Query psy5261
Match_columns 267
No_of_seqs 252 out of 1803
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 21:52:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3923|consensus 100.0 2.1E-40 4.5E-45 278.9 20.6 230 29-259 87-339 (342)
2 TIGR02352 thiamin_ThiO glycine 100.0 6.4E-31 1.4E-35 234.0 18.7 217 38-255 72-335 (337)
3 PRK00711 D-amino acid dehydrog 100.0 4.9E-28 1.1E-32 221.9 18.9 230 29-258 121-404 (416)
4 PRK12409 D-amino acid dehydrog 99.9 3.9E-27 8.4E-32 215.8 16.1 227 29-257 120-407 (410)
5 TIGR03197 MnmC_Cterm tRNA U-34 99.9 2.8E-27 6.2E-32 214.8 14.5 216 38-256 72-362 (381)
6 TIGR01373 soxB sarcosine oxida 99.9 2.8E-26 6.2E-31 209.9 18.8 219 38-256 112-385 (407)
7 TIGR03329 Phn_aa_oxid putative 99.9 8.6E-26 1.9E-30 209.9 18.2 206 51-256 142-394 (460)
8 PRK11259 solA N-methyltryptoph 99.9 1.6E-25 3.5E-30 202.5 17.7 204 52-257 107-361 (376)
9 TIGR03364 HpnW_proposed FAD de 99.9 1E-25 2.2E-30 203.3 15.8 194 53-247 104-364 (365)
10 COG0665 DadA Glycine/D-amino a 99.9 2E-24 4.4E-29 195.9 17.4 206 53-258 115-369 (387)
11 PRK01747 mnmC bifunctional tRN 99.9 9.1E-25 2E-29 211.2 15.6 198 57-257 374-634 (662)
12 PF01266 DAO: FAD dependent ox 99.9 1.1E-24 2.3E-29 194.5 13.8 198 51-252 105-358 (358)
13 TIGR01377 soxA_mon sarcosine o 99.9 1.1E-23 2.3E-28 190.9 19.3 206 51-257 102-361 (380)
14 KOG2844|consensus 99.9 1.4E-23 3E-28 193.3 14.5 227 29-256 109-401 (856)
15 PRK11101 glpA sn-glycerol-3-ph 99.9 2.4E-22 5.1E-27 190.2 19.9 203 52-258 109-372 (546)
16 TIGR03377 glycerol3P_GlpA glyc 99.9 1.2E-22 2.6E-27 191.3 17.6 202 53-258 89-349 (516)
17 KOG2853|consensus 99.9 4.6E-22 9.9E-27 171.1 14.8 219 38-256 177-482 (509)
18 PRK11728 hydroxyglutarate oxid 99.9 2.4E-21 5.3E-26 176.6 15.8 201 52-253 110-393 (393)
19 PRK13369 glycerol-3-phosphate 99.9 5.1E-21 1.1E-25 179.7 17.8 199 58-259 122-380 (502)
20 PLN02464 glycerol-3-phosphate 99.9 1E-20 2.2E-25 181.3 18.4 198 58-256 193-454 (627)
21 PRK12266 glpD glycerol-3-phosp 99.8 2.3E-18 5E-23 161.8 17.8 184 73-259 140-381 (508)
22 KOG2820|consensus 99.8 2.8E-18 6.2E-23 147.7 13.9 234 25-259 73-381 (399)
23 KOG2852|consensus 99.7 3E-17 6.6E-22 138.7 13.2 178 81-258 140-365 (380)
24 COG0578 GlpA Glycerol-3-phosph 99.7 2.5E-16 5.5E-21 145.6 18.1 205 54-259 125-389 (532)
25 COG0579 Predicted dehydrogenas 99.6 2.9E-14 6.4E-19 129.4 14.1 230 27-256 75-375 (429)
26 TIGR01320 mal_quin_oxido malat 99.4 1.4E-11 3E-16 115.2 16.4 202 52-254 129-443 (483)
27 PRK13339 malate:quinone oxidor 99.4 7E-12 1.5E-16 116.9 13.7 203 52-254 135-450 (497)
28 KOG0042|consensus 99.4 4.3E-12 9.4E-17 115.6 11.6 194 58-255 189-447 (680)
29 PTZ00383 malate:quinone oxidor 99.3 3.1E-11 6.7E-16 112.9 11.7 206 52-259 161-477 (497)
30 PRK05257 malate:quinone oxidor 99.3 8.2E-11 1.8E-15 110.2 13.6 203 52-255 134-449 (494)
31 KOG2665|consensus 99.0 1.6E-09 3.5E-14 93.3 9.6 201 53-254 158-452 (453)
32 PLN02697 lycopene epsilon cycl 98.3 3.8E-05 8.3E-10 72.7 15.4 171 83-258 187-411 (529)
33 TIGR02032 GG-red-SF geranylger 98.1 0.00013 2.7E-09 63.3 14.7 164 83-252 86-294 (295)
34 TIGR01790 carotene-cycl lycope 98.0 0.00048 1E-08 62.6 16.2 172 83-258 80-301 (388)
35 PLN02463 lycopene beta cyclase 97.5 0.0046 1E-07 57.6 15.9 173 83-259 109-334 (447)
36 PF05834 Lycopene_cycl: Lycope 97.5 0.0045 9.9E-08 56.2 14.9 138 83-225 82-244 (374)
37 PRK06185 hypothetical protein; 97.3 0.015 3.2E-07 53.2 15.6 172 84-257 104-322 (407)
38 PF06039 Mqo: Malate:quinone o 97.0 0.0068 1.5E-07 55.9 10.7 168 58-225 140-396 (488)
39 COG0644 FixC Dehydrogenases (f 96.9 0.047 1E-06 50.0 15.3 174 83-258 90-308 (396)
40 PRK08773 2-octaprenyl-3-methyl 96.8 0.021 4.5E-07 52.0 11.7 174 83-257 108-320 (392)
41 PRK10157 putative oxidoreducta 96.7 0.032 7E-07 51.6 12.9 50 83-132 103-165 (428)
42 PRK08244 hypothetical protein; 96.4 0.13 2.8E-06 48.5 14.9 169 85-257 97-310 (493)
43 TIGR02023 BchP-ChlP geranylger 96.4 0.14 3E-06 46.6 14.4 167 83-258 87-303 (388)
44 PRK07333 2-octaprenyl-6-methox 96.4 0.052 1.1E-06 49.5 11.6 174 83-257 106-318 (403)
45 TIGR03378 glycerol3P_GlpB glyc 96.3 0.0055 1.2E-07 56.3 4.5 54 83-136 258-328 (419)
46 PRK07608 ubiquinone biosynthes 96.2 0.051 1.1E-06 49.3 10.5 96 83-178 106-224 (388)
47 TIGR01984 UbiH 2-polyprenyl-6- 95.8 0.14 3E-06 46.3 11.6 50 83-132 100-163 (382)
48 PRK10015 oxidoreductase; Provi 95.4 0.22 4.9E-06 46.1 11.6 50 83-132 103-165 (429)
49 PRK06847 hypothetical protein; 95.3 1.1 2.4E-05 40.3 15.3 50 83-132 102-164 (375)
50 TIGR01988 Ubi-OHases Ubiquinon 95.2 0.26 5.7E-06 44.3 11.1 50 83-132 101-164 (385)
51 TIGR02028 ChlP geranylgeranyl 95.0 2 4.4E-05 39.3 16.5 165 84-257 89-308 (398)
52 TIGR01789 lycopene_cycl lycope 94.7 0.69 1.5E-05 42.0 12.3 134 83-224 84-237 (370)
53 PF04820 Trp_halogenase: Trypt 94.6 1.1 2.4E-05 41.9 13.7 166 83-256 149-353 (454)
54 PLN00093 geranylgeranyl diphos 94.5 2.2 4.8E-05 39.8 15.5 166 84-257 128-347 (450)
55 PRK08020 ubiF 2-octaprenyl-3-m 94.5 0.25 5.4E-06 44.8 9.1 168 84-256 108-318 (391)
56 PLN02612 phytoene desaturase 94.4 1.7 3.8E-05 41.8 15.0 170 88-259 308-550 (567)
57 PRK04176 ribulose-1,5-biphosph 94.0 0.089 1.9E-06 45.3 4.8 50 83-132 99-174 (257)
58 PRK06134 putative FAD-binding 93.9 0.058 1.3E-06 52.0 3.9 50 83-132 212-279 (581)
59 PRK05732 2-octaprenyl-6-methox 93.6 1.6 3.5E-05 39.5 12.5 48 85-132 109-170 (395)
60 COG2081 Predicted flavoprotein 93.3 0.12 2.6E-06 46.9 4.5 49 83-131 101-167 (408)
61 PRK07233 hypothetical protein; 93.3 5.4 0.00012 36.4 15.6 44 87-130 197-253 (434)
62 TIGR03467 HpnE squalene-associ 92.4 7.4 0.00016 35.2 15.2 42 90-131 199-254 (419)
63 TIGR02732 zeta_caro_desat caro 92.2 2.5 5.5E-05 39.7 12.0 48 89-136 220-290 (474)
64 TIGR02730 carot_isom carotene 92.2 0.16 3.5E-06 47.8 4.0 58 76-136 219-293 (493)
65 TIGR00136 gidA glucose-inhibit 92.0 0.17 3.8E-06 48.7 4.0 50 82-131 90-154 (617)
66 KOG0404|consensus 90.7 0.32 6.9E-06 40.9 3.7 70 58-135 48-128 (322)
67 TIGR00551 nadB L-aspartate oxi 90.7 0.83 1.8E-05 43.1 7.1 49 85-133 125-191 (488)
68 PRK06184 hypothetical protein; 90.5 9.9 0.00022 35.9 14.2 45 88-132 109-169 (502)
69 PRK07494 2-octaprenyl-6-methox 90.4 2.6 5.7E-05 38.1 9.9 49 84-132 107-168 (388)
70 PRK07364 2-octaprenyl-6-methox 90.0 6 0.00013 36.0 12.1 48 85-132 118-182 (415)
71 PRK05192 tRNA uridine 5-carbox 90.0 0.36 7.7E-06 46.7 3.9 52 83-134 95-160 (618)
72 PLN02487 zeta-carotene desatur 89.8 4.4 9.4E-05 39.1 11.2 52 85-136 291-366 (569)
73 TIGR01813 flavo_cyto_c flavocy 89.7 0.41 9E-06 44.3 4.1 50 83-132 125-193 (439)
74 PLN02985 squalene monooxygenas 89.4 6.2 0.00013 37.6 11.8 50 83-132 142-209 (514)
75 PRK06481 fumarate reductase fl 89.2 0.81 1.8E-05 43.4 5.7 50 83-132 185-252 (506)
76 PF03486 HI0933_like: HI0933-l 89.0 0.31 6.7E-06 45.0 2.7 47 85-131 106-166 (409)
77 TIGR03862 flavo_PP4765 unchara 89.0 0.63 1.4E-05 42.4 4.7 47 85-131 83-141 (376)
78 PRK09126 hypothetical protein; 88.9 6.1 0.00013 35.7 11.1 48 85-132 107-168 (392)
79 PF13738 Pyr_redox_3: Pyridine 87.1 0.37 8E-06 39.2 1.8 51 83-133 77-140 (203)
80 PRK08401 L-aspartate oxidase; 86.9 0.87 1.9E-05 42.7 4.3 48 87-134 119-178 (466)
81 PRK05714 2-octaprenyl-3-methyl 86.8 0.9 2E-05 41.5 4.4 49 84-132 108-169 (405)
82 PRK07045 putative monooxygenas 85.8 22 0.00047 32.1 12.9 47 85-131 103-165 (388)
83 PRK05945 sdhA succinate dehydr 85.6 2.1 4.5E-05 41.3 6.3 47 87-133 134-199 (575)
84 PRK12839 hypothetical protein; 85.5 1 2.2E-05 43.5 4.1 49 84-132 210-277 (572)
85 PRK12843 putative FAD-binding 85.4 0.98 2.1E-05 43.6 4.0 48 85-132 218-283 (578)
86 PRK07121 hypothetical protein; 85.2 1.1 2.3E-05 42.3 4.1 47 86-132 175-240 (492)
87 TIGR00275 flavoprotein, HI0933 84.8 1.4 2.9E-05 40.5 4.5 45 87-131 104-160 (400)
88 TIGR01812 sdhA_frdA_Gneg succi 84.7 2.3 4.9E-05 40.9 6.1 46 87-132 128-192 (566)
89 PRK08274 tricarballylate dehyd 84.6 1.3 2.8E-05 41.3 4.3 45 87-131 130-192 (466)
90 PRK08255 salicylyl-CoA 5-hydro 84.0 1.5 3.3E-05 43.8 4.8 49 84-132 93-142 (765)
91 COG1252 Ndh NADH dehydrogenase 83.9 1.6 3.5E-05 40.1 4.5 67 83-149 204-282 (405)
92 TIGR03169 Nterm_to_SelD pyridi 83.8 1.5 3.2E-05 39.5 4.2 73 56-132 25-108 (364)
93 PRK08163 salicylate hydroxylas 83.4 2 4.4E-05 38.9 4.9 51 83-133 104-168 (396)
94 PF00890 FAD_binding_2: FAD bi 83.3 1.2 2.5E-05 40.9 3.4 48 85-132 138-204 (417)
95 TIGR01292 TRX_reduct thioredox 83.1 1.9 4.2E-05 37.1 4.5 79 51-132 18-113 (300)
96 TIGR02485 CobZ_N-term precorri 83.0 1.6 3.5E-05 40.3 4.2 45 87-131 122-183 (432)
97 TIGR00292 thiazole biosynthesi 82.7 2.1 4.5E-05 36.8 4.4 32 84-115 96-128 (254)
98 TIGR02734 crtI_fam phytoene de 82.7 1.8 3.9E-05 40.8 4.5 43 88-130 219-275 (502)
99 PRK11445 putative oxidoreducta 82.6 35 0.00076 30.4 13.7 49 83-132 94-158 (351)
100 PF13454 NAD_binding_9: FAD-NA 81.8 1.9 4.2E-05 33.8 3.7 41 89-129 98-155 (156)
101 COG2509 Uncharacterized FAD-de 81.5 2.3 4.9E-05 39.5 4.4 53 83-135 168-234 (486)
102 COG1635 THI4 Ribulose 1,5-bisp 81.4 2.5 5.3E-05 35.6 4.2 43 83-125 104-149 (262)
103 PRK06854 adenylylsulfate reduc 81.3 1.8 4E-05 42.0 4.0 48 85-132 129-196 (608)
104 PF01494 FAD_binding_3: FAD bi 81.1 1.9 4.1E-05 37.9 3.8 50 83-132 106-173 (356)
105 PRK06175 L-aspartate oxidase; 80.9 2.7 5.8E-05 39.1 4.8 47 86-132 126-190 (433)
106 PRK06834 hypothetical protein; 79.4 2.1 4.6E-05 40.4 3.7 45 88-132 100-157 (488)
107 TIGR01816 sdhA_forward succina 79.3 2.4 5.3E-05 40.8 4.2 47 87-133 118-183 (565)
108 PRK08626 fumarate reductase fl 79.0 2.7 5.8E-05 41.3 4.4 45 88-132 158-221 (657)
109 TIGR03143 AhpF_homolog putativ 78.9 2.7 5.8E-05 40.4 4.3 81 51-133 22-116 (555)
110 PRK12842 putative succinate de 78.1 2.6 5.7E-05 40.6 4.0 45 87-131 213-275 (574)
111 PRK05675 sdhA succinate dehydr 77.7 3 6.5E-05 40.2 4.3 47 86-132 124-190 (570)
112 PRK06263 sdhA succinate dehydr 77.7 6.8 0.00015 37.5 6.6 46 87-132 133-198 (543)
113 PLN02172 flavin-containing mon 77.0 3.7 8.1E-05 38.5 4.5 48 86-133 109-175 (461)
114 PRK07512 L-aspartate oxidase; 77.0 3.5 7.5E-05 39.2 4.4 47 86-132 134-198 (513)
115 PTZ00139 Succinate dehydrogena 76.3 3.5 7.7E-05 40.2 4.3 46 87-132 165-230 (617)
116 PF01946 Thi4: Thi4 family; PD 75.0 4.1 8.8E-05 34.2 3.7 51 83-133 91-167 (230)
117 PRK08071 L-aspartate oxidase; 74.4 4.5 9.8E-05 38.4 4.4 48 84-132 126-191 (510)
118 PRK05329 anaerobic glycerol-3- 74.3 4 8.7E-05 37.8 4.0 48 85-132 256-319 (422)
119 PF01134 GIDA: Glucose inhibit 74.2 3.7 8.1E-05 37.6 3.6 47 83-129 90-150 (392)
120 PRK07803 sdhA succinate dehydr 73.7 7.3 0.00016 38.0 5.8 46 87-132 137-214 (626)
121 PRK09078 sdhA succinate dehydr 73.4 5 0.00011 38.9 4.6 47 87-133 148-214 (598)
122 PRK07573 sdhA succinate dehydr 73.4 4.9 0.00011 39.4 4.5 42 91-132 173-233 (640)
123 PRK12845 3-ketosteroid-delta-1 71.6 5.6 0.00012 38.4 4.3 46 87-132 216-279 (564)
124 PLN00128 Succinate dehydrogena 71.6 6 0.00013 38.7 4.6 46 87-132 186-251 (635)
125 PRK05568 flavodoxin; Provision 71.1 12 0.00027 28.5 5.5 57 78-134 6-63 (142)
126 PRK08132 FAD-dependent oxidore 70.9 99 0.0022 29.5 14.5 44 89-132 126-186 (547)
127 PRK08275 putative oxidoreducta 70.8 5.7 0.00012 38.1 4.3 46 87-132 136-201 (554)
128 PRK08958 sdhA succinate dehydr 70.6 5.6 0.00012 38.5 4.2 46 87-132 142-207 (588)
129 PRK06452 sdhA succinate dehydr 70.5 5.8 0.00012 38.2 4.2 45 87-131 135-198 (566)
130 PRK04965 NADH:flavorubredoxin 70.1 7.3 0.00016 35.2 4.6 58 88-145 183-254 (377)
131 PRK12844 3-ketosteroid-delta-1 69.7 5.1 0.00011 38.5 3.7 46 87-132 207-270 (557)
132 PRK12775 putative trifunctiona 69.7 13 0.00029 38.4 6.8 76 50-132 447-530 (1006)
133 PRK08205 sdhA succinate dehydr 69.6 6.5 0.00014 38.0 4.4 47 86-132 138-207 (583)
134 PRK12779 putative bifunctional 68.9 16 0.00035 37.6 7.1 76 50-132 323-405 (944)
135 PRK07190 hypothetical protein; 68.6 6.2 0.00013 37.2 3.9 43 89-131 110-165 (487)
136 TIGR01753 flav_short flavodoxi 67.5 16 0.00034 27.6 5.4 54 79-132 4-58 (140)
137 PRK12416 protoporphyrinogen ox 66.5 1.1E+02 0.0024 28.3 12.1 68 190-258 372-462 (463)
138 COG0492 TrxB Thioredoxin reduc 66.0 8.2 0.00018 34.1 3.9 52 83-134 56-118 (305)
139 PRK07057 sdhA succinate dehydr 64.8 9.2 0.0002 37.1 4.3 46 87-132 147-212 (591)
140 PRK13977 myosin-cross-reactive 64.8 10 0.00023 36.5 4.6 72 60-132 190-294 (576)
141 PRK07804 L-aspartate oxidase; 64.7 11 0.00024 36.1 4.8 47 86-132 142-211 (541)
142 PRK15317 alkyl hydroperoxide r 64.6 8.6 0.00019 36.5 4.1 48 85-132 263-323 (517)
143 COG1233 Phytoene dehydrogenase 63.4 7.6 0.00017 36.6 3.4 42 88-129 224-279 (487)
144 PTZ00318 NADH dehydrogenase-li 62.9 14 0.00031 34.0 5.1 50 89-138 229-287 (424)
145 PRK09564 coenzyme A disulfide 62.5 10 0.00022 35.0 4.1 52 88-139 191-255 (444)
146 PRK05569 flavodoxin; Provision 61.3 23 0.0005 26.9 5.3 56 78-133 6-62 (141)
147 PRK10262 thioredoxin reductase 61.0 13 0.00029 32.6 4.4 49 84-132 59-118 (321)
148 PRK09897 hypothetical protein; 60.9 10 0.00022 36.3 3.9 44 90-133 109-168 (534)
149 TIGR03140 AhpF alkyl hydropero 60.9 10 0.00022 36.0 3.8 48 85-132 264-324 (515)
150 TIGR00562 proto_IX_ox protopor 60.8 1.4E+02 0.003 27.5 11.6 68 190-257 371-460 (462)
151 PRK12835 3-ketosteroid-delta-1 60.2 10 0.00022 36.8 3.7 44 89-132 214-276 (584)
152 TIGR01424 gluta_reduc_2 glutat 59.6 15 0.00032 34.2 4.6 42 90-131 92-142 (446)
153 PRK07588 hypothetical protein; 58.8 11 0.00024 34.1 3.6 47 85-132 100-159 (391)
154 TIGR03169 Nterm_to_SelD pyridi 58.8 15 0.00033 32.8 4.4 47 89-135 192-247 (364)
155 PRK06126 hypothetical protein; 58.7 10 0.00023 36.1 3.5 48 85-132 123-189 (545)
156 PLN02546 glutathione reductase 58.6 15 0.00033 35.3 4.6 41 91-131 181-228 (558)
157 COG0654 UbiH 2-polyprenyl-6-me 58.4 1.4E+02 0.0031 26.9 13.2 50 83-132 99-163 (387)
158 PRK11749 dihydropyrimidine deh 57.0 17 0.00037 33.9 4.5 75 51-132 158-238 (457)
159 PTZ00318 NADH dehydrogenase-li 56.8 15 0.00033 33.8 4.2 50 83-132 57-126 (424)
160 TIGR01811 sdhA_Bsu succinate d 56.5 15 0.00032 35.8 4.2 46 87-132 128-197 (603)
161 PRK09754 phenylpropionate diox 56.4 16 0.00035 33.2 4.3 54 87-140 185-251 (396)
162 PRK14694 putative mercuric red 56.4 20 0.00044 33.4 5.0 46 88-133 218-275 (468)
163 PRK09231 fumarate reductase fl 56.1 16 0.00034 35.4 4.3 46 87-132 132-197 (582)
164 PRK07843 3-ketosteroid-delta-1 55.9 13 0.00028 35.8 3.6 45 88-132 208-270 (557)
165 PRK08010 pyridine nucleotide-d 55.4 15 0.00032 34.0 3.9 46 88-133 199-256 (441)
166 PRK06069 sdhA succinate dehydr 54.0 14 0.00031 35.6 3.7 46 87-132 136-201 (577)
167 TIGR01176 fum_red_Fp fumarate 53.8 20 0.00043 34.7 4.5 46 87-132 131-196 (580)
168 PRK08013 oxidoreductase; Provi 53.3 19 0.00042 32.8 4.2 49 84-132 107-169 (400)
169 PRK11104 hemG protoporphyrinog 52.9 32 0.00068 27.7 4.9 57 78-135 5-62 (177)
170 PRK14727 putative mercuric red 52.9 17 0.00037 34.1 3.9 45 89-133 229-285 (479)
171 TIGR02734 crtI_fam phytoene de 52.9 59 0.0013 30.5 7.5 65 194-259 394-494 (502)
172 PRK12837 3-ketosteroid-delta-1 52.8 17 0.00036 34.6 3.8 44 88-131 173-235 (513)
173 PF12831 FAD_oxidored: FAD dep 52.3 4.7 0.0001 37.3 0.0 48 83-130 85-149 (428)
174 PRK07395 L-aspartate oxidase; 51.5 21 0.00045 34.4 4.3 46 87-132 133-198 (553)
175 PRK04965 NADH:flavorubredoxin 50.1 16 0.00034 33.0 3.1 49 83-131 52-111 (377)
176 PRK12814 putative NADPH-depend 50.0 42 0.0009 33.0 6.2 75 51-132 211-291 (652)
177 TIGR01316 gltA glutamate synth 49.9 30 0.00064 32.2 4.9 76 50-133 150-232 (449)
178 TIGR02374 nitri_red_nirB nitri 49.7 10 0.00022 38.1 1.9 49 83-131 49-108 (785)
179 PRK06617 2-octaprenyl-6-methox 49.0 27 0.00059 31.4 4.5 50 83-132 99-161 (374)
180 PRK09077 L-aspartate oxidase; 48.9 30 0.00066 33.0 4.9 46 87-132 137-208 (536)
181 PRK12770 putative glutamate sy 48.2 39 0.00085 30.2 5.3 74 50-131 35-130 (352)
182 PRK06996 hypothetical protein; 48.0 28 0.0006 31.7 4.4 46 84-129 111-172 (398)
183 PRK13984 putative oxidoreducta 47.9 47 0.001 32.2 6.1 75 50-131 300-380 (604)
184 PRK06116 glutathione reductase 47.7 30 0.00065 32.1 4.6 38 94-131 99-143 (450)
185 PRK08849 2-octaprenyl-3-methyl 47.7 23 0.0005 32.0 3.8 45 88-132 110-168 (384)
186 PRK08243 4-hydroxybenzoate 3-m 47.6 32 0.00069 31.2 4.7 45 88-132 103-164 (392)
187 TIGR01810 betA choline dehydro 47.4 14 0.0003 35.2 2.3 44 92-135 197-260 (532)
188 COG1252 Ndh NADH dehydrogenase 47.0 19 0.00041 33.2 3.0 75 56-134 28-114 (405)
189 PRK05249 soluble pyridine nucl 46.9 25 0.00053 32.7 3.9 45 88-132 216-273 (461)
190 TIGR03385 CoA_CoA_reduc CoA-di 46.0 18 0.00038 33.3 2.8 71 57-131 13-103 (427)
191 PRK06912 acoL dihydrolipoamide 45.9 26 0.00056 32.7 3.9 45 88-132 211-269 (458)
192 PRK07845 flavoprotein disulfid 45.5 36 0.00078 31.8 4.8 40 93-132 97-152 (466)
193 COG1445 FrwB Phosphotransferas 45.5 32 0.00069 26.0 3.5 52 80-131 10-68 (122)
194 TIGR01318 gltD_gamma_fam gluta 45.0 27 0.00058 32.8 3.8 46 87-132 190-239 (467)
195 PRK06416 dihydrolipoamide dehy 45.0 35 0.00076 31.7 4.6 38 94-131 98-146 (462)
196 PRK08850 2-octaprenyl-6-methox 44.7 31 0.00068 31.4 4.2 45 88-132 111-169 (405)
197 PRK09853 putative selenate red 44.5 37 0.0008 35.2 4.9 76 50-132 556-636 (1019)
198 PRK12778 putative bifunctional 44.2 38 0.00083 33.9 5.0 75 51-132 449-530 (752)
199 PRK13512 coenzyme A disulfide 44.1 30 0.00065 32.0 4.0 44 89-132 190-242 (438)
200 TIGR00829 FRU PTS system, fruc 43.8 26 0.00056 24.6 2.7 49 82-130 8-63 (85)
201 PRK06183 mhpA 3-(3-hydroxyphen 43.6 23 0.00049 33.8 3.2 45 88-132 113-175 (538)
202 KOG1336|consensus 43.4 40 0.00087 31.6 4.5 41 91-131 258-313 (478)
203 TIGR01424 gluta_reduc_2 glutat 43.0 32 0.00069 31.9 4.0 45 88-132 207-264 (446)
204 PLN02661 Putative thiazole syn 43.0 43 0.00093 30.4 4.6 29 86-114 170-200 (357)
205 PLN02815 L-aspartate oxidase 42.8 35 0.00077 33.2 4.4 47 86-132 153-223 (594)
206 COG1148 HdrA Heterodisulfide r 41.6 26 0.00056 33.2 3.0 67 63-130 390-475 (622)
207 PRK08641 sdhA succinate dehydr 41.6 39 0.00084 32.8 4.4 47 86-132 131-201 (589)
208 TIGR03385 CoA_CoA_reduc CoA-di 41.3 38 0.00082 31.1 4.2 49 88-136 179-239 (427)
209 PRK06116 glutathione reductase 40.8 28 0.00061 32.3 3.3 45 88-132 208-266 (450)
210 PRK07308 flavodoxin; Validated 40.7 75 0.0016 24.3 5.2 54 78-131 6-60 (146)
211 PRK06467 dihydrolipoamide dehy 40.5 46 0.001 31.2 4.7 36 96-131 101-148 (471)
212 COG0694 Thioredoxin-like prote 40.0 1.2E+02 0.0026 21.8 5.6 66 189-254 5-76 (93)
213 PRK12831 putative oxidoreducta 39.7 60 0.0013 30.4 5.3 74 51-131 158-240 (464)
214 KOG1298|consensus 39.6 3E+02 0.0066 25.6 9.3 170 85-255 144-362 (509)
215 PLN02507 glutathione reductase 39.5 47 0.001 31.4 4.6 36 96-131 132-179 (499)
216 PRK07251 pyridine nucleotide-d 39.5 35 0.00076 31.5 3.7 44 89-132 199-254 (438)
217 PRK12810 gltD glutamate syntha 39.3 50 0.0011 31.0 4.7 75 51-132 161-241 (471)
