Query psy5260
Match_columns 142
No_of_seqs 171 out of 1133
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 21:52:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g3e_A D-amino-acid oxidase; F 99.9 4.1E-24 1.4E-28 165.7 12.3 130 3-134 195-336 (351)
2 1c0p_A D-amino acid oxidase; a 99.9 3.3E-23 1.1E-27 161.3 13.5 130 3-132 196-358 (363)
3 3nyc_A D-arginine dehydrogenas 99.9 4.1E-22 1.4E-26 154.8 13.0 127 3-132 223-359 (381)
4 1y56_B Sarcosine oxidase; dehy 99.9 7.4E-22 2.5E-26 154.1 12.0 128 3-132 220-356 (382)
5 2gf3_A MSOX, monomeric sarcosi 99.9 3.5E-21 1.2E-25 150.2 14.7 128 3-132 218-365 (389)
6 3pvc_A TRNA 5-methylaminomethy 99.9 1.5E-21 5.1E-26 164.2 12.4 127 3-132 480-650 (689)
7 3axb_A Putative oxidoreductase 99.9 2.7E-21 9.3E-26 154.3 12.2 127 3-132 267-419 (448)
8 1ryi_A Glycine oxidase; flavop 99.9 8.7E-21 3E-25 147.9 14.7 128 3-132 232-363 (382)
9 3dme_A Conserved exported prot 99.9 8.6E-22 2.9E-26 152.0 8.0 127 3-129 227-368 (369)
10 3ps9_A TRNA 5-methylaminomethy 99.9 3.3E-21 1.1E-25 161.7 12.1 128 3-133 484-647 (676)
11 2gag_B Heterotetrameric sarcos 99.8 7.7E-20 2.6E-24 143.3 12.3 129 3-133 243-377 (405)
12 2uzz_A N-methyl-L-tryptophan o 99.8 3.1E-20 1.1E-24 144.3 9.7 127 3-132 213-358 (372)
13 3c4n_A Uncharacterized protein 99.8 6.8E-19 2.3E-23 139.4 12.1 125 3-133 250-399 (405)
14 2oln_A NIKD protein; flavoprot 99.8 6.4E-18 2.2E-22 132.6 14.4 126 3-132 221-375 (397)
15 3dje_A Fructosyl amine: oxygen 99.8 2.6E-18 8.7E-23 136.6 10.8 130 3-133 231-386 (438)
16 1pj5_A N,N-dimethylglycine oxi 99.6 1.1E-15 3.7E-20 130.8 11.9 125 3-132 220-380 (830)
17 2qcu_A Aerobic glycerol-3-phos 99.6 4.6E-14 1.6E-18 114.6 13.9 127 3-132 226-373 (501)
18 2rgh_A Alpha-glycerophosphate 99.5 1.1E-12 3.9E-17 108.3 14.9 123 3-132 266-412 (571)
19 3da1_A Glycerol-3-phosphate de 99.4 1.1E-11 3.8E-16 102.2 14.7 125 3-134 247-394 (561)
20 3cgv_A Geranylgeranyl reductas 96.3 0.01 3.4E-07 45.5 6.7 99 26-132 209-315 (397)
21 3atr_A Conserved archaeal prot 94.6 0.3 1E-05 38.5 9.8 98 25-132 214-320 (453)
22 3oz2_A Digeranylgeranylglycero 93.8 0.17 5.7E-06 38.2 6.7 99 26-133 209-316 (397)
23 3i6d_A Protoporphyrinogen oxid 91.5 0.7 2.4E-05 35.9 7.6 80 53-132 379-468 (470)
24 3nix_A Flavoprotein/dehydrogen 90.5 0.09 3.1E-06 40.6 1.5 100 25-133 214-327 (421)
25 2weu_A Tryptophan 5-halogenase 89.9 0.69 2.3E-05 36.8 6.2 94 25-130 277-374 (511)
26 2ivd_A PPO, PPOX, protoporphyr 85.1 0.53 1.8E-05 36.9 2.9 83 54-136 386-477 (478)
27 3ka7_A Oxidoreductase; structu 84.1 1.2 4.1E-05 34.2 4.4 75 55-130 343-425 (425)
28 2gmh_A Electron transfer flavo 82.0 4.5 0.00015 33.1 7.3 99 27-133 273-386 (584)
29 3lov_A Protoporphyrinogen oxid 82.0 2.3 7.8E-05 33.3 5.4 82 53-134 376-467 (475)
30 3nks_A Protoporphyrinogen oxid 71.5 2.8 9.6E-05 32.7 3.1 78 54-131 386-473 (477)
31 3i3l_A Alkylhalidase CMLS; fla 63.6 4.7 0.00016 33.2 3.0 102 24-132 232-346 (591)
32 2e4g_A Tryptophan halogenase; 62.1 21 0.0007 28.7 6.6 94 25-129 300-396 (550)
33 3qj4_A Renalase; FAD/NAD(P)-bi 57.1 34 0.0012 25.1 6.7 77 53-131 258-341 (342)
34 3kkj_A Amine oxidase, flavin-c 56.7 33 0.0011 23.0 6.1 54 78-134 273-329 (336)
35 3rp8_A Flavoprotein monooxygen 48.9 16 0.00054 27.8 3.7 23 108-130 315-337 (407)
36 2aqj_A Tryptophan halogenase, 47.5 39 0.0013 26.9 5.9 92 25-129 270-365 (538)
37 1w4x_A Phenylacetone monooxyge 45.7 0.28 9.6E-06 39.7 -7.1 54 59-115 232-287 (542)
38 4dgk_A Phytoene dehydrogenase; 45.2 11 0.00039 29.4 2.4 38 100-137 457-496 (501)
39 1xjs_A NIFU-like protein; SR17 41.8 74 0.0025 21.1 5.8 47 83-131 36-83 (147)
40 2qq4_A Iron-sulfur cluster bio 41.8 29 0.00099 22.9 3.6 47 83-131 34-81 (138)
41 1su0_B NIFU like protein ISCU; 38.4 30 0.001 23.5 3.4 47 83-131 35-82 (159)
42 4eb5_C NIFU protein (NIFU-1); 38.0 34 0.0012 23.1 3.6 48 82-131 27-75 (153)
43 3lvl_A NIFU-like protein; prot 37.5 36 0.0012 22.1 3.6 47 84-131 34-81 (129)
44 3nrn_A Uncharacterized protein 35.4 70 0.0024 24.2 5.5 73 56-134 328-407 (421)
45 2z7e_A ISCU protein, NIFU-like 33.1 23 0.0008 24.0 2.1 48 83-131 31-80 (157)
46 3fmw_A Oxygenase; mithramycin, 28.6 58 0.002 26.4 4.1 26 106-131 334-359 (570)
47 2di0_A Activating signal coint 24.3 69 0.0023 18.8 2.8 23 52-74 7-29 (71)
48 1sez_A Protoporphyrinogen oxid 23.7 93 0.0032 24.1 4.4 83 53-135 405-496 (504)
49 2kkc_A Sequestosome-1; P62, PB 21.5 1.1E+02 0.0038 19.1 3.6 27 56-82 42-68 (102)
50 1b37_A Protein (polyamine oxid 20.5 98 0.0034 23.9 3.9 77 54-133 362-459 (472)
51 2ktr_A Sequestosome-1; autopha 20.2 1.2E+02 0.0041 19.5 3.6 27 56-82 57-83 (117)
No 1
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=99.91 E-value=4.1e-24 Score=165.72 Aligned_cols=130 Identities=35% Similarity=0.528 Sum_probs=113.0
Q ss_pred eeeccceEEEEeCCCcceEEEe-------CCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCC
Q psy5260 3 CLLVCSTPLQVWAPWLSHFYYL-------DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEA 75 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~~~~~i~~-------~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~ 75 (142)
+.|+|||++.+++|.+++.++. +...|++|+.+ ++++|++.+..+++..++++..+++++.+.+++|.+.+.
T Consensus 195 l~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~-~~~iGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~ 273 (351)
T 3g3e_A 195 LQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQ-TVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNA 273 (351)
T ss_dssp CEEEEEEEEEEECTTCCSEEEECCTTTCTTCSCEEEECSS-CEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGC
T ss_pred eeecCCcEEEEeCCCcceEEEeccccCCCCceeEEEeCCC-cEEEeeeeecCCCCCCCCHHHHHHHHHHHHHhCCCccCC
Confidence 6899999999998766655541 23579999988 899999998877888889999999999999999999989
Q ss_pred ceeeeeEeeecCCCC-ce----eeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 76 PVLYEWCGLRPHRSL-VR----VEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 76 ~v~~~w~G~Rp~t~D-p~----ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
++.+.|+|+||+|+| |+ ||.. ++.+|+|+++||+|+|+++||++|+.+|++|.+.+.+
T Consensus 274 ~i~~~w~G~r~~t~D~p~~~~~ig~~-~~~~~~~~~~G~~g~G~~~ap~~g~~la~li~~~~~~ 336 (351)
T 3g3e_A 274 RIIGERTGFRPVRPQIRLEREQLRTG-PSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEE 336 (351)
T ss_dssp EEEEEEEEEEEECSSCEEEEEEECCS-SSCEEEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEeeeeEeeCCCCCCccceeeeccCC-CCCCeEEEEeCCCcchHhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999 64 4432 3468999999999999999999999999999998764
No 2
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=99.90 E-value=3.3e-23 Score=161.31 Aligned_cols=130 Identities=25% Similarity=0.353 Sum_probs=109.8
Q ss_pred eeeccceEEEEeCCC-cceEEE--eCCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCC------C
Q psy5260 3 CLLVCSTPLQVWAPW-LSHFYY--LDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRL------E 73 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~-~~~~i~--~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l------~ 73 (142)
+.|+|||++.++.+. +..... .....|++|+.+|++++|++.+..+++..++++..+.+++++.+++|.+ +
T Consensus 196 ~~p~rg~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~ 275 (363)
T 1c0p_A 196 AEPIRGQTVLVKSPCKRCTMDSSDPASPAYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIE 275 (363)
T ss_dssp EEEEEEEEEEEECCCCCCEEECSCTTCCEEEEEETTTEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGSSSSSGG
T ss_pred ccccCCeEEEEeCCcccceEeeccCCCcEEEEEcCCCEEEEEeeeccCCCCCCCCHHHHHHHHHHHHHhCccccCCcccc
Confidence 689999999998754 222221 2134899999999999999998877888889999999999999999998 4
Q ss_pred CCceeeeeEeeecCCCC--ceeeEee--------------------eCc--ceEEEEeccCCCccchhHHHHHHHHHHHH
Q psy5260 74 EAPVLYEWCGLRPHRSL--VRVEIEQ--------------------IGR--LKVIHNYGHGGYGVTTAPGTSRYAVQLVK 129 (142)
Q Consensus 74 ~~~v~~~w~G~Rp~t~D--p~ig~~~--------------------~~~--~~l~~~~G~gg~G~t~ap~~a~~la~~i~ 129 (142)
+.++++.|+|+||+|+| |++|... ++. +|+|+++||+|+||++||++|+.+|++|.
