BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5261
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
Length = 351
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 33/285 (11%)
Query: 4 PVISVDASVQNEDGSRTL---TLSQTKFSADGSTGKAMISTYQT--SLLKNASIENLVPV 58
P +S + Q D S+ LS + G +IS Y + + S ++ V
Sbjct: 54 PYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLG 113
Query: 59 YRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLES 118
+R P EL + Y YG + +L++E ++L W +R++++G KF + V SF +
Sbjct: 114 FRKLTPRELDM-FPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAR 172
Query: 119 E-FDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAPWLSHFYYLDYD--------VYVIP 169
E D + NC G+ A AL RD L P RGQ++KV APW+ HF L +D Y+IP
Sbjct: 173 EGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHF-ILTHDPERGIYNSPYIIP 231
Query: 170 HSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHR---- 225
+ VTLGG ++S + D +I E C L P L+ A ++ E G RP R
Sbjct: 232 GTQ-TVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIR 290
Query: 226 ------------SLVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 258
+ VIHNYGHGGYG+T G + A +L + L+
Sbjct: 291 LEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILE 335
>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|G Chain G, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|J Chain J, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2E48|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E49|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E4A|A Chain A, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|B Chain B, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|C Chain C, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|D Chain D, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E82|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|3CUK|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
Length = 347
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 33/285 (11%)
Query: 4 PVISVDASVQNEDGSRTL---TLSQTKFSADGSTGKAMISTYQT--SLLKNASIENLVPV 58
P +S + Q D S+ LS + G +IS Y + + S ++ V
Sbjct: 54 PYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLG 113
Query: 59 YRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLES 118
+R P EL + Y YG + +L++E ++L W +R++++G KF + V SF +
Sbjct: 114 FRKLTPRELDM-FPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAR 172
Query: 119 E-FDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAPWLSHFYYLDYD--------VYVIP 169
E D + NC G+ A AL RD L P RGQ++KV APW+ HF L +D Y+IP
Sbjct: 173 EGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHF-ILTHDPERGIYNSPYIIP 231
Query: 170 HSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHR---- 225
+ VTLGG ++S + D +I E C L P L+ A ++ E G RP R
Sbjct: 232 GTQ-TVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIR 290
Query: 226 ------------SLVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 258
+ VIHNYGHGGYG+T G + A +L + L+
Sbjct: 291 LEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILE 335
>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1AN9|B Chain B, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1EVI|A Chain A, Three-Dimensional Structure Of The Purple Intermediate Of
Porcine Kidney D-Amino Acid Oxidase
pdb|1EVI|B Chain B, Three-Dimensional Structure Of The Purple Intermediate Of
Porcine Kidney D-Amino Acid Oxidase
Length = 340
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 129/260 (49%), Gaps = 47/260 (18%)
Query: 49 NASIENLVPV-----YRDAQPD----ELVVGNKT-----------YKYGSYSETLVIENS 88
NA+ L PV +R+A PD ++V+G + Y+YG ++ +L++E
Sbjct: 83 NAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGR 142
Query: 89 DFLPWAMKRVSKQGGKFRRGTVSSFSGL-ESEFDFVFNCAGLGAQALCRDRKLTPIRGQV 147
+L W +R++++G KF V SF + D + NC G+ A L D L P RGQ+
Sbjct: 143 KYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQI 202
Query: 148 IKVWAPWLSHFYYLDYDV--------YVIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 199
IKV APWL +F + +D+ Y+IP AVTLGG +++ + D +I
Sbjct: 203 IKVDAPWLKNF-IITHDLERGIYNSPYIIPGLQ-AVTLGGTFQVGNWNEINNIQDHNTIW 260
Query: 200 ERCYSLLPRLEEAPVLYEWCGLRPHR----------------SLVIHNYGHGGYGVTTAP 243
E C L P L++A ++ E+ G RP R + VIHNYGHGGYG+T
Sbjct: 261 EGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHW 320
Query: 244 GTSRYAVQLVKQALDPTSSL 263
G + +L + L+ + L
Sbjct: 321 GCALEVAKLFGKVLEERNLL 340
>pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|B Chain B, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|C Chain C, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|D Chain D, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|E Chain E, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|F Chain F, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|G Chain G, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|H Chain H, D-Amino Acid Oxidase From Pig Kidney
pdb|1DAO|A Chain A, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|B Chain B, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|C Chain C, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|D Chain D, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|E Chain E, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|F Chain F, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|G Chain G, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|H Chain H, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DDO|A Chain A, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|B Chain B, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|C Chain C, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|D Chain D, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|E Chain E, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|F Chain F, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|G Chain G, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|H Chain H, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1VE9|A Chain A, Porcine Kidney D-amino Acid Oxidase
