEKLR 310 (502)
T ss_pred eEEeeEEEEEeCCccCCCceEEEeCCCCeEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCC
Confidence 67999999999754321 1222 233 36899998778889998754 2 24678899999999999999997 898
Q ss_pred CCceeeeeEeeecCCCC----c-------eeeEee-eCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 74 EAPVLYEWCGLRPHRSL----V-------RVEIEQ-IGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 74 ~~~v~~~w~G~Rp~t~D----p-------~ig~~~-~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
+..+++.|+|+||.++| + .|.... .+.+|++..+| .++|.++.+|+.+++.+...++.
T Consensus 311 ~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~G---gk~Tt~r~~Ae~v~d~~~~~l~~ 380 (502)
T PRK13369 311 REDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFG---GKITTFRKLAEHALERLKPFFPQ 380 (502)
T ss_pred HhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeC---ChHhhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999864 1 122110 12367999998 57999999999999999988764
No 18
>KOG2853|consensus
Probab=99.38 E-value=3.3e-12 Score=99.96 Aligned_cols=128 Identities=18% Similarity=0.176 Sum_probs=96.5
Q ss_pred eeeccceEEEEeCC---Ccce-EEEeCCeEEEEEccCCeEEEccce--ecC---CCCCCCCHH-HHHHHHHHHHhhCCCC
Q psy5260 3 CLLVCSTPLQVWAP---WLSH-FYYLDYDVYIIPHSNGAVTLGGCR--HYD---SYSRDISRH-DTASILERCYSLLPRL 72 (142)
Q Consensus 3 ~~p~rGqv~~~~~p---~~~~-~i~~~~~~y~~p~~~g~~~iG~t~--~~~---~~~~~~~~~-~~~~l~~~~~~~~P~l 72 (142)
+.|.|-.+.++..| .++. ++.++.++|++...-|.-.++|.. +.. -.+..+|.+ ..+.+.-.+...+|.+
T Consensus 342 iepRKRyvyvi~~~~~PGl~~Pl~iDpsG~f~Rrdglg~nfl~grsp~ed~~~d~~nldVD~d~F~qkiwP~L~nRVP~f 421 (509)
T KOG2853|consen 342 IEPRKRYVYVIFAPDVPGLDTPLTIDPSGVFFRRDGLGGNFLCGRSPSEDEEPDHSNLDVDHDYFYQKIWPHLANRVPAF 421 (509)
T ss_pred CCccceeEEEEeCCCCCCCCCceeECCCccEEEecCCCCceecccCCccccCCCccccccChHHHHhhhhHHHHhccccc
Confidence 45677777777654 3443 333444789999876655555433 221 123556665 4567888889999999
Q ss_pred CCCceeeeeEeeecCCC-C--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 73 EEAPVLYEWCGLRPHRS-L--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 73 ~~~~v~~~w~G~Rp~t~-D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
..+++..+|+|++...- | ++||.+ +-..|+|+++|++|||++.+|++|+.+|++|.+.
T Consensus 422 etakVqsaWaGyyD~NtfD~ngViG~H-P~y~Nly~atGFsghGvqqs~avgRAiaElIldG 482 (509)
T KOG2853|consen 422 ETAKVQSAWAGYYDHNTFDDNGVIGEH-PLYTNLYMATGFSGHGVQQSPAVGRAIAELILDG 482 (509)
T ss_pred ceeeeeehhcccccccccccCCcccCC-cceeeeeeeecccccchhcchHHHHHHHHHHhcC
Confidence 99999999999999865 5 999986 3467999999999999999999999999998654
No 19
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.35 E-value=2.2e-11 Score=102.92 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=93.8
Q ss_pred eeeccceEEEEeC---CCcceEEE----eCCeEEEEEccCCeEEEccceec--CCCCCCCCHHHHHHHHHHHHhhCC-CC
Q psy5260 3 CLLVCSTPLQVWA---PWLSHFYY----LDYDVYIIPHSNGAVTLGGCRHY--DSYSRDISRHDTASILERCYSLLP-RL 72 (142)
Q Consensus 3 ~~p~rGqv~~~~~---p~~~~~i~----~~~~~y~~p~~~g~~~iG~t~~~--~~~~~~~~~~~~~~l~~~~~~~~P-~l 72 (142)
+.|.||..+.++. |.....++ .++.+|+.|. +|.+++|+|.+. ...+..++++.+++|++.+.++|| .+
T Consensus 311 I~p~kG~hlvl~~~~~~~~~~~i~~~~~dgr~~~~~P~-~g~~liGtTd~~~~~~~~~~~t~~ei~~Ll~~a~~~~~~~l 389 (627)
T PLN02464 311 ICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSKTPITMLPEPHEDEIQFILDAISDYLNVKV 389 (627)
T ss_pred eEeeeeEEEecccccCCCCceEEecCCCCCCEEEEEec-CCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Confidence 7899998888764 32222333 2345899999 778999988875 335677888999999999999999 78
Q ss_pred CCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccC-----CCccchhHHHHHHHHHHHHhh
Q psy5260 73 EEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHG-----GYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 73 ~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~g-----g~G~t~ap~~a~~la~~i~g~ 131 (142)
....+++.|+|+||.++| |.++.. +..+.++...||| |.-+|....+|+.+++.+...
T Consensus 390 ~~~~v~~~waG~RPl~~d~~~~~~~~-~sr~~~i~~~~~gli~i~GGk~Tt~R~mAe~~~d~~~~~ 454 (627)
T PLN02464 390 RRSDVLSAWSGIRPLAVDPSAKSTES-ISRDHVVCEEPDGLVTITGGKWTTYRSMAEDAVDAAIKS 454 (627)
T ss_pred ChhhEEEEEEeEEeeccCCCCCcccc-cCCceEEEecCCCeEEEECChHHHHHHHHHHHHHHHHHh
Confidence 889999999999999987 433332 2234455554443 233889999999999998763
No 20
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.32 E-value=4.2e-11 Score=99.03 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=97.8
Q ss_pred eeeccceEEEEeCCCc--ceEEE---eCCeEEEEEccCCeEEEccceec---CCCCCCCCHHHHHHHHHHHHhhCC-CCC
Q psy5260 3 CLLVCSTPLQVWAPWL--SHFYY---LDYDVYIIPHSNGAVTLGGCRHY---DSYSRDISRHDTASILERCYSLLP-RLE 73 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~~--~~~i~---~~~~~y~~p~~~g~~~iG~t~~~---~~~~~~~~~~~~~~l~~~~~~~~P-~l~ 73 (142)
+.|.||+.++++.... ...++ .++.+|+.|..+|..++|.|.+. +.++..++++.+++|++.+.+++| .+.
T Consensus 232 i~p~kG~~lvl~~~~~~~~~~~~~~~dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll~~~~~~~p~~l~ 311 (508)
T PRK12266 232 IRLVKGSHIVVPRLFDHDQAYILQNPDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNRYFKKQLT 311 (508)
T ss_pred eeeeeeEEEEECCcCCCCcEEEEeCCCCCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 6799999999875322 12222 23456889998889999988653 224567889999999999999996 798
Q ss_pred CCceeeeeEeeecCCCC--c---------eeeEe-eeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 74 EAPVLYEWCGLRPHRSL--V---------RVEIE-QIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 74 ~~~v~~~w~G~Rp~t~D--p---------~ig~~-~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
...+++.|+|+||.++| + .|... ..+.+|++..+| -.+|.++.+|+.+++.+...++.
T Consensus 312 ~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~G---gk~Tt~r~mAe~~~~~~~~~l~~ 381 (508)
T PRK12266 312 PADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVFG---GKITTYRKLAEHALEKLAPYLPQ 381 (508)
T ss_pred HHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEEc---ChHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999976 3 12111 012367888888 35999999999999999988763
No 21
>KOG2852|consensus
Probab=99.26 E-value=1.7e-11 Score=94.06 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=81.6
Q ss_pred EccCCeEEEccce-ec-----CCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC---ceeeEeeeCcce
Q psy5260 32 PHSNGAVTLGGCR-HY-----DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL---VRVEIEQIGRLK 102 (142)
Q Consensus 32 p~~~g~~~iG~t~-~~-----~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D---p~ig~~~~~~~~ 102 (142)
++.|+.++|.|.. .. +..+..++++..++|.+-+..+.+.+.+..+....+++.|.+.+ |+||.- ..+
T Consensus 258 ~rkd~Evyicg~~~~e~~lPedsd~v~~npeki~~Lk~~a~~v~s~l~ks~v~~~qacfLP~sn~tg~PvIget---~sg 334 (380)
T KOG2852|consen 258 ARKDREVYICGETDKEHLLPEDSDDVFVNPEKIIELKEMADLVSSELTKSNVLDAQACFLPTSNITGIPVIGET---KSG 334 (380)
T ss_pred ecCCceEEEecCCCccccCCcccccceeCHHHHHHHHHHHHHhhhhhccchhhhhhhccccccCCCCCceEeec---CCc
Confidence 4556566665533 22 22456778899999999999999999999999999999999987 999974 349
Q ss_pred EEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 103 VIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 103 l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+|+++||+-+|++.+|++|+.+|++|++..