218 KOG1346|consensus 38.9 26 0.00057 32.5 2.6 53 83-135 388-454 (659)
219 TIGR02731 phytoene_desat phyto 38.6 34 0.00073 31.7 3.4 44 87-130 212-275 (453)
220 PRK05249 soluble pyridine nucl 38.0 53 0.0012 30.5 4.7 39 93-131 99-149 (461)
221 TIGR03219 salicylate_mono sali 38.0 23 0.00049 32.4 2.1 47 84-132 101-160 (414)
222 PRK05976 dihydrolipoamide dehy 37.9 54 0.0012 30.6 4.7 37 95-131 99-154 (472)
223 PF12724 Flavodoxin_5: Flavodo 37.7 48 0.001 25.4 3.7 58 79-136 3-60 (143)
224 PRK06703 flavodoxin; Provision 37.7 69 0.0015 24.6 4.6 53 78-130 6-59 (151)
225 PRK06416 dihydrolipoamide dehy 37.6 40 0.00086 31.4 3.8 45 88-132 213-273 (462)
226 TIGR02061 aprA adenosine phosp 37.6 43 0.00094 32.7 4.1 46 87-132 125-192 (614)
227 TIGR01421 gluta_reduc_1 glutat 37.0 52 0.0011 30.6 4.4 39 93-131 96-141 (450)
228 PRK06370 mercuric reductase; V 36.5 42 0.00092 31.2 3.8 45 88-132 212-272 (463)
229 PRK09754 phenylpropionate diox 36.3 32 0.00068 31.3 2.8 35 98-132 68-113 (396)
230 PRK09564 coenzyme A disulfide 36.1 30 0.00064 31.9 2.6 77 52-131 19-115 (444)
231 PRK13748 putative mercuric red 35.6 45 0.00098 31.9 3.9 46 88-133 310-367 (561)
232 TIGR01350 lipoamide_DH dihydro 35.5 47 0.001 30.8 3.9 45 88-132 211-270 (461)
233 PRK06756 flavodoxin; Provision 35.4 1.1E+02 0.0025 23.3 5.5 54 78-131 6-61 (148)
234 PF02474 NodA: Nodulation prot 35.2 83 0.0018 25.5 4.5 56 186-245 11-71 (196)
235 PRK12769 putative oxidoreducta 34.9 79 0.0017 31.0 5.5 76 50-132 344-425 (654)
236 PRK05976 dihydrolipoamide dehy 34.4 49 0.0011 30.9 3.8 45 88-132 221-282 (472)
237 PLN02507 glutathione reductase 34.4 48 0.001 31.4 3.8 45 88-132 244-301 (499)
238 TIGR01317 GOGAT_sm_gam glutama 34.2 49 0.0011 31.2 3.8 73 51-131 161-240 (485)
239 PRK06475 salicylate hydroxylas 34.2 68 0.0015 29.1 4.7 49 84-132 103-168 (400)
240 PRK07251 pyridine nucleotide-d 33.5 72 0.0016 29.4 4.8 36 96-131 84-130 (438)
241 PF00743 FMO-like: Flavin-bind 33.2 32 0.00069 33.0 2.4 68 84-151 80-173 (531)
242 PRK14989 nitrite reductase sub 32.9 30 0.00066 35.2 2.2 44 88-131 59-113 (847)
243 PF04033 DUF365: Domain of unk 32.8 59 0.0013 23.1 3.0 43 27-70 5-50 (97)
244 TIGR01423 trypano_reduc trypan 31.9 52 0.0011 31.1 3.5 45 88-132 231-289 (486)
245 PRK06912 acoL dihydrolipoamide 31.7 79 0.0017 29.4 4.7 35 97-131 99-144 (458)
246 PRK07538 hypothetical protein; 31.5 59 0.0013 29.7 3.8 50 83-132 97-166 (413)
247 TIGR01754 flav_RNR ribonucleot 31.4 1.2E+02 0.0027 22.9 5.1 54 78-131 5-62 (140)
248 TIGR02733 desat_CrtD C-3',4' d 31.4 1.4E+02 0.0031 27.9 6.4 44 87-130 231-293 (492)
249 TIGR00137 gid_trmFO tRNA:m(5)U 31.3 1E+02 0.0022 28.7 5.3 44 84-131 93-137 (433)
250 PF00070 Pyr_redox: Pyridine n 30.9 62 0.0013 21.8 3.0 30 87-116 39-69 (80)
251 PF10087 DUF2325: Uncharacteri 30.7 1.1E+02 0.0024 21.6 4.4 56 89-144 10-82 (97)
252 TIGR02053 MerA mercuric reduct 30.2 60 0.0013 30.2 3.6 44 89-132 208-267 (463)
253 PRK07818 dihydrolipoamide dehy 30.0 71 0.0015 29.8 4.1 45 88-132 213-274 (466)
254 PRK05868 hypothetical protein; 29.5 66 0.0014 29.0 3.7 44 88-132 105-161 (372)
255 PRK12809 putative oxidoreducta 29.4 64 0.0014 31.6 3.8 74 51-132 328-408 (639)
256 PRK10427 putative PTS system f 29.3 56 0.0012 24.4 2.7 49 82-130 13-68 (114)
257 PRK06753 hypothetical protein; 29.1 4.1E+02 0.0088 23.5 12.8 47 84-132 94-153 (373)
258 PF00258 Flavodoxin_1: Flavodo 29.0 1.1E+02 0.0023 23.1 4.3 50 79-128 2-54 (143)
259 PRK06327 dihydrolipoamide dehy 28.9 70 0.0015 29.9 3.9 45 88-132 224-285 (475)
260 PRK06327 dihydrolipoamide dehy 28.5 88 0.0019 29.3 4.5 40 93-132 105-158 (475)
261 PRK00756 acyltransferase NodA; 28.3 1E+02 0.0023 24.7 4.0 53 186-242 11-68 (196)
262 PRK07845 flavoprotein disulfid 28.2 64 0.0014 30.1 3.5 45 89-133 219-276 (466)
263 PRK06115 dihydrolipoamide dehy 27.9 76 0.0017 29.6 3.9 43 89-131 216-276 (466)
264 TIGR01421 gluta_reduc_1 glutat 27.5 68 0.0015 29.9 3.5 44 89-132 208-266 (450)
265 TIGR02733 desat_CrtD C-3',4' d 27.4 68 0.0015 30.1 3.5 28 228-255 461-490 (492)
266 PTZ00058 glutathione reductase 27.4 81 0.0018 30.5 4.0 44 88-131 278-336 (561)
267 TIGR02730 carot_isom carotene 27.3 1.2E+02 0.0025 28.6 5.1 31 227-257 460-492 (493)
268 PRK12771 putative glutamate sy 27.2 91 0.002 30.0 4.4 46 87-132 186-235 (564)
269 COG4635 HemG Flavodoxin [Energ 27.1 1.6E+02 0.0034 23.6 4.8 56 79-134 6-62 (175)
270 PRK07208 hypothetical protein; 26.9 63 0.0014 30.1 3.2 43 88-130 218-279 (479)
271 TIGR01989 COQ6 Ubiquinone bios 26.9 99 0.0021 28.5 4.5 49 84-132 113-184 (437)
272 COG0493 GltD NADPH-dependent g 26.5 87 0.0019 29.5 3.9 53 83-135 168-224 (457)
273 COG1058 CinA Predicted nucleot 26.4 1.2E+02 0.0026 26.2 4.4 40 91-130 23-71 (255)
274 TIGR01292 TRX_reduct thioredox 26.0 74 0.0016 27.1 3.3 40 92-131 180-238 (300)
275 TIGR03315 Se_ygfK putative sel 25.9 1.1E+02 0.0023 31.9 4.8 75 51-132 555-634 (1012)
276 PRK13512 coenzyme A disulfide 25.7 70 0.0015 29.6 3.2 34 99-132 69-118 (438)
277 COG3075 GlpB Anaerobic glycero 25.7 75 0.0016 28.7 3.1 44 88-131 258-317 (421)
278 PTZ00052 thioredoxin reductase 25.1 81 0.0017 29.9 3.6 44 89-132 223-279 (499)
279 TIGR02374 nitri_red_nirB nitri 25.1 88 0.0019 31.6 4.0 43 90-132 184-239 (785)
280 COG2028 Uncharacterized conser 24.8 70 0.0015 24.1 2.4 43 27-70 43-88 (145)
281 PF00732 GMC_oxred_N: GMC oxid 24.6 37 0.0008 29.2 1.1 44 92-135 197-263 (296)
282 PRK06370 mercuric reductase; V 24.5 1.1E+02 0.0024 28.4 4.3 39 93-131 99-145 (463)
283 COG1473 AbgB Metal-dependent a 24.0 55 0.0012 30.1 2.1 32 221-253 91-122 (392)
284 PTZ00058 glutathione reductase 23.3 1.5E+02 0.0032 28.7 5.0 14 118-131 201-214 (561)
285 PRK09271 flavodoxin; Provision 23.2 3.2E+02 0.0069 21.2 6.2 53 78-130 5-62 (160)
286 PTZ00306 NADH-dependent fumara 23.1 99 0.0022 32.8 4.0 45 88-132 544-621 (1167)
287 TIGR01350 lipoamide_DH dihydro 23.1 1.4E+02 0.0031 27.6 4.8 36 96-131 97-143 (461)
288 PRK08105 flavodoxin; Provision 23.0 2.2E+02 0.0048 22.0 5.1 55 77-131 5-60 (149)
289 KOG1399|consensus 23.0 1.3E+02 0.0028 28.2 4.4 68 63-131 66-153 (448)
290 PHA02540 61 DNA primase; Provi 22.9 84 0.0018 28.3 3.0 44 201-244 9-71 (337)
291 PRK12834 putative FAD-binding 22.8 1E+02 0.0022 29.5 3.8 15 118-132 214-228 (549)
292 PRK07846 mycothione reductase; 22.8 72 0.0016 29.7 2.7 34 98-131 99-140 (451)
293 PRK14989 nitrite reductase sub 22.6 98 0.0021 31.6 3.8 44 90-133 189-247 (847)
294 COG2984 ABC-type uncharacteriz 22.1 3.4E+02 0.0073 24.3 6.5 44 71-115 157-201 (322)
295 PRK06895 putative anthranilate 22.0 1.5E+02 0.0033 23.8 4.2 45 88-132 11-56 (190)
296 COG0445 GidA Flavin-dependent 21.5 62 0.0013 31.2 1.9 73 53-134 73-161 (621)
297 TIGR01438 TGR thioredoxin and 21.3 1.1E+02 0.0023 28.9 3.6 45 88-132 220-280 (484)
298 PLN02852 ferredoxin-NADP+ redu 21.2 1.4E+02 0.0031 28.3 4.4 70 55-131 50-126 (491)
299 PF01593 Amino_oxidase: Flavin 20.7 37 0.00081 30.2 0.4 43 91-133 212-267 (450)
300 TIGR01438 TGR thioredoxin and 20.6 1.5E+02 0.0033 27.9 4.4 39 93-131 105-155 (484)
301 PRK11538 ribosome-associated p 20.6 1.8E+02 0.0038 21.3 3.8 45 88-135 4-49 (105)
302 TIGR02360 pbenz_hydroxyl 4-hyd 20.3 1.5E+02 0.0033 26.8 4.3 45 88-132 103-164 (390)
303 PRK14694 putative mercuric red 20.2 1.1E+02 0.0024 28.5 3.4 30 102-131 111-152 (468)
304 COG1249 Lpd Pyruvate/2-oxoglut 20.1 1.9E+02 0.0041 27.2 4.8 47 88-134 94-150 (454)
305 TIGR01755 flav_wrbA NAD(P)H:qu 20.0 2.3E+02 0.005 23.0 4.9 57 78-134 5-83 (197)
306 TIGR01372 soxA sarcosine oxida 20.0 1.3E+02 0.0028 31.2 4.1 48 86-133 213-288 (985)
No 1
>KOG3923|consensus
Probab=100.00 E-value=2.1e-40 Score=278.88 Aligned_cols=230 Identities=40% Similarity=0.665 Sum_probs=209.7
Q ss_pred cCCCCceEEEEEeeEeccCC-----chhHhhhCCCcEECChhhhhcCCCCceeEEEeeeeeeehHHHHHHHHHHHHhCCc
Q psy5261 29 SADGSTGKAMISTYQTSLLK-----NASIENLVPVYRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGG 103 (267)
Q Consensus 29 ~~~~~~g~~~~~g~~~~~~~-----~~~~~~~g~~~~~l~~~el~~~P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~ 103 (267)
+...++|+.+.+|+.+++++ .++|.+..+.++.|+.+|+.-+|.....|+.|++...++.+|+.+|.+.+.++|+
T Consensus 87 ~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l~e~Gv 166 (342)
T KOG3923|consen 87 EEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRLTENGV 166 (342)
T ss_pred ccccccceEEeeeeeeccCCCchhhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHHHHhcCc
Confidence 35578999999999998842 2699999999999999999955733478999999999999999999999999999
Q ss_pred EEEEEeeCCccccc-cCCCEEEEccCcCchhhcCCCCceeecceEEEEECCCcceEEEeC-CeEEEEecCCCeEEEccee
Q psy5261 104 KFRRGTVSSFSGLE-SEFDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAPWLSHFYYLD-YDVYVIPHSNGAVTLGGCR 181 (267)
Q Consensus 104 ~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~~l~~~~~l~p~rg~~~~~~~p~~~~~v~~~-~~~y~~p~~~g~l~lGg~~ 181 (267)
+|.+.+|.++++.. -.+|.||||||.|++.|+.|-.++|+|||++.+++||++++++.| ...|++|..+ .+.+||+.
T Consensus 167 ef~~r~v~~l~E~~~~~~DVivNCtGL~a~~L~gDd~~yPiRGqVl~V~ApWvkhf~~~D~~~ty~iP~~~-~V~lGg~~ 245 (342)
T KOG3923|consen 167 EFVQRRVESLEEVARPEYDVIVNCTGLGAGKLAGDDDLYPIRGQVLKVDAPWVKHFIYRDFSRTYIIPGTE-SVTLGGTK 245 (342)
T ss_pred EEEEeeeccHHHhccCCCcEEEECCccccccccCCcceeeccceEEEeeCCceeEEEEecCCccEEecCCc-eEEEcccc
Confidence 99999999998763 689999999999999999977799999999999999999988744 3369999766 89999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC----------------eEEEeCCCchhhhccHHH
Q psy5261 182 HYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL----------------VIHNYGHGGYGVTTAPGT 245 (267)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd----------------l~~~~G~gg~G~t~a~~~ 245 (267)
++++|+.++++++...|++++.++.|+|..++++..|+|+||.++. |+|++||||.|+|++||+
T Consensus 246 Q~g~w~~ei~~~D~~dIl~rc~aL~P~l~~a~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG~G~Tl~wGt 325 (342)
T KOG3923|consen 246 QEGNWNLEITDEDRRDILERCCALEPSLRHAEIIREWVGLRPGRKQVRLEAELRTRGGKRLTVVHNYGHGGNGFTLGWGT 325 (342)
T ss_pred ccCcccCcCChhhHHHHHHHHHHhCcccccceehhhhhcccCCCCceeeeeeeecCCCccceeEeeccCCCCceecccch
Confidence 9999999999999999999999999999999999999999999875 799999999999999999
Q ss_pred HHHHHHHHHhhhCC
Q psy5261 246 SRYAVQLVKQALDP 259 (267)
Q Consensus 246 a~~la~li~~~l~~ 259 (267)
|...+.++...++.
T Consensus 326 Alea~~Lv~~~l~~ 339 (342)
T KOG3923|consen 326 ALEAAKLVLDALGA 339 (342)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999988775
No 2
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.97 E-value=6.4e-31 Score=233.99 Aligned_cols=217 Identities=21% Similarity=0.250 Sum_probs=181.7
Q ss_pred EEEee-EeccCCc---------hhHhhhCCCcEECChhhhhcC-C---CCceeEEEeee-eeeehHHHHHHHHHHHHhCC
Q psy5261 38 MISTY-QTSLLKN---------ASIENLVPVYRDAQPDELVVG-N---KTYKYGSYSET-LVIENSDFLPWAMKRVSKQG 102 (267)
Q Consensus 38 ~~~g~-~~~~~~~---------~~~~~~g~~~~~l~~~el~~~-P---~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G 102 (267)
...|+ .+..+++ ...+..+.++++++++|++++ | .++.+|++++. |++||.+++.+|++.++++|
T Consensus 72 ~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g 151 (337)
T TIGR02352 72 HQCGTLVVAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKLG 151 (337)
T ss_pred EEccEEEEeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcccceEEEcCCCceEChHHHHHHHHHHHHHcC
Confidence 35676 5655531 123667889999999999998 7 23456777664 99999999999999999999
Q ss_pred cEEEE-EeeCCcccc------------ccCCCEEEEccCcCchhhcCCCCceeecceEEEEECCC---cceE---EEeCC
Q psy5261 103 GKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAPW---LSHF---YYLDY 163 (267)
Q Consensus 103 ~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~l~~~~~l~p~rg~~~~~~~p~---~~~~---v~~~~ 163 (267)
++|+. ++|++++.. .++||+||+|+|+|+..|.+ .++.|+|||++.++++. ...+ ...+.
T Consensus 152 ~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~~~~l~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 230 (337)
T TIGR02352 152 VEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAGAWAGELLP-LPLRPVRGQPLRLEAPAVPLLNRPLRAVVYGR 230 (337)
T ss_pred CEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCChhhhhccc-CCccccCceEEEeeccccccCCcccceEEEcC
Confidence 99998 688887531 25899999999999999887 89999999999998641 1111 12345
Q ss_pred eEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------------eEE
Q psy5261 164 DVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-------------VIH 230 (267)
Q Consensus 164 ~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~ 230 (267)
..|++|+.+|++++|++.+..+++..++.+..+.+.+.+.++||.+.+.++.+.|+|+||+++| +|+
T Consensus 231 ~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~g~r~~t~D~~piig~~~~~~~~~~ 310 (337)
T TIGR02352 231 RVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLETWAGLRPGTPDNLPYIGEHPEDRRLLI 310 (337)
T ss_pred CEEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcccCcHHHheecCCCCCCCCCCEeCccCCCCCEEE
Confidence 6799999888999999988777777788999999999999999999999999999999999998 999
Q ss_pred EeCCCchhhhccHHHHHHHHHHHHh
Q psy5261 231 NYGHGGYGVTTAPGTSRYAVQLVKQ 255 (267)
Q Consensus 231 ~~G~gg~G~t~a~~~a~~la~li~~ 255 (267)
++||||+||+++|++|+.+|++|.+
T Consensus 311 ~~g~~g~G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 311 ATGHYRNGILLAPATAEVIADLILG 335 (337)
T ss_pred EcccccCceehhhHHHHHHHHHHhc
Confidence 9999999999999999999999986
No 3
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.96 E-value=4.9e-28 Score=221.93 Aligned_cols=230 Identities=19% Similarity=0.140 Sum_probs=181.6
Q ss_pred cCCCCceEE---EEEee-EeccCCc---------hhHhhhCCCcEECChhhhhcC-CC------CceeEEEeee-eeeeh
Q psy5261 29 SADGSTGKA---MISTY-QTSLLKN---------ASIENLVPVYRDAQPDELVVG-NK------TYKYGSYSET-LVIEN 87 (267)
Q Consensus 29 ~~~~~~g~~---~~~g~-~~~~~~~---------~~~~~~g~~~~~l~~~el~~~-P~------~~~~g~~~~~-~~vdp 87 (267)
++.+++|+. ...|. .++.+++ ..+++.|+++++++++|+.++ |. .+.+|++++. +++||
T Consensus 121 ~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p 200 (416)
T PRK00711 121 ALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEAGVPYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDC 200 (416)
T ss_pred HHHHhhCCccccccCcEEEEECCHHHHHHHHHHHHHHHHcCCCceecCHHHHHHhCCCccCCCccceeEEECCCcccCCH
Confidence 344455553 34676 5555531 244678999999999999988 81 2345666665 89999
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchhhcC----CCCceeecceEEEE
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKV 150 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~ 150 (267)
.+++.+|++.++++|++|++ ++|++++.. .++||+||+|+|.|+..+++ ++|+.|+|||.+.+
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~~~a~~VV~a~G~~~~~l~~~~g~~~pi~p~rg~~~~~ 280 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYSTALLKPLGVDIPVYPLKGYSLTV 280 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcEEeCCEEEECCCcchHHHHHHhCCCcccCCccceEEEE
Confidence 99999999999999999997 688877431 25799999999999988764 57899999999877
Q ss_pred ECCC---cc-eEEEeCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCC
Q psy5261 151 WAPW---LS-HFYYLDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRS 226 (267)
Q Consensus 151 ~~p~---~~-~~v~~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~p 226 (267)
+.+. .. ..+.+....+.+++.+|++++|++.+..+++..++.+..+.+.+.+.++||.+.+.++.+.|+|+||+++
T Consensus 281 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~t~ 360 (416)
T PRK00711 281 PITDEDRAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGGDLSQATFWTGLRPMTP 360 (416)
T ss_pred ecCCCCCCCceeEEecccCEEEeecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcccccccceeeccCCCCC
Confidence 5421 11 1222333345667777899999988877777778888899999999999999988889999999999999
Q ss_pred C------------eEEEeCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 227 L------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 227 d------------l~~~~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
| +|+++||+|+||++||++|+++|++|.+.-.
T Consensus 361 D~~PiIG~~~~~gl~~a~G~~g~G~~~ap~~g~~la~li~g~~~ 404 (416)
T PRK00711 361 DGTPIVGATRYKNLWLNTGHGTLGWTMACGSGQLLADLISGRKP 404 (416)
T ss_pred CCCCEeCCcCCCCEEEecCCchhhhhhhhhHHHHHHHHHcCCCC
Confidence 8 8999999999999999999999999987543
No 4
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.95 E-value=3.9e-27 Score=215.78 Aligned_cols=227 Identities=24% Similarity=0.319 Sum_probs=174.5
Q ss_pred cCCCCceEE---EEEee-EeccCCc---------hhHhhhCCCcEECChhhhhcC-C---CCceeEEEeee-eeeehHHH
Q psy5261 29 SADGSTGKA---MISTY-QTSLLKN---------ASIENLVPVYRDAQPDELVVG-N---KTYKYGSYSET-LVIENSDF 90 (267)
Q Consensus 29 ~~~~~~g~~---~~~g~-~~~~~~~---------~~~~~~g~~~~~l~~~el~~~-P---~~~~~g~~~~~-~~vdp~~~ 90 (267)
++.++.|+. ..+|+ .++.+++ ..+++.|+++++++++|++++ | ..+.+|++++. +++|+.++
T Consensus 120 ~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~ga~~~~~~g~~~~~~~ 199 (410)
T PRK12409 120 DIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALLAEGGLERRAVTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKF 199 (410)
T ss_pred HHHHhhCCcceeecCcEEEEECCHHHHHhccHHHHHHHhcCCCeEEcCHHHHHHhCCCCccccceEEEcCCCCccCHHHH
Confidence 334455552 25786 5655531 234677889999999999998 8 23445666654 89999999
Q ss_pred HHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCchhhcC----CCCceeecceEE
Q psy5261 91 LPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVI 148 (267)
Q Consensus 91 ~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~ 148 (267)
+.+|++.++++|++|++ ++|++++.. .++||+||+|+|+|+..+.+ ++|+.|+|||++
T Consensus 200 ~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~~i~p~~g~~~ 279 (410)
T PRK12409 200 TTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDRVNVYPVKGYSI 279 (410)
T ss_pred HHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCCCccccCCceEE
Confidence 99999999999999988 578776431 15799999999999988764 478999999998
Q ss_pred EEECCC------cceE-EEeCCeEEEEe-c-CCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeec
Q psy5261 149 KVWAPW------LSHF-YYLDYDVYVIP-H-SNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWC 219 (267)
Q Consensus 149 ~~~~p~------~~~~-v~~~~~~y~~p-~-~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~ 219 (267)
.++.+. .+.. +.++ ..|+.+ + .++++++||+.+..+.+..++.+..+.+.+.+.++||.+.+..+. .|+
T Consensus 280 ~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~-~w~ 357 (410)
T PRK12409 280 TVNLDDEASRAAAPWVSLLDD-SAKIVTSRLGADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPDVSTRRVV-PWA 357 (410)
T ss_pred EeecCCccccccCCceeeeec-CCcEEEEecCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCCCccccc-eec
Confidence 876421 1111 2232 233333 3 356788999988777777788889999999999999999887765 799
Q ss_pred cccCCCCC------------eEEEeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 220 GLRPHRSL------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 220 G~rp~~pd------------l~~~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
|+||++|| +|+++||||+|+++||++|+++|++|.+..