pdb|1VE9|B Chain B, Porcine Kidney D-amino Acid Oxidase
Length = 347
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 129/260 (49%), Gaps = 47/260 (18%)
Query: 49 NASIENLVPV-----YRDAQPD----ELVVGNKT-----------YKYGSYSETLVIENS 88
NA+ L PV +R+A PD ++V+G + Y+YG ++ +L++E
Sbjct: 83 NAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGR 142
Query: 89 DFLPWAMKRVSKQGGKFRRGTVSSFSGL-ESEFDFVFNCAGLGAQALCRDRKLTPIRGQV 147
+L W +R++++G KF V SF + D + NC G+ A L D L P RGQ+
Sbjct: 143 KYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQI 202
Query: 148 IKVWAPWLSHFYYLDYDV--------YVIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 199
IKV APWL +F + +D+ Y+IP AVTLGG +++ + D +I
Sbjct: 203 IKVDAPWLKNF-IITHDLERGIYNSPYIIPGLQ-AVTLGGTFQVGNWNEINNIQDHNTIW 260
Query: 200 ERCYSLLPRLEEAPVLYEWCGLRPHR----------------SLVIHNYGHGGYGVTTAP 243
E C L P L++A ++ E+ G RP R + VIHNYGHGGYG+T
Sbjct: 261 EGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHW 320
Query: 244 GTSRYAVQLVKQALDPTSSL 263
G + +L + L+ + L
Sbjct: 321 GCALEVAKLFGKVLEERNLL 340
>pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes At
Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0P|A Chain A, D-amino Acic Oxidase In Complex With D-alanine And A
Partially Occupied Biatomic Species
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex With
Two Anthranylate Molecules
Length = 363
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 19/186 (10%)
Query: 53 ENLVPVYRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSS 112
+++ P YR E G Y +TL + + + + + K G F R TV+S
Sbjct: 111 KDITPNYRPLPSSECPPGAIGVTY----DTLSVHAPKYCQYLARELQKLGATFERRTVTS 166
Query: 113 FSGLESEFDFVFNCAGLGAQALC--RDRKLTPIRGQVIKVWAPWLSHFYYLDYD-----V 165
D V N GLGA+++ D+ PIRGQ + V +P +D
Sbjct: 167 LEQAFDGADLVVNATGLGAKSIAGIDDQAAEPIRGQTVLVKSP--CKRCTMDSSDPASPA 224
Query: 166 YVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP------RLEEAPVLYEWC 219
Y+IP G V GG + ++ IL+ C L P +E VL
Sbjct: 225 YIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNV 284
Query: 220 GLRPHR 225
GLRP R
Sbjct: 285 GLRPAR 290
>pdb|3IF9|A Chain A, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|B Chain B, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|C Chain C, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|D Chain D, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
Length = 382
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 14/141 (9%)
Query: 127 AGLGAQALCRDRKLTPIRGQVIKVWAPWLSHFYYLDYDV-YVIPHSNGAVTLGGCRHYDS 185
+G+ + L + P++G+ + VW + L +D Y++P +G + +G
Sbjct: 219 SGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDACYIVPRKSGRLVVGATMKPGD 278
Query: 186 YSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLR-------------PHRSLVIHNY 232
+S S++++ ++LP ++ V W GLR P S ++
Sbjct: 279 WSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAA 338
Query: 233 GHGGYGVTTAPGTSRYAVQLV 253
GH G+ AP T L+
Sbjct: 339 GHFRNGILLAPATGALISDLI 359
>pdb|1RYI|A Chain A, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|B Chain B, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|C Chain C, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|D Chain D, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
Length = 382
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 127 AGLGAQALCRDRKLTPIRGQVIKVW---APWLSHFYYLDYDVYVIPHSNGAVTLGGCRHY 183
+G+ + L + P++G+ + VW P L+ Y D+ Y++P +G + +G
Sbjct: 219 SGMFFKQLGLNNAFLPVKGECLSVWNDDIP-LTKTLYHDH-CYIVPRKSGRLVVGATMKP 276
Query: 184 DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLR-------------PHRSLVIH 230
+S S++++ ++LP ++ V W GLR P S ++
Sbjct: 277 GDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILF 336
Query: 231 NYGHGGYGVTTAPGTSRYAVQLV 253
GH G+ AP T L+
Sbjct: 337 AAGHFRNGILLAPATGALISDLI 359
>pdb|1NG3|A Chain A, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG3|B Chain B, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG4|A Chain A, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
pdb|1NG4|B Chain B, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
Length = 390
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 127 AGLGAQALCRDRKLTPIRGQVIKVW---APWLSHFYYLDYDVYVIPHSNGAVTLGGCRHY 183
+G+ + L + P++G+ + VW P L+ Y D+ Y++P +G + +G
Sbjct: 227 SGMFFKQLGLNNAFLPVKGECLSVWNDDIP-LTKTLYHDH-CYIVPRKSGRLVVGATMKP 284
Query: 184 DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLR-------------PHRSLVIH 230
+S S++++ ++LP ++ V W GLR P S ++
Sbjct: 285 GDWSETPDLGGLESVMKKAKTMLPPIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILF 344
Query: 231 NYGHGGYGVTTAPGTSRYAVQLV 253
GH G+ AP T L+
Sbjct: 345 AAGHFRNGILLAPATGALISDLI 367
>pdb|1CV8|A Chain A, Staphopain, Cysteine Proteinase From Staphylococcus Aureus
V8
Length = 174
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 131 AQALCRDRKLTPIRGQVIKVWAPWLSHFYYLDYDVYVIPHSNGAVTLGGCRHYDSYS 187
A A+ + KL + +VI +W PW + F D VIP SNG HY YS
Sbjct: 121 AMAVVGNAKLNNGQ-EVIIIWNPWDNGFMTQDAKNNVIPVSNG-------DHYQWYS 169
>pdb|4FTD|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03550)
From Bacteroides Eggerthii Dsm 20697 At 1.91 A
Resolution
Length = 453
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 89 DFLPWAMKRVSKQGGKFRRGTVSSFSGLESEFDFVFN---CAGL-GAQALCRDRKLTP 142
D+L KRV G F + TV +FSG DF N CA G L R TP
Sbjct: 100 DYLXKVRKRVPVFGADFEKPTVYNFSGDNIYSDFATNYTRCASYDGEHVLVVSRPTTP 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,263,048
Number of Sequences: 62578
Number of extensions: 339651
Number of successful extensions: 698
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 11
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)