T Consensus 335 ~yVaagHscWGItnaPaTG~~mAEllldge 364 (380)
T KOG2852|consen 335 VYVAAGHSCWGITNAPATGKCMAELLLDGE 364 (380)
T ss_pred eEEeecccccceecCcchhHHHHHHHhccc
Confidence 999999999999999999999999998874
No 22
>KOG2844|consensus
Probab=98.82 E-value=2.4e-08 Score=83.92 Aligned_cols=126 Identities=14% Similarity=0.134 Sum_probs=98.2
Q ss_pred eeeccceEEEEeC-CCc----ceEEE-eCCeEEEEEccCCeEEEccceecC----C----C---CCCCCHHHHHHHHHHH
Q psy5260 3 CLLVCSTPLQVWA-PWL----SHFYY-LDYDVYIIPHSNGAVTLGGCRHYD----S----Y---SRDISRHDTASILERC 65 (142)
Q Consensus 3 ~~p~rGqv~~~~~-p~~----~~~i~-~~~~~y~~p~~~g~~~iG~t~~~~----~----~---~~~~~~~~~~~l~~~~ 65 (142)
++|+.=+.+++++ +.. ...++ .++.+|++...+| +..|+-.... . + -.++|-+..+..++.+
T Consensus 256 L~p~~H~YvvT~~IeGi~s~t~p~irD~DgSvylR~~~~g-il~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesa 334 (856)
T KOG2844|consen 256 LVPMHHAYVVTSRIEGVSSLTRPNIRDLDGSVYLRQQGDG-ILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAA 334 (856)
T ss_pred ceeeeeeEEEecccCCccCCCccceecccceEEEEecCCc-eeccccccCceeccccCCccccccccccHhhhHHHHHHH
Confidence 3566667777765 322 22444 4567899999885 6666643210 0 0 1235667789999999
Q ss_pred HhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHh
Q psy5260 66 YSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQ 130 (142)
Q Consensus 66 ~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g 130 (142)
.+++|.|+++.+.+.-+|.-.+||| |++|+. ++..|.|+++|+++-|++++-++|+.+|++|..
T Consensus 335 i~r~P~l~k~~i~~~v~gpe~ftPD~~p~mGe~-p~~~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~ 400 (856)
T KOG2844|consen 335 IERVPVLEKAGIKSLVNGPETFTPDHLPIMGES-PEVRGYWVACGFNSAGLSFGGGCGKYLAEWIIH 400 (856)
T ss_pred HHhCchhhhcCccceecCccccCCccccccCCC-ccccceEEeecCCccceeccCchhHHHHHHhhc
Confidence 9999999999999999999999999 999976 578999999999999999999999999999854
No 23
>KOG2820|consensus
Probab=98.79 E-value=3.4e-08 Score=77.39 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 55 RHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 55 ~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+..++...+-..++.|.+.+-..+....|++..||| .+|+.. ++..|+|+++|.+||||.++|.+|+.+|+++.+.+
T Consensus 301 ~~~idl~~~f~~~~~p~l~~~~p~~t~~C~YT~TpD~~FviD~~-P~~~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~~~ 379 (399)
T KOG2820|consen 301 PKAIDLMRRFLRTFGPDLDDRSPINTKMCMYTDTPDANFVIDKH-PQYDNVFVGGGGSGHGFKFAPNIGKYLAEMAMGDL 379 (399)
T ss_pred chHHHHHHHHHHHhCccccCCCcceeeEEEeeCCCCcCeeeecC-CCcccEEEecCCCCcceeecchHHHHHHHHhhhcc
Confidence 344455555667788999988899999999999998 778875 56789999999999999999999999999999998
Q ss_pred CC
Q psy5260 133 DP 134 (142)
Q Consensus 133 ~~ 134 (142)
.|
T Consensus 380 ~e 381 (399)
T KOG2820|consen 380 SE 381 (399)
T ss_pred cc
Confidence 76
No 24
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.44 E-value=9.6e-06 Score=67.46 Aligned_cols=128 Identities=17% Similarity=0.111 Sum_probs=96.1
Q ss_pred eeeccceEEEEeC--CCcceEEE----eCCeEEEEEccCCeEEEccceecC---CCCCCCCHHHHHHHHHHHH-hhCCCC
Q psy5260 3 CLLVCSTPLQVWA--PWLSHFYY----LDYDVYIIPHSNGAVTLGGCRHYD---SYSRDISRHDTASILERCY-SLLPRL 72 (142)
Q Consensus 3 ~~p~rGqv~~~~~--p~~~~~i~----~~~~~y~~p~~~g~~~iG~t~~~~---~~~~~~~~~~~~~l~~~~~-~~~P~l 72 (142)
++|.||--++++. |....+++ .++-.+++|..+ ..+||.|...- ..+..++++.+++|++.+. .+-|.+
T Consensus 242 vr~skGsHlVv~~~~~~~~a~~~~~~~d~r~~f~iP~~~-~~liGTTD~~~~~~~~~~~~~~eEidyll~~~~~~~~~~l 320 (532)
T COG0578 242 VRPSKGSHLVVDKKFPINQAVINRCRKDGRIVFAIPYEG-KTLIGTTDTDYDGDPEDPRITEEEIDYLLDAVNRYLAPPL 320 (532)
T ss_pred ceeccceEEEecccCCCCceEEeecCCCCceEEEecCCC-CEEeeccccccCCCcccCCCCHHHHHHHHHHHHhhhhccC
Confidence 6899999999988 54444443 334678889876 56999987532 3567889999999999999 666778
Q ss_pred CCCceeeeeEeeecCCCC----c-------eeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcCCC
Q psy5260 73 EEAPVLYEWCGLRPHRSL----V-------RVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDPT 135 (142)
Q Consensus 73 ~~~~v~~~w~G~Rp~t~D----p-------~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~~~ 135 (142)
....|.+.|+|+||...| | .|-.+ .+..|++..+| .-+|.--.+||.+++.+...++..
T Consensus 321 ~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~-~~~~glltv~G---GKlTTyR~maE~a~d~v~~~lg~~ 390 (532)
T COG0578 321 TREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDH-AELAGLLTVAG---GKLTTYRKMAEDALDAVCEKLGIR 390 (532)
T ss_pred ChhheeeeeeeeeeccCCCCCchhhccCceEEEec-CCCCCeEEEec---chhHHhHHHHHHHHHHHHHhcCCC
Confidence 889999999999999874 2 11111 01257777665 558888999999999999998854
No 25
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.90 E-value=3.9e-05 Score=62.48 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=99.8
Q ss_pred eeeccceEEEEeC---CCcceEEE-------eCCeEEEEEccCCeEEEccceecC----CCCCCCCHHHHHHHHHHHHhh
Q psy5260 3 CLLVCSTPLQVWA---PWLSHFYY-------LDYDVYIIPHSNGAVTLGGCRHYD----SYSRDISRHDTASILERCYSL 68 (142)
Q Consensus 3 ~~p~rGqv~~~~~---p~~~~~i~-------~~~~~y~~p~~~g~~~iG~t~~~~----~~~~~~~~~~~~~l~~~~~~~ 68 (142)
+.|++||.++++. ..+++.+| ...++++.++-||.+++|-+..+. ..+...+.+..+.+.......
T Consensus 226 ~~P~~G~y~~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~ 305 (429)
T COG0579 226 IFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRG 305 (429)
T ss_pred cCccceEEEEEcccccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhhccccccccchhhhHHHhhhhh
Confidence 6799999999997 34667776 135788999999999999887654 123566677888899999999
Q ss_pred CCCCC-CCceeeeeEeeecCCCC-------ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 69 LPRLE-EAPVLYEWCGLRPHRSL-------VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 69 ~P~l~-~~~v~~~w~G~Rp~t~D-------p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
+|++. .-.....++|.||+..+ -++-.. .+.++....+|.-.-|++-+|+.++.+.+++...