T Consensus 358 G~r~~t~D~~PiiG~~~~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~~~~ 407 (410)
T PRK12409 358 GLRPMMPNMMPRVGRGRRPGVFYNTGHGHLGWTLSAATADLVAQVVAQKL 407 (410)
T ss_pred ccCCCCCCCCCeeCCCCCCCEEEecCCcccchhhcccHHHHHHHHHcCCC
Confidence 99999998 899999999999999999999999997654
No 5
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.95 E-value=2.8e-27 Score=214.76 Aligned_cols=216 Identities=20% Similarity=0.164 Sum_probs=173.1
Q ss_pred EEEee-EeccCCc------hhHhhhCCC---cEECChhhhhcC-C-CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcE
Q psy5261 38 MISTY-QTSLLKN------ASIENLVPV---YRDAQPDELVVG-N-KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGK 104 (267)
Q Consensus 38 ~~~g~-~~~~~~~------~~~~~~g~~---~~~l~~~el~~~-P-~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~ 104 (267)
...|+ .++.+++ ..+++.+.+ .++++.+|+.++ | ....+|++++. +++||.+++.+|++++++ |++
T Consensus 72 ~~~G~L~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~ 150 (381)
T TIGR03197 72 EWCGVLQLAYDEKEAERLQKLLEQLGFPEELARWVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLT 150 (381)
T ss_pred ccCceEEecCChHHHHHHHHHHHhcCCCHHHheeCCHHHHHHhcCCCCCCCceEeCCCcccChHHHHHHHHhccCC-CcE
Confidence 34676 6665531 223445554 468999999887 5 23446666655 999999999999999999 999
Q ss_pred EEE-EeeCCcccc-----------c-cCCCEEEEccCcCchhhcC--CCCceeecceEEEEECCC----cceEEEeCCeE
Q psy5261 105 FRR-GTVSSFSGL-----------E-SEFDFVFNCAGLGAQALCR--DRKLTPIRGQVIKVWAPW----LSHFYYLDYDV 165 (267)
Q Consensus 105 ~~~-~~V~~l~~~-----------~-~~ad~VV~aaG~~s~~l~~--~~~l~p~rg~~~~~~~p~----~~~~v~~~~~~ 165 (267)
|++ ++|++++.. . ++||+||+|+|.|+..|.. ++|+.|+|||++.++++. .+..+ . ...
T Consensus 151 i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~~~~pi~p~rg~~~~~~~~~~~~~~~~~~-~-~~~ 228 (381)
T TIGR03197 151 LHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQTAHLPLRPVRGQVSHLPATEALSALKTVL-C-YDG 228 (381)
T ss_pred EEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccccccccCCccccccceeeccCCCcccccCceE-e-CCc
Confidence 998 688887532 2 5799999999999998876 689999999999997642 22222 2 235
Q ss_pred EEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCC-----CCCceeeeccccCCCCC-------------
Q psy5261 166 YVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE-----EAPVLYEWCGLRPHRSL------------- 227 (267)
Q Consensus 166 y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~-----~~~~~~~w~G~rp~~pd------------- 227 (267)
|++|+.+|++++|++.+..+.+..++.+..+.+++.+.++||.+. +.++.+.|+|+||++||
T Consensus 229 y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~t~D~~Piig~~~~~~~ 308 (381)
T TIGR03197 229 YLTPANNGEHCIGASYDRNDDDLALREADHAENLERLAECLPALAWASEVDISALQGRVGVRCASPDHLPLVGAVPDFEA 308 (381)
T ss_pred eecccCCCceEeecccCCCCCCCCcCHHHHHHHHHHHHHhCcccchhhccCccccCceEEEeccCCCcCccCCCCCCHHH
Confidence 999998889999999877666677788889999999999999987 68899999999998776
Q ss_pred -------------------------eEEEeCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 228 -------------------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 228 -------------------------l~~~~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
+|+++||+|+||+++|++|+++|++|.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~~i~~~ 362 (381)
T TIGR03197 309 IKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAAQICGE 362 (381)
T ss_pred HHHHHHHhcccccccccccCCCCCCeEEEecccchHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999765
No 6
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.94 E-value=2.8e-26 Score=209.87 Aligned_cols=219 Identities=12% Similarity=0.079 Sum_probs=173.6
Q ss_pred EEEee-EeccCCc---------hhHhhhCCCcEECChhhhhcC-CC---------CceeEEEeee-eeeehHHHHHHHHH
Q psy5261 38 MISTY-QTSLLKN---------ASIENLVPVYRDAQPDELVVG-NK---------TYKYGSYSET-LVIENSDFLPWAMK 96 (267)
Q Consensus 38 ~~~g~-~~~~~~~---------~~~~~~g~~~~~l~~~el~~~-P~---------~~~~g~~~~~-~~vdp~~~~~~L~~ 96 (267)
..+|+ .+..+++ ..+++.|.++++|+++|++++ |. .+.+|++.+. +.+||..++.+|++
T Consensus 112 ~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~~l~~ 191 (407)
T TIGR01373 112 SQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDAVAWGYAR 191 (407)
T ss_pred EeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHHHHHHHHH
Confidence 35786 5554431 124678999999999999998 81 1224444444 89999999999999
Q ss_pred HHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEECC--Ccc
Q psy5261 97 RVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAP--WLS 156 (267)
Q Consensus 97 ~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p--~~~ 156 (267)
.++++|+++++ ++|++++.. .+.|++||+|+|.|+..+.+ ++|+.|.+++++.+++. ..+
T Consensus 192 ~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 271 (407)
T TIGR01373 192 GADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHSSVVAAMAGFRLPIESHPLQALVSEPLKPIID 271 (407)
T ss_pred HHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhhHHHHHHcCCCCCcCcccceEEEecCCCCCcC
Confidence 99999999998 688887421 25799999999999987653 57889999998877652 223
Q ss_pred eEEE-eCCeEEEEecCCCeEEEcceee-cCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------
Q psy5261 157 HFYY-LDYDVYVIPHSNGAVTLGGCRH-YDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL------- 227 (267)
Q Consensus 157 ~~v~-~~~~~y~~p~~~g~l~lGg~~~-~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd------- 227 (267)
.++. .+...|++|..+|++++|++.+ ...++...+.+..+.+++.+.++||.+.+.++.+.|+|+||+|||
T Consensus 272 ~~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~~~~t~D~~PiIg~ 351 (407)
T TIGR01373 272 TVVMSNAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVRMLRSWGGIVDVTPDGSPIIGK 351 (407)
T ss_pred CeEEeCCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCcCCCCeEEEeccccccCCCCCceeCC
Confidence 3333 3356799998888999998754 334455567788899999999999999888899999999999998
Q ss_pred -----eEEEeCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 228 -----VIHNYGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 228 -----l~~~~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
+|+++||+|+|++++|++|+++|++|.+.
T Consensus 352 ~~~~gl~~a~G~~g~G~~~ap~~G~~la~li~~~ 385 (407)
T TIGR01373 352 TPLPNLYLNCGWGTGGFKATPASGTVFAHTLARG 385 (407)
T ss_pred CCCCCeEEEeccCCcchhhchHHHHHHHHHHhCC
Confidence 99999999999999999999999999764
No 7
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.94 E-value=8.6e-26 Score=209.86 Aligned_cols=206 Identities=15% Similarity=0.136 Sum_probs=161.8
Q ss_pred hHhhhCCC-cEECChhhhhcC-C-CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------
Q psy5261 51 SIENLVPV-YRDAQPDELVVG-N-KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------- 116 (267)
Q Consensus 51 ~~~~~g~~-~~~l~~~el~~~-P-~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------- 116 (267)
.+++.|++ +++|+++|++++ | ..+.+|++++. +++||.+++.+|++.++++|++|++ ++|++++..
T Consensus 142 ~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~ 221 (460)
T TIGR03329 142 ALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPD 221 (460)
T ss_pred HHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCC
Confidence 45678876 699999999998 7 24556666665 9999999999999999999999998 588776432
Q ss_pred -ccCCCEEEEccCcCchhhcC--CCCceeecceEEEEEC-CC-c-----c--eEEEeCC--eEEEEecCCCeEEEcceee
Q psy5261 117 -ESEFDFVFNCAGLGAQALCR--DRKLTPIRGQVIKVWA-PW-L-----S--HFYYLDY--DVYVIPHSNGAVTLGGCRH 182 (267)
Q Consensus 117 -~~~ad~VV~aaG~~s~~l~~--~~~l~p~rg~~~~~~~-p~-~-----~--~~v~~~~--~~y~~p~~~g~l~lGg~~~ 182 (267)
.++||+||+|+|.|+..+++ ..++.|+++|++.+++ +. . . ..+.+.. ..|+++..+|++++|+...
T Consensus 222 g~v~A~~VV~Atga~s~~l~~~~~~~~~p~~~~~~~t~pl~~~~~~~~~~~~~~~~d~~~~~~y~r~~~dgrll~G~~~~ 301 (460)
T TIGR03329 222 GQVTADKVVLALNAWMASHFPQFERSIAIVSSDMVITEPAPDLLAATGLDHGTSVLDSRIFVHYYRSTPDGRLMLGKGGN 301 (460)
T ss_pred cEEECCEEEEcccccccccChhhcCeEEEeccceEecCCCcHHHHhhcCCCCceEecchhhhhheeECCCCcEEEcCCcc
Confidence 36899999999999998876 4578899999888876 21 1 1 1122322 2588888888999997532
Q ss_pred c---CCC-CC--CCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------------eEEEeCCCchhhhccH
Q psy5261 183 Y---DSY-SR--DISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-------------VIHNYGHGGYGVTTAP 243 (267)
Q Consensus 183 ~---~~~-~~--~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~~~G~gg~G~t~a~ 243 (267)
. .+. +. .......+.|.+.+.++||.|.+.++.+.|+|++|+|+| +|+++||+|+|+++|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~t~D~~P~iG~~~~~~gl~~a~G~~G~Gv~~a~ 381 (460)
T TIGR03329 302 TFAYGGRMLPVFNQPSPYEALLTRSLRKFFPALAEVPIAASWNGPSDRSVTGLPFFGRLNGQPNVFYGFGYSGNGVAPSR 381 (460)
T ss_pred ccccCcccccccCCchHHHHHHHHHHHHhCCCcCCCeeeEEEeceeCCCCCCCceeeeecCCCCEEEEeCcCCCChhHHH
Confidence 1 111 11 122334567999999999999999999999999999998 8999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy5261 244 GTSRYAVQLVKQA 256 (267)
Q Consensus 244 ~~a~~la~li~~~ 256 (267)
++|+++|++|.+.
T Consensus 382 ~~G~~lA~li~g~ 394 (460)
T TIGR03329 382 MGGQILSSLVLGL 394 (460)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999874
No 8
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.94 E-value=1.6e-25 Score=202.53 Aligned_cols=204 Identities=14% Similarity=0.071 Sum_probs=162.8
Q ss_pred HhhhCCCcEECChhhhhcC-C----CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------
Q psy5261 52 IENLVPVYRDAQPDELVVG-N----KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------- 116 (267)
Q Consensus 52 ~~~~g~~~~~l~~~el~~~-P----~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------- 116 (267)
+++.|.+.++++++++.++ | +....|++.+. |++||.+++.++.+.+++.|++|+. ++|++++..
T Consensus 107 ~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~ 186 (376)
T PRK11259 107 ARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTT 186 (376)
T ss_pred HHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEe
Confidence 4678999999999999988 8 12345665554 9999999999999999999999997 678877542
Q ss_pred ---ccCCCEEEEccCcCchhhcC--CCCceeecceEEEEECC-C----cceEEE-----eCCeEEEEecCCCe-EEEcce
Q psy5261 117 ---ESEFDFVFNCAGLGAQALCR--DRKLTPIRGQVIKVWAP-W----LSHFYY-----LDYDVYVIPHSNGA-VTLGGC 180 (267)
Q Consensus 117 ---~~~ad~VV~aaG~~s~~l~~--~~~l~p~rg~~~~~~~p-~----~~~~v~-----~~~~~y~~p~~~g~-l~lGg~ 180 (267)
.++||.||+|+|.|+..+++ ++|+.|.|++++.++++ . ...+++ ++...|++|+.+++ +++|++
T Consensus 187 ~~g~~~a~~vV~A~G~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~ 266 (376)
T PRK11259 187 ADGTYEAKKLVVSAGAWVKDLLPPLELPLTPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKH 266 (376)
T ss_pred CCCEEEeeEEEEecCcchhhhcccccCCceEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEEC
Confidence 26899999999999999887 68999999999998863 1 111221 22347888987777 999987
Q ss_pred eecC------CCCCCC-CHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------------eEEEeCCCchhhh
Q psy5261 181 RHYD------SYSRDI-SRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-------------VIHNYGHGGYGVT 240 (267)
Q Consensus 181 ~~~~------~~~~~~-~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~~~G~gg~G~t 240 (267)
.... +.+... +++..+.+.+.+.++||.+.+ +.+.|+|+||++|| +|+++||+|+|++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~~t~D~~P~ig~~~~~~gl~~~~G~~g~G~~ 344 (376)
T PRK11259 267 NGGQEITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP--CLRGAACTYTNTPDEHFIIDTLPGHPNVLVASGCSGHGFK 344 (376)
T ss_pred CCCCCCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc--cccceEEecccCCCCCceeecCCCCCCEEEEecccchhhh
Confidence 6411 111112 256788999999999998876 78899999999998 9999999999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy5261 241 TAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 241 ~a~~~a~~la~li~~~l 257 (267)
++|++|+.+|++|.+.-
T Consensus 345 ~ap~~g~~la~li~~~~ 361 (376)
T PRK11259 345 FASVLGEILADLAQDGT 361 (376)
T ss_pred ccHHHHHHHHHHHhcCC
Confidence 99999999999998753
No 9
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.94 E-value=1e-25 Score=203.31 Aligned_cols=194 Identities=19% Similarity=0.221 Sum_probs=152.1
Q ss_pred hhhCCCcEECChhhhhcC-C----CCceeEEEeee-eeeehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc-------c
Q psy5261 53 ENLVPVYRDAQPDELVVG-N----KTYKYGSYSET-LVIENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL-------E 117 (267)
Q Consensus 53 ~~~g~~~~~l~~~el~~~-P----~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~-------~ 117 (267)
+..+.++++++++|++++ | +.+.+|++++. +++||.+++.+|++.++++ |++|++ ++|++++.. .
T Consensus 104 ~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~ 183 (365)
T TIGR03364 104 EPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD 183 (365)
T ss_pred hhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc
Confidence 455778999999999988 8 24456676665 9999999999999998876 999998 688877432 2
Q ss_pred cCCCEEEEccCcCchhhcC----CCCceeecceEEEEECCC---cceE-------------------------------E
Q psy5261 118 SEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAPW---LSHF-------------------------------Y 159 (267)
Q Consensus 118 ~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p~---~~~~-------------------------------v 159 (267)
++||+||+|+|+|+..|++ ++++.|+|||++.++++. +.+. .
T Consensus 184 i~a~~VV~A~G~~s~~l~~~~~~~~~~~p~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
T TIGR03364 184 VHADQVFVCPGADFETLFPELFAASGVRRCKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPE 263 (365)
T ss_pred EEeCEEEECCCCChhhhCcchhhccCcceEEEEeeeccCCCCCcCCccccccceeeechhHhhCcchHHHHhhhcccCch
Confidence 5799999999999998875 468999999999988631 1100 0
Q ss_pred -Ee-CCeEEEEecCCCeEEEcceeecCCCCCCCCH-HHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC---------
Q psy5261 160 -YL-DYDVYVIPHSNGAVTLGGCRHYDSYSRDISR-HDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL--------- 227 (267)
Q Consensus 160 -~~-~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~-~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd--------- 227 (267)
.+ ....|++|+.+|++++|++.+....+...+. +..+.+.+.+.+++ .+.+.++.+.|+|+||++||
T Consensus 264 ~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~t~d~~~v~~~~~ 342 (365)
T TIGR03364 264 LLEWGIHLMVSQNPDGELIIGDSHEYGLAPDPFDDEEIDNLILAEAKTIL-GLPDLDIVERWQGVYASSPPAPIFLERPD 342 (365)
T ss_pred hhhcCeEEEEEECCCCCEEecCcccccCCCCCcchHHHHHHHHHHHHHhc-CCCCCceEEEEeEEecCCCCCCceecCCC
Confidence 01 1246899999999999999876543333333 34456777777776 68888999999999999998
Q ss_pred --eEEEeCCCchhhhccHHHHH
Q psy5261 228 --VIHNYGHGGYGVTTAPGTSR 247 (267)
Q Consensus 228 --l~~~~G~gg~G~t~a~~~a~ 247 (267)
+|+++||+|+||++||++|+
T Consensus 343 ~g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 343 DGVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred CCeEEEEecCCCcccccccccC
Confidence 99999999999999999986
No 10
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.92 E-value=2e-24 Score=195.88 Aligned_cols=206 Identities=25% Similarity=0.258 Sum_probs=163.8
Q ss_pred hhhCCCcEECChhhhhcC-C---CC-ceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE--EeeCCcccc--------
Q psy5261 53 ENLVPVYRDAQPDELVVG-N---KT-YKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR--GTVSSFSGL-------- 116 (267)
Q Consensus 53 ~~~g~~~~~l~~~el~~~-P---~~-~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~--~~V~~l~~~-------- 116 (267)
+......+.++..++.++ | .. +.+|++++. +++||.+++.+|++.++++|+..+. ++|..++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t 194 (387)
T COG0665 115 EAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVET 194 (387)
T ss_pred HhcCCCceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEe
Confidence 445555578999999988 7 12 345666665 9999999999999999999965544 466665431
Q ss_pred ---ccCCCEEEEccCcCchhhcC-----CCCceeecceEEEEECCC-c-c------eEEEeCCeEEEEecCCCeEEEcce
Q psy5261 117 ---ESEFDFVFNCAGLGAQALCR-----DRKLTPIRGQVIKVWAPW-L-S------HFYYLDYDVYVIPHSNGAVTLGGC 180 (267)
Q Consensus 117 ---~~~ad~VV~aaG~~s~~l~~-----~~~l~p~rg~~~~~~~p~-~-~------~~v~~~~~~y~~p~~~g~l~lGg~ 180 (267)
.++||+||+|+|.|+..+.+ .+++.|+|||++.++++. . . .....+...|++|..++++++|++
T Consensus 195 ~~g~i~a~~vv~a~G~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~ 274 (387)
T COG0665 195 DGGTIEADKVVLAAGAWAGELAATLGELPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGT 274 (387)
T ss_pred CCccEEeCEEEEcCchHHHHHHHhcCCCcCccccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeec
Confidence 25799999999999998863 368999999999999742 1 1 112234678999998889999999
Q ss_pred eecCC-CCCCCCHH--HHHHHHHHHHhhCCCCCCCCceeeeccccCCC-CC-------------eEEEeCCCchhhhccH
Q psy5261 181 RHYDS-YSRDISRH--DTASILERCYSLLPRLEEAPVLYEWCGLRPHR-SL-------------VIHNYGHGGYGVTTAP 243 (267)
Q Consensus 181 ~~~~~-~~~~~~~~--~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~-pd-------------l~~~~G~gg~G~t~a~ 243 (267)
.+... ++.+.... ....+++.+.+++|.+.+..+.+.|+|+||++ || +|+++||||+||+++|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t~pd~~P~iG~~~~~~~l~~a~G~~~~G~~~~p 354 (387)
T COG0665 275 DEEGGDDPSDPEREDLVIAELLRVARALLPGLADAGIEAAWAGLRPPTTPDGLPVIGRAAPLPNLYVATGHGGHGFTLAP 354 (387)
T ss_pred ccccCCCCccccCcchhHHHHHHHHHHhCccccccccceeeeccccCCCCCCCceeCCCCCCCCEEEEecCCCcChhhcc
Confidence 88763 44333333 36789999999999999888899999999987 77 9999999999999999
Q ss_pred HHHHHHHHHHHhhhC
Q psy5261 244 GTSRYAVQLVKQALD 258 (267)
Q Consensus 244 ~~a~~la~li~~~l~ 258 (267)
++|+++|++|.+.-.
T Consensus 355 ~~g~~lA~li~g~~~ 369 (387)
T COG0665 355 ALGRLLADLILGGEP 369 (387)
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999998644
No 11
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.92 E-value=9.1e-25 Score=211.23 Aligned_cols=198 Identities=17% Similarity=0.163 Sum_probs=164.2
Q ss_pred CCcEECChhhhhcC-C-CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------c-cCC
Q psy5261 57 PVYRDAQPDELVVG-N-KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------E-SEF 120 (267)
Q Consensus 57 ~~~~~l~~~el~~~-P-~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~-~~a 120 (267)
..+++++++|+.++ | .....|++++. |++||..++.+|.+.+++ |+++++ ++|++++.. . ++|
T Consensus 374 ~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a 452 (662)
T PRK01747 374 ELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASA 452 (662)
T ss_pred HhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEEC
Confidence 34789999999987 6 23446677765 999999999999999999 999987 688887532 1 369
Q ss_pred CEEEEccCcCchhhcC--CCCceeecceEEEEECCC----cceEEEeCCeEEEEe-cCCCeEEEcceeecCCCCCCCCHH
Q psy5261 121 DFVFNCAGLGAQALCR--DRKLTPIRGQVIKVWAPW----LSHFYYLDYDVYVIP-HSNGAVTLGGCRHYDSYSRDISRH 193 (267)
Q Consensus 121 d~VV~aaG~~s~~l~~--~~~l~p~rg~~~~~~~p~----~~~~v~~~~~~y~~p-~~~g~l~lGg~~~~~~~~~~~~~~ 193 (267)
|.||+|+|.|+..+.+ ++|+.|+|||++.++++. +...+. ...|++| ..+|.+++|++.+.++.+..++.+
T Consensus 453 d~VV~A~G~~s~~l~~~~~lpl~p~RGqv~~~~~~~~~~~~~~~~~--~~~Y~~p~~~~g~~~iGat~~~~~~~~~~~~~ 530 (662)
T PRK01747 453 PVVVLANGHDAARFAQTAHLPLYSVRGQVSHLPTTPALSALKQVLC--YDGYLTPQPANGTHCIGASYDRDDTDTAFREA 530 (662)
T ss_pred CEEEECCCCCccccccccCCCcccccceEEeecCCccccccCceeE--CCceeCCCCCCCceEeCcccCCCCCCCCCCHH
Confidence 9999999999998876 689999999999887532 122222 2469999 778899999999887777788889
Q ss_pred HHHHHHHHHHhhCCCC-----CCCCceeeeccccCCCCC-----------------------------------eEEEeC
Q psy5261 194 DTASILERCYSLLPRL-----EEAPVLYEWCGLRPHRSL-----------------------------------VIHNYG 233 (267)
Q Consensus 194 ~~~~l~~~~~~~~P~l-----~~~~~~~~w~G~rp~~pd-----------------------------------l~~~~G 233 (267)
..+.+++.+.+++|.+ .+.++...|+|+||+||| +|+++|
T Consensus 531 ~~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~gl~v~~G 610 (662)
T PRK01747 531 DHQENLERLAECLPQALWAKEVDVSALQGRVGFRCASRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRLPGLYVAGA 610 (662)
T ss_pred HHHHHHHHHHHhCCCchhhhccCccccCceEEEeccCCCcccccCCCCCHHHHHHHHHhhhhccccccCCCCCCeEEEec
Confidence 9999999999999987 466788999999999887 489999
Q ss_pred CCchhhhccHHHHHHHHHHHHhhh
Q psy5261 234 HGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 234 ~gg~G~t~a~~~a~~la~li~~~l 257 (267)
|||+|+++||++|+++|++|.+.-
T Consensus 611 ~gs~Gl~~ap~~a~~lA~li~g~~ 634 (662)
T PRK01747 611 LGSRGLCSAPLGAELLASQIEGEP 634 (662)
T ss_pred ccccHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999998753
No 12
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.92 E-value=1.1e-24 Score=194.49 Aligned_cols=198 Identities=28% Similarity=0.400 Sum_probs=157.4
Q ss_pred hHhhhCCCcEECChhhhhcC-C---CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-N---KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P---~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------- 116 (267)
.+++.+.+++.+++++++++ | +....|++++. +++||.+++.+|++.++++|++|+. ++|+++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~ 184 (358)
T PF01266_consen 105 RLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVR 184 (358)
T ss_dssp HHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEE
T ss_pred ccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhccccccccc
Confidence 45778899999999999987 7 24456766665 8999999999999999999999999 599888642
Q ss_pred ----ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEECCC--cceEE-E------eCCeEEEEecCCCeEEEcc
Q psy5261 117 ----ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAPW--LSHFY-Y------LDYDVYVIPHSNGAVTLGG 179 (267)
Q Consensus 117 ----~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p~--~~~~v-~------~~~~~y~~p~~~g~l~lGg 179 (267)
.++||.||||+|+|+..|++ +.++.|++|+++.+++.. ....+ . +....|++|+. |.+.+|.