T Consensus 276 ~~~i~~~w~G~rp~t~d~~piig~~~~~~~~~~~~~~d~~~~~g~~p~~~~~~~~~a~G~~g~G~~~a~~~g~~~a~li~ 355 (363)
T 1c0p_A 276 GIEVLRHNVGLRPARRGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDVAQLVD 355 (363)
T ss_dssp GCEEEEEEEEEEEEETTSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cceEeeceEEECCCCCCCceeEEEecccccccccCccccccccccccccccceEEEecCCCCcchheeccHHHHHHHHHH
Confidence 57899999999999999 8888631 113 79999999999999999999999999999
Q ss_pred hhc
Q psy5260 130 QAL 132 (142)
Q Consensus 130 g~~ 132 (142)
+.+
T Consensus 356 ~~l 358 (363)
T 1c0p_A 356 EAF 358 (363)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 3
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.88 E-value=4.1e-22 Score=154.79 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=104.2
Q ss_pred eeeccceEEEEeCCC-c--c---eEEEeCCeEEEEEccCCeEEEccceec--CCCCCCCCHHHHHHHHHHHHhhCCCCCC
Q psy5260 3 CLLVCSTPLQVWAPW-L--S---HFYYLDYDVYIIPHSNGAVTLGGCRHY--DSYSRDISRHDTASILERCYSLLPRLEE 74 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~-~--~---~~i~~~~~~y~~p~~~g~~~iG~t~~~--~~~~~~~~~~~~~~l~~~~~~~~P~l~~ 74 (142)
+.|+|||++.++.|. . . .+...+...|++|.. |++++|++.+. ...+..+++...+++++.+.+ +|.+.+
T Consensus 223 ~~p~rg~~~~~~~~~~~~~~~~p~~~~~~~~~y~~p~~-g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 300 (381)
T 3nyc_A 223 LQPKRRSAFIFAPPPGIDCHDWPMLVSLDESFYLKPDA-GMLLGSPANADPVEAHDVQPEQLDIATGMYLIEE-ATTLTI 300 (381)
T ss_dssp CEEEEEEEEEECCCTTCCCTTCCEEEETTSSCEEEEET-TEEEEECCCCEECCSSCCCCCHHHHHHHHHHHHH-HBSCCC
T ss_pred eeeeEEEEEEECCCcCCCcCccceEEeCCCCEEEEeCC-CcEEEeCCcCCCCCcccCCCChHHHHHHHHHHHh-cCCCcc
Confidence 689999999998653 1 1 222234467999988 79999998865 234566777778888888766 578888
Q ss_pred CceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 75 APVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 75 ~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
.++.+.|+|+||+|+| |+||.. ++.+|+|+++||+|+||++||++|+++|++|.|.-
T Consensus 301 ~~~~~~w~G~r~~t~D~~p~ig~~-~~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~g~~ 359 (381)
T 3nyc_A 301 RRPEHTWAGLRSFVADGDLVAGYA-ANAEGFFWVAAQGGYGIQTSAAMGEASAALIRHQP 359 (381)
T ss_dssp CCCSEEEEEEEEECTTSCCEEEEC-TTSTTEEEEECCTTCTTTTHHHHHHHHHHHHTTCC
T ss_pred cceeeeeEEccccCCCCCceecCC-CCCCCeEEEEcCCChhHhhCHHHHHHHHHHHhCCC
Confidence 8999999999999999 999975 46789999999999999999999999999998764
No 4
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.87 E-value=7.4e-22 Score=154.09 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=108.3
Q ss_pred eeeccceEEEEeCC--Ccc-eEEEe-C-CeEEEEEccCCeEEEcc-c-eecCCCCCCCCHHHHHHHHHHHHhhCCCCCCC
Q psy5260 3 CLLVCSTPLQVWAP--WLS-HFYYL-D-YDVYIIPHSNGAVTLGG-C-RHYDSYSRDISRHDTASILERCYSLLPRLEEA 75 (142)
Q Consensus 3 ~~p~rGqv~~~~~p--~~~-~~i~~-~-~~~y~~p~~~g~~~iG~-t-~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~ 75 (142)
+.|.|||++.++++ ... ..++. + ...|++|..+| +++|+ + .+..+++..++++..+++++.+.+++|.+.+.
T Consensus 220 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g-~~iG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~ 298 (382)
T 1y56_B 220 IEPYKHQAVITQPIKRGTINPMVISFKYGHAYLTQTFHG-GIIGGIGYEIGPTYDLTPTYEFLREVSYYFTKIIPALKNL 298 (382)
T ss_dssp CEEEEEEEEEECCCSTTSSCSEEEESTTTTEEEECCSSS-CCEEECSCCBSSCCCCCCCHHHHHHHHHHHHHHCGGGGGS
T ss_pred CCeeEeEEEEEccCCcccCCCeEEecCCCeEEEEEeCCe-EEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcCCC
Confidence 57899999999863 233 44443 2 46899999998 89994 3 34455677788899999999999999999889
Q ss_pred ceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 76 PVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 76 ~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
++.+.|+|+||+|+| |+||.. ++.+|+|+++||+|+||++||++|+.+|++|.+..
T Consensus 299 ~~~~~~~g~r~~t~d~~p~ig~~-~~~~~~~~~~G~~g~G~~~a~~~g~~la~~i~~~~ 356 (382)
T 1y56_B 299 LILRTWAGYYAKTPDSNPAIGRI-EELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGK 356 (382)
T ss_dssp EEEEEEEEEEEECTTSCCEEEEE-SSSBTEEEEECCTTCHHHHHHHHHHHHHHHHHHSS
T ss_pred CceEEEEeccccCCCCCcEeccC-CCCCCEEEEEecCcchHhhhHHHHHHHHHHHhCCC
Confidence 999999999999999 999975 46789999999999999999999999999999874
No 5
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.87 E-value=3.5e-21 Score=150.25 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=105.6
Q ss_pred eeeccceEEEEeCCC--------cceEEEe--CCeEEEEEccCC-eEEEccce-----ecCCCCCCC--CHHHHHHHHHH
Q psy5260 3 CLLVCSTPLQVWAPW--------LSHFYYL--DYDVYIIPHSNG-AVTLGGCR-----HYDSYSRDI--SRHDTASILER 64 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~--------~~~~i~~--~~~~y~~p~~~g-~~~iG~t~-----~~~~~~~~~--~~~~~~~l~~~ 64 (142)
+.|+|||++.++.+. ....+.. +...|++|..+| ++++|++. +.+..+..+ +++..+.+.+.
T Consensus 218 l~~~rg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~g~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (389)
T 2gf3_A 218 LQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAF 297 (389)
T ss_dssp CEEEEEEEEEECCCHHHHBGGGTCCEEEEEETTEEEEEECBSTTCCEEEEESSCCEECCTTTCCCCTTSSHHHHHHHHHH
T ss_pred eEEEEEEEEEEecCcccccccccCCEEEEeCCCCcEEEcCCCCCCcEEEEEcCCCCccCcccccCccCCCHHHHHHHHHH
Confidence 579999999998652 1222222 225799999988 99999765 223345556 78888999999
Q ss_pred HHhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 65 CYSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 65 ~~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+.++||.+.+ ++.+.|+|+||.|+| |+||.. ++.+|+|+++||+|+||++||++|+++|++|.+.-
T Consensus 298 ~~~~~P~l~~-~~~~~w~g~r~~t~D~~p~ig~~-~~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~~~~ 365 (389)
T 2gf3_A 298 LEEYMPGANG-ELKRGAVCMYTKTLDEHFIIDLH-PEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGK 365 (389)
T ss_dssp HHHHCGGGCS-CEEEEEEEEEEECTTSCCEEEEE-TTEEEEEEEECCTTCCGGGHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCCCC-CceEEEEEEeccCCCCCeEEccC-CCCCCEEEEECCccccccccHHHHHHHHHHHcCCC
Confidence 9999999877 899999999999998 999975 46789999999999999999999999999999874
No 6
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.86 E-value=1.5e-21 Score=164.20 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=109.9
Q ss_pred eeeccceEEEEeCCC----cceEEEeCCeEEEEEcc--CCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCC---
Q psy5260 3 CLLVCSTPLQVWAPW----LSHFYYLDYDVYIIPHS--NGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE--- 73 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~----~~~~i~~~~~~y~~p~~--~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~--- 73 (142)
+.|+|||++.++.+. ++.++..+ .|++|.. +|++++|++++.++.+..++++..+++++++.+++|.+.
T Consensus 480 l~p~rGq~~~~~~~~~~~~l~~v~~~~--~Yl~P~~~~~g~~~iGat~~~~~~d~~~~~~~~~~ll~~l~~~~P~l~~~~ 557 (689)
T 3pvc_A 480 LSAVRGQVSHIPTTPVLSQLQQVLCYD--GYLTPVNPANQHHCIGASYQRGDIATDFRLTEQQENRERLLRCLPQVSWPQ 557 (689)
T ss_dssp CEEEEEEEEEEECCTTGGGCCSEEESS--SEECCCBTTTTEEEEECCCEETBCCCCCCHHHHHHHHHHHHHHCTTCSGGG
T ss_pred cccccCcEEEECCCCccccCCeeEeCC--ceEccccCCCCeEEEEEeccCCCCCCCCCHHHHHHHHHHHHHhCCCccccc
Confidence 679999999998642 34444443 6999998 889999999998878888899999999999999999986
Q ss_pred --CCceeeeeEeeecCCCC--ceeeEeeeC-------------------------------cceEEEEeccCCCccchhH
Q psy5260 74 --EAPVLYEWCGLRPHRSL--VRVEIEQIG-------------------------------RLKVIHNYGHGGYGVTTAP 118 (142)
Q Consensus 74 --~~~v~~~w~G~Rp~t~D--p~ig~~~~~-------------------------------~~~l~~~~G~gg~G~t~ap 118 (142)
+.++.+.|+|+||+|+| |+||.. ++ .+|+|+++||||+|+++||
T Consensus 558 ~~~~~~~~~w~G~R~~t~D~lPiiG~~-p~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~G~g~~Gl~~ap 636 (689)
T 3pvc_A 558 QVDVSDNQARCGVRCAIRDHLPMVGAV-PDYAATLAQYQDLSRRIQHGGESEVNDIAVAPVWPELFMVGGLGSRGLCSAP 636 (689)
T ss_dssp GCCCTTCCEEEEEEEECTTSCCEEEEE-ECHHHHHHHSTTHHHHC--------CCCCCCCEEEEEEEEECCTTCHHHHHH
T ss_pred cccccccceeEEEeeecCCCCcccCcC-CCHHHHHHHHHhhhccccccccccccccccCCCCCChHHhhcccccHHHHHH
Confidence 45678999999999999 999975 33 4899999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy5260 119 GTSRYAVQLVKQAL 132 (142)
Q Consensus 119 ~~a~~la~~i~g~~ 132 (142)
++|+++|++|.|.-
T Consensus 637 ~~ae~lA~~i~g~~ 650 (689)
T 3pvc_A 637 LVAEILAAQMFGEP 650 (689)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999998764
No 7
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=99.86 E-value=2.7e-21 Score=154.31 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=107.4
Q ss_pred eeeccceEEEEeCCC--cc--------------eEEEeCCeEEEEEccC-CeEEEccceec---CCCCC--CCCHHH-HH
Q psy5260 3 CLLVCSTPLQVWAPW--LS--------------HFYYLDYDVYIIPHSN-GAVTLGGCRHY---DSYSR--DISRHD-TA 59 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~--~~--------------~~i~~~~~~y~~p~~~-g~~~iG~t~~~---~~~~~--~~~~~~-~~ 59 (142)
+.|+|||++.++.+. +. .++......|++|+.+ |++++|++.+. ..++. .++++. .+
T Consensus 267 ~~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~y~~p~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~ 346 (448)
T 3axb_A 267 SRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILPKRVLVRPAPREGSFWVQLSDNLGRPFALEEDPQPEEHYYSL 346 (448)
T ss_dssp EEEEEEEEEEEECCSHHHHHHHHHCCTTSSSSCCEEEETTTEEEEEETTTTEEEEEECCCTTSCBCCCSSCCCCHHHHHH
T ss_pred ccccceEEEEeCCcccccccccccccccccCCCceEEcCCceEEeecCCCCeEEEecCCcccCCcccccccCCChHHHHH
Confidence 689999999998753 22 2333334689999988 89999998863 33444 677888 89
Q ss_pred HHHHHHHhhCCCCCCCceeeeeEeeecC-CCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 60 SILERCYSLLPRLEEAPVLYEWCGLRPH-RSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 60 ~l~~~~~~~~P~l~~~~v~~~w~G~Rp~-t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
++++.+.++||.+.+.++.+.|+|+||+ |+| |+||.. + +|+|+++||+|+||++||++|+.+|++|.+.-
T Consensus 347 ~l~~~~~~~~P~l~~~~~~~~w~G~r~~~t~d~~p~ig~~-~--~~l~~a~G~~g~G~~~ap~~g~~la~~i~~~~ 419 (448)
T 3axb_A 347 AILPILSLYLPQFQDAYPSGGWAGHYDISFDANPVVFEPW-E--SGIVVAAGTSGSGIMKSDSIGRVAAAVALGME 419 (448)
T ss_dssp HTHHHHHHHCGGGTTCCCSEEEEEEEEEETTSSCEEECGG-G--CSEEEEECCTTCCGGGHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCcCcccCCcccceEEEeccccCCCCcEeeec-C--CCEEEEECCCchhHhHhHHHHHHHHHHHcCCC
Confidence 9999999999999989999999999999 999 999975 2 79999999999999999999999999998863
No 8
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.86 E-value=8.7e-21 Score=147.87 Aligned_cols=128 Identities=23% Similarity=0.380 Sum_probs=112.0
Q ss_pred eeeccceEEEEeCC--CcceEEEeCCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeee
Q psy5260 3 CLLVCSTPLQVWAP--WLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYE 80 (142)
Q Consensus 3 ~~p~rGqv~~~~~p--~~~~~i~~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~ 80 (142)
+.|+|||++.++.+ .++..++.+ +.|++|..+|++++|++.+...++..++++..+.+++.+.+++|.+.+.++.+.