T Consensus 306 ~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~-~~~~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~~ 375 (429)
T COG0579 306 MPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEA-KDEDWFINVAGIRSQGLTADPAIAGGVLELLTER 375 (429)
T ss_pred cccccccccchhhhheeccccccccccccceecccc-cCCCCceeeeeEEccccccChhHhhhHhhhcccc
Confidence 99987 56788899999996432 222221 2457899999999999999999999999988664
No 26
>KOG0042|consensus
Probab=97.70 E-value=0.00041 Score=57.84 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=87.3
Q ss_pred ceeeccceEEEEeC---CC-cceEE---EeCCeEEEEEccCCeEEEccceecCC--CCCCCCHHHHHHHHHHHHhhCC--
Q psy5260 2 VCLLVCSTPLQVWA---PW-LSHFY---YLDYDVYIIPHSNGAVTLGGCRHYDS--YSRDISRHDTASILERCYSLLP-- 70 (142)
Q Consensus 2 ~~~p~rGqv~~~~~---p~-~~~~i---~~~~~~y~~p~~~g~~~iG~t~~~~~--~~~~~~~~~~~~l~~~~~~~~P-- 70 (142)
+|.|..|--+++.. |. +.-.. .+++-+|+.|... ..+.|.|..+.. .++.++++.++.|++..+.++-
T Consensus 301 i~~pSsGvHIVlP~yY~P~~mGlldP~TsDgRViFflPWqg-~TIaGTTD~pt~v~~~P~PtE~dIqfIL~ev~~yl~~~ 379 (680)
T KOG0042|consen 301 ICVPSSGVHIVLPGYYCPENMGLLDPKTSDGRVIFFLPWQG-KTIAGTTDIPTSVTHSPTPTEDDIQFILKEVQHYLSFD 379 (680)
T ss_pred eeccCCceeEEcccccCCcccccccCCCCCCcEEEEeccCC-ceeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 46677777666653 31 11111 1345678888864 788888887643 4688889999999999998874
Q ss_pred -CCCCCceeeeeEeeecCCCCc-eeeEe---------eeCcceEEEEeccCCCccchhHHHHHHHHHHHH--hhcCCCC
Q psy5260 71 -RLEEAPVLYEWCGLRPHRSLV-RVEIE---------QIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVK--QALDPTS 136 (142)
Q Consensus 71 -~l~~~~v~~~w~G~Rp~t~Dp-~ig~~---------~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~--g~~~~~~ 136 (142)
..+.-.|...|+|+||...|| ..-.. ..+..||+..+| .-||.=-.+||...+... +.|.+..
T Consensus 380 ~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaG---GKWTTyR~MAEeTVd~aI~~~~lk~~~ 455 (680)
T KOG0042|consen 380 VEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAG---GKWTTYRHMAEETVDAAIKAGDLKPAR 455 (680)
T ss_pred cccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEec---CcchhHHHHHHHHHHHHHHhCCCCCCC
Confidence 245567889999999999886 10000 113467777765 457888888888887653 3365533
No 27
>KOG2665|consensus
Probab=97.57 E-value=0.00019 Score=56.45 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=84.9
Q ss_pred eeeccceEEEEeCC---CcceEEE--eC-----CeEEEEEccCCeEEEcccee---------cC----------------
Q psy5260 3 CLLVCSTPLQVWAP---WLSHFYY--LD-----YDVYIIPHSNGAVTLGGCRH---------YD---------------- 47 (142)
Q Consensus 3 ~~p~rGqv~~~~~p---~~~~~i~--~~-----~~~y~~p~~~g~~~iG~t~~---------~~---------------- 47 (142)
+.|-||..+.+.+- .+++.++ .+ -++.+.|+.||.+++|-... +.
T Consensus 272 iVpfrG~ylll~~ek~h~vk~niyPvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~ 351 (453)
T KOG2665|consen 272 IVPFRGEYLLLKPEKLHLVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGD 351 (453)
T ss_pred eeeccchhhhcChHHhccccCceeeCCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCch
Confidence 67888888887653 2333333 11 14678888888888875321 00
Q ss_pred ------CCCCCCCHHHHHHH----HHHHHhhCCCCCCCceeeeeEeeecCCCC--------ceeeEe-eeCcceEEEEec
Q psy5260 48 ------SYSRDISRHDTASI----LERCYSLLPRLEEAPVLYEWCGLRPHRSL--------VRVEIE-QIGRLKVIHNYG 108 (142)
Q Consensus 48 ------~~~~~~~~~~~~~l----~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D--------p~ig~~-~~~~~~l~~~~G 108 (142)
.++..+++...+.. .+++++++|++++..+.+..+|+|+..-| .++... -...+++.+..+
T Consensus 352 ~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~llh~rn 431 (453)
T KOG2665|consen 352 TKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHVRN 431 (453)
T ss_pred HHHHHhhcCcccchHhhhhhhhhhhHHHHHhCccccccccccCcccccchhccCCCCCchheEEecCccccccceEEecC
Confidence 12233443333333 38889999999999999999999954332 222111 012478999999
Q ss_pred cCCCccchhHHHHHHHHHHHH
Q psy5260 109 HGGYGVTTAPGTSRYAVQLVK 129 (142)
Q Consensus 109 ~gg~G~t~ap~~a~~la~~i~ 129 (142)
.-+.|.|.|-++|+++|+.++
T Consensus 432 apSPgaTSSlAIa~mIa~k~~ 452 (453)
T KOG2665|consen 432 APSPGATSSLAIAKMIADKFL 452 (453)
T ss_pred CCCccchhhHHHHHHHHHHhc
Confidence 999999999999999999874
No 28
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=95.60 E-value=0.06 Score=44.98 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=75.7
Q ss_pred ceeeccceEEEEeCCCc-c---eEEEeC----CeEEEEEccCCeEEEcc-------ceecC------C--CC------C-
Q psy5260 2 VCLLVCSTPLQVWAPWL-S---HFYYLD----YDVYIIPHSNGAVTLGG-------CRHYD------S--YS------R- 51 (142)
Q Consensus 2 ~~~p~rGqv~~~~~p~~-~---~~i~~~----~~~y~~p~~~g~~~iG~-------t~~~~------~--~~------~- 51 (142)
-++|+|||++.++.+.+ . ..+|.. ...|.+|..|++++.|. +.-.. . .| .
T Consensus 263 ~i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~~~~~~r~~~~~d~~~~l~~~ 342 (497)
T PRK13339 263 GGFPISGQFLRCTNPEVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGFGPKFLKHGSNLDLFKSVKPY 342 (497)
T ss_pred ceEeeeEEEEEecCHHHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccchHHHhccCCHHHHHHHhCcc
Confidence 36899999999987532 2 246622 13578888776666664 11110 0 00 0
Q ss_pred CC---------C----HH-------HHHHHHHHHHhhCCCCCCCceeeeeEeeecCCC--Cc-------eeeEe-eeCcc
Q psy5260 52 DI---------S----RH-------DTASILERCYSLLPRLEEAPVLYEWCGLRPHRS--LV-------RVEIE-QIGRL 101 (142)
Q Consensus 52 ~~---------~----~~-------~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~--Dp-------~ig~~-~~~~~ 101 (142)
.. + .. .....++.+++++|.++.-.+....+|+|+.-- |. +.|.. ....+
T Consensus 343 ~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~ 422 (497)
T PRK13339 343 NITTMLAVAVKNMPLIKYSIDQVMQTKEGRMNHLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKGFIQFGTEVVNSQD 422 (497)
T ss_pred CcHHHHHHHHhccHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCCEEEecceeeecCC
Confidence 00 0 00 012345667899999976667778999999643 31 11211 11345
Q ss_pred e-EEEEeccCCCccchhHHHHHHHHHHH
Q psy5260 102 K-VIHNYGHGGYGVTTAPGTSRYAVQLV 128 (142)
Q Consensus 102 ~-l~~~~G~gg~G~t~ap~~a~~la~~i 128 (142)
+ +.+.++ -+.|.|.|..+|+.+++.+
T Consensus 423 ~s~~~lna-~SPgATssl~ia~~v~~~~ 449 (497)
T PRK13339 423 HSVIALLG-ESPGASTSVSVALEVLERN 449 (497)
T ss_pred CeEEEecC-CCcHHHhhHHHHHHHHHHH
Confidence 6 444555 4899999999999998754
No 29
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.30 E-value=0.13 Score=38.78 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=59.6
Q ss_pred CeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC-ceeeEeeeCcceEE
Q psy5260 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-VRVEIEQIGRLKVI 104 (142)
Q Consensus 26 ~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D-p~ig~~~~~~~~l~ 104 (142)
...|+.|..++++.+|-+..... +....++.++...+.+|.+.+.++.+.+.+..|.... + . ...++++
T Consensus 195 ~~~~~~P~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~-~~~~~v~ 264 (295)
T TIGR02032 195 GYGWVFPKGDGTANVGVGSRSAE-----EGEDLKKYLKDFLARRPELKDAETVEVIGAPIPIGRPDD----K-TVRGNVL 264 (295)
T ss_pred ceEEEEeCCCCeEEEeeeeccCC-----CCCCHHHHHHHHHHhCcccccCcEEeeeceeeccCCCCC----c-cccCCEE
Confidence 46789999888888875543221 1223344555555667888888888888888887542 1 0 0123443
Q ss_pred EEe-------ccCCCccchhHHHHHHHHHHH
Q psy5260 105 HNY-------GHGGYGVTTAPGTSRYAVQLV 128 (142)
Q Consensus 105 ~~~-------G~gg~G~t~ap~~a~~la~~i 128 (142)
+.- -+.|.|+.+|.-.|.++|+.|
T Consensus 265 liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 265 LVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred EEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 332 256899999999999888753
No 30
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=94.84 E-value=0.35 Score=40.21 Aligned_cols=66 Identities=12% Similarity=-0.004 Sum_probs=45.0
Q ss_pred HHHHHhhCCCCCCCceeeeeEeeecCCC--Ccee--eEee------eCcceEEE-EeccCCCccchhHHHHHHHHHHH
Q psy5260 62 LERCYSLLPRLEEAPVLYEWCGLRPHRS--LVRV--EIEQ------IGRLKVIH-NYGHGGYGVTTAPGTSRYAVQLV 128 (142)
Q Consensus 62 ~~~~~~~~P~l~~~~v~~~w~G~Rp~t~--Dp~i--g~~~------~~~~~l~~-~~G~gg~G~t~ap~~a~~la~~i 128 (142)
++.+++++|+++.-.+....+|+|+.-- |.-. |... ...++.++ .++ -+.|.|.|..+|+.+++..