T Consensus 185 ~~~g~i~ad~vV~a~G~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~ig~ 263 (358)
T PF01266_consen 185 TSDGEIRADRVVLAAGAWSPQLLPLLGLDLPLRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIRPRP-GGVLIGT 263 (358)
T ss_dssp ETTEEEEECEEEE--GGGHHHHHHTTTTSSTEEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEEEET-TEEEEEE
T ss_pred ccccccccceeEecccccceeeeecccccccccccceEEEEEccCCcccccccccccccccccccceecccc-ccccccc
Confidence 26799999999999999765 348999999999999732 21222 1 22578899988 6888983
Q ss_pred eeecCCCCCC------------CCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------------eEEEeCC
Q psy5261 180 CRHYDSYSRD------------ISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-------------VIHNYGH 234 (267)
Q Consensus 180 ~~~~~~~~~~------------~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~~~G~ 234 (267)
+. ..++.. .+.+ ++.+++.+.+++|.+.+.++.+.|+|+||+++| +|+++||
T Consensus 264 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t~d~~p~ig~~~~~~~l~~~~g~ 340 (358)
T PF01266_consen 264 AD--GNYDPGPSPEDSSGEDPDVDEE-IDELLERLARLLPGLGDAEVVRSWAGIRPFTPDGRPIIGELPGSPNLYLAGGH 340 (358)
T ss_dssp SE--CEEEESSSHHHHSHHHHHHHHH-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEETTSECEEEEESSEEEEEEEECE
T ss_pred cc--ccccccccccccccccccccHH-HHHhHHHHHHHHHHhhhccccccccceeeeccCCCeeeeecCCCCCEEEEECC
Confidence 32 111111 2223 678999999999999999999999999999998 9999999
Q ss_pred CchhhhccHHHHHHHHHH
Q psy5261 235 GGYGVTTAPGTSRYAVQL 252 (267)
Q Consensus 235 gg~G~t~a~~~a~~la~l 252 (267)
+|+|++++|++|+++|++
T Consensus 341 ~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 341 GGHGFTLAPGLAELLADL 358 (358)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcC
Confidence 999999999999999986
No 13
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.92 E-value=1.1e-23 Score=190.92 Aligned_cols=206 Identities=15% Similarity=0.100 Sum_probs=159.5
Q ss_pred hHhhhCCCcEECChhhhhcC-CC----CceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-NK----TYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P~----~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------- 116 (267)
.+++.|.++++++++|+.++ |. ....|++.+. +++||.+++.+|.+.++++|++++. ++|++++..
T Consensus 102 ~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~ 181 (380)
T TIGR01377 102 TLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVK 181 (380)
T ss_pred HHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEE
Confidence 45778999999999999988 81 2234655554 9999999999999999999999988 578877542
Q ss_pred ----ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEECCC---------cceEEEe--CCeEEEEecCC-CeEE
Q psy5261 117 ----ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAPW---------LSHFYYL--DYDVYVIPHSN-GAVT 176 (267)
Q Consensus 117 ----~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p~---------~~~~v~~--~~~~y~~p~~~-g~l~ 176 (267)
.++||.||+|+|.|+..|.+ ++|+.|.|+|+..++.+. .+..+.. ..+.|++|..+ +.++
T Consensus 182 ~~~~~i~a~~vV~aaG~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~~~~~~ 261 (380)
T TIGR01377 182 TTKGSYQANKLVVTAGAWTSKLLSPLGIEIPLQPLRINVCYWREKEPGSYGVSQAFPCFLVLGLNPHIYGLPSFEYPGLM 261 (380)
T ss_pred eCCCEEEeCEEEEecCcchHHHhhhcccCCCceEEEEEEEEEecCCccccCccCCCCEEEEeCCCCceEecCCCCCCceE
Confidence 25899999999999988865 578999999988776421 1111212 13578888754 3456
Q ss_pred Ecceeec-------CCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------------eEEEeCCCc
Q psy5261 177 LGGCRHY-------DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-------------VIHNYGHGG 236 (267)
Q Consensus 177 lGg~~~~-------~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~~~G~gg 236 (267)
+++.... .+++..++.+..+.+.+.+.+++|.+.... ...|.|+||+||| +|+++||+|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~~~t~D~~piIg~~p~~~~l~va~G~~g 340 (380)
T TIGR01377 262 KVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDHLPGLNGEP-KKGEVCMYTNTPDEHFVIDLHPKYDNVVIGAGFSG 340 (380)
T ss_pred EEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHHCCCCCCCc-ceeeEEEeccCCCCCeeeecCCCCCCEEEEecCCc
Confidence 6543211 123344677889999999999999998543 5779999999998 999999999
Q ss_pred hhhhccHHHHHHHHHHHHhhh
Q psy5261 237 YGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 237 ~G~t~a~~~a~~la~li~~~l 257 (267)
+||+++|++|+++|++|.+.-
T Consensus 341 ~G~~~~p~~g~~la~li~~~~ 361 (380)
T TIGR01377 341 HGFKLAPVVGKILAELAMKLK 361 (380)
T ss_pred cceeccHHHHHHHHHHHhcCC
Confidence 999999999999999998753
No 14
>KOG2844|consensus
Probab=99.91 E-value=1.4e-23 Score=193.26 Aligned_cols=227 Identities=16% Similarity=0.127 Sum_probs=184.9
Q ss_pred cCCCCceE---EEEEe-eEeccCCc--hhH-------hhhCCCcEECChhhhhcC-C----CCceeEEEeee-eeeehHH
Q psy5261 29 SADGSTGK---AMIST-YQTSLLKN--ASI-------ENLVPVYRDAQPDELVVG-N----KTYKYGSYSET-LVIENSD 89 (267)
Q Consensus 29 ~~~~~~g~---~~~~g-~~~~~~~~--~~~-------~~~g~~~~~l~~~el~~~-P----~~~~~g~~~~~-~~vdp~~ 89 (267)
++.+++|+ ++++| +.+.++.. ..+ ..+|.+.++|+++|++++ | +++.+|++.+. |++||..
T Consensus 109 ~leeEtgl~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~ 188 (856)
T KOG2844|consen 109 ELEEETGLHTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAG 188 (856)
T ss_pred HHHHhcCCCcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHH
Confidence 56688888 57888 47777742 122 457899999999999998 8 45667766654 9999999
Q ss_pred HHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEEC
Q psy5261 90 FLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWA 152 (267)
Q Consensus 90 ~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~ 152 (267)
+|++|+..|++.|+.+++ ++|++|... .+++..||||||.|++.+.. +.|+.|+..+++.+++
T Consensus 189 lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H~YvvT~~ 268 (856)
T KOG2844|consen 189 LCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVWAREVGAMAGVKVPLVPMHHAYVVTSR 268 (856)
T ss_pred HHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcceecceEEechhHHHHHhhhhcCCcccceeeeeeEEEecc
Confidence 999999999999999998 699988532 37999999999999998864 7899999999999986
Q ss_pred -CCcc---e-EEEe-CCeEEEEecCCCeEEEcceeecCC--------C---CCCCCHHHHHHHHHHHHhhCCCCCCCCce
Q psy5261 153 -PWLS---H-FYYL-DYDVYVIPHSNGAVTLGGCRHYDS--------Y---SRDISRHDTASILERCYSLLPRLEEAPVL 215 (267)
Q Consensus 153 -p~~~---~-~v~~-~~~~y~~p~~~g~l~lGg~~~~~~--------~---~~~~~~~~~~~l~~~~~~~~P~l~~~~~~ 215 (267)
+.+. . .++| +...|++...+ .+..||.....- + -.++|.+.+...++.+.+++|.|.++.+.
T Consensus 269 IeGi~s~t~p~irD~DgSvylR~~~~-gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~r~P~l~k~~i~ 347 (856)
T KOG2844|consen 269 IEGVSSLTRPNIRDLDGSVYLRQQGD-GILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIERVPVLEKAGIK 347 (856)
T ss_pred cCCccCCCccceecccceEEEEecCC-ceeccccccCceeccccCCccccccccccHhhhHHHHHHHHHhCchhhhcCcc
Confidence 5432 2 3444 45677777766 677888753210 0 01378899999999999999999999999
Q ss_pred eeeccccCCCCC-------------eEEEeCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 216 YEWCGLRPHRSL-------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 216 ~~w~G~rp~~pd-------------l~~~~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
+.-+|.-.+||| +|+++|+++.|+.++-|+|+.++++|...
T Consensus 348 ~~v~gpe~ftPD~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g 401 (856)
T KOG2844|consen 348 SLVNGPETFTPDHLPIMGESPEVRGYWVACGFNSAGLSFGGGCGKYLAEWIIHG 401 (856)
T ss_pred ceecCccccCCccccccCCCccccceEEeecCCccceeccCchhHHHHHHhhcC
Confidence 999999999999 99999999999999999999999999754
No 15
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.90 E-value=2.4e-22 Score=190.23 Aligned_cols=203 Identities=15% Similarity=0.160 Sum_probs=160.3
Q ss_pred HhhhCCCcEECChhhhhcC-C---CCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------
Q psy5261 52 IENLVPVYRDAQPDELVVG-N---KTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------- 116 (267)
Q Consensus 52 ~~~~g~~~~~l~~~el~~~-P---~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------- 116 (267)
.+..|+++++++++|+.++ | +++.+|++++++++||.+++.+++..++++|++|++ ++|+++...
T Consensus 109 ~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~ 188 (546)
T PRK11101 109 CEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVR 188 (546)
T ss_pred HHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEE
Confidence 3567889999999999998 8 245677777789999999999999999999999987 688776321
Q ss_pred --------ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEECCCcceEEE----eCCeEEEEecCCCeEEEcce
Q psy5261 117 --------ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAPWLSHFYY----LDYDVYVIPHSNGAVTLGGC 180 (267)
Q Consensus 117 --------~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p~~~~~v~----~~~~~y~~p~~~g~l~lGg~ 180 (267)
.++|++||||||+|+..|.. +.|+.|.||+++.++.+.....+. .....+++|. ++.+++|.|
T Consensus 189 d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~i~p~kG~~lv~~~~~~~~vi~~~~~~~~~~~~vp~-~~~~liGtT 267 (546)
T PRK11101 189 DHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINNHVINRCRKPADADILVPG-DTISLIGTT 267 (546)
T ss_pred EcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCceeecceEEEEECCccCceeEeccCCCCCCCEEEec-CCEEEEeeC
Confidence 25799999999999998864 689999999999997632111121 1133466674 557889998
Q ss_pred eecCCC----CCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCC--C------------------------eEE
Q psy5261 181 RHYDSY----SRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRS--L------------------------VIH 230 (267)
Q Consensus 181 ~~~~~~----~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~p--d------------------------l~~ 230 (267)
.+..++ +..++++.++.|++.+.+++|.|...++++.|+|+||... + ++.
T Consensus 268 ~~~~~~~~~~~~~~t~~~i~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~ 347 (546)
T PRK11101 268 STRIDYDQIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFIT 347 (546)
T ss_pred CCCccCCCcCCCCCCHHHHHHHHHHHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEE
Confidence 765332 2568899999999999999999999999999999999732 1 455
Q ss_pred EeCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 231 NYGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 231 ~~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
++| ..+|.++.+|+.+++++...++
T Consensus 348 i~G---Gkltt~r~~Ae~v~d~v~~~l~ 372 (546)
T PRK11101 348 ITG---GKLMTYRLMAEWATDAVCRKLG 372 (546)
T ss_pred EEC---ChHHHHHHHHHHHHHHHHHhcC
Confidence 555 3499999999999999998875
No 16
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.90 E-value=1.2e-22 Score=191.31 Aligned_cols=202 Identities=15% Similarity=0.173 Sum_probs=160.5
Q ss_pred hhhCCCcEECChhhhhcC-C---CCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------
Q psy5261 53 ENLVPVYRDAQPDELVVG-N---KTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------- 116 (267)
Q Consensus 53 ~~~g~~~~~l~~~el~~~-P---~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------- 116 (267)
++.|+++++++++|+.++ | +++.+|++++++++||.+++.++++.++++|++|++ ++|++++..
T Consensus 89 ~~~gi~~~~l~~~e~~~~~P~l~~~~~ga~~~~dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~ 168 (516)
T TIGR03377 89 REAGIPAEEIDPAEALRLEPNLNPDLIGAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVED 168 (516)
T ss_pred HHCCCCceEECHHHHHHHCCCCChhheEEEEeCCcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEE
Confidence 567889999999999998 8 245567777789999999999999999999999987 577776421
Q ss_pred -------ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEECCCcceE---EE-eCCeEEEEecCCCeEEEccee
Q psy5261 117 -------ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAPWLSHF---YY-LDYDVYVIPHSNGAVTLGGCR 181 (267)
Q Consensus 117 -------~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p~~~~~---v~-~~~~~y~~p~~~g~l~lGg~~ 181 (267)
.++|+.||||||+|+..|.. +.++.|.||+++.++.+..... +. ..++.|++|. ++.+++|.+.
T Consensus 169 ~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~g~~~~P~-~~~~liGtT~ 247 (516)
T TIGR03377 169 HKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIRMFPAKGALLIMNHRINNTVINRCRKPSDADILVPG-DTISIIGTTS 247 (516)
T ss_pred cCCCcEEEEEcCEEEECCCcchHHHHHhcCCCCceecceEEEEEECCcccccccccccCCCCCcEEEEC-CCeEEEecCC
Confidence 25799999999999999864 6889999999999975321111 11 2244688886 5588899887
Q ss_pred ecC--CCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCC------------C--------------eEEEeC
Q psy5261 182 HYD--SYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRS------------L--------------VIHNYG 233 (267)
Q Consensus 182 ~~~--~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~p------------d--------------l~~~~G 233 (267)
+.. ..+..++.+.++.+++.+.++||.+...++.+.|+|+||... | ++.++|
T Consensus 248 ~~~~~~~~~~~~~~~v~~ll~~~~~~~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~G 327 (516)
T TIGR03377 248 ERIDDPDDLPVTQEEVDVLLREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITG 327 (516)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEec
Confidence 653 234568899999999999999999999999999999999652 1 233333
Q ss_pred CCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 234 HGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 234 ~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
| .+|.++.+|+.+++++...++
T Consensus 328 --G-kltt~r~~Ae~~~d~~~~~l~ 349 (516)
T TIGR03377 328 --G-KLTTYRLMAEWATDVVCKKLG 349 (516)
T ss_pred --c-hHHHHHHHHHHHHHHHHHHcC
Confidence 3 499999999999999998875
No 17
>KOG2853|consensus
Probab=99.88 E-value=4.6e-22 Score=171.14 Aligned_cols=219 Identities=20% Similarity=0.239 Sum_probs=168.8
Q ss_pred EEEee-EeccCCc-h-------hHhhhCCCcEECChhhhhcC-C----CCceeEE-Eee-eeeeehHHHHHHHHHHHHhC
Q psy5261 38 MISTY-QTSLLKN-A-------SIENLVPVYRDAQPDELVVG-N----KTYKYGS-YSE-TLVIENSDFLPWAMKRVSKQ 101 (267)
Q Consensus 38 ~~~g~-~~~~~~~-~-------~~~~~g~~~~~l~~~el~~~-P----~~~~~g~-~~~-~~~vdp~~~~~~L~~~~~~~ 101 (267)
.-+|| .+..+.+ + ...+.|...++|+++++.++ | +++.-|. -.. .|++||..++.++.+.+...
T Consensus 177 ~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~LLs~~rrk~~~l 256 (509)
T KOG2853|consen 177 FPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWALLSGIRRKAITL 256 (509)
T ss_pred CCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCHHHHHHHHHHHhhhh
Confidence 35788 6655431 1 23689999999999999999 9 3443332 233 49999999999999999999
Q ss_pred CcEEEEEeeCCcccc----------------------------------ccCCCEEEEccCcCchhhcC-----------
Q psy5261 102 GGKFRRGTVSSFSGL----------------------------------ESEFDFVFNCAGLGAQALCR----------- 136 (267)
Q Consensus 102 G~~~~~~~V~~l~~~----------------------------------~~~ad~VV~aaG~~s~~l~~----------- 136 (267)
|+.|...+|++++.. .++++.+|||+|+|+.++++
T Consensus 257 Gv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvArlAgIG~g~g~L 336 (509)
T KOG2853|consen 257 GVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVARLAGIGKGPGLL 336 (509)
T ss_pred cceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHHHhccCCCCcee
Confidence 999988888776421 15789999999999998753
Q ss_pred --CCCceeecceEEEEECC---CcceE-EEeCCeEEEEecC-CCeEEEccee-e---cCCCCCCCCHHHH-HHHHHHHHh
Q psy5261 137 --DRKLTPIRGQVIKVWAP---WLSHF-YYLDYDVYVIPHS-NGAVTLGGCR-H---YDSYSRDISRHDT-ASILERCYS 204 (267)
Q Consensus 137 --~~~l~p~rg~~~~~~~p---~~~~~-v~~~~~~y~~p~~-~g~l~lGg~~-~---~~~~~~~~~~~~~-~~l~~~~~~ 204 (267)
.+|+.|.|-|+..+..| .+..+ ++|+++.|++... +++++.|-+. + ++..+.++|.+.+ +.++..+..
T Consensus 337 ~vplPiepRKRyvyvi~~~~~PGl~~Pl~iDpsG~f~Rrdglg~nfl~grsp~ed~~~d~~nldVD~d~F~qkiwP~L~n 416 (509)
T KOG2853|consen 337 AVPLPIEPRKRYVYVIFAPDVPGLDTPLTIDPSGVFFRRDGLGGNFLCGRSPSEDEEPDHSNLDVDHDYFYQKIWPHLAN 416 (509)
T ss_pred eecccCCccceeEEEEeCCCCCCCCCceeECCCccEEEecCCCCceecccCCccccCCCccccccChHHHHhhhhHHHHh
Confidence 48999999999888764 44444 4477788888775 5566665441 1 1123355776665 479999999
Q ss_pred hCCCCCCCCceeeeccccCCCC-C-------------eEEEeCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 205 LLPRLEEAPVLYEWCGLRPHRS-L-------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 205 ~~P~l~~~~~~~~w~G~rp~~p-d-------------l~~~~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
..|.+..+++...|+|++...- | +|+++|+||||+..+|++|+.+|++|.+.
T Consensus 417 RVP~fetakVqsaWaGyyD~NtfD~ngViG~HP~y~Nly~atGFsghGvqqs~avgRAiaElIldG 482 (509)
T KOG2853|consen 417 RVPAFETAKVQSAWAGYYDHNTFDDNGVIGEHPLYTNLYMATGFSGHGVQQSPAVGRAIAELILDG 482 (509)
T ss_pred cccccceeeeeehhcccccccccccCCcccCCcceeeeeeeecccccchhcchHHHHHHHHHHhcC
Confidence 9999999999999999987632 2 99999999999999999999999999753
No 18
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.87 E-value=2.4e-21 Score=176.62 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=158.3
Q ss_pred HhhhCCCcEECChhhhhcC-CCCc--eeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------
Q psy5261 52 IENLVPVYRDAQPDELVVG-NKTY--KYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------- 116 (267)
Q Consensus 52 ~~~~g~~~~~l~~~el~~~-P~~~--~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------- 116 (267)
.++.|.++++++++|++++ | .+ ..|++++. +++||..++.+|.+.++++|++++. ++|.+++..
T Consensus 110 ~~~~g~~~~~l~~~el~~~~P-~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~ 188 (393)
T PRK11728 110 ARANGIEVERLDAEELREREP-NIRGLGAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQ 188 (393)
T ss_pred HHHCCCcEEEeCHHHHHHhCC-CccccceEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECC
Confidence 3567888999999999999 8 32 35666665 9999999999999999999999987 577776432
Q ss_pred -ccCCCEEEEccCcCchhhcC------CCCceeecceEEEEECC---CcceEEE---e----CCeEEEEecCCCeEEEcc
Q psy5261 117 -ESEFDFVFNCAGLGAQALCR------DRKLTPIRGQVIKVWAP---WLSHFYY---L----DYDVYVIPHSNGAVTLGG 179 (267)
Q Consensus 117 -~~~ad~VV~aaG~~s~~l~~------~~~l~p~rg~~~~~~~p---~~~~~v~---~----~~~~y~~p~~~g~l~lGg 179 (267)
.++||.||+|+|.|+..+.+ +.++.|+|||++.+..+ .+++.++ + ..+.|++|+.+|++++|+
T Consensus 189 g~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~ 268 (393)
T PRK11728 189 GEYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGP 268 (393)
T ss_pred CEEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEeccccccccCCceecCCCCCCCcceEEeecCCCCCEEECC
Confidence 25799999999999987753 47889999999999752 2333333 1 246799999999999997
Q ss_pred eeec----CCCCCC-C---------------------CHHHHHHH---------HHHHHhhCCCCCCCCceeeeccccC-
Q psy5261 180 CRHY----DSYSRD-I---------------------SRHDTASI---------LERCYSLLPRLEEAPVLYEWCGLRP- 223 (267)
Q Consensus 180 ~~~~----~~~~~~-~---------------------~~~~~~~l---------~~~~~~~~P~l~~~~~~~~w~G~rp- 223 (267)
+... .+++.. . +.+.++++ ++.+.+++|.|...++.+.|+|+||
T Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~ 348 (393)
T PRK11728 269 NAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQ 348 (393)
T ss_pred CcceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHHHcccCCCceeee
Confidence 4322 233322 2 34445555 5899999999999999999999999
Q ss_pred -CCCC--------------eEEEeCCCchhhhccHHHHHHHHHHH
Q psy5261 224 -HRSL--------------VIHNYGHGGYGVTTAPGTSRYAVQLV 253 (267)
Q Consensus 224 -~~pd--------------l~~~~G~gg~G~t~a~~~a~~la~li 253 (267)
.+|| .+++.|.-+.|+|.|+++|+.+++++
T Consensus 349 ~~~~d~~~~~d~~i~~~~~~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 349 AVSRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred eeCCCCCccCceEEecCCCEEEEcCCCCchHHccHHHHHHHHhhC
Confidence 7776 77889999999999999999998863
No 19
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.87 E-value=5.1e-21 Score=179.68 Aligned_cols=199 Identities=14% Similarity=0.157 Sum_probs=156.0
Q ss_pred CcEECChhhhhcC-C--CCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------c
Q psy5261 58 VYRDAQPDELVVG-N--KTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------E 117 (267)
Q Consensus 58 ~~~~l~~~el~~~-P--~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~ 117 (267)
+.+.++.+++.+. | +.+.+++.+.++++||.+++.+++..++++|++|+. ++|++++.. .
T Consensus 122 ~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~ 201 (502)
T PRK13369 122 GTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRT 201 (502)
T ss_pred cceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEE
Confidence 4677787777655 4 245567777779999999999999999999999998 588776421 1
Q ss_pred cCCCEEEEccCcCchhhcC-------CCCceeecceEEEEECCCc-c-eEEE---eCCeEEEEecCCCeEEEcceeecC-
Q psy5261 118 SEFDFVFNCAGLGAQALCR-------DRKLTPIRGQVIKVWAPWL-S-HFYY---LDYDVYVIPHSNGAVTLGGCRHYD- 184 (267)
Q Consensus 118 ~~ad~VV~aaG~~s~~l~~-------~~~l~p~rg~~~~~~~p~~-~-~~v~---~~~~~y~~p~~~g~l~lGg~~~~~- 184 (267)
++|+.||||+|+|+..+.+ +.++.|.||+++.++.+.. . ..+. +....|++|..++.+++|++....
T Consensus 202 i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~kG~~lv~~~~~~~~~~~~~~~~dgr~~~i~P~~~~~~liGtTd~~~~ 281 (502)
T PRK13369 202 VRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVKGSHIVVPKFWDGAQAYLFQNPDKRVIFANPYEGDFTLIGTTDIAYE 281 (502)
T ss_pred EEecEEEECCCccHHHHHhhccCCCCCcceEEeeEEEEEeCCccCCCceEEEeCCCCeEEEEEEecCCEEEEEecCcccc
Confidence 6899999999999998854 2468999999999875321 1 1222 223468999977788889987542
Q ss_pred -C-CCCCCCHHHHHHHHHHHHhhCC-CCCCCCceeeeccccCCCCC------------------------eEEEeCCCch
Q psy5261 185 -S-YSRDISRHDTASILERCYSLLP-RLEEAPVLYEWCGLRPHRSL------------------------VIHNYGHGGY 237 (267)
Q Consensus 185 -~-~~~~~~~~~~~~l~~~~~~~~P-~l~~~~~~~~w~G~rp~~pd------------------------l~~~~G~gg~ 237 (267)
+ ++..+++++++.|++.+.++|| .+...++...|+|+||.++| ++.++| .
T Consensus 282 ~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~G---g 358 (502)
T PRK13369 282 GDPEDVAADEEEIDYLLDAANRYFKEKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFG---G 358 (502)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCCCHhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeC---C
Confidence 2 4677899999999999999997 89888999999999999853 344454 5
Q ss_pred hhhccHHHHHHHHHHHHhhhCC
Q psy5261 238 GVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 238 G~t~a~~~a~~la~li~~~l~~ 259 (267)
+||.++.+|+.+++.+...++.
T Consensus 359 k~Tt~r~~Ae~v~d~~~~~l~~ 380 (502)
T PRK13369 359 KITTFRKLAEHALERLKPFFPQ 380 (502)
T ss_pred hHhhHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999988764
No 20
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.86 E-value=1e-20 Score=181.34 Aligned_cols=198 Identities=18% Similarity=0.133 Sum_probs=155.5
Q ss_pred CcEECChhhhhcC-C---CC-----ceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc----c-------
Q psy5261 58 VYRDAQPDELVVG-N---KT-----YKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG----L------- 116 (267)
Q Consensus 58 ~~~~l~~~el~~~-P---~~-----~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~----~------- 116 (267)
..++++++|+.++ | .. +.+++.+.++++||.+++.+|++.++++|+++++ ++|+++.. .
T Consensus 193 ~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v 272 (627)
T PLN02464 193 LSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARV 272 (627)
T ss_pred CceEECHHHHHHhCCCCCccccccceeEEEEecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEE
Confidence 4689999999998 8 23 4556666679999999999999999999999988 57776531 1
Q ss_pred ---------ccCCCEEEEccCcCchhhcC------CCCceeecceEEEEEC---CCcceEEE----eCCeEEEEecCCCe
Q psy5261 117 ---------ESEFDFVFNCAGLGAQALCR------DRKLTPIRGQVIKVWA---PWLSHFYY----LDYDVYVIPHSNGA 174 (267)
Q Consensus 117 ---------~~~ad~VV~aaG~~s~~l~~------~~~l~p~rg~~~~~~~---p~~~~~v~----~~~~~y~~p~~~g~ 174 (267)
.++||.||||+|+|+..|.. ..++.|.||+++.++. |.....++ ++...|++|. +|.
T Consensus 273 ~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~hlvl~~~~~~~~~~~i~~~~~dgr~~~~~P~-~g~ 351 (627)
T PLN02464 273 RDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGR 351 (627)
T ss_pred EECCCCcEEEEEeCEEEECCCHhHHHHHHhccCcCCCceEeeeeEEEecccccCCCCceEEecCCCCCCEEEEEec-CCc
Confidence 14899999999999998864 2359999999998864 32212232 2356899999 778
Q ss_pred EEEcceeecC--CCCCCCCHHHHHHHHHHHHhhCC-CCCCCCceeeeccccCCCCC-------------eEEEeCCC---
Q psy5261 175 VTLGGCRHYD--SYSRDISRHDTASILERCYSLLP-RLEEAPVLYEWCGLRPHRSL-------------VIHNYGHG--- 235 (267)
Q Consensus 175 l~lGg~~~~~--~~~~~~~~~~~~~l~~~~~~~~P-~l~~~~~~~~w~G~rp~~pd-------------l~~~~G~g--- 235 (267)
+++|+|.++. +.+..+++++++.|++.+.++|| .+....+...|+|+||.++| ++...|||
T Consensus 352 ~liGtTd~~~~~~~~~~~t~~ei~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~~gli~ 431 (627)
T PLN02464 352 TVAGTTDSKTPITMLPEPHEDEIQFILDAISDYLNVKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEPDGLVT 431 (627)
T ss_pred EEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEecCCCeEE
Confidence 9999988763 34566788999999999999999 78888899999999999865 55555554
Q ss_pred --chhhhccHHHHHHHHHHHHhh
Q psy5261 236 --GYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 236 --g~G~t~a~~~a~~la~li~~~ 256 (267)
|.-||.+..+|+.+.+.+...