T Consensus 232 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~p~~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~ 310 (382)
T 1ryi_A 232 FLPVKGECLSVWNDDIPLTKTLYHD-HCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRF 310 (382)
T ss_dssp CEEEEEEEEEEECCSSCCCSEEEET-TEEEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGSEEEEE
T ss_pred eeccceEEEEECCCCCCccceEEcC-CEEEEEcCCCeEEEeecccccCCCCCCCHHHHHHHHHHHHHhCCCcCCCceeeE
Confidence 57899999999865 244555555 579999989999999998876777788889999999999999999988899999
Q ss_pred eEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 81 WCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 81 w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
|+|+||+++| |++|.. ++.+|+|+++||+|+|+++||++|+++|++|.+..
T Consensus 311 w~g~~~~t~d~~p~ig~~-~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~~~ 363 (382)
T 1ryi_A 311 WAGLRPGTKDGKPYIGRH-PEDSRILFAAGHFRNGILLAPATGALISDLIMNKE 363 (382)
T ss_dssp EEEEEEECSSSCCEEEEE-TTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTTCC
T ss_pred EEEecccCCCCCcEeccC-CCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhCCC
Confidence 9999999998 999975 45689999999999999999999999999998764
No 9
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.85 E-value=8.6e-22 Score=152.00 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=105.9
Q ss_pred eeeccceEEEEeCC-CcceEEEe-----CCeEEEEEccCCeEEEccceec-CCCCCCCCHHHHHHHHHHHHhhCCCCCCC
Q psy5260 3 CLLVCSTPLQVWAP-WLSHFYYL-----DYDVYIIPHSNGAVTLGGCRHY-DSYSRDISRHDTASILERCYSLLPRLEEA 75 (142)
Q Consensus 3 ~~p~rGqv~~~~~p-~~~~~i~~-----~~~~y~~p~~~g~~~iG~t~~~-~~~~~~~~~~~~~~l~~~~~~~~P~l~~~ 75 (142)
+.|+|||++.++.+ .+++.++. ...+++.+..+|++++|++.+. +.++..++++..+++++.+.+++|.+.+.
T Consensus 227 i~p~rG~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~iG~t~e~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~ 306 (369)
T 3dme_A 227 EYLCKGSYFTLAGRAPFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWIATEDYTLDPRRADVFYAAVRSYWPALPDG 306 (369)
T ss_dssp CEEEEEEEEECSSSCSCSSEEEECTTCSSCCCCEEECTTSCEEECCCCEEESSCCCCCCGGGGGGHHHHHHTTCTTCCTT
T ss_pred eeecceEEEEECCCCccCceeecCCCCCCceEEEeCccCCcEEECCCcccccccccccCHHHHHHHHHHHHHHCCCCChh
Confidence 67999999999864 33444441 1246788888899999999886 66788888899999999999999999999
Q ss_pred ceeeeeEeeecCC-----CC--cee-eEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHH
Q psy5260 76 PVLYEWCGLRPHR-----SL--VRV-EIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVK 129 (142)
Q Consensus 76 ~v~~~w~G~Rp~t-----~D--p~i-g~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~ 129 (142)
++++.|+|+||.+ +| |+| |...+..+|+|+++||+++|+++||++|+.+|++|.
T Consensus 307 ~v~~~w~G~Rp~~~~~~~~d~~p~i~g~~~~~~~~l~~~~G~~~~G~t~ap~~a~~~a~~i~ 368 (369)
T 3dme_A 307 ALAPGYTGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARLA 368 (369)
T ss_dssp CCEEEEEEEEEESSCTTSCCCCCEEECHHHHCCTTEEEEECCCTTHHHHHHHHHHHHHHHHC
T ss_pred hceecceeccccccCCCCCcCCeEEecccccCCCCEEEEeCCCCchHhccHHHHHHHHHHhh
Confidence 9999999999997 34 777 652135789999999999999999999999999984
No 10
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.85 E-value=3.3e-21 Score=161.67 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=110.0
Q ss_pred eeeccceEEEEeCCC----cceEEEeCCeEEEEEcc--CCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCC---
Q psy5260 3 CLLVCSTPLQVWAPW----LSHFYYLDYDVYIIPHS--NGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE--- 73 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~----~~~~i~~~~~~y~~p~~--~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~--- 73 (142)
+.|+|||++.++.+. ++.++..+ .|++|.. +|++++|++++..+.+..++++..+++++++.+++|.+.
T Consensus 484 l~p~rGq~~~~~~~~~~~~l~~~l~~~--~Yl~P~~~~~g~~~iG~t~~~~~~d~~~~~~~~~~~l~~l~~~~P~l~~~~ 561 (676)
T 3ps9_A 484 VYSVAGQVSHIPTTPELAELKQVLCYD--GYLTPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAK 561 (676)
T ss_dssp CEEEEEEEEEEECCTTGGGCCSEEESS--SEECCCBTTTTEEEEECCCEETCCCCCCCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred ceeecCEEEEECCCcccccCCceeECC--eeeccccCCCCeEEEeeccCCCCCCCCCCHHHHHHHHHHHHHhCCCccccc
Confidence 679999999998642 34445443 6999998 789999999998888888899999999999999999875
Q ss_pred --CCceeeeeEeeecCCCC--ceeeEeeeC-----------------------cceEEEEeccCCCccchhHHHHHHHHH
Q psy5260 74 --EAPVLYEWCGLRPHRSL--VRVEIEQIG-----------------------RLKVIHNYGHGGYGVTTAPGTSRYAVQ 126 (142)
Q Consensus 74 --~~~v~~~w~G~Rp~t~D--p~ig~~~~~-----------------------~~~l~~~~G~gg~G~t~ap~~a~~la~ 126 (142)
+.++.+.|+|+||+|+| |+||.. ++ .+|+|+++||||+|+++||++|+++|+
T Consensus 562 ~~d~~~~~~~~G~R~~t~D~lPiiG~~-p~~~~~~~~y~~l~~~~~~~~~~~~~~~l~~a~G~g~~Gl~~Ap~~ae~lA~ 640 (676)
T 3ps9_A 562 EVDVSDKEARCGVRCATRDHLPMVGNV-PDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAPLCAEILAA 640 (676)
T ss_dssp TCCCTTCCEEEEEEEECTTCCCEEEEE-ECHHHHHHHTTTTTSCCTTCCSCCEEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCcccccceEEEEeCccCCcCCccCcC-CChHHHHHHHHhhhccccccccCCCCCCEeeeecccccHHHHHHHHHHHHHH
Confidence 45678999999999999 999975 34 589999999999999999999999999
Q ss_pred HHHhhcC
Q psy5260 127 LVKQALD 133 (142)
Q Consensus 127 ~i~g~~~ 133 (142)
+|.|.-.
T Consensus 641 ~i~g~~~ 647 (676)
T 3ps9_A 641 QMSDEPI 647 (676)
T ss_dssp HHTTCCC
T ss_pred HHcCCCC
Confidence 9987643
No 11
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.82 E-value=7.7e-20 Score=143.32 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=107.8
Q ss_pred eeeccceEEEEeC--CCcceEEE-eCCeEEEEEccCCeEEEccceec-CCCCCCCCHHHHHHHHHHHHhhCCCCCCCcee
Q psy5260 3 CLLVCSTPLQVWA--PWLSHFYY-LDYDVYIIPHSNGAVTLGGCRHY-DSYSRDISRHDTASILERCYSLLPRLEEAPVL 78 (142)
Q Consensus 3 ~~p~rGqv~~~~~--p~~~~~i~-~~~~~y~~p~~~g~~~iG~t~~~-~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~ 78 (142)
+.|.+||++.+++ +.+..++. .+...|++|..+|++++|++.+. .+++..++.+..+++.+.+.+++|.+.+.++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~ 322 (405)
T 2gag_B 243 IQSHPLQALVSELFEPVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIQEQMAAAVELFPIFARAHVL 322 (405)
T ss_dssp EEEEEEEEEEEEEBCSCCCSEEEETTTTEEEEECTTSEEEEEEEECSSCCCSSCCCTHHHHHHHHHHHHHCGGGGGCEEC
T ss_pred ccccceeEEEecCCccccCceEEeCCCcEEEEEcCCCcEEEEeccCCCCccccCCCHHHHHHHHHHHHHhCCccccCCcc
Confidence 5688999998874 22334444 23468999998999999998873 44556677788999999999999999888999
Q ss_pred eeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 79 YEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 79 ~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
+.|+|+||+++| |+||.. + .+|+|+++||+|+||++||.+|+.+|++|.+...