T Consensus 366 ~~~~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~~~i~~~~~~~~~l~~-~SPgaTss~~i~~~v~~~~ 442 (483)
T TIGR01320 366 VSALREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGTTLIADADGSIAGLLG-ASPGASTAVSIMLDLLERC 442 (483)
T ss_pred HHHHHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCCeEEECCCCeEEEecC-CCchHHhhHHHHHHHHHHH
Confidence 4557789999976667778999999754 3111 2211 12355555 455 4899999999999998653
No 31
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=88.37 E-value=8.7 Score=30.39 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=56.5
Q ss_pred eEEEEEccCCeEEEccceecCCCCCCCCHHH-HHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC-ceeeEeeeCcceEE
Q psy5260 27 DVYIIPHSNGAVTLGGCRHYDSYSRDISRHD-TASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-VRVEIEQIGRLKVI 104 (142)
Q Consensus 27 ~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~-~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D-p~ig~~~~~~~~l~ 104 (142)
..|+.|..++++.++-+... . ....+.+. .+.+.+.+.+. .+...++.+.-.|+.|+..- +. ..++++
T Consensus 196 f~~~lP~~~~~~~v~~~~~~-~-~~~~~~~~~~~~l~~~~~~~--g~~~~~i~~~~~~~iP~~~~~~~------~~~rv~ 265 (388)
T TIGR01790 196 FLYAMPLGSTRVFIEETSLA-D-RPALPRDRLRQRILARLNAQ--GWQIKTIEEEEWGALPVGLPGPF------LPQRVA 265 (388)
T ss_pred eEEEeecCCCeEEEEecccc-C-CCCCCHHHHHHHHHHHHHHc--CCeeeEEEeeeeEEEecccCCCc------cCCCee
Confidence 57899998888888754321 1 12223333 33444444332 34334455555577787543 21 012333
Q ss_pred EEec-------cCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 105 HNYG-------HGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 105 ~~~G-------~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
..-- ..|.|+.++-..|+.+|+.+...+.+
T Consensus 266 liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~ 302 (388)
T TIGR01790 266 AFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQ 302 (388)
T ss_pred eeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhcc
Confidence 3221 45789999999999999998766543
No 32
>PRK06185 hypothetical protein; Provisional
Probab=82.79 E-value=14 Score=29.40 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=55.5
Q ss_pred eCCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCC-CceeeeeEe--eecCCC--------C--
Q psy5260 24 LDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEE-APVLYEWCG--LRPHRS--------L-- 90 (142)
Q Consensus 24 ~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~-~~v~~~w~G--~Rp~t~--------D-- 90 (142)
.++.+.+.|.. +.+.++-+...+. .........+.+.+.+.+.+|.+.. +..+..|.. ..|... |
T Consensus 209 ~~g~~~llP~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv 286 (407)
T PRK06185 209 PGQGLIMIDRG-DYWQCGYVIPKGG-YAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGL 286 (407)
T ss_pred CCcEEEEEcCC-CeEEEEEEecCCC-chhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCe
Confidence 34456777876 6777776654332 2223344557778888888886432 111223322 122111 1
Q ss_pred ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 91 VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 91 p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
.++|- -.....-++|.|+.+|.--|..+|+.+...+
T Consensus 287 ~LvGD------AAh~~~P~~GqG~nlgl~Da~~La~~l~~~~ 322 (407)
T PRK06185 287 LCIGD------AAHAMSPVGGVGINLAIQDAVAAANILAEPL 322 (407)
T ss_pred EEEec------cccccCcccccchhHHHHHHHHHHHHHHHHh
Confidence 12221 1222334678999999988888888776544
No 33
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=80.93 E-value=2.2 Score=35.68 Aligned_cols=128 Identities=14% Similarity=-0.013 Sum_probs=76.1
Q ss_pred eeeccceEEEEeCCCc--ceE--EEe----CCeEEEEEccCCeEEEcc-------ceec------CC----------CC-
Q psy5260 3 CLLVCSTPLQVWAPWL--SHF--YYL----DYDVYIIPHSNGAVTLGG-------CRHY------DS----------YS- 50 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~~--~~~--i~~----~~~~y~~p~~~g~~~iG~-------t~~~------~~----------~~- 50 (142)
+.|+|||.+.++.+.+ ++. +|. +...|.+|..|++++.|. +.-. .. ++
T Consensus 263 i~PvrGq~l~~~~~~~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~ 342 (494)
T PRK05257 263 GFPVSGQFLVCENPEVVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAGFSTKFLKNGSLLDLFSSVRPSN 342 (494)
T ss_pred eeeeeEEEEEcCCHHHHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCccccHHhccCCCHHHHHHhcCccc
Confidence 6899999999987532 343 662 123478888776666664 1110 00 00
Q ss_pred ----C---CCCH----H-------HHHHHHHHHHhhCCCCCCCceeeeeEeeecCCC--Cc------eeeE-eeeCcceE
Q psy5260 51 ----R---DISR----H-------DTASILERCYSLLPRLEEAPVLYEWCGLRPHRS--LV------RVEI-EQIGRLKV 103 (142)
Q Consensus 51 ----~---~~~~----~-------~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~--Dp------~ig~-~~~~~~~l 103 (142)
. ..+. - .....++.+++++|.++.-.+....+|+|+..- |+ ..|. .....++.
T Consensus 343 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~~ 422 (494)
T PRK05257 343 LLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFGTEVVSSADGS 422 (494)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECCcEEEecCCCe
Confidence 0 0000 0 012345667899999876666677899999653 32 1221 11234565
Q ss_pred EEEeccCCCccchhHHHHHHHHHHHHh
Q psy5260 104 IHNYGHGGYGVTTAPGTSRYAVQLVKQ 130 (142)
Q Consensus 104 ~~~~G~gg~G~t~ap~~a~~la~~i~g 130 (142)
+++.=--+.|.|.|..+++.+++.+-.
T Consensus 423 ~~~l~~~SPgat~s~~i~~~v~~~~~~ 449 (494)
T PRK05257 423 IAALLGASPGASTAVPIMLEVLEKCFP 449 (494)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHhCH
Confidence 544333589999999999999986533
No 34
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=80.72 E-value=27 Score=27.84 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=43.4
Q ss_pred CeEEEEEccCCeEEEccceecCCCCCCCCHHH-HHHHHHHHHhhCCCCCCCceeeeeEeeecCCC
Q psy5260 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHD-TASILERCYSLLPRLEEAPVLYEWCGLRPHRS 89 (142)
Q Consensus 26 ~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~-~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~ 89 (142)
..+|+.|..+++.+|..|.-.. ....+.+. .++|.+.+.+ -++...++++.=.|+-|++.
T Consensus 185 ~F~Y~lP~~~~~alvE~T~fs~--~~~~~~~~~~~~l~~~l~~--~g~~~~~i~~~E~G~IPm~~ 245 (374)
T PF05834_consen 185 SFLYVLPFSEDRALVEETSFSP--RPALPEEELKARLRRYLER--LGIDDYEILEEERGVIPMTT 245 (374)
T ss_pred eEEEEEEcCCCeEEEEEEEEcC--CCCCCHHHHHHHHHHHHHH--cCCCceeEEEeecceeeccc
Confidence 4689999999999998776532 22234444 4566666666 36778899999999999964
No 35
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=78.42 E-value=1.3 Score=36.08 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=25.2
Q ss_pred eccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 107 YGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 107 ~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
.|+.|.|+.+|..+|+++|+.+...+..