T Consensus 432 i~GGk~Tt~R~mAe~~~d~~~~~ 454 (627)
T PLN02464 432 ITGGKWTTYRSMAEDAVDAAIKS 454 (627)
T ss_pred EECChHHHHHHHHHHHHHHHHHh
Confidence 344888999999999988763
No 21
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.80 E-value=2.3e-18 Score=161.83 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=144.7
Q ss_pred CceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCchhh
Q psy5261 73 TYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 73 ~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~~l 134 (267)
++.+|+.+.++++||.+++.++++.++++|+++++ ++|+++... .++|+.||||+|+|+..+
T Consensus 140 ~l~g~~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 140 EITRGFEYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred hhcEEEEEcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence 56677778889999999999999999999999988 588776421 258999999999999887
Q ss_pred cC-------CCCceeecceEEEEECCC--cceEEE---eCCeEEEEecCCCeEEEcceeecC---CCCCCCCHHHHHHHH
Q psy5261 135 CR-------DRKLTPIRGQVIKVWAPW--LSHFYY---LDYDVYVIPHSNGAVTLGGCRHYD---SYSRDISRHDTASIL 199 (267)
Q Consensus 135 ~~-------~~~l~p~rg~~~~~~~p~--~~~~v~---~~~~~y~~p~~~g~l~lGg~~~~~---~~~~~~~~~~~~~l~ 199 (267)
.+ +.++.|.||+++.++... ....++ +....|++|..+|..++|.+.+.. ..+..++++.++.|+
T Consensus 220 ~~~~~g~~~~~~i~p~kG~~lvl~~~~~~~~~~~~~~~dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll 299 (508)
T PRK12266 220 LDDGLGLPSPYGIRLVKGSHIVVPRLFDHDQAYILQNPDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEEIDYLC 299 (508)
T ss_pred HhhccCCCCCcceeeeeeEEEEECCcCCCCcEEEEeCCCCCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHHHHHHH
Confidence 43 347999999999886421 111222 224567889877789999886542 235568899999999
Q ss_pred HHHHhhCC-CCCCCCceeeeccccCCCCC-------------e-----------EEEeCCCchhhhccHHHHHHHHHHHH
Q psy5261 200 ERCYSLLP-RLEEAPVLYEWCGLRPHRSL-------------V-----------IHNYGHGGYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 200 ~~~~~~~P-~l~~~~~~~~w~G~rp~~pd-------------l-----------~~~~G~gg~G~t~a~~~a~~la~li~ 254 (267)
+.+.++|| .+...++.+.|+|+||.++| + +..+ |..||.++.+|+.+++.+.
T Consensus 300 ~~~~~~~p~~l~~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~---Ggk~Tt~r~mAe~~~~~~~ 376 (508)
T PRK12266 300 KVVNRYFKKQLTPADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVF---GGKITTYRKLAEHALEKLA 376 (508)
T ss_pred HHHHHhcCCCCCHHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEE---cChHHHHHHHHHHHHHHHH
Confidence 99999996 78888999999999999865 2 2223 3569999999999999999
Q ss_pred hhhCC
Q psy5261 255 QALDP 259 (267)
Q Consensus 255 ~~l~~ 259 (267)
..|+.
T Consensus 377 ~~l~~ 381 (508)
T PRK12266 377 PYLPQ 381 (508)
T ss_pred HhcCC
Confidence 88764
No 22
>KOG2820|consensus
Probab=99.78 E-value=2.8e-18 Score=147.71 Aligned_cols=234 Identities=13% Similarity=0.031 Sum_probs=162.9
Q ss_pred ehhccCCCCceEEEEEee-EeccC-Cc--------hhHhhhCCCcEECChhhhhcC-CCC--c---eeEE-Eeeeeeeeh
Q psy5261 25 QTKFSADGSTGKAMISTY-QTSLL-KN--------ASIENLVPVYRDAQPDELVVG-NKT--Y---KYGS-YSETLVIEN 87 (267)
Q Consensus 25 ~~~~~~~~~~g~~~~~g~-~~~~~-~~--------~~~~~~g~~~~~l~~~el~~~-P~~--~---~~g~-~~~~~~vdp 87 (267)
+.+.++..+.|..+-+|. .+... ++ .-.+..+...+.++.+|++++ |.. + ..|+ .+..|++|+
T Consensus 73 e~W~~~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a 152 (399)
T KOG2820|consen 73 EKWRNLPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINA 152 (399)
T ss_pred HHHHhChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeH
Confidence 555666677787777776 34333 21 123667889999999999998 821 1 2343 334599999
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc----c-----------ccCCCEEEEccCcCchhhcC-----CCCceeecce
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG----L-----------ESEFDFVFNCAGLGAQALCR-----DRKLTPIRGQ 146 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~----~-----------~~~ad~VV~aaG~~s~~l~~-----~~~l~p~rg~ 146 (267)
.+.+.++...+++.|+.|+. .+|..++. . ...|+.+|+++|+|..+|++ +.|+.|++-.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~i~lt 232 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAPIQLT 232 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccceeEee
Confidence 99999999999999999998 46665541 1 15799999999999999987 4778777654
Q ss_pred EEEEECCCcceE--EEeCCeEEEEecC-CC-eEEEccee-----------ecC------CCC---CCCCHHHHHHHHHHH
Q psy5261 147 VIKVWAPWLSHF--YYLDYDVYVIPHS-NG-AVTLGGCR-----------HYD------SYS---RDISRHDTASILERC 202 (267)
Q Consensus 147 ~~~~~~p~~~~~--v~~~~~~y~~p~~-~g-~l~lGg~~-----------~~~------~~~---~~~~~~~~~~l~~~~ 202 (267)
+.-.+.- .+++ +.++...|++|.. +. .++.|-.. ..+ +.+ ..+....++-..+..
T Consensus 233 vcywk~~-~~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~ 311 (399)
T KOG2820|consen 233 VCYWKTK-KNMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFL 311 (399)
T ss_pred hhhheee-cCCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHH
Confidence 4333321 1111 2233445555542 32 23333110 001 011 123344566677777
Q ss_pred HhhCCCCCCCCceeeeccccCCCCC-------------eEEEeCCCchhhhccHHHHHHHHHHHHhhhCC
Q psy5261 203 YSLLPRLEEAPVLYEWCGLRPHRSL-------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 203 ~~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~~~G~gg~G~t~a~~~a~~la~li~~~l~~ 259 (267)
+++.|.+.+........|++..||| |++++|.+||||+++|++|+.+|+++.+.+.+
T Consensus 312 ~~~~p~l~~~~p~~t~~C~YT~TpD~~FviD~~P~~~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~~~~e 381 (399)
T KOG2820|consen 312 RTFGPDLDDRSPINTKMCMYTDTPDANFVIDKHPQYDNVFVGGGGSGHGFKFAPNIGKYLAEMAMGDLSE 381 (399)
T ss_pred HHhCccccCCCcceeeEEEeeCCCCcCeeeecCCCcccEEEecCCCCcceeecchHHHHHHHHhhhcccc
Confidence 8899999988888889999999998 99999999999999999999999999999875
No 23
>KOG2852|consensus
Probab=99.74 E-value=3e-17 Score=138.65 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=141.1
Q ss_pred eeeeeehHHHHHHHHHHHHhCC-cEEEEEeeCCcccc-----------------ccCCCEEEEccCcCchhhcCCCCcee
Q psy5261 81 ETLVIENSDFLPWAMKRVSKQG-GKFRRGTVSSFSGL-----------------ESEFDFVFNCAGLGAQALCRDRKLTP 142 (267)
Q Consensus 81 ~~~~vdp~~~~~~L~~~~~~~G-~~~~~~~V~~l~~~-----------------~~~ad~VV~aaG~~s~~l~~~~~l~p 142 (267)
+.++++|.+||+.++..++++| |++...+|.++... ...++++|+++|+|+.+|.+..++.-
T Consensus 140 ttaqvhP~lFc~~i~sea~k~~~V~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~rIsg 219 (380)
T KOG2852|consen 140 TTAQVHPYLFCHFILSEAEKRGGVKLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFTRISG 219 (380)
T ss_pred ccceeCHHHHHHHHHHHHHhhcCeEEEEeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhccccccce
Confidence 4499999999999999998886 89998777776421 13689999999999999999999999
Q ss_pred ecceEEEEECCC--c-ceEEE------eC---CeEEEEecCCCe-EEEcceeecC-----CCCCCCCHHHHHHHHHHHHh
Q psy5261 143 IRGQVIKVWAPW--L-SHFYY------LD---YDVYVIPHSNGA-VTLGGCRHYD-----SYSRDISRHDTASILERCYS 204 (267)
Q Consensus 143 ~rg~~~~~~~p~--~-~~~v~------~~---~~~y~~p~~~g~-l~lGg~~~~~-----~~~~~~~~~~~~~l~~~~~~ 204 (267)
.|-+++++++++ + ++.++ +. -..-+++|.++. +++|++.+.. ..+...+++.+..|.+.+..
T Consensus 220 lrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~npeki~~Lk~~a~~ 299 (380)
T KOG2852|consen 220 LRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVNPEKIIELKEMADL 299 (380)
T ss_pred eeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecCCceEEEecCCCccccCCcccccceeCHHHHHHHHHHHHH
Confidence 999999998743 2 22232 11 122445666644 4556665432 23356889999999999999
Q ss_pred hCCCCCCCCceeeeccccCCCCC------------eEEEeCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 205 LLPRLEEAPVLYEWCGLRPHRSL------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 205 ~~P~l~~~~~~~~w~G~rp~~pd------------l~~~~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
+.+.+.+..+...-+++-|.+.+ +|+++||+-+|++.+|++|+.||++|++.-.
T Consensus 300 v~s~l~ks~v~~~qacfLP~sn~tg~PvIget~sg~yVaagHscWGItnaPaTG~~mAEllldgea 365 (380)
T KOG2852|consen 300 VSSELTKSNVLDAQACFLPTSNITGIPVIGETKSGVYVAAGHSCWGITNAPATGKCMAELLLDGEA 365 (380)
T ss_pred hhhhhccchhhhhhhccccccCCCCCceEeecCCceEEeecccccceecCcchhHHHHHHHhccce
Confidence 99999888888889999999865 9999999999999999999999999987644
No 24
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.72 E-value=2.5e-16 Score=145.59 Aligned_cols=205 Identities=19% Similarity=0.211 Sum_probs=160.6
Q ss_pred hhCCCcEECChhhhhcC-C----CCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------
Q psy5261 54 NLVPVYRDAQPDELVVG-N----KTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------- 116 (267)
Q Consensus 54 ~~g~~~~~l~~~el~~~-P----~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------- 116 (267)
+..+..+.++.++...+ | +.+.+|+.|+++++|+.+++...+..|.++|++++. ++|+++...
T Consensus 125 ~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~ 204 (532)
T COG0578 125 KLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDR 204 (532)
T ss_pred ccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEec
Confidence 34557889999988888 8 234568889999999999999999999999999998 688877532
Q ss_pred ------ccCCCEEEEccCcCchhhcC----C----CCceeecceEEEEEC--CCcceEEE----eCCeEEEEecCCCeEE
Q psy5261 117 ------ESEFDFVFNCAGLGAQALCR----D----RKLTPIRGQVIKVWA--PWLSHFYY----LDYDVYVIPHSNGAVT 176 (267)
Q Consensus 117 ------~~~ad~VV~aaG~~s~~l~~----~----~~l~p~rg~~~~~~~--p~~~~~v~----~~~~~y~~p~~~g~l~ 176 (267)
.++|+.||||||+|+.++.+ . .+++|.||.+++++. |.....+. +....+++|..+ ..+
T Consensus 205 ~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsHlVv~~~~~~~~a~~~~~~~d~r~~f~iP~~~-~~l 283 (532)
T COG0578 205 ETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSHLVVDKKFPINQAVINRCRKDGRIVFAIPYEG-KTL 283 (532)
T ss_pred CCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceEEEecccCCCCceEEeecCCCCceEEEecCCC-CEE
Confidence 26899999999999999874 1 369999999999987 43332222 335678889876 558
Q ss_pred EcceeecCC---CCCCCCHHHHHHHHHHHH-hhCCCCCCCCceeeeccccCCCCC-------------eEEEe---C---
Q psy5261 177 LGGCRHYDS---YSRDISRHDTASILERCY-SLLPRLEEAPVLYEWCGLRPHRSL-------------VIHNY---G--- 233 (267)
Q Consensus 177 lGg~~~~~~---~~~~~~~~~~~~l~~~~~-~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~~~---G--- 233 (267)
+|.|...-+ .+..+++++++.|++.+. .+-|.+...+|...|+|+||...| ++... |
T Consensus 284 iGTTD~~~~~~~~~~~~~~eEidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~~gllt 363 (532)
T COG0578 284 IGTTDTDYDGDPEDPRITEEEIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAELAGLLT 363 (532)
T ss_pred eeccccccCCCcccCCCCHHHHHHHHHHHHhhhhccCChhheeeeeeeeeeccCCCCCchhhccCceEEEecCCCCCeEE
Confidence 999876532 335689999999999999 556778888999999999999764 22222 1
Q ss_pred CCchhhhccHHHHHHHHHHHHhhhCC
Q psy5261 234 HGGYGVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 234 ~gg~G~t~a~~~a~~la~li~~~l~~ 259 (267)
..|.-||..--+|+.+.+.+...++.
T Consensus 364 v~GGKlTTyR~maE~a~d~v~~~lg~ 389 (532)
T COG0578 364 VAGGKLTTYRKMAEDALDAVCEKLGI 389 (532)
T ss_pred EecchhHHhHHHHHHHHHHHHHhcCC
Confidence 23567999999999999999999874
No 25
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=129.43 Aligned_cols=230 Identities=19% Similarity=0.204 Sum_probs=172.8
Q ss_pred hccCCCCceEEE-EEee-EeccCCc---------hhHhhhCCC-cEECChhhhhcC-C---CCceeEEEeee-eeeehHH
Q psy5261 27 KFSADGSTGKAM-ISTY-QTSLLKN---------ASIENLVPV-YRDAQPDELVVG-N---KTYKYGSYSET-LVIENSD 89 (267)
Q Consensus 27 ~~~~~~~~g~~~-~~g~-~~~~~~~---------~~~~~~g~~-~~~l~~~el~~~-P---~~~~~g~~~~~-~~vdp~~ 89 (267)
++++..+.++.+ ..|. .+..+++ +..++.++. .+.+|+++++++ | ++..+|++.+. +.+|+..
T Consensus 75 ~~~~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~ 154 (429)
T COG0579 75 EFAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGE 154 (429)
T ss_pred HHHHHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHH
Confidence 344445555533 3475 4444331 123456666 899999999999 9 23345555555 9999999
Q ss_pred HHHHHHHHHHhCCcEEEE-EeeCCcccc------------c--cCCCEEEEccCcCchhhcC------CCCceeecceEE
Q psy5261 90 FLPWAMKRVSKQGGKFRR-GTVSSFSGL------------E--SEFDFVFNCAGLGAQALCR------DRKLTPIRGQVI 148 (267)
Q Consensus 90 ~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~--~~ad~VV~aaG~~s~~l~~------~~~l~p~rg~~~ 148 (267)
++.+|++.++++|++++. ++|++|+.. + ++|+.||||+|.+|..|+. +..+.|++|+.+
T Consensus 155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~ 234 (429)
T COG0579 155 LTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYL 234 (429)
T ss_pred HHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCccceEEE
Confidence 999999999999999998 799998653 1 5899999999999999874 377899999999
Q ss_pred EEECC---CcceEEE-----e--CCeEEEEecCCCeEEEcceeecC----CCCCCCCHHHHHHHHHHHHhhCCCCC-CCC
Q psy5261 149 KVWAP---WLSHFYY-----L--DYDVYVIPHSNGAVTLGGCRHYD----SYSRDISRHDTASILERCYSLLPRLE-EAP 213 (267)
Q Consensus 149 ~~~~p---~~~~~v~-----~--~~~~y~~p~~~g~l~lGg~~~~~----~~~~~~~~~~~~~l~~~~~~~~P~l~-~~~ 213 (267)
.+... .+++.|+ . ..+.++.+..||.+++|.+.... ..+...+.+..+.+.......||.+. ...
T Consensus 235 ~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~~~~~~~~~ 314 (429)
T COG0579 235 VLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGMPDLGIKNN 314 (429)
T ss_pred EEcccccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhhccccccccchhhhHHHhhhhhccccccccc
Confidence 99872 2344444 1 25678888889999999987654 12245677888889999999999987 556
Q ss_pred ceeeeccccCCC-----CC-------------eEEEeCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 214 VLYEWCGLRPHR-----SL-------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 214 ~~~~w~G~rp~~-----pd-------------l~~~~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
....+.|.||+. ++ ...-+|.-..|+|.++..++.+.+++...
T Consensus 315 ~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~~ 375 (429)
T COG0579 315 VLANYAGIRPILKEPRLPALDFIIPEAKDEDWFINVAGIRSQGLTADPAIAGGVLELLTER 375 (429)
T ss_pred chhhhheeccccccccccccceecccccCCCCceeeeeEEccccccChhHhhhHhhhcccc
Confidence 788899999953 21 44446899999999999999999998775
No 26
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.39 E-value=1.4e-11 Score=115.25 Aligned_cols=202 Identities=14% Similarity=0.088 Sum_probs=136.9
Q ss_pred HhhhCC--CcEE-CChhhhhcC-CC--------CceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-
Q psy5261 52 IENLVP--VYRD-AQPDELVVG-NK--------TYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL- 116 (267)
Q Consensus 52 ~~~~g~--~~~~-l~~~el~~~-P~--------~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~- 116 (267)
.++.|+ +.++ ++++|++++ |. ...+|++.+. +++||..++.+|++.++++|++|+. ++|++++..
T Consensus 129 ~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~ 208 (483)
T TIGR01320 129 LKGHPLFEGMEFSEDPATFAEWLPLMAAGRDFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS 208 (483)
T ss_pred HhcCCCccCceEeCCHHHHHHhCCCcccCCCCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC
Confidence 345555 4665 799999999 81 1345666665 8999999999999999999999988 588776431
Q ss_pred -----------------ccCCCEEEEccCcCchhhcC--------CCCceeecceEEEEECCC----cceEEE---eC-C
Q psy5261 117 -----------------ESEFDFVFNCAGLGAQALCR--------DRKLTPIRGQVIKVWAPW----LSHFYY---LD-Y 163 (267)
Q Consensus 117 -----------------~~~ad~VV~aaG~~s~~l~~--------~~~l~p~rg~~~~~~~p~----~~~~v~---~~-~ 163 (267)
.++||.||||||.|+..|.+ +.++.|+||+++.++.+. ....|+ +. .
T Consensus 209 ~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~ 288 (483)
T TIGR01320 209 DGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASVGA 288 (483)
T ss_pred CCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCCCC
Confidence 15799999999999988863 358899999999998642 222344 22 2
Q ss_pred eEEEEecCC-----CeE--EEcceee--c----CCC--C--CCCCHHHH-------------------------HHHHHH
Q psy5261 164 DVYVIPHSN-----GAV--TLGGCRH--Y----DSY--S--RDISRHDT-------------------------ASILER 201 (267)
Q Consensus 164 ~~y~~p~~~-----g~l--~lGg~~~--~----~~~--~--~~~~~~~~-------------------------~~l~~~ 201 (267)
..|.+|+.| |.. ++|.++- + .++ | ..++...+ ...++.
T Consensus 289 p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~ 368 (483)
T TIGR01320 289 PPMSVPHLDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDLPLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEEERVSA 368 (483)
T ss_pred CCcEEecCCCccccCCEEEEECcCCCcchHhhcCCchhHHhhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHH
Confidence 257787653 333 3777665 1 111 1 11111110 122456
Q ss_pred HHhhCCCCCCCCceeeeccccCCC---C-----------C---------eEEEeCCCchhhhccHHHHHHHHHHHH
Q psy5261 202 CYSLLPRLEEAPVLYEWCGLRPHR---S-----------L---------VIHNYGHGGYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 202 ~~~~~P~l~~~~~~~~w~G~rp~~---p-----------d---------l~~~~G~gg~G~t~a~~~a~~la~li~ 254 (267)
+++++|++...++....+|.|+.. . | +.++.+- +.|.|.|..+|+.+++..-
T Consensus 369 ~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~~~i~~~~~~~~~l~~~-SPgaTss~~i~~~v~~~~~ 443 (483)
T TIGR01320 369 LREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGTTLIADADGSIAGLLGA-SPGASTAVSIMLDLLERCF 443 (483)
T ss_pred HHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCCeEEECCCCeEEEecCC-CchHHhhHHHHHHHHHHHh
Confidence 788999997666777789988752 1 1 3333443 7999999999999987653
No 27
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.38 E-value=7e-12 Score=116.95 Aligned_cols=203 Identities=15% Similarity=0.100 Sum_probs=136.7
Q ss_pred HhhhCC--CcEEC-ChhhhhcC-C---C-----CceeEEEeee-eeeehHHHHHHHHHHHHh-CCcEEEE-EeeCCcccc
Q psy5261 52 IENLVP--VYRDA-QPDELVVG-N---K-----TYKYGSYSET-LVIENSDFLPWAMKRVSK-QGGKFRR-GTVSSFSGL 116 (267)
Q Consensus 52 ~~~~g~--~~~~l-~~~el~~~-P---~-----~~~~g~~~~~-~~vdp~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~~ 116 (267)
+++.++ +.+.+ |++|+.++ | . ....|++.+. +.+|+..++++|++.+++ .|++++. ++|++++..
T Consensus 135 ~~~~~~f~~~~~~~d~~el~~~~P~l~~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~ 214 (497)
T PRK13339 135 LKQHPMFDNIEYTEDIEVMAKWMPLMMPGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERL 214 (497)
T ss_pred hhccCCCCCcEEecCHHHHHHhCCcccCCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEC
Confidence 456666 88999 89999998 8 2 2345566665 899999999999999965 4899987 577765311
Q ss_pred ------------------ccCCCEEEEccCcCchhhcC--------CCCceeecceEEEEECCC-cc-e--EEEe---C-
Q psy5261 117 ------------------ESEFDFVFNCAGLGAQALCR--------DRKLTPIRGQVIKVWAPW-LS-H--FYYL---D- 162 (267)
Q Consensus 117 ------------------~~~ad~VV~aaG~~s~~l~~--------~~~l~p~rg~~~~~~~p~-~~-~--~v~~---~- 162 (267)
.++||.||||+|+|+..|+. ..++.|+|||++.++++. +. | .|+. .
T Consensus 215 ~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~ 294 (497)
T PRK13339 215 SDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPESKHLGGFPISGQFLRCTNPEVVKQHQAKVYSKEPVG 294 (497)
T ss_pred CCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCceEeeeEEEEEecCHHHhhhcCceEeCCCCCC
Confidence 15799999999999988863 258999999999998743 22 1 3441 1
Q ss_pred CeEEEEecCCCe-------EEEcceeecC-----CCC---------C-CC---------CH----HH-------HHHHHH
Q psy5261 163 YDVYVIPHSNGA-------VTLGGCRHYD-----SYS---------R-DI---------SR----HD-------TASILE 200 (267)
Q Consensus 163 ~~~y~~p~~~g~-------l~lGg~~~~~-----~~~---------~-~~---------~~----~~-------~~~l~~ 200 (267)
...|.+|+.|++ +++|.++-+. ..+ . .+ +. .- -...++
T Consensus 295 ~P~~~VPhlDtr~i~G~~~v~~GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~ 374 (497)
T PRK13339 295 TPPMTVPHLDTRYIDGKRSLLFGPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRMN 374 (497)
T ss_pred CCCCcCCCCCCcEEcCceeEEECCCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHHH
Confidence 135777776544 4555444321 000 0 00 00 00 123456
Q ss_pred HHHhhCCCCCCCCceeeeccccCCCC--------C--------------eEEEeCCCchhhhccHHHHHHHHHHHH
Q psy5261 201 RCYSLLPRLEEAPVLYEWCGLRPHRS--------L--------------VIHNYGHGGYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 201 ~~~~~~P~l~~~~~~~~w~G~rp~~p--------d--------------l~~~~G~gg~G~t~a~~~a~~la~li~ 254 (267)
.+++++|.+...++....+|.|+..= | .+++.---+.|.|.|..+|+.+++.+-
T Consensus 375 ~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~~s~~~lna~SPgATssl~ia~~v~~~~f 450 (497)
T PRK13339 375 HLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKGFIQFGTEVVNSQDHSVIALLGESPGASTSVSVALEVLERNF 450 (497)
T ss_pred HHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCCEEEecceeeecCCCeEEEecCCCcHHHhhHHHHHHHHHHHh
Confidence 68889999976667777999998732 2 122222237899999999999988764
No 28
>KOG0042|consensus
Probab=99.37 E-value=4.3e-12 Score=115.63 Aligned_cols=194 Identities=16% Similarity=0.088 Sum_probs=147.4
Q ss_pred CcEECChhhhhcC-C----CCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEE-eeCCcccc---------------
Q psy5261 58 VYRDAQPDELVVG-N----KTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRG-TVSSFSGL--------------- 116 (267)
Q Consensus 58 ~~~~l~~~el~~~-P----~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~-~V~~l~~~--------------- 116 (267)
....+|.+|..++ | +++.++..|.+|+.|-.++..+++-.|.++|+.+.++ +|.++...
