RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5260
         (142 letters)



>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp.
          [TaxId: 1409]}
          Length = 88

 Score = 63.5 bits (154), Expect = 6e-15
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
          +      L+   Y D   YI+P  +G + +G       +S         S++++  ++LP
Sbjct: 11 VWNDDIPLTKTLYHD-HCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLP 69

Query: 71 RLEEAPVLYEWCGLRP 86
           ++   V   W GLRP
Sbjct: 70 AIQNMKVDRFWAGLRP 85


>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula
          gracilis [TaxId: 5286]}
          Length = 95

 Score = 62.5 bits (151), Expect = 2e-14
 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 11 LQVWAPWLSHFYYL---DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYS 67
          + V +P               YIIP   G V  GG      +   ++      IL+ C  
Sbjct: 9  VLVKSPCKRCTMDSSDPASPAYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLR 68

Query: 68 LLPRL------EEAPVLYEWCGLRPHR 88
          L P +      E   VL    GLRP R
Sbjct: 69 LDPTISSDGTIEGIEVLRHNVGLRPAR 95


>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus
          scrofa) [TaxId: 9823]}
          Length = 93

 Score = 57.4 bits (138), Expect = 2e-12
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 11 LQVWAPWLSHFYY-------LDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILE 63
          ++V APWL +F         +    YIIP     VTLGG     +++   +  D  +I E
Sbjct: 9  IKVDAPWLKNFIITHDLERGIYNSPYIIPGLQA-VTLGGTFQVGNWNEINNIQDHNTIWE 67

Query: 64 RCYSLLPRLEEAPVLYEWCGLRPHR 88
           C  L P L++A ++ E+ G RP R
Sbjct: 68 GCCRLEPTLKDAKIVGEYTGFRPVR 92


>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
           domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 246

 Score = 58.7 bits (141), Expect = 6e-12
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 82  CGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133
             L+P    VR+E EQ+       +VIHNYGHGGYG+T   G +    +L  + L+
Sbjct: 187 GVLQPDPLQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLE 242


>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
           N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
          Length = 268

 Score = 56.2 bits (134), Expect = 7e-11
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 74  EAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 133
             P+      L   R   R   E    + ++H YG    G   + G +    QLV +A  
Sbjct: 207 VLPLDRTKSPLSLGRGSARAAKE--KEVTLVHAYGFSSAGYQQSWGAAEDVAQLVDEAFQ 264


>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId:
           1280]}
          Length = 173

 Score = 27.2 bits (60), Expect = 0.59
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 11  LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYS 50
           + +W PW + F   D    +IP SNG        HY  YS
Sbjct: 136 IIIWNPWDNGFMTQDAKNNVIPVSNG-------DHYQWYS 168


>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId:
           1280]}
          Length = 183

 Score = 26.8 bits (59), Expect = 0.86
 Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 7/40 (17%)

Query: 11  LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYS 50
           L  W PW +     D D  ++  S         R Y+ Y 
Sbjct: 146 LIYWNPWDTELSIQDADSSLLHLSFN-------RDYNWYG 178


>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
           olivochromogenes [TaxId: 1963]}
          Length = 386

 Score = 25.3 bits (55), Expect = 3.0
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 100 RLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDPTSSLKSKL 142
            L     +  GG+         RYA++   + +D    L +K 
Sbjct: 91  NLFTHPVFKDGGF-TANDRDVRRYALRKTIRNIDLAVELGAKT 132


>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK
           {Escherichia coli [TaxId: 562]}
          Length = 187

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 71  RLEEA--PVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTA 117
           RL EA   V++   GL+ H  L  +  ++ G +    + G G +   TA
Sbjct: 103 RLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTA 151


>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
           {Bacillus coagulans [TaxId: 1398]}
          Length = 356

 Score = 24.3 bits (52), Expect = 7.4
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 2/70 (2%)

Query: 42  GCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLV--RVEIEQIG 99
           G    D     +              LL  +      +    LRP + L+  R E+    
Sbjct: 44  GGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFA 103

Query: 100 RLKVIHNYGH 109
            L+ +  Y  
Sbjct: 104 NLRPVKAYAT 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.450 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 565,692
Number of extensions: 25087
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 13
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)