T Consensus 310 ~g~~g~Gi~~A~~SG~lAAeai~~a~~~ 337 (428)
T PRK10157 310 LGFTIRGMDLAIAAGEAAAKTVLSAMKS 337 (428)
T ss_pred cCceeeeHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999877654
No 36
>PLN02697 lycopene epsilon cyclase
Probab=74.56 E-value=35 Score=28.96 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=38.0
Q ss_pred CeEEEEEccCCeEEEccceecCCCCCCCCH-HHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC
Q psy5260 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISR-HDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL 90 (142)
Q Consensus 26 ~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~-~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D 90 (142)
..+|+.|..++++.|=+|.-.. ....+. ...++|.+++.+. ++...++++.=.|+.|+..+
T Consensus 305 ~FlYvlP~~~~~~~VE~T~l~~--~~~l~~~~l~~~L~~~l~~~--Gi~~~~i~~~E~g~iPm~g~ 366 (529)
T PLN02697 305 TFLYAMPMSSTRVFFEETCLAS--KDAMPFDLLKKRLMSRLETM--GIRILKTYEEEWSYIPVGGS 366 (529)
T ss_pred eEEEEeecCCCeEEEEEeeecc--CCCCCHHHHHHHHHHHHHhC--CCCcceEEEEEeeeecCCCC
Confidence 3579999999899884443211 122222 3335566665553 45567788888888899654
No 37
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=74.41 E-value=43 Score=26.77 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=48.2
Q ss_pred cceEEEEeCCC-cce-EEE--------eCCeEEEEEccCCeEEEccceecCCCCCCCCHHH-HHHHHHHHHhhCCCCCCC
Q psy5260 7 CSTPLQVWAPW-LSH-FYY--------LDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHD-TASILERCYSLLPRLEEA 75 (142)
Q Consensus 7 rGqv~~~~~p~-~~~-~i~--------~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~-~~~l~~~~~~~~P~l~~~ 75 (142)
.|+...+..|. ++. +++ ....+|+.|..+++++|..|.-.. ....+.+. .++|.+.+.+. .+...
T Consensus 150 ~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~--~~~l~~~~l~~~l~~~~~~~--g~~~~ 225 (370)
T TIGR01789 150 LGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD--DPLLDRNALSQRIDQYARAN--GWQNG 225 (370)
T ss_pred EEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC--CCCCCHHHHHHHHHHHHHHh--CCCce
Confidence 46667777662 121 221 123679899999999996554321 13334444 34555665544 45567
Q ss_pred ceeeeeEeeecCCCC
Q psy5260 76 PVLYEWCGLRPHRSL 90 (142)
Q Consensus 76 ~v~~~w~G~Rp~t~D 90 (142)
++++...|+.|++.+
T Consensus 226 ~i~~~e~g~iPm~~~ 240 (370)
T TIGR01789 226 TPVRHEQGVLPVLLG 240 (370)
T ss_pred EEEEeeeeEEeeecC
Confidence 788888899998653
No 38
>PRK07233 hypothetical protein; Provisional
Probab=71.93 E-value=24 Score=28.03 Aligned_cols=76 Identities=7% Similarity=-0.074 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCceeeee----EeeecCC-CC-----ceeeEeeeCcceEEEEec----cCCCccchhHH
Q psy5260 54 SRHDTASILERCYSLLPRLEEAPVLYEW----CGLRPHR-SL-----VRVEIEQIGRLKVIHNYG----HGGYGVTTAPG 119 (142)
Q Consensus 54 ~~~~~~~l~~~~~~~~P~l~~~~v~~~w----~G~Rp~t-~D-----p~ig~~~~~~~~l~~~~G----~gg~G~t~ap~ 119 (142)
+++..+.+++.+.+++|.+...+++..+ --..|.. ++ |.+.. ..+|+|.+.- +.+.+|--|-.
T Consensus 342 ~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~---~~~~l~~aG~~~~~~~~~~~~~Ai~ 418 (434)
T PRK07233 342 DEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDT---PIEGLYLAGMSQIYPEDRSINGSVR 418 (434)
T ss_pred HHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCccc---CcCCEEEeCCcccCCccCchhHHHH
Confidence 3466788999999999977543333322 1112322 22 11211 2478888853 23458999999
Q ss_pred HHHHHHHHHHhhc
Q psy5260 120 TSRYAVQLVKQAL 132 (142)
Q Consensus 120 ~a~~la~~i~g~~ 132 (142)
.|..+|+.|...+
T Consensus 419 sG~~aA~~i~~~~ 431 (434)
T PRK07233 419 AGRRVAREILEDR 431 (434)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999998765
No 39
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=68.98 E-value=9.2 Score=32.08 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=50.5
Q ss_pred HHHHHhhCCCCCCCceee--eeEeeecCCCC-----ceeeEeee-CcceEEEEeccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 62 LERCYSLLPRLEEAPVLY--EWCGLRPHRSL-----VRVEIEQI-GRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 62 ~~~~~~~~P~l~~~~v~~--~w~G~Rp~t~D-----p~ig~~~~-~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
++.+++++|.++.-.+.. .++|+||.--| ..+|.... ..+|.+.+.|- +.|-|.|..-|+.=+..|+..|+
T Consensus 398 ~~~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~~~~~L~~g~~~i~~~~~~i~~~~~-spgast~l~~~~~d~~~~~~~~~ 476 (497)
T PTZ00383 398 LKDARKIVPSLTRKDLRYCVGYGGVRPQLIDKVSKKLLLGEGKIDPGKGIIFNITP-SPGATTCLGNAESDMREICERLG 476 (497)
T ss_pred HHHHHHhCCCCCHHHeeeccCCCceEEEEEECCCCeEecCceEEecCCCcEEeccC-CCcHHHHHHHHHHHHHHHHHHhC
Confidence 455678999986444443 56699997653 34454322 34677777664 88999999999888888888886
Q ss_pred C
Q psy5260 134 P 134 (142)
Q Consensus 134 ~ 134 (142)
.
T Consensus 477 ~ 477 (497)
T PTZ00383 477 A 477 (497)
T ss_pred C
Confidence 4
No 40
>PLN02463 lycopene beta cyclase
Probab=65.40 E-value=78 Score=26.18 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=56.6
Q ss_pred CeEEEEEccCCeEEEccceecCCCCCCCCHHH-HHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC-ceeeEeeeCcceE
Q psy5260 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHD-TASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-VRVEIEQIGRLKV 103 (142)
Q Consensus 26 ~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~-~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D-p~ig~~~~~~~~l 103 (142)
...|+.|..++++.++-|.-.. ....+.+. .+++.+++. .+ +++..++.+.-.|+.|+... |.. .+++
T Consensus 227 ~FlY~~P~~~~~~~vEeT~l~s--~~~~~~~~lk~~L~~~l~-~~-Gi~~~~i~~~E~~~IPmg~~~~~~------~~~~ 296 (447)
T PLN02463 227 TFLYAMPFSSNRIFLEETSLVA--RPGLPMDDIQERMVARLR-HL-GIKVKSVEEDEKCVIPMGGPLPVI------PQRV 296 (447)
T ss_pred ceEEEEecCCCeEEEEeeeeec--CCCCCHHHHHHHHHHHHH-HC-CCCcceeeeeeeeEeeCCCCCCCC------CCCE
Confidence 3679999999888887764321 12223333 344555544 22 34456677777778888543 311 1122
Q ss_pred EEEec-------cCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 104 IHNYG-------HGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 104 ~~~~G-------~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
+...+ ..|.|+..+-..|+.+|+.|...+++
T Consensus 297 ~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 297 LGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred EEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 12567777777888888887777654
No 41
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=63.12 E-value=70 Score=25.63 Aligned_cols=105 Identities=20% Similarity=0.131 Sum_probs=58.6
Q ss_pred CCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCC---CCCCCceeeeeEeeecCCC-C--ceeeE--e
Q psy5260 25 DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP---RLEEAPVLYEWCGLRPHRS-L--VRVEI--E 96 (142)
Q Consensus 25 ~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P---~l~~~~v~~~w~G~Rp~t~-D--p~ig~--~ 96 (142)
.++.++.|..++.+.+|-...... ....+.. +.+++...-.+ .+...++...-+|.-|... . |.++. .