T Consensus 189 ~S~~lSk~~alE~fPmL~~~~L~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iT 268 (680)
T KOG0042|consen 189 SSYFLSKKEALEIFPMLRKDNLKGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHIT 268 (680)
T ss_pred cceeecHHHHHHhCccccccCceeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeec
Confidence 4678999999998 8 4667888888999999999999999999999999884 88776432
Q ss_pred ----ccCCCEEEEccCcCchhhcC------CCCceeecceEEEEEC---CC-cc--eEEE-eCCeEEEEecCCCeEEEcc
Q psy5261 117 ----ESEFDFVFNCAGLGAQALCR------DRKLTPIRGQVIKVWA---PW-LS--HFYY-LDYDVYVIPHSNGAVTLGG 179 (267)
Q Consensus 117 ----~~~ad~VV~aaG~~s~~l~~------~~~l~p~rg~~~~~~~---p~-~~--~~v~-~~~~~y~~p~~~g~l~lGg 179 (267)
+++|+.||||||..+..+.. ..-+.|..|.+++++. |. +. .|-. |..-.++.|..+ ..+.|.
T Consensus 269 G~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~pSsGvHIVlP~yY~P~~mGlldP~TsDgRViFflPWqg-~TIaGT 347 (680)
T KOG0042|consen 269 GKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPICVPSSGVHIVLPGYYCPENMGLLDPKTSDGRVIFFLPWQG-KTIAGT 347 (680)
T ss_pred CcEEEEEEEEEEeCCCCccHHHHhhcccccCceeccCCceeEEcccccCCcccccccCCCCCCcEEEEeccCC-ceeecc
Confidence 26899999999999998864 2346889999998874 43 21 0111 234456667655 777888
Q ss_pred eeecCC--CCCCCCHHHHHHHHHHHHhhCC---CCCCCCceeeeccccCCCCC----------------------eEEEe
Q psy5261 180 CRHYDS--YSRDISRHDTASILERCYSLLP---RLEEAPVLYEWCGLRPHRSL----------------------VIHNY 232 (267)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~P---~l~~~~~~~~w~G~rp~~pd----------------------l~~~~ 232 (267)
|..+.. .++.|++++++.|++.++.++- .+...++...|+|+||...| ++-.+
T Consensus 348 TD~pt~v~~~P~PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIa 427 (680)
T KOG0042|consen 348 TDIPTSVTHSPTPTEDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIA 427 (680)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEe
Confidence 877643 4577999999999999999874 24455688999999999755 22222
Q ss_pred CCCchhhhccHHHHHHHHHHHHh
Q psy5261 233 GHGGYGVTTAPGTSRYAVQLVKQ 255 (267)
Q Consensus 233 G~gg~G~t~a~~~a~~la~li~~ 255 (267)
|.-||.---+|+...+....
T Consensus 428 ---GGKWTTyR~MAEeTVd~aI~ 447 (680)
T KOG0042|consen 428 ---GGKWTTYRHMAEETVDAAIK 447 (680)
T ss_pred ---cCcchhHHHHHHHHHHHHHH
Confidence 45799999999998887654
No 29
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.28 E-value=3.1e-11 Score=112.89 Aligned_cols=206 Identities=17% Similarity=0.175 Sum_probs=138.3
Q ss_pred HhhhCCCcEECChhhhhcC-CC-----------CceeEEEeee--eeeehHHHHHHHHHHHHh----CC--cEEEE-Eee
Q psy5261 52 IENLVPVYRDAQPDELVVG-NK-----------TYKYGSYSET--LVIENSDFLPWAMKRVSK----QG--GKFRR-GTV 110 (267)
Q Consensus 52 ~~~~g~~~~~l~~~el~~~-P~-----------~~~~g~~~~~--~~vdp~~~~~~L~~~~~~----~G--~~~~~-~~V 110 (267)
+++.+.++++++++|++++ |. ....|++.++ +.+||..++.+|++.+++ +| ++|+. ++|
T Consensus 161 ~~~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V 240 (497)
T PTZ00383 161 FKELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEV 240 (497)
T ss_pred HHccCCCeEEECHHHHHHhCcccccCccccccccceEEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEE
Confidence 4567778999999999998 81 1235556564 589999999999999999 88 66776 688
Q ss_pred CCcccc------------ccCCCEEEEccCcCchhhcC------CCCceeecceEEEEECCCcceEEE---eC----CeE
Q psy5261 111 SSFSGL------------ESEFDFVFNCAGLGAQALCR------DRKLTPIRGQVIKVWAPWLSHFYY---LD----YDV 165 (267)
Q Consensus 111 ~~l~~~------------~~~ad~VV~aaG~~s~~l~~------~~~l~p~rg~~~~~~~p~~~~~v~---~~----~~~ 165 (267)
++|+.. .++||.||||||.|+..|++ +.++.|++|+.+.+.. .++..|+ +. ...
T Consensus 241 ~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~S~~La~~~Gi~~~~~i~Pv~G~~~~~~~-~~~~kVY~v~~p~~Pf~~v 319 (497)
T PTZ00383 241 LNIERSNDSLYKIHTNRGEIRARFVVVSACGYSLLFAQKMGYGLEYSCLPVAGSFYFSGN-ILNGKVYTVQNPALPFAAV 319 (497)
T ss_pred EEEEecCCCeEEEEECCCEEEeCEEEECcChhHHHHHHHhCCCCCCCEEecCceEEEcCh-hhcCceecCCCCCCCCcCc
Confidence 887642 25899999999999998864 6889999999987752 2222222 11 112
Q ss_pred EEEec--CCCeEEEcceeecC----CC------------CCCC-----------CHHHH----------------HHHHH
Q psy5261 166 YVIPH--SNGAVTLGGCRHYD----SY------------SRDI-----------SRHDT----------------ASILE 200 (267)
Q Consensus 166 y~~p~--~~g~l~lGg~~~~~----~~------------~~~~-----------~~~~~----------------~~l~~ 200 (267)
+.-|+ .+|.+++|.++-+. .+ +.+. +..-. ...++
T Consensus 320 H~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~ 399 (497)
T PTZ00383 320 HGDPDIIAKGKTRFGPTALPLPLLERYNMSSLPDFLKVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPLLNKYLFLK 399 (497)
T ss_pred cCCCccCCCCeEEEccCcccchHHhCCCCCchHHHHHhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 22233 25678888876431 11 1111 01111 12335
Q ss_pred HHHhhCCCCCCCCcee--eeccccCCCCC------------------eEEEeCCCchhhhccHHHHHHHHHHHHhhhCC
Q psy5261 201 RCYSLLPRLEEAPVLY--EWCGLRPHRSL------------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 201 ~~~~~~P~l~~~~~~~--~w~G~rp~~pd------------------l~~~~G~gg~G~t~a~~~a~~la~li~~~l~~ 259 (267)
.+++++|.+...++.. .+.|.||..=| ++.+.|- +.|-|.+.+.|+.=+..|.+.|+.
T Consensus 400 ~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~~~~~L~~g~~~i~~~~~~i~~~~~-spgast~l~~~~~d~~~~~~~~~~ 477 (497)
T PTZ00383 400 DARKIVPSLTRKDLRYCVGYGGVRPQLIDKVSKKLLLGEGKIDPGKGIIFNITP-SPGATTCLGNAESDMREICERLGA 477 (497)
T ss_pred HHHHhCCCCCHHHeeeccCCCceEEEEEECCCCeEecCceEEecCCCcEEeccC-CCcHHHHHHHHHHHHHHHHHHhCC
Confidence 5778999987555554 35599987432 3336665 689999999998888888888865
No 30
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.26 E-value=8.2e-11 Score=110.23 Aligned_cols=203 Identities=16% Similarity=0.071 Sum_probs=135.3
Q ss_pred HhhhCC--CcEE-CChhhhhcC-CC--------CceeEEEeee-eeeehHHHHHHHHHHHHhCC-cEEEE-EeeCCcccc
Q psy5261 52 IENLVP--VYRD-AQPDELVVG-NK--------TYKYGSYSET-LVIENSDFLPWAMKRVSKQG-GKFRR-GTVSSFSGL 116 (267)
Q Consensus 52 ~~~~g~--~~~~-l~~~el~~~-P~--------~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G-~~~~~-~~V~~l~~~ 116 (267)
+++.|. ++++ ++++|++++ |. +..+|++.+. +.+|+..++.+|++.++++| ++++. ++|++++..
T Consensus 134 ~~~~g~~~~~~~~~d~~el~e~eP~l~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~ 213 (494)
T PRK05257 134 LKANPLFAGMEFSEDPAQIKEWAPLMMEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRN 213 (494)
T ss_pred HHhCCCCCCCEEeCCHHHHHHhCcccccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEEC
Confidence 455565 5677 499999998 81 2345566555 89999999999999999987 79987 677776431
Q ss_pred ------------------ccCCCEEEEccCcCchhhcC--------CCCceeecceEEEEECCCc--ceE--EEe----C
Q psy5261 117 ------------------ESEFDFVFNCAGLGAQALCR--------DRKLTPIRGQVIKVWAPWL--SHF--YYL----D 162 (267)
Q Consensus 117 ------------------~~~ad~VV~aaG~~s~~l~~--------~~~l~p~rg~~~~~~~p~~--~~~--v~~----~ 162 (267)
.++|+.||+|+|.|+..|.. +.++.|+|||++.++++.+ ++. |+. .
T Consensus 214 ~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~~~v~~~~~kvY~~~~~~ 293 (494)
T PRK05257 214 DDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENPEVVAQHHAKVYGKASVG 293 (494)
T ss_pred CCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCHHHHhcCCeEEecCCCCC
Confidence 15799999999999998863 3479999999999987532 333 441 1
Q ss_pred CeEEEEecCCCe-------EEEcceeecC-----CC-----------CCC--------CCH----HH-------HHHHHH
Q psy5261 163 YDVYVIPHSNGA-------VTLGGCRHYD-----SY-----------SRD--------ISR----HD-------TASILE 200 (267)
Q Consensus 163 ~~~y~~p~~~g~-------l~lGg~~~~~-----~~-----------~~~--------~~~----~~-------~~~l~~ 200 (267)
...|.+|+.|++ +++|.++-+. +. +.- .+. .- -...++
T Consensus 294 ~P~~~vPh~dtr~i~G~~~~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 373 (494)
T PRK05257 294 APPMSVPHLDTRVIDGKRSLLFGPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFE 373 (494)
T ss_pred CCCCCCCCCCCcEECCceeEEECCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHH
Confidence 234777776544 4445443221 00 000 000 00 123446
Q ss_pred HHHhhCCCCCCCCceeeeccccCCC--C----------C----------eEEEeCCCchhhhccHHHHHHHHHHHHh
Q psy5261 201 RCYSLLPRLEEAPVLYEWCGLRPHR--S----------L----------VIHNYGHGGYGVTTAPGTSRYAVQLVKQ 255 (267)
Q Consensus 201 ~~~~~~P~l~~~~~~~~w~G~rp~~--p----------d----------l~~~~G~gg~G~t~a~~~a~~la~li~~ 255 (267)
.+++++|.+....+....+|.|+.. + | +.+..|- +.|.|.|..+++.+++.+..
T Consensus 374 ~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~~~~~l~~~-SPgat~s~~i~~~v~~~~~~ 449 (494)
T PRK05257 374 ALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFGTEVVSSADGSIAALLGA-SPGASTAVPIMLEVLEKCFP 449 (494)
T ss_pred HHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECCcEEEecCCCeEEEEcCC-CchHHHHHHHHHHHHHHhCH
Confidence 6888999987666666779988763 1 1 3233333 78999999999999886543
No 31
>KOG2665|consensus
Probab=99.02 E-value=1.6e-09 Score=93.33 Aligned_cols=201 Identities=15% Similarity=0.203 Sum_probs=145.4
Q ss_pred hhhCCCcEECChhhhhcC-CCCc--eeEE-EeeeeeeehHHHHHHHHHHHHhCCcEEEEE-eeCCcccc-----------
Q psy5261 53 ENLVPVYRDAQPDELVVG-NKTY--KYGS-YSETLVIENSDFLPWAMKRVSKQGGKFRRG-TVSSFSGL----------- 116 (267)
Q Consensus 53 ~~~g~~~~~l~~~el~~~-P~~~--~~g~-~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~-~V~~l~~~----------- 116 (267)
+....+.++|+..|+.++ | .. .-++ ...+|.+|...++..+.+.++..|.+++.. ++..+...
T Consensus 158 qN~v~glrmieg~ei~~~EP-~crgvkAl~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv 236 (453)
T KOG2665|consen 158 QNGVPGLRMIEGSEIMEMEP-YCRGVKALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVV 236 (453)
T ss_pred hcCCCCeeeeccchhhhcCh-hhhhhhhhcCCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEE
Confidence 345568999999999999 8 22 1223 334499999999999999999999999984 88887543
Q ss_pred ------ccCCCEEEEccCcCchhhcC------CCCceeecceEEEEECC---CcceEEE---eC----CeEEEEecCCCe
Q psy5261 117 ------ESEFDFVFNCAGLGAQALCR------DRKLTPIRGQVIKVWAP---WLSHFYY---LD----YDVYVIPHSNGA 174 (267)
Q Consensus 117 ------~~~ad~VV~aaG~~s~~l~~------~~~l~p~rg~~~~~~~p---~~~~~v~---~~----~~~y~~p~~~g~ 174 (267)
+.++..||-|+|..+..+.. +..+.|.||..+.+.+. .+++.++ +. .+....|+.+|.
T Consensus 237 ~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~ylll~~ek~h~vk~niyPvpd~RFpflGvhftPrm~g~ 316 (453)
T KOG2665|consen 237 LNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYLLLKPEKLHLVKGNIYPVPDPRFPFLGVHFTPRMDGS 316 (453)
T ss_pred ecCccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhhhcChHHhccccCceeeCCCCCCccccccccCcCCCc
Confidence 25789999999999887642 67889999999888763 1333332 11 345667888877
Q ss_pred EEEcceeec---------CC----------------------CCCCCCHHHHHHHH----HHHHhhCCCCCCCCceeeec
Q psy5261 175 VTLGGCRHY---------DS----------------------YSRDISRHDTASIL----ERCYSLLPRLEEAPVLYEWC 219 (267)
Q Consensus 175 l~lGg~~~~---------~~----------------------~~~~~~~~~~~~l~----~~~~~~~P~l~~~~~~~~w~ 219 (267)
+.+|...-. .+ ++-.+++-.-+..+ +.+++++|++++..+.+-.+
T Consensus 317 iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpa 396 (453)
T KOG2665|consen 317 IWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPA 396 (453)
T ss_pred eecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCccccccccccCcc
Confidence 777643210 00 11113333333334 78899999999999999999
Q ss_pred cccCCCCC---------------------eEEEeCCCchhhhccHHHHHHHHHHHH
Q psy5261 220 GLRPHRSL---------------------VIHNYGHGGYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 220 G~rp~~pd---------------------l~~~~G~gg~G~t~a~~~a~~la~li~ 254 (267)
|+|...-| +.+.-+.-+.|.|.|.++|+++|+.+.
T Consensus 397 GvRaqald~~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlAIa~mIa~k~~ 452 (453)
T KOG2665|consen 397 GVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLAIAKMIADKFL 452 (453)
T ss_pred cccchhccCCCCCchheEEecCccccccceEEecCCCCccchhhHHHHHHHHHHhc
Confidence 99944322 777778889999999999999998764
No 32
>PLN02697 lycopene epsilon cyclase
Probab=98.25 E-value=3.8e-05 Score=72.69 Aligned_cols=171 Identities=12% Similarity=0.097 Sum_probs=107.3
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-------------ccCCCEEEEccCcCchhhcC------CCCceee
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL-------------ESEFDFVFNCAGLGAQALCR------DRKLTPI 143 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~-------------~~~ad~VV~aaG~~s~~l~~------~~~l~p~ 143 (267)
+.++...+.+.|++.+.+.|++++.++|++++.. .++|+.||.|+|.++..+.. ..+.+..
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a 266 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTA 266 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEE
Confidence 4689999999999999999999976777666421 26899999999999965543 2457889
Q ss_pred cceEEEEECCC--cceE-EEe----------------CCeEEEEecCCCeEEEcceeecCCCCCCCCHHHH-HHHHHHHH
Q psy5261 144 RGQVIKVWAPW--LSHF-YYL----------------DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDT-ASILERCY 203 (267)
Q Consensus 144 rg~~~~~~~p~--~~~~-v~~----------------~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~-~~l~~~~~ 203 (267)
+|+.+.++.+. .+.. ++| ....|++|..++++.|=+|.-.. ....+.+.. ++|.+.+.
T Consensus 267 ~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~--~~~l~~~~l~~~L~~~l~ 344 (529)
T PLN02697 267 YGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLAS--KDAMPFDLLKKRLMSRLE 344 (529)
T ss_pred EEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeecc--CCCCCHHHHHHHHHHHHH
Confidence 99999887522 1111 212 13478899988888885653211 112333433 34555555
Q ss_pred hhCCCCCCCCceeeeccccCCCCC-------eEEEeC--------CCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 204 SLLPRLEEAPVLYEWCGLRPHRSL-------VIHNYG--------HGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 204 ~~~P~l~~~~~~~~w~G~rp~~pd-------l~~~~G--------~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
+. ++...++.+.-.|+.|+..+ +. +.| ..|.|+..+...|..+|+.|.+.+.
T Consensus 345 ~~--Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl-~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~ 411 (529)
T PLN02697 345 TM--GIRILKTYEEEWSYIPVGGSLPNTEQKNL-AFGAAASMVHPATGYSVVRSLSEAPKYASVIARILK 411 (529)
T ss_pred hC--CCCcceEEEEEeeeecCCCCCcccCCCee-EeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhh
Confidence 43 45555677777777888422 22 212 2244665555555566666655554
No 33
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.10 E-value=0.00013 Score=63.33 Aligned_cols=164 Identities=18% Similarity=0.133 Sum_probs=102.1
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCchhhcCCCCc-----eee
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQALCRDRKL-----TPI 143 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~~l~~~~~l-----~p~ 143 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||.|+|.++. +.+.+.+ ...
T Consensus 86 ~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~-~~~~~~~~~~~~~~~ 164 (295)
T TIGR02032 86 YVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI-VAKKLGLRKEPRELG 164 (295)
T ss_pred EEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH-HHHhcCCCCCCccee
Confidence 4688888999999999999999987 577765321 2679999999999874 3221111 222
Q ss_pred cceEEEEECCC---c-ce-EEE-e-----CCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCCCC
Q psy5261 144 RGQVIKVWAPW---L-SH-FYY-L-----DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEA 212 (267)
Q Consensus 144 rg~~~~~~~p~---~-~~-~v~-~-----~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~ 212 (267)
.+....++.+. . +. .++ + ....|++|..++++.+|-+..... +....++.++...+.+|.+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 239 (295)
T TIGR02032 165 VAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE-----EGEDLKKYLKDFLARRPELKDA 239 (295)
T ss_pred eEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC-----CCCCHHHHHHHHHHhCcccccC
Confidence 23333343321 1 11 122 1 245788998887787875543222 1233344444555667888777
Q ss_pred CceeeeccccCCCCC--------eEEE-------eCCCchhhhccHHHHHHHHHH
Q psy5261 213 PVLYEWCGLRPHRSL--------VIHN-------YGHGGYGVTTAPGTSRYAVQL 252 (267)
Q Consensus 213 ~~~~~w~G~rp~~pd--------l~~~-------~G~gg~G~t~a~~~a~~la~l 252 (267)
++.+.+.+..|+... +++. .-+.|.|+.+|.-.|.++|+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~ 294 (295)
T TIGR02032 240 ETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEV 294 (295)
T ss_pred cEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhh
Confidence 777777777777532 3332 115688999999988888764
No 34
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.96 E-value=0.00048 Score=62.60 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=104.5
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-------------ccCCCEEEEccCcCch----hhcCCCCceeecc
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL-------------ESEFDFVFNCAGLGAQ----ALCRDRKLTPIRG 145 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~-------------~~~ad~VV~aaG~~s~----~l~~~~~l~p~rg 145 (267)
..++...+.+.|.+.+++.|++++.++|.+++.. .++|+.||.|+|.++. .......+...+|
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q~~~G 159 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYG 159 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEEEEEE
Confidence 5699999999999999999999876666555321 2689999999999981 1112345566788
Q ss_pred eEEEEECCC--cce-EEEe---C----------C--eEEEEecCCCeEEEcceeecCCCCCCCCHHHHHH-HHHHHHhhC
Q psy5261 146 QVIKVWAPW--LSH-FYYL---D----------Y--DVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTAS-ILERCYSLL 206 (267)
Q Consensus 146 ~~~~~~~p~--~~~-~v~~---~----------~--~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 206 (267)
+.+.++.+. ... .+++ + . ..|++|..++++.++.+.. .. ....+.+..++ +.+.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~-~~-~~~~~~~~~~~~l~~~~~~~- 236 (388)
T TIGR01790 160 VEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSL-AD-RPALPRDRLRQRILARLNAQ- 236 (388)
T ss_pred EEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccc-cC-CCCCCHHHHHHHHHHHHHHc-
Confidence 888876421 121 1111 0 1 4688898777888865432 11 12234444443 33333332
Q ss_pred CCCCCCCceeeeccccCCCC------C-eEEEe-------CCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 207 PRLEEAPVLYEWCGLRPHRS------L-VIHNY-------GHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 207 P~l~~~~~~~~w~G~rp~~p------d-l~~~~-------G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
++...++...-.|..|+.. + +++.. -..|.|+..+.-.|..+|+.+...+.
T Consensus 237 -g~~~~~i~~~~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~ 301 (388)
T TIGR01790 237 -GWQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALC 301 (388)
T ss_pred -CCeeeEEEeeeeEEEecccCCCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhc
Confidence 2332334443445555522 2 33321 15678999999999999998866553
No 35
>PLN02463 lycopene beta cyclase
Probab=97.54 E-value=0.0046 Score=57.57 Aligned_cols=173 Identities=14% Similarity=0.187 Sum_probs=102.2
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc------------ccCCCEEEEccCcCchhhcCCCCc----eeecce
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL------------ESEFDFVFNCAGLGAQALCRDRKL----TPIRGQ 146 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~------------~~~ad~VV~aaG~~s~~l~~~~~l----~p~rg~ 146 (267)
+.++...+...|.+.+.+.|++++..+|++++.. .++||.||.|+|..+..+..+.+. +...|.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~~~~~g~Q~a~Gi 188 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDKPFNPGYQVAYGI 188 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCCCCCccceeeeeE
Confidence 6789999999999999999999987677776431 268999999999987533212221 223333
Q ss_pred EEEEEC-C-CcceEEE-e-------------------CCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHH-HHHHHHH
Q psy5261 147 VIKVWA-P-WLSHFYY-L-------------------DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTA-SILERCY 203 (267)
Q Consensus 147 ~~~~~~-p-~~~~~v~-~-------------------~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~-~l~~~~~ 203 (267)
.+.++. | .....++ | ....|+.|..++++.++-|.-... ...+.+..+ .+.+++.
T Consensus 189 ~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~--~~~~~~~lk~~L~~~l~ 266 (447)
T PLN02463 189 LAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVAR--PGLPMDDIQERMVARLR 266 (447)
T ss_pred EeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecC--CCCCHHHHHHHHHHHHH
Confidence 344332 2 1111111 0 135699999888888777643211 123344443 3444444
Q ss_pred hhCCCCCCCCceeeeccccCCC------CCeEEEeC--------CCchhhhccHHHHHHHHHHHHhhhCC
Q psy5261 204 SLLPRLEEAPVLYEWCGLRPHR------SLVIHNYG--------HGGYGVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 204 ~~~P~l~~~~~~~~w~G~rp~~------pdl~~~~G--------~gg~G~t~a~~~a~~la~li~~~l~~ 259 (267)
+ + ++...++.+.-.|+.|+. ++=+++.| ..|-|+..+...|..+|+.|.+.+..
T Consensus 267 ~-~-Gi~~~~i~~~E~~~IPmg~~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 267 H-L-GIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred H-C-CCCcceeeeeeeeEeeCCCCCCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 2 2 344445665555666763 22112222 23567777888888888888877754
No 36
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.49 E-value=0.0045 Score=56.24 Aligned_cols=138 Identities=15% Similarity=0.164 Sum_probs=95.2
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc------------ccCCCEEEEccCcCchhhcCCCCceeecceEEEE
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL------------ESEFDFVFNCAGLGAQALCRDRKLTPIRGQVIKV 150 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~------------~~~ad~VV~aaG~~s~~l~~~~~l~p~rg~~~~~ 150 (267)
..++...|-..|.+.+++.|+.++..+|++++.. .++|+.||.|.|..+. .......+.-.|..+.+
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~~~~~~~Q~f~G~~v~~ 160 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP-KARPLGLQHFYGWEVET 160 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc-cccccccceeEEEEEec
Confidence 6899999999999999966766666788887543 2679999999996554 22234456677888877
Q ss_pred ECCC--cceEE-E------e---CCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHH-HHHHHHHhhCCCCCCCCceee
Q psy5261 151 WAPW--LSHFY-Y------L---DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTA-SILERCYSLLPRLEEAPVLYE 217 (267)
Q Consensus 151 ~~p~--~~~~v-~------~---~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~-~l~~~~~~~~P~l~~~~~~~~ 217 (267)
+.|. ...++ + . ....|++|..+++++|..|.--. ....+.+..+ .|.+.+.+ -++...++.+.
T Consensus 161 ~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~--~~~~~~~~~~~~l~~~l~~--~g~~~~~i~~~ 236 (374)
T PF05834_consen 161 DEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP--RPALPEEELKARLRRYLER--LGIDDYEILEE 236 (374)
T ss_pred cCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC--CCCCCHHHHHHHHHHHHHH--cCCCceeEEEe
Confidence 7652 22222 1 1 14579999988899998775422 2224555554 56666666 36677789999
Q ss_pred eccccCCC
Q psy5261 218 WCGLRPHR 225 (267)
Q Consensus 218 w~G~rp~~ 225 (267)
-.|..||+
T Consensus 237 E~G~IPm~ 244 (374)
T PF05834_consen 237 ERGVIPMT 244 (374)
T ss_pred ecceeecc
Confidence 99999994
No 37
>PRK06185 hypothetical protein; Provisional
Probab=97.26 E-value=0.015 Score=53.19 Aligned_cols=172 Identities=17% Similarity=0.173 Sum_probs=99.6
Q ss_pred eeehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch--hhcC-CCCcee
Q psy5261 84 VIENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ--ALCR-DRKLTP 142 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~--~l~~-~~~l~p 142 (267)
.+.-..+...|.+.+++. |++++. ++|++++.. .++||.||.|.|.+|. +.+. +.+..+
T Consensus 104 ~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~ 183 (407)
T PRK06185 104 MMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFG 183 (407)
T ss_pred EeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccC
Confidence 455567788888888765 888876 466554210 2679999999999984 2222 344556
Q ss_pred ecceEEEEECCCc-c-----eEEE-eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCCC-CCc
Q psy5261 143 IRGQVIKVWAPWL-S-----HFYY-LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEE-APV 214 (267)
Q Consensus 143 ~rg~~~~~~~p~~-~-----~~v~-~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~-~~~ 214 (267)
.+++++++..+.. . ...+ ......++|.. +.+.++.+..... .........+.+.+.+.+.+|.+.. ...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 261 (407)
T PRK06185 184 APMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGG-YAALRAAGLEAFRERVAELAPELADRVAE 261 (407)
T ss_pred CCceeEEEecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCC-chhhhhhhHHHHHHHHHHhCccHHHHHhh
Confidence 6667666654311 1 0112 22345666765 6777776654433 2233444556777777788887432 111
Q ss_pred eeeecc--ccC--------CCCC-eEE-------EeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 215 LYEWCG--LRP--------HRSL-VIH-------NYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 215 ~~~w~G--~rp--------~~pd-l~~-------~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
...|.. ..| ...+ +++ ..-++|.|+.++.--|..+++.+...+
T Consensus 262 ~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~ 322 (407)
T PRK06185 262 LKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPL 322 (407)
T ss_pred cCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHh
Confidence 112221 111 1112 322 234778999999988888887776544
No 38
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.04 E-value=0.0068 Score=55.85 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=108.1
Q ss_pred CcEEC-ChhhhhcC-C---C-----CceeEEEeee-eeeehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc--------
Q psy5261 58 VYRDA-QPDELVVG-N---K-----TYKYGSYSET-LVIENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL-------- 116 (267)
Q Consensus 58 ~~~~l-~~~el~~~-P---~-----~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~-------- 116 (267)
..+.- +++++++. | + ..+.+-.... --||=..+++.|.+.+++. |++++. ++|++|++.