T Consensus 323 ~~w~g~~~~t~d~~p~ig~~-~-~~~l~~~~G~~g~G~~~a~~~g~~la~~i~g~~~ 377 (405)
T 2gag_B 323 RTWGGIVDTTMDASPIISKT-P-IQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEP 377 (405)
T ss_dssp EEEEEEEEEETTSCCEEEEC-S-SBTEEEEECCGGGCSTTHHHHHHHHHHHHHHTSC
T ss_pred eEEeeccccCCCCCCEeccc-C-CCCEEEEecCCCchhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999 999975 2 6899999999999999999999999999998743
No 12
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.82 E-value=3.1e-20 Score=144.26 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=100.3
Q ss_pred eeeccceEEEEeCCC-------cceEEEe--C-CeEEEEEccCCeEEEcccee---c----CCCCCCCCHHHHHHHHHHH
Q psy5260 3 CLLVCSTPLQVWAPW-------LSHFYYL--D-YDVYIIPHSNGAVTLGGCRH---Y----DSYSRDISRHDTASILERC 65 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~-------~~~~i~~--~-~~~y~~p~~~g~~~iG~t~~---~----~~~~~~~~~~~~~~l~~~~ 65 (142)
+.|+|||++.++.+. +..+... + ...|++|+.+|++++|++.. . +..+..++++..+++.+.+
T Consensus 213 ~~p~rg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~~iG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~ 292 (372)
T 2uzz_A 213 VQPVRKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVVSDGSEAFPFL 292 (372)
T ss_dssp CEEEECCEEEECCCGGGSTTTTCCEEEEECTTCCEEEEECCSSSCEEEEESSCCEECCSGGGCCCTTTSTTGGGSSHHHH
T ss_pred ceEEEEEEEEEEeccccCccccCCEEEEecCCCCeEEecCCCCCeEEEEecCCCCccCChhhccCCCCCHHHHHHHHHHH
Confidence 579999999997642 2222221 2 35788898888999998652 1 1112333456678899999
Q ss_pred HhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 66 YSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 66 ~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
.++||.+. ++.+.|+|+||+|+| |+||.. ++.+|+|+++||+|+|+++||++|+++|++|.+.-
T Consensus 293 ~~~~P~l~--~~~~~~~g~r~~t~d~~p~ig~~-~~~~~l~~~~G~~g~G~~~ap~~g~~la~~i~~~~ 358 (372)
T 2uzz_A 293 RNVLPGIG--CCLYGAACTYDNSPDEDFIIDTL-PGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKK 358 (372)
T ss_dssp HHHSCSCC--CEEEECCCEEEECTTSCCCEEEE-TTEEEEEEECCCCSCCGGGHHHHHHHHHHHHTTCC
T ss_pred HHHCCCCC--ccceeeEEeeccCCCCCeEEecC-CCCCCEEEEeCCCccchhccHHHHHHHHHHHhCCC
Confidence 99999986 788999999999999 999975 46789999999999999999999999999998864
No 13
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=99.79 E-value=6.8e-19 Score=139.39 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=98.6
Q ss_pred eeeccceEEEEeCCC--cceEEEeCCeEEEEEccCCeEEEcccee--cCCCC----------CCCCHHHHHHHHHHHHhh
Q psy5260 3 CLLVCSTPLQVWAPW--LSHFYYLDYDVYIIPHSNGAVTLGGCRH--YDSYS----------RDISRHDTASILERCYSL 68 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~--~~~~i~~~~~~y~~p~~~g~~~iG~t~~--~~~~~----------~~~~~~~~~~l~~~~~~~ 68 (142)
+.|++||++.++.|. ...++... .+|++|..+|.+++|++.. ..+++ ...+.+..+.+.+.+ ++
T Consensus 250 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~y~~p~~~g~~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 327 (405)
T 3c4n_A 250 HGRAYRQFPRLDLLSGAQTPVLRAS-GLTLRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLRRELLEDLVGLM-DA 327 (405)
T ss_dssp CEEEEEECCEECSCCCTTCCEEEET-TEEEEEETTEEEEECCCCSCBCSSCCCCCCCBTTBCCSSCHHHHHHHHHHT-TT
T ss_pred cccceeEEEEECCCCccCCCeEECC-cEEEEEcCCCeEEEeccccccccCcCcccccccccccCCCHHHHHHHHHHH-Hh
Confidence 478999999998653 23455544 5899999998888998743 32232 234567777777664 99
Q ss_pred CCCCCCCc---------eeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 69 LPRLEEAP---------VLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 69 ~P~l~~~~---------v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
||.+.+.+ +.+.|+|+||+|+| |+||.. + +|+|+++||+|+ +++||++|+++|++|.+..+
T Consensus 328 ~P~l~~~~~~~~r~~~~i~~~w~G~r~~t~D~~P~ig~~-~--~gl~~a~G~~g~-~~~ap~~a~~la~~i~~~~~ 399 (405)
T 3c4n_A 328 VPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQAEEL-A--PGLHLLLGGPLA-DTLGLAAAHELAQRVSASLE 399 (405)
T ss_dssp CGGGGSSCBCCCSSGGGSCEEEEEEGGGCTTCCCEEEEE-E--TTEEEEECCTTH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccccCccccccccceeeEEEeecCcCCCCCCEeccc-C--CCeEEEEccCcH-HHHHHHHHHHHHHHHhCchh
Confidence 99987765 88999999999999 999975 2 799999999886 59999999999999998754
No 14
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.77 E-value=6.4e-18 Score=132.65 Aligned_cols=126 Identities=10% Similarity=-0.006 Sum_probs=101.0
Q ss_pred eeeccceEEEEeCCC----cceEEEe--CC-----eEEEEEccCC----eEEEcccee------cCCCCCCCCHHHHHHH
Q psy5260 3 CLLVCSTPLQVWAPW----LSHFYYL--DY-----DVYIIPHSNG----AVTLGGCRH------YDSYSRDISRHDTASI 61 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~----~~~~i~~--~~-----~~y~~p~~~g----~~~iG~t~~------~~~~~~~~~~~~~~~l 61 (142)
+.|.|||++.++.+. +..++.. +. ..|++|..+| ++++|++.+ .+..+..++++..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (397)
T 2oln_A 221 YSVYEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQMDRL 300 (397)
T ss_dssp EEEEEEEEEEEEBCSCCSCCCEEEEECCCCSSSCCCEEECCCCSSSSSSEEEEEECCCCSCCSSGGGCCSSCCHHHHHHH
T ss_pred eeEEEEEEEEEeecCcccCCCEEEEecCCCCcccceEEECCCCCCCCCceEEEEecCCCCCcCCCccccCCCCHHHHHHH
Confidence 578999999998642 2333321 11 5799998765 799997663 2233456778889999
Q ss_pred HHHHHhhCCCCCCCceeeeeEeeec--CCCC--ceeeEeeeC----cceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 62 LERCYSLLPRLEEAPVLYEWCGLRP--HRSL--VRVEIEQIG----RLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 62 ~~~~~~~~P~l~~~~v~~~w~G~Rp--~t~D--p~ig~~~~~----~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
.+.+.++||.+.+ ++.+.|+|+|+ +|+| |+||.. ++ .+|+|+++| |+||++||++|+++|++|.+.-
T Consensus 301 ~~~~~~~~p~l~~-~~~~~~~g~~~~p~t~D~~p~ig~~-~~~~~~~~~l~~a~G--g~G~~~ap~~g~~la~~i~~~~ 375 (397)
T 2oln_A 301 SGWLRDHLPTVDP-DPVRTSTCLAVLPTDPERQFFLGTA-RDLMTHGEKLVVYGA--GWAFKFVPLFGRICADLAVEDS 375 (397)
T ss_dssp HHHHHHHCTTBCS-SCSEEEEEEEEEESSTTCCCEEEES-TTTSTTGGGEEEEEE--SSCGGGHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCC-CceeEEEEEecCCcCCCCCeEeecC-CccccCCCCEEEEeC--cchhhccHHHHHHHHHHHhCCC
Confidence 9999999999876 78899999988 9999 999975 45 689999999 7999999999999999998864
No 15
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.76 E-value=2.6e-18 Score=136.61 Aligned_cols=130 Identities=9% Similarity=0.166 Sum_probs=97.8
Q ss_pred eeeccceEEEEeCCC-----c-c-eEEE-eCCeEEEEEccC-CeEEEcc---cee-cC----------CC-CCCCCHHHH
Q psy5260 3 CLLVCSTPLQVWAPW-----L-S-HFYY-LDYDVYIIPHSN-GAVTLGG---CRH-YD----------SY-SRDISRHDT 58 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~-----~-~-~~i~-~~~~~y~~p~~~-g~~~iG~---t~~-~~----------~~-~~~~~~~~~ 58 (142)
+.|+++++..+..+. + . .++. .+..+|++|.++ |.++||. .+. .. .. +...+++..
T Consensus 231 ~~p~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l~i~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~ 310 (438)
T 3dje_A 231 LRPTAWTLVHIALKPEERALYKNIPVIFNIERGFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMSIPFEKTQIPKEAE 310 (438)
T ss_dssp CEEEEEEEEEEECCGGGHHHHTTCCEEEETTTEEECSCCTTTCEEEEEECCSCEECEEECTTCCEEECCCCCSSCBHHHH
T ss_pred eeeEEEEEEEEEcChHHhhhhcCCCEEEECCCceecCCCCCCCeEEEEeCCCCccCCccCCCcccccCCcccccCCHHHH
Confidence 457766776665431 1 1 2333 345678888854 5577752 111 10 00 234556788
Q ss_pred HHHHHHHHhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 59 ASILERCYSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 59 ~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
+.+.+.+.++||.+.+.++.+.|+|+||+|+| |+||.. ++.+|+|+++||+|+||+++|++|+.+|++|+|...
T Consensus 311 ~~l~~~~~~~~P~l~~~~~~~~~~g~~~~t~D~~piig~~-p~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~g~~~ 386 (438)
T 3dje_A 311 TRVRALLKETMPQLADRPFSFARICWCADTANREFLIDRH-PQYHSLVLGCGASGRGFKYLPSIGNLIVDAMEGKVP 386 (438)
T ss_dssp HHHHHHHHHHCGGGTTCCCSEEEEEEEEECTTSCCEEEEC-SSCTTEEEEECCTTCCGGGTTTHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCcccccCCcceeeEEEeCcCCCCCeEEeec-CCCCCEEEEECCCCcchhhhHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999998 999975 467899999999999999999999999999998754
No 16
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.64 E-value=1.1e-15 Score=130.82 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=99.6
Q ss_pred eeeccceEEEEeCC-Cc----------c-eEEE-eCCeEEEEEccCCeEEEccceec---------CC------------
Q psy5260 3 CLLVCSTPLQVWAP-WL----------S-HFYY-LDYDVYIIPHSNGAVTLGGCRHY---------DS------------ 48 (142)
Q Consensus 3 ~~p~rGqv~~~~~p-~~----------~-~~i~-~~~~~y~~p~~~g~~~iG~t~~~---------~~------------ 48 (142)
+.|+|||++.+++. .+ . .++. .+...|++|..+ ++++|++... ..
T Consensus 220 l~p~~g~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~y~r~~~~-~l~iG~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 298 (830)
T 1pj5_A 220 LLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRHQDQDLYYREHGD-RYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMP 298 (830)
T ss_dssp CEEEEEEEEEESCCGGGTTTSCTTTCCCSCEEEEGGGTEEEEEETT-EEEEEECCSCCCBCCGGGSCCCCGGGCBTTBST
T ss_pred ceeceeEEEEEecCcccccccccccCCCCCeEEcCCCCEEEEEeCC-eEEEeccCCCCcccCcccccccccccccccccc
Confidence 67999999999753 11 1 2222 233579999876 8899986421 11
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHH
Q psy5260 49 YSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQ 126 (142)
Q Consensus 49 ~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~ 126 (142)
.+...+.+..+.+++.+.+++|.+.+.++.+.|+|+||+|+| |+||.. ++.+|+|+++|| |+++||++|+++|+
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~t~D~~PiIG~~-p~~~gl~va~G~---G~~~ap~~g~~la~ 374 (830)
T 1pj5_A 299 SRLDFTLEDFLPAWEATKQLLPALADSEIEDGFNGIFSFTPDGGPLLGES-KELDGFYVAEAV---WVTHSAGVAKAMAE 374 (830)
T ss_dssp TEECCCHHHHHHHHHHHHHHCGGGGGSCEEEEEEEEEEECTTSCCEEEEC-SSSBTEEEEESC---CGGGHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCccccccCcceEEEeecccCCCCCeeeccC-CCCCCEEEEECc---hHHhhHHHHHHHHH
Confidence 123467788899999999999999999999999999999999 999975 467899999997 79999999999999
Q ss_pred HHHhhc
Q psy5260 127 LVKQAL 132 (142)
Q Consensus 127 ~i~g~~ 132 (142)
+|.+.-
T Consensus 375 li~~~~ 380 (830)
T 1pj5_A 375 LLTTGR 380 (830)
T ss_dssp HHHHSS
T ss_pred HHhCCC
Confidence 998874
No 17
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=99.57 E-value=4.6e-14 Score=114.63 Aligned_cols=127 Identities=14% Similarity=0.189 Sum_probs=99.0
Q ss_pred eeeccceEEEEeCCC-c-ceEEEe---CCeEEEEEccCCeEEEccceec---CCCCCCCCHHHHHHHHHHHHhhCC-CCC
Q psy5260 3 CLLVCSTPLQVWAPW-L-SHFYYL---DYDVYIIPHSNGAVTLGGCRHY---DSYSRDISRHDTASILERCYSLLP-RLE 73 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~-~-~~~i~~---~~~~y~~p~~~g~~~iG~t~~~---~~~~~~~~~~~~~~l~~~~~~~~P-~l~ 73 (142)
+.|+|||.++++.+. . ...++. +..+|++|+.+|.+++|+|.+. +..+..++++..+++++.+.++|| .+.