T Consensus 197 ~Gy~wifP~~~~~~~VG~g~~~~~--~~~~~~~--~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~ 272 (396)
T COG0644 197 GGYGWIFPLGDGHANVGIGVLLDD--PSLSPFL--ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVL 272 (396)
T ss_pred CceEEEEECCCceEEEEEEEecCC--cCCCchH--HHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCccccCCEE
Confidence 467799999998888886544332 2222211 22222222111 1112466666677777663 3 21110 0
Q ss_pred eeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 97 QIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 97 ~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
..+ +-.-....+.|.|+-.|..+|+++|+.|...+.+
T Consensus 273 lvG-DAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~ 309 (396)
T COG0644 273 LVG-DAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEG 309 (396)
T ss_pred EEe-ccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHc
Confidence 001 0111444566899999999999999999887643
No 42
>PLN02487 zeta-carotene desaturase
Probab=62.01 E-value=27 Score=29.92 Aligned_cols=86 Identities=10% Similarity=-0.052 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCceee-----eeEeeecCCCC--ce-eeEeeeCcceEEEEe-----ccCCCccchh
Q psy5260 51 RDISRHDTASILERCYSLLPRLEEAPVLY-----EWCGLRPHRSL--VR-VEIEQIGRLKVIHNY-----GHGGYGVTTA 117 (142)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~~P~l~~~~v~~-----~w~G~Rp~t~D--p~-ig~~~~~~~~l~~~~-----G~gg~G~t~a 117 (142)
...+++.++...+.+.++||.+.+.++.. ..-.+...+|+ .+ -... ...+|+|+|. +|. ..+--|
T Consensus 461 ~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~-T~~~nl~LAGD~t~~~yP-at~EgA 538 (569)
T PLN02487 461 PLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQK-TPISNFFLAGSYTKQDYI-DSMEGA 538 (569)
T ss_pred CCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCC-CCCCCEEEeCcccccCCc-chHHHH
Confidence 44566788999999999999876665442 22333333442 10 0000 1136888886 332 244457
Q ss_pred HHHHHHHHHHHHhhcCCCCcc
Q psy5260 118 PGTSRYAVQLVKQALDPTSSL 138 (142)
Q Consensus 118 p~~a~~la~~i~g~~~~~~~~ 138 (142)
-..|...|+.+....+.-..|
T Consensus 539 v~SG~~AA~~i~~~~~~~~~~ 559 (569)
T PLN02487 539 TLSGRQAAAYICEAGEELAGL 559 (569)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 788889998887775443333
No 43
>PLN02612 phytoene desaturase
Probab=61.77 E-value=31 Score=29.32 Aligned_cols=81 Identities=10% Similarity=-0.059 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCC-----CCceeeeeEee--------ecCCCC--ceeeEeeeCcceEEEEeccCC----
Q psy5260 51 RDISRHDTASILERCYSLLPRLE-----EAPVLYEWCGL--------RPHRSL--VRVEIEQIGRLKVIHNYGHGG---- 111 (142)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~~P~l~-----~~~v~~~w~G~--------Rp~t~D--p~ig~~~~~~~~l~~~~G~gg---- 111 (142)
...+++..+.+++.+.++||... ..++...+.-- .|.... |....+ .+|+|+|.-+-.
T Consensus 451 ~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tP---i~~l~lAGd~t~~~~~ 527 (567)
T PLN02612 451 SRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSP---IEGFYLAGDYTKQKYL 527 (567)
T ss_pred cCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCc---cCCEEEeecceeCCch
Confidence 34556788999999999999752 13333311111 121111 211111 357887752221
Q ss_pred CccchhHHHHHHHHHHHHhhcCC
Q psy5260 112 YGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 112 ~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
.++--|...|+..|+.|..+++.
T Consensus 528 ~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 528 ASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Confidence 25777888999999999888765
No 44
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=60.37 E-value=40 Score=27.84 Aligned_cols=33 Identities=12% Similarity=-0.015 Sum_probs=26.3
Q ss_pred cceEEEEecc--CCCccchhHHHHHHHHHHHHhhc
Q psy5260 100 RLKVIHNYGH--GGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 100 ~~~l~~~~G~--gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
.+|||++.+. -|.|+..+...|+.+|+.|.+.+
T Consensus 458 i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 458 IPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 4799987533 36799999999999999998754
No 45
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=59.14 E-value=19 Score=24.13 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=36.2
Q ss_pred EeeecCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 82 CGLRPHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 82 ~G~Rp~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
.+--|..-| -.+.... .++.+.-.+|.+.|-..+-++|.++++++.|+
T Consensus 26 ~~~np~CGD~i~l~l~i--~~~~I~d~~f~~~GC~is~Asas~~~e~i~Gk 74 (121)
T TIGR03419 26 EVGNPKCGDIMKIFLKV--EDDIIKDVKFKTFGCGAAIASSSMATEMIKGK 74 (121)
T ss_pred EeCCCCCccEEEEEEEE--cCCEEEEEEEEEeccHHHHHHHHHHHHHHcCC
Confidence 344455556 3344322 35789999999999999999999999999887
No 46
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=58.75 E-value=41 Score=27.72 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=24.9
Q ss_pred cceEEEEec--cCCCccchhHHHHHHHHHHHHh
Q psy5260 100 RLKVIHNYG--HGGYGVTTAPGTSRYAVQLVKQ 130 (142)
Q Consensus 100 ~~~l~~~~G--~gg~G~t~ap~~a~~la~~i~g 130 (142)
.+|||++.+ |-|.|+..+...|+.+|+.|+.
T Consensus 458 i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 458 VKGLWLCGDSIHPGEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCeEEecCccCCCCcHHHHHHHHHHHHHHHhh
Confidence 479998754 3467899999999999999864
No 47
>PRK10015 oxidoreductase; Provisional
Probab=56.34 E-value=79 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=28.4
Q ss_pred ceEEEEeccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 101 LKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 101 ~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
-+++...++.+.|+.+|..+|++.|+.+...+..
T Consensus 304 Ag~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~ 337 (429)
T PRK10015 304 AGFCLNLGFTVRGMDLAIASAQAAATTVIAAKER 337 (429)
T ss_pred cccccccCccccchhHHHHHHHHHHHHHHHHHhc
Confidence 4666667888999999999999999998777653
No 48
>PRK11325 scaffold protein; Provisional
Probab=54.51 E-value=27 Score=23.62 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=35.4
Q ss_pred ecCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 85 RPHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 85 Rp~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
-|..-| -.+... .+..+.+.-.+|.+.|-+.+-++|.++++++.|+
T Consensus 34 np~CGD~i~l~l~-v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gk 80 (127)
T PRK11325 34 APACGDVMKLQIK-VNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGK 80 (127)
T ss_pred CCCCccEEEEEEE-ECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCC
Confidence 445556 334433 2225799999999999999999999999999987
No 49
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=54.38 E-value=29 Score=23.35 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=34.8
Q ss_pred ecCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 85 RPHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 85 Rp~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
-|..-| -.+... .+..+.+.-+.|.+.|-+.+-++|.++++++.|+
T Consensus 32 np~CGD~i~l~l~-v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gk 78 (124)
T TIGR01999 32 APACGDVMKLQIK-VNDDGIIEDAKFKTFGCGSAIASSSLATELIKGK 78 (124)
T ss_pred CCCCccEEEEEEE-ECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCC
Confidence 344556 333332 2234789999999999999999999999999987
No 50
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.
Probab=53.12 E-value=29 Score=23.77 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=36.0
Q ss_pred EeeecCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 82 CGLRPHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 82 ~G~Rp~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
.+.-|..-| -.+... . ..+.+...+|.+.|-+.+-++|.++++++.|+
T Consensus 30 ~~~np~CGD~i~l~l~-v-~~~~I~d~~f~~~GCais~Asas~~~e~i~Gk 78 (137)
T TIGR01994 30 RGHNPTCGDEITLTVK-L-EGDRIEDIAFEGEGCSISQASASMMTELIKGK 78 (137)
T ss_pred EeCCCCCCcEEEEEEE-E-cCCeEEEEEEEecccHHHHHHHHHHHHHHcCC
Confidence 344555666 333332 2 25789999999999999999999999999885
No 51
>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.
Probab=51.60 E-value=34 Score=22.67 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=29.2
Q ss_pred ceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 101 LKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 101 ~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
++.+.-.+|.+.|-..+-++|.++++++.|+
T Consensus 45 ~~~I~d~~f~~~GC~i~~Asas~~~~~~~Gk 75 (123)
T cd06664 45 DGRITDAKFQGFGCAISIASASLLTELIKGK 75 (123)
T ss_pred CCEEEEEEEEecCcHHHHHHHHHHHHHHcCC
Confidence 4899999999999999999999999999887
No 52
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=50.87 E-value=6.7 Score=32.79 Aligned_cols=16 Identities=13% Similarity=-0.056 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHhhc
Q psy5260 117 APGTSRYAVQLVKQAL 132 (142)
Q Consensus 117 ap~~a~~la~~i~g~~ 132 (142)
+.-++--+++.|..+.