T Consensus 140 ~Me~sed~~~i~~w~PLvm~gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~ 219 (488)
T PF06039_consen 140 GMEFSEDPEQIAEWAPLVMEGRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVK 219 (488)
T ss_pred CcEEccCHHHHHhhCCeecCCCCCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEE
Confidence 45655 67888887 8 1 1223333334 4699999999999999888 999988 799999753
Q ss_pred ----------ccCCCEEEEccCcCchhhcC--------CCCceeecceEEEEECCCc----ceEEE---e-CCeEEEEec
Q psy5261 117 ----------ESEFDFVFNCAGLGAQALCR--------DRKLTPIRGQVIKVWAPWL----SHFYY---L-DYDVYVIPH 170 (267)
Q Consensus 117 ----------~~~ad~VV~aaG~~s~~l~~--------~~~l~p~rg~~~~~~~p~~----~~~v~---~-~~~~y~~p~ 170 (267)
.++|+.|+++||.+|=.|+. ..--.|+.|+-+....|.+ ..-|+ . +...+-+|.
T Consensus 220 ~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmSvPH 299 (488)
T PF06039_consen 220 VKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMSVPH 299 (488)
T ss_pred EEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccceEEecCCHHHHHHhcceeeeeCCCCCCCccCcc
Confidence 25799999999999977764 3557899999999987653 11233 1 112233443
Q ss_pred CC-----C--eEEEcceeecC------C--CC--CCC--------------CHHHH-----------HHHHHHHHhhCCC
Q psy5261 171 SN-----G--AVTLGGCRHYD------S--YS--RDI--------------SRHDT-----------ASILERCYSLLPR 208 (267)
Q Consensus 171 ~~-----g--~l~lGg~~~~~------~--~~--~~~--------------~~~~~-----------~~l~~~~~~~~P~ 208 (267)
.| | .+++|.++-+. + +| .++ +.+-. +.-.+.+++++|.
T Consensus 300 lDtRiidGk~~llFGP~Agfs~KfLK~GS~~Dl~~S~~~~N~~~ml~~~~~n~~L~kYLi~q~~~s~~~r~~~Lr~f~P~ 379 (488)
T PF06039_consen 300 LDTRIIDGKKSLLFGPFAGFSPKFLKNGSYLDLFKSLRPDNLFPMLAVGLDNFDLTKYLIGQVLQSKEDRMEALRKFYPS 379 (488)
T ss_pred CCchhcCCCcceeecCccccchHHhcCCcHHHHHhhcCcccHHHHHHHHhhhhhHHHHHHHhhccCHHHHHHHHHHhCcc
Confidence 33 2 46677665331 1 11 000 01111 2234667889999
Q ss_pred CCCCCceeeeccccCCC
Q psy5261 209 LEEAPVLYEWCGLRPHR 225 (267)
Q Consensus 209 l~~~~~~~~w~G~rp~~ 225 (267)
+...+....-+|-|+..
T Consensus 380 a~~~DW~l~~AGqRvQi 396 (488)
T PF06039_consen 380 AKPEDWELITAGQRVQI 396 (488)
T ss_pred CChhceEEEecCceeeE
Confidence 87766666779998874
No 39
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.92 E-value=0.047 Score=49.99 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=99.2
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCchhhcCCCCce---e---
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQALCRDRKLT---P--- 142 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~~l~~~~~l~---p--- 142 (267)
..++-..|.++|++.+++.|++++. ++|+++... +++|+.||.|.|..+.- ...+.+. |
T Consensus 90 y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l-~~~lg~~~~~~~~~ 168 (396)
T COG0644 90 YIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL-ARKLGLKDRKPEDY 168 (396)
T ss_pred EEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH-HHHhCCCCCChhhe
Confidence 6788899999999999999999998 688877532 25799999999986532 2111111 1
Q ss_pred ecceEEEEECC-C--cceEEE------eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCC
Q psy5261 143 IRGQVIKVWAP-W--LSHFYY------LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAP 213 (267)
Q Consensus 143 ~rg~~~~~~~p-~--~~~~v~------~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~ 213 (267)
.-++.-.+..| + ....+. .....+++|..++.+.+|-..........+..+.++++.+.... -+.+...+
T Consensus 169 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~~~~~l~~f~~~~~~-~~~~~~~~ 247 (396)
T COG0644 169 AIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSLSPFLELLERFKEHPAI-RKLLLGGK 247 (396)
T ss_pred eEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCCcCCCchHHHHHHHHhCccc-chhccCCc
Confidence 11222222223 1 112221 12567899998887888766444331111111222222221100 00111134
Q ss_pred ceeeeccccCCC---------CCeEE-------EeCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 214 VLYEWCGLRPHR---------SLVIH-------NYGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 214 ~~~~w~G~rp~~---------pdl~~-------~~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
+...-+|..|.. +++.+ +..+.|.|+..|..+|+++|+.|.+.+.
T Consensus 248 ~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~ 308 (396)
T COG0644 248 ILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALE 308 (396)
T ss_pred eEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHH
Confidence 444445544443 12222 3346689999999999999999988653
No 40
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.76 E-value=0.021 Score=52.02 Aligned_cols=174 Identities=15% Similarity=0.080 Sum_probs=93.3
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchhhcC----CCCc--eee
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQALCR----DRKL--TPI 143 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~l~~----~~~l--~p~ 143 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||.|.|.++. +.+ ..+. ++.
T Consensus 108 ~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~-vr~~~g~~~~~~~~~~ 186 (392)
T PRK08773 108 WIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST-LRELAGLPVSRHDYAQ 186 (392)
T ss_pred EEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch-HHHhhcCCceEEEecc
Confidence 3577788999999999999999987 577766421 2689999999999984 322 1121 344
Q ss_pred cceEEEEEC--CCcce--EEE-eCCeEEEEecCCCeEEEcceeecCCCC--CCCCH-HHHHHHHHHHHhhCCCCCCCCce
Q psy5261 144 RGQVIKVWA--PWLSH--FYY-LDYDVYVIPHSNGAVTLGGCRHYDSYS--RDISR-HDTASILERCYSLLPRLEEAPVL 215 (267)
Q Consensus 144 rg~~~~~~~--p~~~~--~v~-~~~~~y~~p~~~g~l~lGg~~~~~~~~--~~~~~-~~~~~l~~~~~~~~P~l~~~~~~ 215 (267)
++.+..++. |.... ..+ .+...+++|..++...+.-+....... ...+. +..+++.+.....++.+......
T Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 266 (392)
T PRK08773 187 RGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRVASPR 266 (392)
T ss_pred EEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEecCCc
Confidence 565555543 22111 112 234567788776655443322111110 01122 22334444444443332211100
Q ss_pred eeecc----ccCCCCC-eEEE-------eCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 216 YEWCG----LRPHRSL-VIHN-------YGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 216 ~~w~G----~rp~~pd-l~~~-------~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
..|.= ......+ +++. .-++|.|+.++.--|..+++.+...+
T Consensus 267 ~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~ 320 (392)
T PRK08773 267 TAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAH 320 (392)
T ss_pred cEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHH
Confidence 11110 0011111 3332 23678999999999999998887544
No 41
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.74 E-value=0.032 Score=51.64 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=39.7
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..++-..|-++|++.+++.|++++. ++|++++.. .++|+.||.|+|.++.
T Consensus 103 ~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~ 165 (428)
T PRK10157 103 YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSI 165 (428)
T ss_pred eeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHH
Confidence 4566678889999999999999987 578776421 2589999999999763
No 42
>PRK08244 hypothetical protein; Provisional
Probab=96.43 E-value=0.13 Score=48.52 Aligned_cols=169 Identities=13% Similarity=0.084 Sum_probs=86.0
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCc--hhhcC------CCCc
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGA--QALCR------DRKL 140 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s--~~l~~------~~~l 140 (267)
+.-..+-+.|.+.+++.|++++. ++|++++.. .++||.||.|.|.+| ++.+. +...
T Consensus 97 i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~ 176 (493)
T PRK08244 97 LPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATF 176 (493)
T ss_pred ecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcce
Confidence 33345667777888888999987 577665321 257999999999998 33332 1112
Q ss_pred eeecceEEEEECCC-cceEEE-eCCeEEEEecCCCeEEEcceeec-C--CCCCCCCHHHHHHHHHHHHhhCCCCCCCCce
Q psy5261 141 TPIRGQVIKVWAPW-LSHFYY-LDYDVYVIPHSNGAVTLGGCRHY-D--SYSRDISRHDTASILERCYSLLPRLEEAPVL 215 (267)
Q Consensus 141 ~p~rg~~~~~~~p~-~~~~v~-~~~~~y~~p~~~g~l~lGg~~~~-~--~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~ 215 (267)
....+.+....++. .....+ .....+++|..++.+.+.-.... . ..+...+.+. +.+.+.+.++..-.. ..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~-~~ 252 (493)
T PRK08244 177 TAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEE---LKTSLIRICGTDFGL-ND 252 (493)
T ss_pred EEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHH---HHHHHHHhhCCCCCc-CC
Confidence 22222222111121 111112 23467788887776655422111 0 1112234443 444444555421111 01
Q ss_pred eeeccccCC--------CCC-eEE-------EeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 216 YEWCGLRPH--------RSL-VIH-------NYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 216 ~~w~G~rp~--------~pd-l~~-------~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
..|....+. +.+ +++ ..-++|.|+.++.--|..++..+...+
T Consensus 253 ~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l 310 (493)
T PRK08244 253 PVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAI 310 (493)
T ss_pred eeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHH
Confidence 224322221 111 333 344778999999888877776665444
No 43
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.37 E-value=0.14 Score=46.63 Aligned_cols=167 Identities=15% Similarity=0.188 Sum_probs=90.1
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCccc--------------------cccCCCEEEEccCcCchh--hcC-CCC
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSG--------------------LESEFDFVFNCAGLGAQA--LCR-DRK 139 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~--------------------~~~~ad~VV~aaG~~s~~--l~~-~~~ 139 (267)
+.++-..|-+.|++.+.+.|++++.++|+++.. ..++||.||.|.|.+|.- .+. ..+
T Consensus 87 ~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~ 166 (388)
T TIGR02023 87 GMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKN 166 (388)
T ss_pred EeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCC
Confidence 358888899999999999999997655655421 125799999999998742 111 111
Q ss_pred ceeecceEEEEECCC-----c-c--eEEEe-----CCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhC
Q psy5261 140 LTPIRGQVIKVWAPW-----L-S--HFYYL-----DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLL 206 (267)
Q Consensus 140 l~p~rg~~~~~~~p~-----~-~--~~v~~-----~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (267)
....-++...+..+. . . ...++ +...+++|..+ .+.+|-.... ...+. +.+.+...+.+
T Consensus 167 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~vg~~~~~----~~~~~---~~~~~~l~~~~ 238 (388)
T TIGR02023 167 LPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIAVGTGTGT----HGFDA---KQLQANLRRRA 238 (388)
T ss_pred CcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeEEeEEECC----CCCCH---HHHHHHHHHhh
Confidence 100111111222110 0 1 11111 13457778754 5666543211 11222 23333444443
Q ss_pred CCCCCCCceeeeccccCCCC------C-eEEE-------eCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 207 PRLEEAPVLYEWCGLRPHRS------L-VIHN-------YGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 207 P~l~~~~~~~~w~G~rp~~p------d-l~~~-------~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
+ +...++...+.+..|+.+ + +++. .-.+|-|+.+|.-.|+++|+.+...+.
T Consensus 239 ~-~~~~~~~~~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 239 G-LDGGQTIRREAAPIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred C-CCCceEeeeeeEeccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 3 333334444445444422 2 3332 225788999999999999998877653
No 44
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.36 E-value=0.052 Score=49.45 Aligned_cols=174 Identities=15% Similarity=0.026 Sum_probs=91.8
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchhhcC--CC----Cceee
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQALCR--DR----KLTPI 143 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~l~~--~~----~l~p~ 143 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||.|.|.++. +.+ .+ .-++.
T Consensus 106 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~~~~~~~~~ 184 (403)
T PRK07333 106 HMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIKTVGWDYGQ 184 (403)
T ss_pred EEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCCcccccCCC
Confidence 3678889999999999999999987 678777432 2579999999999986 322 11 12334
Q ss_pred cceEEEEECCC--cc--eEEE-eCCeEEEEecCCCeEEEcceeecC---CCCCCCCHHHHHHHHHHHHhhCCCCCCCCce
Q psy5261 144 RGQVIKVWAPW--LS--HFYY-LDYDVYVIPHSNGAVTLGGCRHYD---SYSRDISRHDTASILERCYSLLPRLEEAPVL 215 (267)
Q Consensus 144 rg~~~~~~~p~--~~--~~v~-~~~~~y~~p~~~g~l~lGg~~~~~---~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~ 215 (267)
.+.+..++.+. .. ...+ .+...+++|..++...+.-..... .+....+....+.+.+.....++.+......
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 264 (403)
T PRK07333 185 SGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRFGHRLGELKVLGKR 264 (403)
T ss_pred EEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceEeccCc
Confidence 44444444321 11 1111 223467778777665543221110 0101111122233433333333322111000
Q ss_pred eee-ccccC---CCCC-eEEE-------eCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 216 YEW-CGLRP---HRSL-VIHN-------YGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 216 ~~w-~G~rp---~~pd-l~~~-------~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
..| ...++ ...+ +++. .-++|.|+.++.--|..+++.+...+
T Consensus 265 ~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~ 318 (403)
T PRK07333 265 RAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAA 318 (403)
T ss_pred cEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHH
Confidence 011 11111 1112 3332 33778899999999998888876544
No 45
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.26 E-value=0.0055 Score=56.29 Aligned_cols=54 Identities=13% Similarity=-0.011 Sum_probs=44.7
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcC-chhhcC
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLG-AQALCR 136 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~-s~~l~~ 136 (267)
-.+-+.++.++|.+.++++|++|+. .+|.+++.. .++||+||+|+|.| ++.|..
T Consensus 258 PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 258 PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHh
Confidence 6777889999999999999999998 477665311 25899999999999 998875
No 46
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.18 E-value=0.051 Score=49.27 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=60.1
Q ss_pred eeeehHHHHHHHHHHHHhCC-cEEEEEeeCCcccc------------ccCCCEEEEccCcCch--hhcC-CCCceee--c
Q psy5261 83 LVIENSDFLPWAMKRVSKQG-GKFRRGTVSSFSGL------------ESEFDFVFNCAGLGAQ--ALCR-DRKLTPI--R 144 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G-~~~~~~~V~~l~~~------------~~~ad~VV~aaG~~s~--~l~~-~~~l~p~--r 144 (267)
..++...+...|.+.+++.| ++++.++|++++.. .++||.||.|.|.+|. ..+. ..+..+. .
T Consensus 106 ~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~ 185 (388)
T PRK07608 106 WIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQT 185 (388)
T ss_pred EEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCE
Confidence 46888999999999999888 88875567766421 2679999999999975 1121 2333343 3
Q ss_pred ceEEEEECCCc--c--eEEE-eCCeEEEEecCCCeEEEc
Q psy5261 145 GQVIKVWAPWL--S--HFYY-LDYDVYVIPHSNGAVTLG 178 (267)
Q Consensus 145 g~~~~~~~p~~--~--~~v~-~~~~~y~~p~~~g~l~lG 178 (267)
++...++.+.. . .... .+...+++|..++.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 224 (388)
T PRK07608 186 GVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMV 224 (388)
T ss_pred EEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEE
Confidence 44444443221 1 1111 234566778877766553
No 47
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.84 E-value=0.14 Score=46.34 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=40.6
Q ss_pred eeeehHHHHHHHHHHHHh-CCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSK-QGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..++...+.+.|.+.+++ .|++++. ++|++++.. .++||.||.|.|.+|.
T Consensus 100 ~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 100 YVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred EEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 357888999999999988 4999987 688877432 2579999999999975
No 48
>PRK10015 oxidoreductase; Provisional
Probab=95.42 E-value=0.22 Score=46.10 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=38.4
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..++=..|-++|.+.+++.|++++. ++|+++... .++|+.||.|.|..+.
T Consensus 103 ~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 103 YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSM 165 (429)
T ss_pred eEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchh
Confidence 3455567788899999999999987 577776421 2579999999998753
No 49
>PRK06847 hypothetical protein; Provisional
Probab=95.26 E-value=1.1 Score=40.32 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=40.6
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||.|+|.++.
T Consensus 102 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 102 GGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred ccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 4677788899999999989999988 577777532 2579999999999984
No 50
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.18 E-value=0.26 Score=44.34 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=40.0
Q ss_pred eeeehHHHHHHHHHHHHhCC-cEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQG-GKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G-~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..++-..+...|.+.+.+.| ++++. ++|++++.. .+++|.||.|.|.++.
T Consensus 101 ~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 101 YVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred EEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 35667788999999999888 89887 578777532 2579999999999975
No 51
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.01 E-value=2 Score=39.28 Aligned_cols=165 Identities=14% Similarity=0.186 Sum_probs=88.1
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEEEeeCCcc----------------------c--cccCCCEEEEccCcCchhhcCCCC
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRRGTVSSFS----------------------G--LESEFDFVFNCAGLGAQALCRDRK 139 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~----------------------~--~~~~ad~VV~aaG~~s~~l~~~~~ 139 (267)
.++=..|-+.|++.+++.|++++..++.+++ . ..++|+.||.|.|..|.- .+.+.
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v-~~~~g 167 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRV-AKEID 167 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHH-HHHhC
Confidence 5777778889999999999999764343221 0 135899999999998742 22111
Q ss_pred c---eeecceEEEEECCC--c----ce--EEEe-----CCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHH
Q psy5261 140 L---TPIRGQVIKVWAPW--L----SH--FYYL-----DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCY 203 (267)
Q Consensus 140 l---~p~rg~~~~~~~p~--~----~~--~v~~-----~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~ 203 (267)
+ .....+...++.|. . .. +.++ +...+++|..+ ++.+|-... ......+ .+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~----~~~~~~~---~~~~~l~ 239 (398)
T TIGR02028 168 AGDYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTV----AAKPEIK---RLQSGIR 239 (398)
T ss_pred CCCcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEEEEEeC----CCCccHH---HHHHhhh
Confidence 1 11112222222221 1 11 1111 12478889874 666765321 1111222 2333322
Q ss_pred hhCCC-CCCCCceeeeccccCCC-------CCeEEE-------eCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 204 SLLPR-LEEAPVLYEWCGLRPHR-------SLVIHN-------YGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 204 ~~~P~-l~~~~~~~~w~G~rp~~-------pdl~~~-------~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
..++. +...++....+|.-|.. +++++. .-++|-|+-+|.-+|+++|+.+.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~ 308 (398)
T TIGR02028 240 ARAAGKVAGGRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEES 308 (398)
T ss_pred hhhhhccCCCcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 22221 22334444444444432 224332 22678999999999999999887665
No 52
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=94.65 E-value=0.69 Score=41.99 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=81.9
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------ccCCCEEEEccCcCchhhcCCCCceeecceEEEEECC
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------ESEFDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAP 153 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------~~~ad~VV~aaG~~s~~l~~~~~l~p~rg~~~~~~~p 153 (267)
..++-..|-+.+.+.+.. + +.. .+|.++... .++|+.||.|.|..+..... .-.+--+|..+.+..|
T Consensus 84 ~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~~~~~-~~~Q~f~G~~~r~~~p 159 (370)
T TIGR01789 84 RSMTSTRFHEGLLQAFPE-G--VILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPSAHLK-GGFQVFLGREMRLQEP 159 (370)
T ss_pred eEEEHHHHHHHHHHhhcc-c--EEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCCcccc-ceeeEEEEEEEEEcCC
Confidence 778888888888766643 3 433 466555321 36899999999988654332 3445667777887765
Q ss_pred C-cceE-EEe--------CCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHH-HHHHHHHhhCCCCCCCCceeeecccc
Q psy5261 154 W-LSHF-YYL--------DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTA-SILERCYSLLPRLEEAPVLYEWCGLR 222 (267)
Q Consensus 154 ~-~~~~-v~~--------~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~-~l~~~~~~~~P~l~~~~~~~~w~G~r 222 (267)
. .+.+ ++| ....|+.|-.++++.+..|..- +. ...+.+..+ .|.+.+.+. ++...++.+...|..
T Consensus 160 ~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s-~~-~~l~~~~l~~~l~~~~~~~--g~~~~~i~~~e~g~i 235 (370)
T TIGR01789 160 HGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYA-DD-PLLDRNALSQRIDQYARAN--GWQNGTPVRHEQGVL 235 (370)
T ss_pred CCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEecc-CC-CCCCHHHHHHHHHHHHHHh--CCCceEEEEeeeeEE
Confidence 2 2222 221 1357888988888888655321 11 234555544 455555554 445556777677888
Q ss_pred CC
Q psy5261 223 PH 224 (267)
Q Consensus 223 p~ 224 (267)
|+
T Consensus 236 Pm 237 (370)
T TIGR01789 236 PV 237 (370)
T ss_pred ee
Confidence 87
No 53
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=94.60 E-value=1.1 Score=41.95 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=86.1
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc--------------ccCCCEEEEccCcCchhhcCCC---------C
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL--------------ESEFDFVFNCAGLGAQALCRDR---------K 139 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l~~~~---------~ 139 (267)
.++|-.+|-+.|.+.|+++||++++.+|.++... .++||.||-|+|..+. |.++. .
T Consensus 149 yhlDR~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~-L~~~~L~~~~~~~~~ 227 (454)
T PF04820_consen 149 YHLDRAKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL-LARKALKVGFRDWSD 227 (454)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C-CCCCCT-EEEEEETT
T ss_pred EEEeHHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch-hhHhhhcCCCccccc
Confidence 7899999999999999999999988555544211 2689999999998653 22221 1
Q ss_pred ceee-cceEEEEECCC-c-c--e-EEEeCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCC
Q psy5261 140 LTPI-RGQVIKVWAPW-L-S--H-FYYLDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAP 213 (267)
Q Consensus 140 l~p~-rg~~~~~~~p~-~-~--~-~v~~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~ 213 (267)
..++ +...+.++... . . . ...+....+.+|..+ +... |..-...+- .+.+..+.+.+...... .... .
T Consensus 228 ~L~~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~-~~~~-G~V~s~~~~--s~~~A~~~l~~~l~~~~-~~~~-~ 301 (454)
T PF04820_consen 228 WLPNDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQN-RRGS-GYVYSSDFI--SDDEAEAELLAYLGGSP-EAEP-R 301 (454)
T ss_dssp TCEEEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESS-EEEE-EEEEETTTS--HHHHHHHHHHHHHTCHC-TTSC-E
T ss_pred cccccEEEEEecCcCCCCCCceeEEecCCceEEEccCCC-cceE-EEEeccccC--CHHHHHHHHHHhcchhh-hcch-h
Confidence 1221 22233333211 1 1 1 112345678899877 4444 332211211 12233344444443321 1111 2
Q ss_pred ceeeeccccCC--CCCeEEEeCC--------CchhhhccHHHHHHHHHHHHhh
Q psy5261 214 VLYEWCGLRPH--RSLVIHNYGH--------GGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 214 ~~~~w~G~rp~--~pdl~~~~G~--------gg~G~t~a~~~a~~la~li~~~ 256 (267)
......|.+.. .++ |++.|. .+.|+.++...++.+++++...
T Consensus 302 ~i~~~~g~~~~~~~~n-~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~ 353 (454)
T PF04820_consen 302 HIRFRSGRRKQFWGKN-CVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD 353 (454)
T ss_dssp EEE-S-EEESSSEETT-EEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT
T ss_pred hhcccccchhhcccCC-EEEEcchhhccCccccccHHHHHHHHHHHHHhcccC
Confidence 33444443222 233 445564 4789998888888888777643
No 54
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.52 E-value=2.2 Score=39.84 Aligned_cols=166 Identities=13% Similarity=0.172 Sum_probs=88.4
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEEEeeCCcc----------------------c--cccCCCEEEEccCcCchhh--cCC
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRRGTVSSFS----------------------G--LESEFDFVFNCAGLGAQAL--CRD 137 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~----------------------~--~~~~ad~VV~aaG~~s~~l--~~~ 137 (267)
.++=..|-+.|++.+++.|++++..++.++. . ..++||.||-|.|..|.-- +.-
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~ 207 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDA 207 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCC
Confidence 4777788889999999999998764443221 0 1357999999999987421 110
Q ss_pred CCceeecceEEEEECCC--c---c---eEEEe-----CCeEEEEecCCCeEEEcceeecCCCCCCCCHHH-HHHHHHHHH
Q psy5261 138 RKLTPIRGQVIKVWAPW--L---S---HFYYL-----DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHD-TASILERCY 203 (267)
Q Consensus 138 ~~l~p~rg~~~~~~~p~--~---~---~~v~~-----~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~-~~~l~~~~~ 203 (267)
.+....-++...++.|. . . ...++ +...+++|..+ .+.+|-..... ..+... .+.+.+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~g~~~~----~~~~~~~~~~l~~~~~ 282 (450)
T PLN00093 208 GDYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVVN----KPAIKKYQRATRNRAK 282 (450)
T ss_pred CCcceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEEEEEEccC----CCChHHHHHHHHHHhh
Confidence 01111112222222221 1 1 11111 12458889875 66666532111 112222 222332222
Q ss_pred hhCCCCCCCCceeeeccccCCCC-------CeEEE-------eCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 204 SLLPRLEEAPVLYEWCGLRPHRS-------LVIHN-------YGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 204 ~~~P~l~~~~~~~~w~G~rp~~p-------dl~~~-------~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
.. +.+.++.+..++.-|..+ .+++. .-+.|-|+.+|..+|+++|+.+.+.+
T Consensus 283 ~~---l~~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 283 DK---IAGGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred hh---cCCCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 22 223344444444444321 13332 23678999999999999999988765
No 55
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=94.47 E-value=0.25 Score=44.83 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=88.3
Q ss_pred eeehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchh--hcC---CCCceeec
Q psy5261 84 VIENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQA--LCR---DRKLTPIR 144 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~--l~~---~~~l~p~r 144 (267)
.++...+...|.+.+++. |++++. ++|++++.. .++||.||.|.|.+|.- .+. ..+.++..