T Consensus 226 i~p~rG~~~~~~~~~~~~~~~~~~~~dg~~~~~~P~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~l~ 305 (501)
T 2qcu_A 226 IRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHFKKQLS 305 (501)
T ss_dssp BCCEEEEEEEEECSSSCSCEEEEECTTSCEEEEEEETTTEEEEECCCEECCSCGGGCCCCHHHHHHHHHHHHHHBSSCCC
T ss_pred cccceeEEEEECCCCCCceEEEeecCCCCEEEEEEcCCCcEEEcCCCCCCCCCcCCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 679999999998642 1 233442 3468999999889999998754 234677888999999999999999 888
Q ss_pred CCceeeeeEeeecCCCC--ceeeEee----------eCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 74 EAPVLYEWCGLRPHRSL--VRVEIEQ----------IGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 74 ~~~v~~~w~G~Rp~t~D--p~ig~~~----------~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+.++++.|+|+||.++| |.++... .+.+|++..+|. |+|.++.+|+.+++++.+.+
T Consensus 306 ~~~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg---~~t~~~~~Ae~~~~~~~~~~ 373 (501)
T 2qcu_A 306 RDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGG---KLTTYRKLAEHALEKLTPYY 373 (501)
T ss_dssp GGGCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEECC---CGGGHHHHHHHHHHHHGGGS
T ss_pred cccEEEEEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEeCc---cccchHHHHHHHHHHHHHhh
Confidence 88999999999999998 6544321 022456666653 79999999999999999887
No 18
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=99.47 E-value=1.1e-12 Score=108.30 Aligned_cols=123 Identities=21% Similarity=0.226 Sum_probs=96.1
Q ss_pred eeeccceEEEEeCCC--cc-eEEEe----C-CeEEEEEccCCeEEEccceec---CCCCCCCCHHHHHHHHHHHHhhCCC
Q psy5260 3 CLLVCSTPLQVWAPW--LS-HFYYL----D-YDVYIIPHSNGAVTLGGCRHY---DSYSRDISRHDTASILERCYSLLPR 71 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~--~~-~~i~~----~-~~~y~~p~~~g~~~iG~t~~~---~~~~~~~~~~~~~~l~~~~~~~~P~ 71 (142)
+.|+|||.++++.+. .. ..++. + ..+|++|.. |.++||+|.+. +..+..++++..+.+++.+.++||.
T Consensus 266 i~p~rG~~l~~~~~~~~~~~~~~~~~~~~dgr~~~~~P~~-~~~~iG~t~~~~~~~~~~~~~~~~~~~~ll~~~~~~~P~ 344 (571)
T 2rgh_A 266 MRPTKGIHLVVDAKKLPVPQPTYFDTGKQDGRMVFAIPRE-NKTYFGTTDTDYQGDFTDPKVTQEDVDYLLDVINHRYPE 344 (571)
T ss_dssp BCCEEEEEEEEEGGGSCCSSCEEEECSSSSSCEEEEEEET-TEEEECCCCEECCSCSSSCCCCHHHHHHHHHHHHHHSTT
T ss_pred eeccceEEEEeccccCCCCcEEEEeccCCCCcEEEEEEcC-CeEEEcCCCcCCCCCcCCCCCCHHHHHHHHHHHHHhcCc
Confidence 789999999998532 22 33331 2 357999985 68999998763 3346778899999999999999997
Q ss_pred --CCCCceeeeeEeeecCCCC-----------ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 72 --LEEAPVLYEWCGLRPHRSL-----------VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 72 --l~~~~v~~~w~G~Rp~t~D-----------p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+.+.++++.|+|+||.++| |+|+. ..+|++.++|. + +|.++.+|+.+++++.+.+
T Consensus 345 ~~l~~~~v~~~waG~Rp~~~d~~~~~~~~~r~~~i~~---~~~gl~~v~GG--k-~Tt~r~~Ae~~~~~i~~~l 412 (571)
T 2rgh_A 345 ANITLADIEASWAGLRPLLIGNSGSPSTISRGSSLER---EPDGLLTLSGG--K-ITDYRKMAEGALRLIRQLL 412 (571)
T ss_dssp TCCCGGGCCEEEEEEECCBCC-----------EEEEE---CTTSCEEEEEC--C-GGGHHHHHHHHHHHHHHHH
T ss_pred cCCchhceeEEeEEeeeccCCCCCCcccCCCCcEEec---CCCCeEEEeCc--c-hhhHHHHHHHHHHHHHHHh
Confidence 4678899999999999975 23442 35789977663 3 9999999999999999887
No 19
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=99.38 E-value=1.1e-11 Score=102.18 Aligned_cols=125 Identities=24% Similarity=0.307 Sum_probs=96.7
Q ss_pred eeeccceEEEEeCCC--cce-EEE---eC-CeEEEEEccCCeEEEccceec---CCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy5260 3 CLLVCSTPLQVWAPW--LSH-FYY---LD-YDVYIIPHSNGAVTLGGCRHY---DSYSRDISRHDTASILERCYSLLPRL 72 (142)
Q Consensus 3 ~~p~rGqv~~~~~p~--~~~-~i~---~~-~~~y~~p~~~g~~~iG~t~~~---~~~~~~~~~~~~~~l~~~~~~~~P~l 72 (142)
+.|+|||.++++.+. ... +++ .+ ..+|++|. +|.++||+|.+. +..+..++++.++++++.+.++||.+
T Consensus 247 v~p~kG~~lvl~~~~~~~~~~~~~~~~~dgr~v~~iP~-~g~~~iGtT~~~~~~~~~~~~~t~~~i~~ll~~~~~~~P~l 325 (561)
T 3da1_A 247 LKLSKGVHLVVDQSRFPLRQAVYFDTESDGRMIFAIPR-EGKTYIGTTDTFYDKDIASPRMTVEDRDYILAAANYMFPSL 325 (561)
T ss_dssp EEEEEEEEEEEEGGGSCCSSEEEECCSSSCCCEEEEEE-TTEEEECCCCEEECSCTTCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred EEeccEEEEEECCccCCCceEEEeccCCCCcEEEEEec-CCCEEEcCCCCccCCCcCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999998532 233 333 12 34789999 679999999863 23578889999999999999999998
Q ss_pred C--CCceeeeeEeeecCCCC-----------ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 73 E--EAPVLYEWCGLRPHRSL-----------VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 73 ~--~~~v~~~w~G~Rp~t~D-----------p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
. ...++..|+|+||.+.| .+|.. ..+|++..+|- . +|.++.+|+.+++++...++.
T Consensus 326 ~~~~~~v~~~~aGlRPl~~~~~~~~~~~sR~~~i~~---~~~gli~i~Gg--k-~Tt~r~mAe~~~d~~~~~~~~ 394 (561)
T 3da1_A 326 RLTADDVESSWAGLRPLIHEEGKKASEISRKDEIFF---SDSGLISIAGG--K-LTGYRKMAERTVDAVAQGLNV 394 (561)
T ss_dssp CCCTTTEEEEEEEEEEEEEC-----------CCEEE---CSSCCEEECCC--C-STTHHHHHHHHHHHHHHHHTC
T ss_pred CCChhhEEEEeEEeccccCCCCCCccccccceEEEe---cCCCeEEEeCC--h-hhhHHHHHHHHHHHHHHhcCC
Confidence 6 78999999999998654 12221 23677777764 4 999999999999999888763
No 20
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=96.28 E-value=0.01 Score=45.50 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=66.9
Q ss_pred CeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC-ceeeEeeeCcceEE
Q psy5260 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-VRVEIEQIGRLKVI 104 (142)
Q Consensus 26 ~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D-p~ig~~~~~~~~l~ 104 (142)
++.|+.|..++++.+|-+...... ......+..+++..+.+|.+...++.+.|.|..|++.. +. . ..++++
T Consensus 209 g~~~~~P~~~~~~~vg~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~--~~~~v~ 280 (397)
T 3cgv_A 209 GYIWVFPKGEGMANVGIGSSINWI---HNRFELKNYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMP---I--TMPGLM 280 (397)
T ss_dssp EEEEEEEEETTEEEEEEEEETTTC---SCHHHHHHHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSC---C--EETTEE
T ss_pred ceEEEEECCCCeEEEEEEeccccc---cCCCCHHHHHHHHHHhCcCCCCCeEEeeeeeeeecCCCccc---e--eeCCEE
Confidence 467899999988888876654322 23344455556666666766678889999999998532 11 0 012333
Q ss_pred E-------EeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 105 H-------NYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 105 ~-------~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+ ...+.|.|+.+|...|..+|+.+...+
T Consensus 281 liGDAa~~~~P~~G~G~~~a~~~a~~la~~l~~~~ 315 (397)
T 3cgv_A 281 LVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAI 315 (397)
T ss_dssp ECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 234689999999999999998887654
No 21
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=94.57 E-value=0.3 Score=38.46 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=63.1
Q ss_pred CCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC-ceeeEeeeCcceE
Q psy5260 25 DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-VRVEIEQIGRLKV 103 (142)
Q Consensus 25 ~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D-p~ig~~~~~~~~l 103 (142)
+++.|+.|..++.+.+|-........ .+ ..+.+.+.+.++.|.+.+.++++.|.+..|.... +. .. .+++
T Consensus 214 ~g~~~~~P~~~~~~~vg~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~--~~~v 284 (453)
T 3atr_A 214 GGYWWYFPKGKNKVNVGLGIQGGMGY--PS--IHEYYKKYLDKYAPDVDKSKLLVKGGALVPTRRPLYT---MA--WNGI 284 (453)
T ss_dssp TSCEEEEEEETTEEEEEEEEESSSCC--CC--HHHHHHHHHHHHCTTEEEEEEEEEEEEEEECSSCCSC---SE--ETTE
T ss_pred CcEEEEEECCCCeEEEEEEecCCCCC--CC--HHHHHHHHHHhhhhhcCCCeEEeccceeccCCCCCCc---ee--cCCE
Confidence 34678889988888887655432111 11 2234444444556766667788888888876422 11 10 2344
Q ss_pred EEEec--------cCCCccchhHHHHHHHHHHHHhhc
Q psy5260 104 IHNYG--------HGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 104 ~~~~G--------~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
+..| +.|.|+.+|...|..+|+.+...+
T Consensus 285 -~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l 320 (453)
T 3atr_A 285 -IVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAF 320 (453)
T ss_dssp -EECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 4556 789999999999999999987654
No 22
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=93.80 E-value=0.17 Score=38.24 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=65.8
Q ss_pred CeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceE
Q psy5260 26 YDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKV 103 (142)
Q Consensus 26 ~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l 103 (142)
+..++.|..++...+|-....+ ........+..+++..+.+|.+.+.+..+.|.+..|.... +.. .+|+
T Consensus 209 g~~~~~~~~~~~~~vg~~~~~~---~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~v 279 (397)
T 3oz2_A 209 GYIWVFPKGEGMANVGIGSSIN---WIHNRFELKNYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMPIT------MPGL 279 (397)
T ss_dssp EEEEEEEEETTEEEEEEEEETT---TSCSHHHHHHHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSCCE------ETTE
T ss_pred ceEEEeecccceeEEEEeeccc---hhhhhhhHHHHHHHHHHhCccccccceeeeeeccccccCccccee------eeeE
Confidence 4567788888777666443322 2223445566666667777877778888889988887653 221 2355
Q ss_pred EEE-------eccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 104 IHN-------YGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 104 ~~~-------~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
+++ .-+.|.|+.+|...|..+|+.+...+.