T Consensus 432 gat~s~~i~~~v~~~~ 447 (494)
T PRK05257 432 GASTAVPIMLEVLEKC 447 (494)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 3345666667777664
No 53
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=49.46 E-value=61 Score=26.82 Aligned_cols=76 Identities=8% Similarity=-0.024 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCceeee-----eEeeecCCCC--cee-eEeeeCcceEEEEeccCCCc----cchhHH
Q psy5260 52 DISRHDTASILERCYSLLPRLEEAPVLYE-----WCGLRPHRSL--VRV-EIEQIGRLKVIHNYGHGGYG----VTTAPG 119 (142)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~P~l~~~~v~~~-----w~G~Rp~t~D--p~i-g~~~~~~~~l~~~~G~gg~G----~t~ap~ 119 (142)
..+++..+...+.+.++||.+.+.++... .-.+...+|+ ... ... ...+|+|+|.-+-..| +--|-.
T Consensus 386 ~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~-t~~~~l~lAGD~t~~~~pas~egAv~ 464 (474)
T TIGR02732 386 ESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQK-TPISNFFLAGSYTQQDYIDSMEGATL 464 (474)
T ss_pred CCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCC-CCCCCeEEeccccccCchHHHhHHHH
Confidence 34457788899999999998766554432 2333333443 110 000 1247999997444443 334566
Q ss_pred HHHHHHHHH
Q psy5260 120 TSRYAVQLV 128 (142)
Q Consensus 120 ~a~~la~~i 128 (142)
.|+..|+.|
T Consensus 465 sG~~aA~~i 473 (474)
T TIGR02732 465 SGRQAAAAI 473 (474)
T ss_pred HHHHHHHHh
Confidence 677777655
No 54
>PLN02576 protoporphyrinogen oxidase
Probab=49.09 E-value=48 Score=27.24 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCC----CCceeeeeEeeecCC-CC--ce---eeEeeeCc--ceEEEEeccC-CCccchhHH
Q psy5260 53 ISRHDTASILERCYSLLPRLE----EAPVLYEWCGLRPHR-SL--VR---VEIEQIGR--LKVIHNYGHG-GYGVTTAPG 119 (142)
Q Consensus 53 ~~~~~~~~l~~~~~~~~P~l~----~~~v~~~w~G~Rp~t-~D--p~---ig~~~~~~--~~l~~~~G~g-g~G~t~ap~ 119 (142)
.+++..+.+.+.+.++++.-. ..-....|..-.|.- ++ .. +....... +|+|++.-+. |.|+.-+..
T Consensus 395 s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai~ 474 (496)
T PLN02576 395 SEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVE 474 (496)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHHH
Confidence 345677888888888887321 122355676555433 23 11 11100012 6888877554 667788899
Q ss_pred HHHHHHHHHHhhcCCCCcc
Q psy5260 120 TSRYAVQLVKQALDPTSSL 138 (142)
Q Consensus 120 ~a~~la~~i~g~~~~~~~~ 138 (142)
.|..+|+.|...+...+.+
T Consensus 475 sg~~aA~~i~~~~~~~~~~ 493 (496)
T PLN02576 475 SGYEAADLVISYLESSAYK 493 (496)
T ss_pred HHHHHHHHHHHHHhhcccc
Confidence 9999999998887654444
No 55
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=46.37 E-value=1.5e+02 Score=23.54 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=51.0
Q ss_pred CeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCCceeeEeeeCcceEEE
Q psy5260 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIH 105 (142)
Q Consensus 26 ~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~Dp~ig~~~~~~~~l~~ 105 (142)
++.|+.|..+ ...+|-.... . ..+. +.+.+.+.+.++ +...+..+.+++.-|+.+-+ .. ...++++
T Consensus 203 ~y~wv~P~~~-~~~vg~~~~~---~-~~~~---~~~~~~l~~~~~-~~~~~~~~~~~~~ip~~~~~---~~--~~~~v~l 268 (388)
T TIGR02023 203 FYGWVFPKGD-HIAVGTGTGT---H-GFDA---KQLQANLRRRAG-LDGGQTIRREAAPIPMKPRP---RW--DFGRAML 268 (388)
T ss_pred ceEEEeeCCC-eeEEeEEECC---C-CCCH---HHHHHHHHHhhC-CCCceEeeeeeEeccccccc---cc--cCCCEEE
Confidence 4667888765 5666542211 1 1122 233334444433 43455566666666653211 00 0123222
Q ss_pred E-------eccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 106 N-------YGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 106 ~-------~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
+ .-..|-|+.+|...|+++|+.+...+..
T Consensus 269 vGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~ 304 (388)
T TIGR02023 269 VGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN 304 (388)
T ss_pred EeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 2 1246899999999999999998877643
No 56
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=45.54 E-value=1.6e+02 Score=23.65 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=51.7
Q ss_pred CeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCC-CCCCCceeeeeEeeecCCCCceeeEeeeCcceEE
Q psy5260 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP-RLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVI 104 (142)
Q Consensus 26 ~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P-~l~~~~v~~~w~G~Rp~t~Dp~ig~~~~~~~~l~ 104 (142)
++.|+.|..+ ++.||-.... .... .+++.+.....++ .+.+.++++..++.-|..+-+ .. -.+|++
T Consensus 207 gY~WifP~~~-~~~VG~g~~~----~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~~~~---~~--~~~~~l 273 (398)
T TIGR02028 207 FYGWVFPKCD-HVAVGTGTVA----AKPE---IKRLQSGIRARAAGKVAGGRIIRVEAHPIPEHPRP---RR--VVGRVA 273 (398)
T ss_pred ceEEEEECCC-eEEEEEEeCC----CCcc---HHHHHHhhhhhhhhccCCCcEEEEEEEeccccccc---cE--ECCCEE
Confidence 4678889875 5667653211 1111 2233333332222 122455666666666653210 01 023443
Q ss_pred EE-------eccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 105 HN-------YGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 105 ~~-------~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
++ .-..|-|+-+|..+|+++|+.+...+..
T Consensus 274 lvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~ 310 (398)
T TIGR02028 274 LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRL 310 (398)
T ss_pred EEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence 32 2256899999999999999998876543
No 57
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=42.45 E-value=96 Score=24.37 Aligned_cols=74 Identities=11% Similarity=-0.060 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCce----eeeeEeeec-CCCC-----ceeeEeeeCcceEEEEeccCCCccc----hhH
Q psy5260 53 ISRHDTASILERCYSLLPRLEEAPV----LYEWCGLRP-HRSL-----VRVEIEQIGRLKVIHNYGHGGYGVT----TAP 118 (142)
Q Consensus 53 ~~~~~~~~l~~~~~~~~P~l~~~~v----~~~w~G~Rp-~t~D-----p~ig~~~~~~~~l~~~~G~gg~G~t----~ap 118 (142)
.+++..+.+++.+.+++|.....++ +..|...++ .+++ |.+-. ..+++|++..+-..|+. -|.
T Consensus 331 ~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~l~~aGd~~~~~~~~~~egA~ 407 (419)
T TIGR03467 331 PREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGART---PWPNLFLAGDWTATGWPATMEGAV 407 (419)
T ss_pred CHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCC---CcCCEEEecccccCCCcchHHHHH
Confidence 3456788999999999986532222 122322222 2222 22211 24688888655555543 477
Q ss_pred HHHHHHHHHHH
Q psy5260 119 GTSRYAVQLVK 129 (142)
Q Consensus 119 ~~a~~la~~i~ 129 (142)
..|+.+|+.|.
T Consensus 408 ~SG~~aA~~i~ 418 (419)
T TIGR03467 408 RSGYQAAEAVL 418 (419)
T ss_pred HHHHHHHHHHh
Confidence 77888887664
No 58
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=39.82 E-value=41 Score=27.77 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=29.8
Q ss_pred cceEEEEecc--CCCccchhHHHHHHHHHHHHhhcCCCC
Q psy5260 100 RLKVIHNYGH--GGYGVTTAPGTSRYAVQLVKQALDPTS 136 (142)
Q Consensus 100 ~~~l~~~~G~--gg~G~t~ap~~a~~la~~i~g~~~~~~ 136 (142)
.+|||++... -|.|+..+...|+.+|+.|++..++++
T Consensus 458 i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 458 IDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 4799977432 367899999999999999999877654
No 59
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=38.38 E-value=35 Score=23.96 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=29.6
Q ss_pred ceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 101 LKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 101 ~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
.|++..+.|.+.|-..+-+.+.+++++|.|+
T Consensus 51 ~~~I~d~~F~~~GC~is~ASss~~te~v~Gk 81 (150)
T COG0822 51 NGVIEDAKFKGFGCAISIASSSMMTELVKGK 81 (150)
T ss_pred CCEEEEEEeeecCcHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999887
No 60
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=36.25 E-value=71 Score=24.94 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=34.7
Q ss_pred cCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 86 PHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 86 p~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
|..-| ..+........+.+.-++|.+.|-+.+-++|.++++++.|+
T Consensus 33 p~CGD~i~l~l~vd~~~~~I~d~~F~~~GCais~ASAs~~~eli~Gk 79 (290)
T TIGR02000 33 ISCGDALRLMLKVDPESDKIVDAGFQTFGCGSAIASSSALTEMIKGL 79 (290)
T ss_pred CCCcceEEEEEEEcCCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCC
Confidence 44446 33443321135799999999999999999999999999886
No 61
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=35.71 E-value=45 Score=24.14 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=17.3
Q ss_pred EEEEeccCCCccchhHHHHHHHHHH
Q psy5260 103 VIHNYGHGGYGVTTAPGTSRYAVQL 127 (142)
Q Consensus 103 l~~~~G~gg~G~t~ap~~a~~la~~ 127 (142)
=+++.|++|+| .+-|.+|+++++.
T Consensus 35 ~~iNLGfsG~~-~le~~~a~~ia~~ 58 (178)
T PF14606_consen 35 DVINLGFSGNG-KLEPEVADLIAEI 58 (178)
T ss_dssp EEEEEE-TCCC-S--HHHHHHHHHS
T ss_pred CeEeeeecCcc-ccCHHHHHHHhcC
Confidence 57899999999 5778888888864
No 62
>PHA02540 61 DNA primase; Provisional
Probab=31.15 E-value=1.1e+02 Score=24.51 Aligned_cols=59 Identities=14% Similarity=-0.113 Sum_probs=35.2
Q ss_pred HHHHHhhCCCCCCCceeeeeEeeecCCCC-------ceeeEeeeCcceEEEEeccCCCccchhHHH
Q psy5260 62 LERCYSLLPRLEEAPVLYEWCGLRPHRSL-------VRVEIEQIGRLKVIHNYGHGGYGVTTAPGT 120 (142)
Q Consensus 62 ~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D-------p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~ 120 (142)
.+++...+|.+..++-...|.|.-|+..| |..--.+.....+|+++|.|-+|=...+.+
T Consensus 7 ~~~~~~~~~~f~~~~~~~~~~~~CPf~~ds~~~~~kpsF~V~p~k~~~~yhCFgCGa~Gd~i~Flm 72 (337)
T PHA02540 7 ANRASPHLPKFKQVRRSSFYNFRCPICGDSQKDKNKARGWIYEKKDGGVFKCHNCGYHRPFGNFLK 72 (337)
T ss_pred HHHHHHHHhhhheeccCceEEecCCCCCCccccCcCCcEEEeccCCceEEEecCCCCCCCHHHHHH
Confidence 34555566666544433339999999776 221111111124999999998886555543
No 63
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=30.48 E-value=37 Score=22.78 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=36.7
Q ss_pred eeecCCCC-ceeeEeeeCcc-eEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 83 GLRPHRSL-VRVEIEQIGRL-KVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 83 G~Rp~t~D-p~ig~~~~~~~-~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
+.-|..-| -.+... .+.. +.+.-.+|.+.|-..+-++|.++++++.|+
T Consensus 29 ~~n~~CGD~i~i~l~-i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk 78 (126)
T PF01592_consen 29 AGNPSCGDEIRIYLK-IDDDGGRIKDAKFQGFGCAISIASASMMCELIKGK 78 (126)
T ss_dssp EEETTTTEEEEEEEE-ESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTS
T ss_pred ecCCCCCCEEEEEEE-EecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCC
Confidence 45566667 333333 2333 799999999999999999999999999887
No 64
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=27.16 E-value=67 Score=23.42 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCC-----CCCCceeeeeEeeecCC
Q psy5260 51 RDISRHDTASILERCYSLLPR-----LEEAPVLYEWCGLRPHR 88 (142)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~~P~-----l~~~~v~~~w~G~Rp~t 88 (142)
.+.+.++..+|.+...+.++. .+..+=-++|+|-||--
T Consensus 13 neL~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPEl 55 (196)
T PF02474_consen 13 NELQLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPEL 55 (196)
T ss_pred cccchhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCcee
Confidence 344456667788888777764 23345578999999964
No 65
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=23.24 E-value=3.7e+02 Score=21.12 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=20.2
Q ss_pred cCCCccchhHHHHHHHHHHHHhhc
Q psy5260 109 HGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 109 ~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+.|.|+.+|.--|..+++.+...+
T Consensus 297 ~~GqG~n~al~Da~~La~~L~~~~ 320 (392)
T PRK08773 297 LAGQGVNLGLRDVAALQQLVRQAH 320 (392)
T ss_pred chhchhhhhHHHHHHHHHHHHHHH
Confidence 568999999999999999887544
No 66
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=22.71 E-value=4.4e+02 Score=21.72 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=51.5
Q ss_pred CeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCCceeeEeeeCcceEEE
Q psy5260 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIH 105 (142)
Q Consensus 26 ~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~Dp~ig~~~~~~~~l~~ 105 (142)
++.|+.|..+ .+.||-...... ... .+..+.+.+.+... +.+.++++..++.-|..+-+ +. ..+++++
T Consensus 246 ~Y~WifP~g~-~~~VG~g~~~~~--~~~-~~~~~~l~~~~~~~---l~~~~~~~~~~~~ip~~~~~---~~--~~~~vlL 313 (450)
T PLN00093 246 FYGWVFPKCD-HVAVGTGTVVNK--PAI-KKYQRATRNRAKDK---IAGGKIIRVEAHPIPEHPRP---RR--VRGRVAL 313 (450)
T ss_pred ceEEEEECCC-cEEEEEEEccCC--CCh-HHHHHHHHHHhhhh---cCCCeEEEEEEEEccccccc---ce--eCCCcEE
Confidence 4568889875 566765322111 111 12223333332222 33455666666666653211 00 0123322
Q ss_pred E-------eccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 106 N-------YGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 106 ~-------~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
. .-+.|-|+.+|...|+++|+.+...+..
T Consensus 314 vGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~ 349 (450)
T PLN00093 314 VGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEN 349 (450)
T ss_pred EeccccCCCccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 2 2356899999999999999998876643
No 67
>PLN03153 hypothetical protein; Provisional
Probab=22.57 E-value=68 Score=27.36 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.1
Q ss_pred EeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 106 NYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 106 ~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
..+|||.|+.+|-.+++.+++++.+..
T Consensus 259 ~fA~GGAG~~LSrPLae~L~~~~d~C~ 285 (537)
T PLN03153 259 NMAFGGGGIAISYPLAEALSRILDDCL 285 (537)
T ss_pred ccccCCceEEEcHHHHHHHHHHhhhhh
Confidence 578999999999999999998875553
No 68
>PF12173 BacteriocIIc_cy: Bacteriocin class IIc cyclic gassericin A-like; InterPro: IPR020970 This class of bacteriocins was previously described as class V. The members include gassericin A, acidocin B and butyrovibriocin AR10, all of which are hydrophobic cyclical structures []. The N- and C-termini are covalently linked, and the circular molecule is resistant to several proteases and peptidases []. The immunity protein that protects Lactobacillus gasseri from the toxic effects of its bacteriocin, gassericin A, has been identified. It is found to be a small positively-charged hydrophobic peptide of 53 amino acids containing a putative transmembrane segment [] - a structure unlike that of the more common immunity proteins as found in PF08951 from PFAM.
Probab=21.85 E-value=1.3e+02 Score=19.06 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.0
Q ss_pred cceEEEEeccCCCccchhHHHHHHHHHHHH
Q psy5260 100 RLKVIHNYGHGGYGVTTAPGTSRYAVQLVK 129 (142)
Q Consensus 100 ~~~l~~~~G~gg~G~t~ap~~a~~la~~i~ 129 (142)
.+|+|..++- -|+.++|+..+-+.+.+.
T Consensus 31 ~~NIY~Ia~k--~GI~LApgwyqdivd~vs 58 (91)
T PF12173_consen 31 TANIYWIADK--FGIHLAPGWYQDIVDWVS 58 (91)
T ss_pred cCceEEEecc--cceeeccHHHHHHHHHHH
Confidence 4688888776 889999999988888773
No 69
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.54 E-value=1e+02 Score=14.22 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=9.4
Q ss_pred EEEEccCCeEEEcc
Q psy5260 29 YIIPHSNGAVTLGG 42 (142)
Q Consensus 29 y~~p~~~g~~~iG~ 42 (142)
.+.+..+|+++||.
T Consensus 9 ~i~~D~~G~lWigT 22 (24)
T PF07494_consen 9 SIYEDSDGNLWIGT 22 (24)
T ss_dssp EEEE-TTSCEEEEE
T ss_pred EEEEcCCcCEEEEe
Confidence 34566778999885
Done!