T Consensus 280 ~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~ 316 (397)
T 3oz2_A 280 MLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIE 316 (397)
T ss_dssp EECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 443 235789999999999999988876553
No 23
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=91.52 E-value=0.7 Score=35.86 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCc--eeeeeEeeec-CCCC-c-eee---Eee-eCcceEEEEec-cCCCccchhHHHHH
Q psy5260 53 ISRHDTASILERCYSLLPRLEEAP--VLYEWCGLRP-HRSL-V-RVE---IEQ-IGRLKVIHNYG-HGGYGVTTAPGTSR 122 (142)
Q Consensus 53 ~~~~~~~~l~~~~~~~~P~l~~~~--v~~~w~G~Rp-~t~D-p-~ig---~~~-~~~~~l~~~~G-~gg~G~t~ap~~a~ 122 (142)
.+++..+.+++.+.+++|...+.. .+..|..-.| ++++ + .+. ... ...+|||++.. +.|.|+.-|...|+
T Consensus 379 ~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv~~a~~sG~ 458 (470)
T 3i6d_A 379 SDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGK 458 (470)
T ss_dssp CHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCHHHHHHHHH
Confidence 345677889999999998644333 5778987665 4555 1 111 100 01368999887 67888888999999
Q ss_pred HHHHHHHhhc
Q psy5260 123 YAVQLVKQAL 132 (142)
Q Consensus 123 ~la~~i~g~~ 132 (142)
.+|+.|...+
T Consensus 459 ~aA~~i~~~l 468 (470)
T 3i6d_A 459 AAVSDALTYL 468 (470)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998776
No 24
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=90.49 E-value=0.09 Score=40.59 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=54.0
Q ss_pred CCeEEEEEccCCeEEEccceecCCCCC-CCCHHHHHHHHHHHHhhCCCC----CCCceeeeeEeeecC-------CCC--
Q psy5260 25 DYDVYIIPHSNGAVTLGGCRHYDSYSR-DISRHDTASILERCYSLLPRL----EEAPVLYEWCGLRPH-------RSL-- 90 (142)
Q Consensus 25 ~~~~y~~p~~~g~~~iG~t~~~~~~~~-~~~~~~~~~l~~~~~~~~P~l----~~~~v~~~w~G~Rp~-------t~D-- 90 (142)
.+..|+.|..+|+..+|-.......+. ..+ .++.++...+.+|.+ .+.+....|..+... ..|
T Consensus 214 ~g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~---~~~~l~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 290 (421)
T 3nix_A 214 KVWIWVIPFSNGNTSVGFVGEPSYFDEYTGT---PEERMRAMIANEGHIAERFKSEEFLFEPRTIEGYAISASKLYGDGF 290 (421)
T ss_dssp TEEEEEEECTTSEEEEEEEECHHHHTTSCSC---HHHHHHHHHHTCTTTHHHHTTCCBSSCCEEEECCCBEESCSEETTE
T ss_pred CEEEEEEEECCCCEEEEEEecHHHhhhcCCC---HHHHHHHHHHhCcHHHHHHhcCccccCceeecccceeeeeeccCCE
Confidence 346788899998887776554321111 112 223333444445543 233332222222221 112
Q ss_pred ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 91 VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 91 p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
+.+|- -......+.|.|+++|...|..+|+.|...+.
T Consensus 291 ~lvGD------Aa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~ 327 (421)
T 3nix_A 291 VLTGN------ATEFLDPIFSSGATFAMESGSKGGKLAVQFLK 327 (421)
T ss_dssp EECGG------GTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecc------cccccCCcccccHHHHHHHHHHHHHHHHHHhc
Confidence 23331 11223456899999999999999999987764
No 25
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=89.88 E-value=0.69 Score=36.85 Aligned_cols=94 Identities=13% Similarity=-0.061 Sum_probs=59.6
Q ss_pred CCeEEEEEccCCeEEEccceecCCCCCCCCHHH-HHHHHHHHHhhCCCCCCCceeeeeEeeecCCC-C--ceeeEeeeCc
Q psy5260 25 DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHD-TASILERCYSLLPRLEEAPVLYEWCGLRPHRS-L--VRVEIEQIGR 100 (142)
Q Consensus 25 ~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~-~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~-D--p~ig~~~~~~ 100 (142)
++..|+.|..+ +..+|-..... ..+++. .+.+.+.+ ...|.+.+...+..|.|.++... + ..||-.
T Consensus 277 ~g~~~~~P~~~-~~~~g~~~~~~----~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~rv~liGDA---- 346 (511)
T 2weu_A 277 AGWMWTIPLFK-RDGNGYVYSDE----FISPEEAERELRSTV-APGRDDLEANHIQMRIGRNERTWINNCVAVGLS---- 346 (511)
T ss_dssp TEEEEEEECSS-EEEEEEEECTT----TSCHHHHHHHHHHHH-CTTCTTSCCEEEECCCEEESCSEETTEEECGGG----
T ss_pred CCcEEEEECCC-ceEEEEEECCC----CCCHHHHHHHHHHHh-CcccccccceeEEeeccccccccCCCEEEEech----
Confidence 45678889877 66666544321 123333 34444433 44555666777888899887654 4 445521
Q ss_pred ceEEEEeccCCCccchhHHHHHHHHHHHHh
Q psy5260 101 LKVIHNYGHGGYGVTTAPGTSRYAVQLVKQ 130 (142)
Q Consensus 101 ~~l~~~~G~gg~G~t~ap~~a~~la~~i~g 130 (142)
-....-+.|.|+.+|...|..+|+.+.+
T Consensus 347 --Ah~~~P~~g~G~~~a~~da~~La~~l~~ 374 (511)
T 2weu_A 347 --AAFVEPLESTGIFFIQHAIEQLVKHFPG 374 (511)
T ss_dssp --TEECCGGGCCHHHHHHHHHHHHHHTCCC
T ss_pred --hhccCccccccHHHHHHHHHHHHHHhcc
Confidence 1233467899999999999999998753
No 26
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=85.14 E-value=0.53 Score=36.94 Aligned_cols=83 Identities=11% Similarity=-0.036 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCc--eeeeeEeeec-CCCC--ceeeE---eeeCcceEEEEecc-CCCccchhHHHHHHH
Q psy5260 54 SRHDTASILERCYSLLPRLEEAP--VLYEWCGLRP-HRSL--VRVEI---EQIGRLKVIHNYGH-GGYGVTTAPGTSRYA 124 (142)
Q Consensus 54 ~~~~~~~l~~~~~~~~P~l~~~~--v~~~w~G~Rp-~t~D--p~ig~---~~~~~~~l~~~~G~-gg~G~t~ap~~a~~l 124 (142)
+++..+.+++.+.+++|...+.. ....|.+-.| ++++ ..+.. .....+|||++..+ .|.|+.-|...|+.+
T Consensus 386 ~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~gA~~SG~~a 465 (478)
T 2ivd_A 386 EDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGLNDCIRNAAQL 465 (478)
T ss_dssp HHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHHH
Confidence 45667888999999998653322 3567877665 4455 21110 10113689999877 477888888999999
Q ss_pred HHHHHhhcCCCC
Q psy5260 125 VQLVKQALDPTS 136 (142)
Q Consensus 125 a~~i~g~~~~~~ 136 (142)
|+.|.+.+.+++
T Consensus 466 A~~i~~~l~~~~ 477 (478)
T 2ivd_A 466 ADALVAGNTSHA 477 (478)
T ss_dssp HHHHCC------
T ss_pred HHHHHHhhccCC
Confidence 999988876543
No 27
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=84.08 E-value=1.2 Score=34.18 Aligned_cols=75 Identities=12% Similarity=-0.006 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhCCCCC-CCceeeeeEeeecCCC-C--ceeeEeeeCcceEEEEeccC----CCccchhHHHHHHHHH
Q psy5260 55 RHDTASILERCYSLLPRLE-EAPVLYEWCGLRPHRS-L--VRVEIEQIGRLKVIHNYGHG----GYGVTTAPGTSRYAVQ 126 (142)
Q Consensus 55 ~~~~~~l~~~~~~~~P~l~-~~~v~~~w~G~Rp~t~-D--p~ig~~~~~~~~l~~~~G~g----g~G~t~ap~~a~~la~ 126 (142)
++..+.+++.+.+++|... +...+..|-+-.|... . .+.... ...+|||++..+- |.|+--+.+.|+..++
T Consensus 343 ~~~~~~~~~~l~~~~p~~~~~~~~v~~~~~~~P~~~~~~~~~~~~~-~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~ 421 (425)
T 3ka7_A 343 ESEIEMGLEDLKEIFPGKRYEVLLIQSYHDEWPVNRAASGTDPGNE-TPFSGLYVVGDGAKGKGGIEVEGVALGVMSVME 421 (425)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEEEEEEBTTBCSBSSCTTCCCCSB-CSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEEEECCCccccccccCCCCCCC-CCcCCeEEeCCccCCCCCCccHHHHHHHHHHHH
Confidence 3557889999999999742 2234556665555432 2 222221 1246999997653 6778888888999998
Q ss_pred HHHh
Q psy5260 127 LVKQ 130 (142)
Q Consensus 127 ~i~g 130 (142)
.|.|
T Consensus 422 ~i~~ 425 (425)
T 3ka7_A 422 KVLG 425 (425)
T ss_dssp C---
T ss_pred HhhC
Confidence 8865
No 28
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=81.99 E-value=4.5 Score=33.09 Aligned_cols=99 Identities=13% Similarity=-0.015 Sum_probs=54.8
Q ss_pred eEEEEEcc--CCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCC----CCCceeeeeEeeecCCCC--ceeeEeee
Q psy5260 27 DVYIIPHS--NGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRL----EEAPVLYEWCGLRPHRSL--VRVEIEQI 98 (142)
Q Consensus 27 ~~y~~p~~--~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l----~~~~v~~~w~G~Rp~t~D--p~ig~~~~ 98 (142)
+.|+.|.. ++.+.+|.....+..+...++ .+.+.+. .. .|.+ ++.+ ..|.+.|+..++ +.+...
T Consensus 273 g~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~--~~~l~~~-~~-~p~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~-- 344 (584)
T 2gmh_A 273 GSFLYHLNEGEPLLALGFVVGLDYQNPYLSP--FREFQRW-KH-HPSIKPTLEGGK--RIAYGARALNEGGFQSIPKL-- 344 (584)
T ss_dssp EEEEEECCSSSCEEEEEEEEETTCCCTTCCH--HHHHHHH-TT-STTTHHHHTTCE--EEEEEEEEEECCGGGGCCCC--
T ss_pred ceEEEEecCCCCeEEEEEEEecCcccccCCh--HHHHHHH-Hh-ChHHHHHhCCCe--EEEecceEccCCCcccCCcc--
Confidence 35677777 778888876654332222222 1222221 11 2322 2233 235566665543 222211
Q ss_pred CcceEEEE-------eccCCCccchhHHHHHHHHHHHHhhcC
Q psy5260 99 GRLKVIHN-------YGHGGYGVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 99 ~~~~l~~~-------~G~gg~G~t~ap~~a~~la~~i~g~~~ 133 (142)
..++++++ .-+.|.|+.+|...|..+|+.|...+.
T Consensus 345 ~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~ 386 (584)
T 2gmh_A 345 TFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLT 386 (584)
T ss_dssp EETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 12455554 345799999999999999999987664
No 29
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=81.96 E-value=2.3 Score=33.26 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCCC--CceeeeeEeeec-CCCC-c-e---eeEee-eCcceEEEEe-ccCCCccchhHHHHH
Q psy5260 53 ISRHDTASILERCYSLLPRLEE--APVLYEWCGLRP-HRSL-V-R---VEIEQ-IGRLKVIHNY-GHGGYGVTTAPGTSR 122 (142)
Q Consensus 53 ~~~~~~~~l~~~~~~~~P~l~~--~~v~~~w~G~Rp-~t~D-p-~---ig~~~-~~~~~l~~~~-G~gg~G~t~ap~~a~ 122 (142)
.+++..+.+++.+.++++.-.+ ...+..|..-.| ++++ + . +.... ...+|||++. .+.+.|+.-|...|+
T Consensus 376 ~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~a~~sG~ 455 (475)
T 3lov_A 376 SDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVASAK 455 (475)
T ss_dssp CHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHH
Confidence 3456778889999999875322 224678887666 4555 1 1 11100 0136899887 577789999999999
Q ss_pred HHHHHHHhhcCC
Q psy5260 123 YAVQLVKQALDP 134 (142)
Q Consensus 123 ~la~~i~g~~~~ 134 (142)
.+|+.|.+.++.
T Consensus 456 ~aA~~i~~~l~~ 467 (475)
T 3lov_A 456 TMIESIELEQSH 467 (475)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHhhc
Confidence 999999998865
No 30
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=71.48 E-value=2.8 Score=32.67 Aligned_cols=78 Identities=15% Similarity=-0.034 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCC---CceeeeeEeeecCCCC--ceeeEe---ee-CcceEEEEec-cCCCccchhHHHHHH
Q psy5260 54 SRHDTASILERCYSLLPRLEE---APVLYEWCGLRPHRSL--VRVEIE---QI-GRLKVIHNYG-HGGYGVTTAPGTSRY 123 (142)
Q Consensus 54 ~~~~~~~l~~~~~~~~P~l~~---~~v~~~w~G~Rp~t~D--p~ig~~---~~-~~~~l~~~~G-~gg~G~t~ap~~a~~ 123 (142)
+++..+.+++.+.++++...+ ..+.+.+-++-.++++ +.++.. .. ..++|+++.. +.|.|+--+...|+.
T Consensus 386 ~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv~~a~~sg~~ 465 (477)
T 3nks_A 386 QELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQ 465 (477)
T ss_dssp HHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcHHHHHHHHHH
Confidence 345567777888887753222 2333334455556666 333221 00 1257888765 678899999999999
Q ss_pred HHHHHHhh
Q psy5260 124 AVQLVKQA 131 (142)
Q Consensus 124 la~~i~g~ 131 (142)
+|+.|.+.
T Consensus 466 aA~~il~~ 473 (477)
T 3nks_A 466 AAVSVLGT 473 (477)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999875
No 31
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=63.55 E-value=4.7 Score=33.16 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=57.1
Q ss_pred eCCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCC----------CCCCceeeeeEeeecCC-CC--
Q psy5260 24 LDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPR----------LEEAPVLYEWCGLRPHR-SL-- 90 (142)
Q Consensus 24 ~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~----------l~~~~v~~~w~G~Rp~t-~D-- 90 (142)
.++..|+.|..++.+.++-+....... .......+.+.+.+.+.+|. .........|.+.+... .+
T Consensus 232 ~~G~~w~iPl~~~~~sv~~~~~~~~~~-~l~~~~~~~~~~~l~~~~p~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv 310 (591)
T 3i3l_A 232 EDGWVWMIPIKDDLYSVGLVVDRSKSA-EVREQGADAFYSSTLAKCAKAMDILGGAEQVDEVRIVQDWSYDTEVFSADRF 310 (591)
T ss_dssp TTEEEEEEECSSSEEEEEEEEEGGGHH-HHHHHCHHHHHHHHHTTCHHHHHHHTTCEECSCCEEEEEEEEEESCSEETTE
T ss_pred CCcEEEEEECCCCeEEEEEEcCHHHHh-hhccCCHHHHHHHHHHhCHHHHHHHhcCccccCceEecccccchhhcccCCE
Confidence 455678899888877776554432111 00011123344444333332 12345667787744322 23
Q ss_pred ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhc
Q psy5260 91 VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 132 (142)
Q Consensus 91 p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~ 132 (142)
..||- -......+.|.|+.+|...|..+|+.|...+
T Consensus 311 vLIGD------AAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l 346 (591)
T 3i3l_A 311 FLCGD------AACFTDPLFSQGVHLASQSAVSAAAAIDRIT 346 (591)
T ss_dssp EECGG------GTCBCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcc------ccccCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 34442 1122345678999999999999999887654
No 32
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=62.15 E-value=21 Score=28.70 Aligned_cols=94 Identities=11% Similarity=-0.036 Sum_probs=50.6
Q ss_pred CCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCC-C--ceeeEeeeCcc
Q psy5260 25 DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRS-L--VRVEIEQIGRL 101 (142)
Q Consensus 25 ~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~-D--p~ig~~~~~~~ 101 (142)
++..|+.|..+ +..+|-.... ...+++...+.+++.....|.+.+.+.+..+.+.++... + ..||-
T Consensus 300 ~g~~~~ipl~~-~~~~g~v~~~----~~~~~~~~~~~l~~~~~~~p~l~~~~~i~~~~~~~~~~~~~rvvliGD------ 368 (550)
T 2e4g_A 300 SGWTWKIPMLG-RFGTGYVYSS----RFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGT------ 368 (550)
T ss_dssp SEEEEEEECSS-EEEEEEEECT----TTSCHHHHHHHHHHHTTCCTTTSCCEEEECCCEEESCSEETTEEECST------
T ss_pred CceEEEccCCC-ccceEEEEec----CCCChHHHHHHHHHhhCcCcccCCCceEEecCCCccccccCCEEEEeh------
Confidence 34567888766 5555544421 112333333333333233454555556666666665332 2 22331
Q ss_pred eEEEEeccCCCccchhHHHHHHHHHHHH
Q psy5260 102 KVIHNYGHGGYGVTTAPGTSRYAVQLVK 129 (142)
Q Consensus 102 ~l~~~~G~gg~G~t~ap~~a~~la~~i~ 129 (142)
--....-+.|.|+.++...|..+|+.+.
T Consensus 369 AAh~~~P~~GqGi~~a~~da~~La~~L~ 396 (550)
T 2e4g_A 369 SSCFVEPLESTGIYFVYAALYQLVKHFP 396 (550)
T ss_dssp TTEECCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hhcccCccchhhHHHHHHHHHHHHHhcc
Confidence 0112223578999999999999998775
No 33
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=57.07 E-value=34 Score=25.14 Aligned_cols=77 Identities=8% Similarity=0.075 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCC--ceeeeeEeeecCCC--C-c-eeeEeeeCcceEEEEe-ccCCCccchhHHHHHHHH
Q psy5260 53 ISRHDTASILERCYSLLPRLEEA--PVLYEWCGLRPHRS--L-V-RVEIEQIGRLKVIHNY-GHGGYGVTTAPGTSRYAV 125 (142)
Q Consensus 53 ~~~~~~~~l~~~~~~~~P~l~~~--~v~~~w~G~Rp~t~--D-p-~ig~~~~~~~~l~~~~-G~gg~G~t~ap~~a~~la 125 (142)
.+++..+.+++.+.++++...+. ..+..|..-.|... + | .+.. ...++|+++. .+.|-|+--+...|+.+|
T Consensus 258 ~~~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~~~~~~~~--~~~~~l~laGd~~~g~~v~~ai~sg~~aa 335 (342)
T 3qj4_A 258 SIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANCPGQMTL--HHKPFLACGGDGFTQSNFDGCITSALCVL 335 (342)
T ss_dssp CHHHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCSSSCSCEEE--ETTTEEEECSGGGSCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCCceeeeccccccccccccCCCcceeEe--cCCccEEEEccccCCCCccHHHHHHHHHH
Confidence 34567788999999999854332 24677865555432 2 1 1111 2357888876 456778888999999999
Q ss_pred HHHHhh
Q psy5260 126 QLVKQA 131 (142)
Q Consensus 126 ~~i~g~ 131 (142)
+.|...
T Consensus 336 ~~i~~~ 341 (342)
T 3qj4_A 336 EALKNY 341 (342)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 988654
No 34
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=56.67 E-value=33 Score=22.95 Aligned_cols=54 Identities=15% Similarity=-0.054 Sum_probs=36.9
Q ss_pred eeeeEeeecCCCC--ceeeEeeeCcceEEEEe-ccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260 78 LYEWCGLRPHRSL--VRVEIEQIGRLKVIHNY-GHGGYGVTTAPGTSRYAVQLVKQALDP 134 (142)
Q Consensus 78 ~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~-G~gg~G~t~ap~~a~~la~~i~g~~~~ 134 (142)
...|---+|..+. +.. . ...+++|++- ...|.|+..|...|+.+|+.|...|++
T Consensus 273 ~~~w~~a~~~~~~~~~~~-~--~~~~~v~l~GDa~~g~gv~~A~~sG~~aA~~I~~~L~~ 329 (336)
T 3kkj_A 273 AHRWLYARPAGAHEWGAL-S--DADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp EEEEEEEEESSCCCCSSE-E--ETTTTEEECCGGGTTSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccceeecccccccCccce-e--eCCCCEEEEecccCCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 4456555665542 211 1 1356888763 256789999999999999999999863
No 35
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=48.88 E-value=16 Score=27.77 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=19.9
Q ss_pred ccCCCccchhHHHHHHHHHHHHh
Q psy5260 108 GHGGYGVTTAPGTSRYAVQLVKQ 130 (142)
Q Consensus 108 G~gg~G~t~ap~~a~~la~~i~g 130 (142)
-+.|.|+.+|.--|..+++.|..
T Consensus 315 P~~GqG~~~al~da~~La~~L~~ 337 (407)
T 3rp8_A 315 PDIGQGGCAAMEDAVVLGAVFRQ 337 (407)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhhHHHHHHHHHHHHHHHhc
Confidence 45789999999999999998864
No 36
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=47.50 E-value=39 Score=26.88 Aligned_cols=92 Identities=14% Similarity=-0.074 Sum_probs=50.0
Q ss_pred CCeEEEEEccCCeEEEccceecCCCCCCCCHH-HHHHHHHHHHhhCCCCCCCceeeeeEeeecCCC-C--ceeeEeeeCc
Q psy5260 25 DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRH-DTASILERCYSLLPRLEEAPVLYEWCGLRPHRS-L--VRVEIEQIGR 100 (142)
Q Consensus 25 ~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~-~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~-D--p~ig~~~~~~ 100 (142)
++..|+.|..+ +..+|-.+.. + ..+++ ..+.+.+.+.. .| +.+.+.+..|.+.++... + ..+|
T Consensus 270 ~g~~~~~p~~~-~~~~g~v~~~---~-~~~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~grvvliG------ 336 (538)
T 2aqj_A 270 SGWTWKIPMLG-RFGSGYVFSS---H-FTSRDQATADFLKLWGL-SD-NQPLNQIKFRVGRNKRAWVNNCVSIG------ 336 (538)
T ss_dssp SEEEEEEEETT-EEEEEEEECT---T-TSCHHHHHHHHHHHHTC-CT-TCCCEEEECCCEEESCSEETTEEECG------
T ss_pred CceEEEecCCC-ceEEEEEEcC---C-CCChHHHHHHHHHHhcC-CC-CCCceEEeeccccccccccCCEEEEc------
Confidence 34678888876 4555544331 1 12333 33344333322 22 334555666666655322 2 2222
Q ss_pred ceEEEEeccCCCccchhHHHHHHHHHHHH
Q psy5260 101 LKVIHNYGHGGYGVTTAPGTSRYAVQLVK 129 (142)
Q Consensus 101 ~~l~~~~G~gg~G~t~ap~~a~~la~~i~ 129 (142)
+--....-+.|.|+.+|...|..+|+.+.
T Consensus 337 DAAh~~~P~~gqG~~~a~~da~~La~~L~ 365 (538)
T 2aqj_A 337 LSSCFLEPLESTGIYFIYAALYQLVKHFP 365 (538)
T ss_dssp GGTEECCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred ccccccCcchhccHHHHHHHHHHHHHHhh
Confidence 11233355689999999999999998775
No 37
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=45.66 E-value=0.28 Score=39.74 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCCCCCceeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccc
Q psy5260 59 ASILERCYSLLPRLEEAPVLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVT 115 (142)
Q Consensus 59 ~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t 115 (142)
+.+.+.+.+.+|.+... +.+.|+|+ |+++| |+++.++....+++...++.+ |+.
T Consensus 232 ~~~~~~~~~~~p~l~~~-~~~~~~G~-~~~~d~~~~~~~~~~~~~~~~~~~~~~g-g~~ 287 (542)
T 1w4x_A 232 PEFLADLKKRYAEFREE-SRNTPGGT-HRYQGPKSALEVSDEELVETLERYWQEG-GPD 287 (542)
T ss_dssp HHHHHHHHTTHHHHHHH-HHTSSSSS-CCCCCCSCTTTSCHHHHHHHHHHHHHHC-SGG
T ss_pred HHHHHHHHhhCHHHHHH-HHhhcccc-ccCccccchhcCCHHHHHHHHHHHHhhc-chH
Confidence 45555666677776555 56789999 99998 777754211234555444433 443
No 38
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=45.20 E-value=11 Score=29.38 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=24.9
Q ss_pred cceEEEEec--cCCCccchhHHHHHHHHHHHHhhcCCCCc
Q psy5260 100 RLKVIHNYG--HGGYGVTTAPGTSRYAVQLVKQALDPTSS 137 (142)
Q Consensus 100 ~~~l~~~~G--~gg~G~t~ap~~a~~la~~i~g~~~~~~~ 137 (142)
.+|||++.. |-|.|+..+...|+..|+.|+..|--|+.
T Consensus 457 i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~gG~~ 496 (501)
T 4dgk_A 457 ITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDLIGGSH 496 (501)
T ss_dssp CTTEEECCCH------HHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 479998864 43678998999999999999888755554
No 39
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=41.80 E-value=74 Score=21.08 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=35.8
Q ss_pred eeecCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 83 GLRPHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 83 G~Rp~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
+.-|..-| -.+... . .++.+.-..|.+.|-..|-+.+.++++++.|+
T Consensus 36 ~~np~CGD~i~l~lk-v-~~~~I~d~~f~~~GCais~ASaS~mte~v~Gk 83 (147)
T 1xjs_A 36 MNNPTCGDRIRLTMK-L-DGDIVEDAKFEGEGCSISMASASMMTQAIKGK 83 (147)
T ss_dssp EEETTTTEEEEEEEE-C-CSSBCCEEEEEEESSHHHHHHHHHHHHHHTTS
T ss_pred ecCCCCCCEEEEEEE-E-CCCeEEEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 34566666 333322 1 35788899999999999999999999999887
No 40
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=41.79 E-value=29 Score=22.87 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=36.2
Q ss_pred eeecCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 83 GLRPHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 83 G~Rp~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
+.-|..-| -.+.... ..+.+.-..|.+.|-..|-+.+.++++++.|+
T Consensus 34 ~~np~CGD~i~l~l~v--~~~~I~d~~f~~~GCais~ASaS~~te~i~Gk 81 (138)
T 2qq4_A 34 GMNPSCGDQVEVMVLL--EGDTIADIRFQGQGCAISTASASLMTEAVKGK 81 (138)
T ss_dssp EECTTTCCEEEEEEEE--ETTEEEEEEEEEECCHHHHHHHHHHHHHHTTS
T ss_pred eCCCCCCCEEEEEEEE--CCCEEEEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 34566667 3333222 35789999999999999999999999999887
No 41
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=38.42 E-value=30 Score=23.45 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=36.0
Q ss_pred eeecCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 83 GLRPHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 83 G~Rp~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
+.-|..-| -.+.... .++.+.-..|.+.|-..+-+.+.++++++.|+
T Consensus 35 ~~np~CGD~i~l~lkv--~~g~I~d~~F~~~GCais~ASaS~mte~v~Gk 82 (159)
T 1su0_B 35 LNNPTCGDVISLTVKF--DEDKIEDIAFAGNGCTISTASSSMMTDAVIGK 82 (159)
T ss_dssp EECSSSCCEEEEEEEE--SSSSEEEEEEEEECCHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCEEEEEEEE--CCCEEEEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 34566667 3333222 35789999999999999999999999999887
No 42
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=37.97 E-value=34 Score=23.12 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=36.4
Q ss_pred EeeecCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 82 CGLRPHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 82 ~G~Rp~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
.+.-|..-| -.+.... ..+.+.-..|.+.|-..|-+++.++++++.|+
T Consensus 27 ~~~nP~CGD~i~l~lkv--~d~~I~D~~F~g~GCais~ASaS~mtelv~GK 75 (153)
T 4eb5_C 27 TVGNPVCGDLMTIYIKV--KDNRIEDIKFQTFGCAAAIATSSMATEMAKGK 75 (153)
T ss_dssp EEECTTTCCEEEEEEEE--SSSBEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCEEEEEEEe--cCCeEEEEEEEEeCcHHHHHHHHHHHHHHcCC
Confidence 344555667 3233222 35789999999999999999999999999987
No 43
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=37.48 E-value=36 Score=22.12 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=35.7
Q ss_pred eecCCCC-ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 84 LRPHRSL-VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 84 ~Rp~t~D-p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
.-|..-| -.+... .+..+.+.-..|.+.|-..+-+.+.++++++.|+
T Consensus 34 ~np~CGD~i~l~l~-v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gk 81 (129)
T 3lvl_A 34 GAPACGDVMKLQIK-VNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGK 81 (129)
T ss_dssp ECTTTCCEEEEEEE-ECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCEEEEEEE-ECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 4566667 323322 2223789999999999999999999999999987
No 44
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=35.41 E-value=70 Score=24.15 Aligned_cols=73 Identities=12% Similarity=-0.011 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCceeeeeEeeecCCCC-c--eeeEeeeCcceEEEEeccCC-C-cc--chhHHHHHHHHHHH
Q psy5260 56 HDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-V--RVEIEQIGRLKVIHNYGHGG-Y-GV--TTAPGTSRYAVQLV 128 (142)
Q Consensus 56 ~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~t~D-p--~ig~~~~~~~~l~~~~G~gg-~-G~--t~ap~~a~~la~~i 128 (142)
+..+.+++.+.+++|.. +...+++|..-+|.... + .+. . .. +|||++..+-. . |+ --+...|..+|+.|
T Consensus 328 ~~~~~~~~~L~~~~p~~-~~~~~~~~~~~~p~~~~~~~~~~~-~-~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 328 KAIEKGWEELLEIFPEG-EPLLAQVYRDGNPVNRTRAGLHIE-W-PL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp HHHHHHHHHHHHHCTTC-EEEEEEEC-------------CCC-C-CC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCC-eEEEeeeccCCCCcccccCCCCCC-C-CC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence 55788999999999932 23335667554444321 1 011 1 23 89999976532 2 34 67888899999988
Q ss_pred HhhcCC
Q psy5260 129 KQALDP 134 (142)
Q Consensus 129 ~g~~~~ 134 (142)
.+++
T Consensus 404 --~~~~ 407 (421)
T 3nrn_A 404 --NLGS 407 (421)
T ss_dssp --TSCC
T ss_pred --CcCc
Confidence 4444
No 45
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=33.11 E-value=23 Score=24.01 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=36.1
Q ss_pred eeecCCCC-ceeeEeeeC-cceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 83 GLRPHRSL-VRVEIEQIG-RLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 83 G~Rp~t~D-p~ig~~~~~-~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
+.-|..-| -.+... .+ ..+.+.-+.|.+.|-..+-+.+.++++++.|+
T Consensus 31 ~~np~CGD~i~l~lk-vd~~~g~I~d~~F~~~GCais~ASaS~mte~v~Gk 80 (157)
T 2z7e_A 31 CGNPACGAAMLFTIK-VNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGK 80 (157)
T ss_dssp EEETTTTEEEEEEEE-ECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHTTS
T ss_pred eCCCCCCCEEEEEEE-EecCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 34455666 333322 22 35799999999999999999999999999887
No 46
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=28.57 E-value=58 Score=26.38 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=19.5
Q ss_pred EeccCCCccchhHHHHHHHHHHHHhh
Q psy5260 106 NYGHGGYGVTTAPGTSRYAVQLVKQA 131 (142)
Q Consensus 106 ~~G~gg~G~t~ap~~a~~la~~i~g~ 131 (142)
..-++|.|+.++..-|..+++.|...
T Consensus 334 ~~P~~GqG~n~gl~DA~~La~~La~~ 359 (570)
T 3fmw_A 334 HFPIGGQGLNTGLQDAVNLGWKLAAR 359 (570)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCcCHhHHHHHHHHHHHHHHHH
Confidence 34567899999888888888777554
No 47
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.27 E-value=69 Score=18.78 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCC
Q psy5260 52 DISRHDTASILERCYSLLPRLEE 74 (142)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~P~l~~ 74 (142)
.++...++..+...+++||++.+
T Consensus 7 ~~~~~~l~s~I~qV~DLfPdLG~ 29 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPDLGE 29 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCSSCH
T ss_pred CCcHHHHHHHHHHHHHHcccCCH
Confidence 45667888999999999999853
No 48
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=23.68 E-value=93 Score=24.08 Aligned_cols=83 Identities=17% Similarity=0.070 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCC--CceeeeeEeeec-CCCC---ce--eeEeeeCcceEEEEeccC-CCccchhHHHHHH
Q psy5260 53 ISRHDTASILERCYSLLPRLEE--APVLYEWCGLRP-HRSL---VR--VEIEQIGRLKVIHNYGHG-GYGVTTAPGTSRY 123 (142)
Q Consensus 53 ~~~~~~~~l~~~~~~~~P~l~~--~~v~~~w~G~Rp-~t~D---p~--ig~~~~~~~~l~~~~G~g-g~G~t~ap~~a~~ 123 (142)
.+++..+.+++.+.++++.-.+ .-....|.--.| +++. .+ +.......+|||++.-+. |.|+.-|...|..
T Consensus 405 ~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~v~gai~sG~~ 484 (504)
T 1sez_A 405 SRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCN 484 (504)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCCCCCHHHHHHHHHH
Confidence 3456678888899999875221 123456754444 3333 11 111000136888887653 3456667788999
Q ss_pred HHHHHHhhcCCC
Q psy5260 124 AVQLVKQALDPT 135 (142)
Q Consensus 124 la~~i~g~~~~~ 135 (142)
.|+.|...+...
T Consensus 485 aA~~il~~l~~~ 496 (504)
T 1sez_A 485 AADLVISYLESV 496 (504)
T ss_dssp HHHHHHHHHSSC
T ss_pred HHHHHHHHHhhc
Confidence 999998887653
No 49
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=21.55 E-value=1.1e+02 Score=19.09 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCceeeeeE
Q psy5260 56 HDTASILERCYSLLPRLEEAPVLYEWC 82 (142)
Q Consensus 56 ~~~~~l~~~~~~~~P~l~~~~v~~~w~ 82 (142)
...++|.+...++||.+.+..+.-.|.
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~ 68 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYR 68 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEE
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEE
Confidence 467999999999999998766766664
No 50
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=20.47 E-value=98 Score=23.86 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCc----eeeee------Eeeec-CCCC------ceeeEeeeCcceEEEEeccCC---C-
Q psy5260 54 SRHDTASILERCYSLLPRLEEAP----VLYEW------CGLRP-HRSL------VRVEIEQIGRLKVIHNYGHGG---Y- 112 (142)
Q Consensus 54 ~~~~~~~l~~~~~~~~P~l~~~~----v~~~w------~G~Rp-~t~D------p~ig~~~~~~~~l~~~~G~gg---~- 112 (142)
+++..+.+++.+.+++|+....+ ....| .|-++ .+++ +.+..+ .++||+|.-+-. .
T Consensus 362 ~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p---~~~l~fAG~~t~~~~~g 438 (472)
T 1b37_A 362 DEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAP---VGRVYFTGEHTSEHYNG 438 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCC---BTTEEECSGGGCTTTTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhcc---CCcEEEeecccCCCCCC
Confidence 45677889999999998753111 22345 22222 1221 111111 358999876543 2
Q ss_pred ccchhHHHHHHHHHHHHhhcC
Q psy5260 113 GVTTAPGTSRYAVQLVKQALD 133 (142)
Q Consensus 113 G~t~ap~~a~~la~~i~g~~~ 133 (142)
++.-|...|+..|+.|...+.
T Consensus 439 ~v~GA~~SG~~aA~~i~~~l~ 459 (472)
T 1b37_A 439 YVHGAYLSGIDSAEILINCAQ 459 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 444555688999998887764
No 51
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=20.20 E-value=1.2e+02 Score=19.51 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCceeeeeE
Q psy5260 56 HDTASILERCYSLLPRLEEAPVLYEWC 82 (142)
Q Consensus 56 ~~~~~l~~~~~~~~P~l~~~~v~~~w~ 82 (142)
...+.|.+...++||.+.+..+.-.|.
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~Yk 83 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYR 83 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEE
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEE
Confidence 478999999999999998777776664
Done!