T Consensus 108 ~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~ 187 (391)
T PRK08020 108 MVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQS 187 (391)
T ss_pred EEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCce
Confidence 467778888999888876 999886 577776421 26799999999999852 221 22334445
Q ss_pred ceEEEEECCC--cc--eE-EEeCCeEEEEecCCCeEEEcceeecCCC--CCCCCHHHHHHHHHHHHhhCCC-CCCCCcee
Q psy5261 145 GQVIKVWAPW--LS--HF-YYLDYDVYVIPHSNGAVTLGGCRHYDSY--SRDISRHDTASILERCYSLLPR-LEEAPVLY 216 (267)
Q Consensus 145 g~~~~~~~p~--~~--~~-v~~~~~~y~~p~~~g~l~lGg~~~~~~~--~~~~~~~~~~~l~~~~~~~~P~-l~~~~~~~ 216 (267)
++...++.+. .. .. +..+....++|..++...+.-+...... ....+.+ .+.+.+.+.+|. +.. +..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~--~~~ 262 (391)
T PRK08020 188 CMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQLQAMSMA---QLQQEIAAHFPARLGA--VTP 262 (391)
T ss_pred EEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHHHHCCCHH---HHHHHHHHHhhhhccc--eEe
Confidence 5555555321 11 11 1122233455655443333222111000 0011222 233333334442 211 122
Q ss_pred eeccccCCC--------CC-eEEE-------eCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 217 EWCGLRPHR--------SL-VIHN-------YGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 217 ~w~G~rp~~--------pd-l~~~-------~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
.+.+..|.. .+ +++. .-++|.|+.++.--|..+++.+...
T Consensus 263 ~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~ 318 (391)
T PRK08020 263 VAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNA 318 (391)
T ss_pred ccccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHH
Confidence 233333321 11 3332 3377999999999999999888754
No 56
>PLN02612 phytoene desaturase
Probab=94.42 E-value=1.7 Score=41.82 Aligned_cols=170 Identities=14% Similarity=0.059 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------------ccCCCEEEEccCcCchh-hcCC----CC--------
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQA-LCRD----RK-------- 139 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~~-l~~~----~~-------- 139 (267)
..++..|.+.++++|++|+. ++|++|+.. .++||+||+|+....-. |+++ .+
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l 387 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKL 387 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhc
Confidence 56889999999899999998 688887531 14799999999875433 3331 11
Q ss_pred -ceeecceEEEEECCC---cceEEEeC-C--eEEEE-e-------cCCCeEEEcceee-cCCCCCCCCHHHHHHHHHHHH
Q psy5261 140 -LTPIRGQVIKVWAPW---LSHFYYLD-Y--DVYVI-P-------HSNGAVTLGGCRH-YDSYSRDISRHDTASILERCY 203 (267)
Q Consensus 140 -l~p~rg~~~~~~~p~---~~~~v~~~-~--~~y~~-p-------~~~g~l~lGg~~~-~~~~~~~~~~~~~~~l~~~~~ 203 (267)
-.|+--..+.++.|. ..+.+.+. . ..+.- . ..+.. ++..... ...|....+++..+.+++.+.
T Consensus 388 ~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~-ll~~~~~~a~~~~~~sdeei~e~vl~~L~ 466 (567)
T PLN02612 388 VGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKS-MLELVFAPAEEWISRSDEDIIDATMKELA 466 (567)
T ss_pred CCCCeEEEEEEECcccCCCCCceeecCCCCceeehhhhhcchhhcCCCCe-EEEEEEEcChhhhcCCHHHHHHHHHHHHH
Confidence 111111222333221 11222211 0 11110 0 11222 2222221 223444466777889999999
Q ss_pred hhCCCCCC-----CCcee-eec-----------cc---cCC--CC--CeEEEe-----CCCchhhhccHHHHHHHHHHHH
Q psy5261 204 SLLPRLEE-----APVLY-EWC-----------GL---RPH--RS--LVIHNY-----GHGGYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 204 ~~~P~l~~-----~~~~~-~w~-----------G~---rp~--~p--dl~~~~-----G~gg~G~t~a~~~a~~la~li~ 254 (267)
++||.... ..+.. .++ |. ||. +| ++|++. ++.+ ++--|..+|+..|+.|.
T Consensus 467 ~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~-smeGAv~SG~~AA~~I~ 545 (567)
T PLN02612 467 KLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVLSGKLCAQSIV 545 (567)
T ss_pred HHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchh-hHHHHHHHHHHHHHHHH
Confidence 99997521 11221 111 11 111 12 277763 2222 57778888999999998
Q ss_pred hhhCC
Q psy5261 255 QALDP 259 (267)
Q Consensus 255 ~~l~~ 259 (267)
..++.
T Consensus 546 ~~~~~ 550 (567)
T PLN02612 546 QDYEL 550 (567)
T ss_pred HHhcc
Confidence 87754
No 57
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.01 E-value=0.089 Score=45.33 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=38.9
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------------------~~~ad~VV~aaG~~s~ 132 (267)
..+|+..++..|.+.+++.|++++. ++|.++... .++|+.||+|+|.++.
T Consensus 99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 4578999999999999999999987 577776321 1467888888887775
No 58
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=93.94 E-value=0.058 Score=52.01 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=40.8
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCC-CEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEF-DFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~a-d~VV~aaG~~s~ 132 (267)
..+++..++..|.+.++++|++|+. ++|++|... .++| +.||+|+|.|+.
T Consensus 212 ~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 212 HLVNGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4578889999999999999999987 577776421 1467 999999999986
No 59
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.58 E-value=1.6 Score=39.50 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=34.8
Q ss_pred eehHHHHHHHHHHHHh-CCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSK-QGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
++-..+.+.|.+.+.+ .|++++. ++|++++.. .+++|.||.|.|.++.
T Consensus 109 ~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 109 VELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred EEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 4445566778777766 4789886 577776421 2579999999999985
No 60
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=93.33 E-value=0.12 Score=46.89 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=40.2
Q ss_pred eeeehH-----HHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 83 LVIENS-----DFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 83 ~~vdp~-----~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
|++-|. ..+++|.+++++.||+++. ++|.+++.. .++||.+|+|+|--|
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcC
Confidence 655554 7899999999999999998 689988653 268999999999544
No 61
>PRK07233 hypothetical protein; Provisional
Probab=93.27 E-value=5.4 Score=36.44 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcC
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLG 130 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~ 130 (267)
...++..|++.+++.|++++. ++|++|+.. .++||+||+|+...
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 356889999999999999987 688887532 25799999999865
No 62
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=92.41 E-value=7.4 Score=35.22 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCc
Q psy5261 90 FLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 90 ~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s 131 (267)
+...|++.++++|++|+. ++|++|+.. .+.||+||+|+-.+.
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 335578888888999987 688887532 256999999988763
No 63
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=92.23 E-value=2.5 Score=39.70 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCccc---------c------------ccCCCEEEEccCcCc-hhhcC
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSG---------L------------ESEFDFVFNCAGLGA-QALCR 136 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~---------~------------~~~ad~VV~aaG~~s-~~l~~ 136 (267)
.+...|.+.++++|++|+. ++|++|+. . .+.||+||+|+..+. ..|++
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLP 290 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCC
Confidence 3567788999999999987 57776632 0 145899999999884 34544
No 64
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=92.19 E-value=0.16 Score=47.82 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=43.3
Q ss_pred eEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch--hhcC
Q psy5261 76 YGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ--ALCR 136 (267)
Q Consensus 76 ~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~--~l~~ 136 (267)
+|++++. |. ..++.+|.+.++++|++|+. ++|++|... .++||.||+|+|.|.. .|++
T Consensus 219 ~g~~~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 219 GGINYPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred ceEecCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence 3555555 44 57899999999999999998 688877421 2579999999999854 3543
No 65
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=92.03 E-value=0.17 Score=48.71 Aligned_cols=50 Identities=12% Similarity=-0.018 Sum_probs=40.5
Q ss_pred eeeeehHHHHHHHHHHHHhC-CcEEEEEeeCCcccc--------------ccCCCEEEEccCcCc
Q psy5261 82 TLVIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGL--------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 82 ~~~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~--------------~~~ad~VV~aaG~~s 131 (267)
.+++|+..|..++.+.+++. |+++++.+|.++... .+.|+.||+|||.|.
T Consensus 90 RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 90 RAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 38999999999999999888 788887666655211 257999999999995
No 66
>KOG0404|consensus
Probab=90.70 E-value=0.32 Score=40.90 Aligned_cols=70 Identities=14% Similarity=0.024 Sum_probs=49.3
Q ss_pred CcEECChhhhhcCCCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-----------ccCCCEEEEc
Q psy5261 58 VYRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL-----------ESEFDFVFNC 126 (267)
Q Consensus 58 ~~~~l~~~el~~~P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~-----------~~~ad~VV~a 126 (267)
.-++-+..++..+| + |++|. ....++.-+.+++++.|.+++...|.++... .+.||.||+|
T Consensus 48 GGQLtTTT~veNfP-G------FPdgi-~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~a 119 (322)
T KOG0404|consen 48 GGQLTTTTDVENFP-G------FPDGI-TGPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILA 119 (322)
T ss_pred CceeeeeeccccCC-C------CCccc-ccHHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEe
Confidence 34444444555444 2 33333 3356788899999999999998777776532 3689999999
Q ss_pred cCcCchhhc
Q psy5261 127 AGLGAQALC 135 (267)
Q Consensus 127 aG~~s~~l~ 135 (267)
+|+-++.|.
T Consensus 120 tGAsAkRl~ 128 (322)
T KOG0404|consen 120 TGASAKRLH 128 (322)
T ss_pred cccceeeee
Confidence 999998773
No 67
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=90.65 E-value=0.83 Score=43.07 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=38.4
Q ss_pred eehHHHHHHHHHHHHh-CCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCchh
Q psy5261 85 IENSDFLPWAMKRVSK-QGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~~ 133 (267)
.+...++..|.+.+++ .|+++++ ++|+++... .++|+.||+|+|.++..
T Consensus 125 ~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 125 ATGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 3567889999999987 6999988 677776421 14799999999999863
No 68
>PRK06184 hypothetical protein; Provisional
Probab=90.50 E-value=9.9 Score=35.86 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
..+-..|.+.+++.|++++. ++|++++.. .++||.||.|.|.+|.
T Consensus 109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 109 WRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 44567788888888999987 577776431 2579999999999984
No 69
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=90.39 E-value=2.6 Score=38.07 Aligned_cols=49 Identities=16% Similarity=-0.002 Sum_probs=36.2
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
.++...+...|.+.+++.|...+. ++|++++.. .++||.||.|.|.+|.
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 107 NIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred EeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 467778889999988887533344 577776432 2679999999999985
No 70
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.02 E-value=6 Score=36.05 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=35.4
Q ss_pred eehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
+....+.+.|.+.+.+. |++++. ++|++++.. .++||.||.|.|.+|.
T Consensus 118 ~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 118 GEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred EecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 44456788888888775 788876 577766321 2689999999999984
No 71
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=89.95 E-value=0.36 Score=46.68 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=41.3
Q ss_pred eeeehHHHHHHHHHHHHhC-CcEEEEEeeCCcccc-------------ccCCCEEEEccCcCchhh
Q psy5261 83 LVIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGL-------------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~-------------~~~ad~VV~aaG~~s~~l 134 (267)
+++|...|..++.+.+++. |+++++.+|.++... .+.|+.||+|+|.|++.+
T Consensus 95 aQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g~ 160 (618)
T PRK05192 95 AQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLRGK 160 (618)
T ss_pred HhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchhcC
Confidence 7999999999999998866 788877677665321 257999999999887543
No 72
>PLN02487 zeta-carotene desaturase
Probab=89.82 E-value=4.4 Score=39.13 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=37.1
Q ss_pred eehH-HHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------------ccCCCEEEEccCcCc-hhhcC
Q psy5261 85 IENS-DFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------------ESEFDFVFNCAGLGA-QALCR 136 (267)
Q Consensus 85 vdp~-~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------------~~~ad~VV~aaG~~s-~~l~~ 136 (267)
..+. .+...+++.++++|++|+. ++|+.|+.. .+.||+||.|++.+. ..|++
T Consensus 291 Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp 366 (569)
T PLN02487 291 GSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLP 366 (569)
T ss_pred CCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCC
Confidence 3445 4788899999999999987 466655321 145899999999984 34554
No 73
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=89.69 E-value=0.41 Score=44.29 Aligned_cols=50 Identities=14% Similarity=-0.000 Sum_probs=40.3
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
+..+...++..|.+.+++.|++|+. ++|+++... .+.++.||+|+|.++.
T Consensus 125 g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 125 GAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 4566788999999999999999988 677777421 1468999999999886
No 74
>PLN02985 squalene monooxygenase
Probab=89.38 E-value=6.2 Score=37.59 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=35.7
Q ss_pred eeeehHHHHHHHHHHHHhC-CcEEEEEeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
..++-..+.+.|.+.+++. |+++++++|+++.+. .++||.||.|.|.+|.
T Consensus 142 ~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 142 RSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred eeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH
Confidence 3566678899999988776 688876554443210 1358999999999985
No 75
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=89.17 E-value=0.81 Score=43.38 Aligned_cols=50 Identities=10% Similarity=-0.074 Sum_probs=38.4
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
+...+..++..|.+.+++.|++++. ++|++|... .+.|+.||+|+|.++.
T Consensus 185 g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 185 GSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred CCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 4455677889999999999999987 577766421 2579999999997764
No 76
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=89.03 E-value=0.31 Score=44.96 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=31.1
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCc
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s 131 (267)
-.+...+.+|.+.++++|++++. ++|.+++.. .+.||.||+|+|.-|
T Consensus 106 ~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 106 DKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp --HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 36788999999999999999998 788888531 257999999999765
No 77
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=89.00 E-value=0.63 Score=42.38 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=38.3
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCc
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s 131 (267)
-.+...+.+|...+++.||+|+. ++|++|+.. .++||+||+|+|.-+
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 45678899999999999999998 688887321 157999999999754
No 78
>PRK09126 hypothetical protein; Provisional
Probab=88.90 E-value=6.1 Score=35.71 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=34.4
Q ss_pred eehHHHHHHHHHHHH-hCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVS-KQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~-~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
++-..+.+.|.+.+. ..|++++. ++|++++.. .++||.||.|.|.++.
T Consensus 107 ~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 107 VPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred EeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 344456677777764 46899987 577776432 2589999999999874
No 79
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=87.11 E-value=0.37 Score=39.21 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=34.5
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchh
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~ 133 (267)
.......+...|.+.+++.|.+++. ++|++++.. .++||.||+|+|.++..
T Consensus 77 ~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p 140 (203)
T PF13738_consen 77 DFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHP 140 (203)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB
T ss_pred ccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCC
Confidence 4466677788888888899998776 678887542 25799999999986543
No 80
>PRK08401 L-aspartate oxidase; Provisional
Probab=86.86 E-value=0.87 Score=42.68 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHhCCcEEEEEeeCCcccc------------ccCCCEEEEccCcCchhh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRRGTVSSFSGL------------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~~~V~~l~~~------------~~~ad~VV~aaG~~s~~l 134 (267)
...++..|.+.+++.|+++++.+++.+... .+.++.||+|||.|+...
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDGELLKFDATVIATGGFSGLF 178 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECCEEEEeCeEEECCCcCcCCC
Confidence 467889999999999999987566555321 257999999999998753
No 81
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=86.84 E-value=0.9 Score=41.46 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=38.3
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
.++...+...|.+.+++.|++++. ++|++++.. .++||.||.|.|.||.
T Consensus 108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 108 IVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 456667778899888888999987 577766431 2689999999999984
No 82
>PRK07045 putative monooxygenase; Reviewed
Probab=85.84 E-value=22 Score=32.12 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=34.1
Q ss_pred eehHHHHHHHHHHHHh-CCcEEEE-EeeCCcccc--------------ccCCCEEEEccCcCc
Q psy5261 85 IENSDFLPWAMKRVSK-QGGKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s 131 (267)
+.-..+.+.|.+.+.+ .|++++. ++|++++.. .+++|.||-|.|.+|
T Consensus 103 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 103 IPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred ccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 4445677788887754 5788887 677766431 257999999999997
No 83
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.64 E-value=2.1 Score=41.34 Aligned_cols=47 Identities=11% Similarity=-0.057 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCchh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~~ 133 (267)
...++..|.+.+++.|++|+. +.|+++... .+.|+.||+|||.++..
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 367889999999999999987 577766321 15799999999998753
No 84
>PRK12839 hypothetical protein; Provisional
Probab=85.51 E-value=1 Score=43.48 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=38.6
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc--c---------------cc-CCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L---------------ES-EFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~---------------~~-~ad~VV~aaG~~s~ 132 (267)
.+++..++..|++.+++.|++|+. ++|++|.. . .+ .++.||+|||.++.
T Consensus 210 ~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 210 LVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 357889999999999999999987 67777632 1 12 35899999999986
No 85
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=85.38 E-value=0.98 Score=43.59 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=38.1
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCC-CEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEF-DFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~a-d~VV~aaG~~s~ 132 (267)
.++..++.+|.+.++++|++++. ++|+++... .+.| +.||+|||.+..
T Consensus 218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 218 VMGNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 46788999999999999999987 577776421 1455 789999999876
No 86
>PRK07121 hypothetical protein; Validated
Probab=85.25 E-value=1.1 Score=42.29 Aligned_cols=47 Identities=17% Similarity=-0.018 Sum_probs=37.2
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCC-CEEEEccCcCch
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEF-DFVFNCAGLGAQ 132 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~a-d~VV~aaG~~s~ 132 (267)
+...++..|.+.+++.|++|+. ++|++|... .++| +.||+|+|.++.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 5678999999999999999987 677776321 1468 999999998763
No 87
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=84.78 E-value=1.4 Score=40.50 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s 131 (267)
...++..|.+.+++.|++++. ++|++++.. .+.||.||+|+|.++
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCCcc
Confidence 467888999999999999987 577776432 257999999999876
No 88
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=84.68 E-value=2.3 Score=40.90 Aligned_cols=46 Identities=13% Similarity=-0.083 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
...+...|.+.+++.|++++. +.|+++... .+.|+.||+|+|.++.
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 456788898888888999987 566665321 1578999999998864
No 89
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=84.59 E-value=1.3 Score=41.34 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s 131 (267)
...++..|.+.+++.|++++. ++|++|... .++|+.||+|+|.+.
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 567889999999999999987 577666421 257899999999764
No 90
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=84.04 E-value=1.5 Score=43.79 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=40.7
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCccccccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGLESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~~~~ad~VV~aaG~~s~ 132 (267)
.++-..+...|.+++++.|++++. ++|+++.+...++|.||.|.|.+|.
T Consensus 93 ~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 93 GIGRKRLLNILQARCEELGVKLVFETEVPDDQALAADADLVIASDGLNSR 142 (765)
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhhhcCCCEEEEcCCCCHH
Confidence 355677889999999999999998 6888876544689999999999984
No 91
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=83.91 E-value=1.6 Score=40.07 Aligned_cols=67 Identities=24% Similarity=0.241 Sum_probs=50.9
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------c--cCCCEEEEccCcCchhhcCCC-Cceee-cceEEE
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------E--SEFDFVFNCAGLGAQALCRDR-KLTPI-RGQVIK 149 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------~--~~ad~VV~aaG~~s~~l~~~~-~l~p~-rg~~~~ 149 (267)
.-..|.++.....+.++++|+++.. +.|++++.. . +.++.||-|+|.-++.+..++ +..-- +|++++
T Consensus 204 Lp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V 282 (405)
T COG1252 204 LPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVV 282 (405)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEe
Confidence 3445677777777889999999998 689888653 2 789999999999999988874 54433 355543
No 92
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=83.78 E-value=1.5 Score=39.46 Aligned_cols=73 Identities=7% Similarity=-0.091 Sum_probs=48.0
Q ss_pred CCCcEECChhhhhcC-CCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc----------ccCCCEEE
Q psy5261 56 VPVYRDAQPDELVVG-NKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL----------ESEFDFVF 124 (267)
Q Consensus 56 g~~~~~l~~~el~~~-P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~----------~~~ad~VV 124 (267)
..++.+++++..... | .+ ..+..+..++..+..-+.+.+++.|++|+..+|+++... .+++|++|
T Consensus 25 ~~~I~li~~~~~~~~~~-~~---~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~Lv 100 (364)
T TIGR03169 25 GVRVTLINPSSTTPYSG-ML---PGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLS 100 (364)
T ss_pred CCEEEEECCCCCCcccc-hh---hHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEE
Confidence 345667776653322 2 11 012235667777777777778888999988788777532 36899999
Q ss_pred EccCcCch
Q psy5261 125 NCAGLGAQ 132 (267)
Q Consensus 125 ~aaG~~s~ 132 (267)
+|+|....
T Consensus 101 iAtG~~~~ 108 (364)
T TIGR03169 101 LDVGSTTP 108 (364)
T ss_pred EccCCCCC
Confidence 99997653
No 93
>PRK08163 salicylate hydroxylase; Provisional
Probab=83.35 E-value=2 Score=38.93 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=39.8
Q ss_pred eeeehHHHHHHHHHHHHhCC-cEEEE-EeeCCcccc------------ccCCCEEEEccCcCchh
Q psy5261 83 LVIENSDFLPWAMKRVSKQG-GKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G-~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~ 133 (267)
..++...+...|.+.+++.| ++++. ++|++++.. .++||.||.|.|.+|..
T Consensus 104 ~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 104 AVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred EEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 45788889999999988775 88887 577776432 25799999999999864
No 94
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=83.35 E-value=1.2 Score=40.88 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=35.8
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
.....++..|.+.++++|++|+. ++|++|... .+.|+.||+|||.++.
T Consensus 138 ~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 138 GGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp CHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred ccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 35677899999999999999998 688887432 2579999999999986
No 95
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=83.05 E-value=1.9 Score=37.12 Aligned_cols=79 Identities=11% Similarity=-0.094 Sum_probs=50.3
Q ss_pred hHhhhCCCcEECChhhhhcCCCCce-eE-E-Eeee--eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc---------
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYK-YG-S-YSET--LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL--------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~-~g-~-~~~~--~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~--------- 116 (267)
.+++.|.++.++++...-. .+. .. + .++. ..+.+..+...+.+.+++.|++++.++|.+++..
T Consensus 18 ~l~~~g~~v~lie~~~~gg---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~ 94 (300)
T TIGR01292 18 YAARANLKTLIIEGMEPGG---QLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTG 94 (300)
T ss_pred HHHHCCCCEEEEeccCCCc---ceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeC
Confidence 3456788888887654210 000 00 0 1121 2345567888888889999999987777665321
Q ss_pred ---ccCCCEEEEccCcCch
Q psy5261 117 ---ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 117 ---~~~ad~VV~aaG~~s~ 132 (267)
.+++|.||+|+|.+..
T Consensus 95 ~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 95 DGKEYTAKAVIIATGASAR 113 (300)
T ss_pred CCCEEEeCEEEECCCCCcc
Confidence 2579999999998653
No 96
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=83.01 E-value=1.6 Score=40.31 Aligned_cols=45 Identities=11% Similarity=-0.032 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc---c-------------ccCCCEEEEccCcCc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG---L-------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---~-------------~~~ad~VV~aaG~~s 131 (267)
...++..|.+.+++.|++|+. ++|++|.. . .+.|+.||+|+|.+.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 456889999999999999987 57776632 1 256899999999654
No 97
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=82.69 E-value=2.1 Score=36.82 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.8
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG 115 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~ 115 (267)
..|...++..|.+.+.++|++++. ++|.++..
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~ 128 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLIT 128 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEE
Confidence 357788999999999999999987 68888754
No 98
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=82.69 E-value=1.8 Score=40.79 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLG 130 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~ 130 (267)
..++.+|.+.++++|++|+. ++|++|... .++||.||+|++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 57899999999999999998 588776421 25799999999974
No 99
>PRK11445 putative oxidoreductase; Provisional
Probab=82.61 E-value=35 Score=30.44 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=35.0
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
..+|-..|-..|.+. .+.|++++. ++|++++.. .++||.||.|.|..|.
T Consensus 94 ~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 94 INIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred ccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 357877787777764 467888876 466555321 2579999999999874
No 100
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=81.77 E-value=1.9 Score=33.84 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=26.6
Q ss_pred HHHHHHHHHHH---hCCcEEEE--EeeCCcccc------------ccCCCEEEEccCc
Q psy5261 89 DFLPWAMKRVS---KQGGKFRR--GTVSSFSGL------------ESEFDFVFNCAGL 129 (267)
Q Consensus 89 ~~~~~L~~~~~---~~G~~~~~--~~V~~l~~~------------~~~ad~VV~aaG~ 129 (267)
.|+....+.+. ..|+++.. .+|++++.. .+.||+||+|+|.
T Consensus 98 ~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 98 EYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 34444444333 34777765 588888653 2589999999995
No 101
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=81.48 E-value=2.3 Score=39.46 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=45.6
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCchhhc
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~~l~ 135 (267)
|+-.-...+..+.+.++++|++|++ ++|.+++.. .+.+|+||+|.|-.++..+
T Consensus 168 GTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~ 234 (486)
T COG2509 168 GTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWF 234 (486)
T ss_pred CccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHH
Confidence 8888889999999999999999998 799887532 2689999999999887765
No 102
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=81.41 E-value=2.5 Score=35.65 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=33.2
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccccc--cCCCEEEE
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGLE--SEFDFVFN 125 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~~--~~ad~VV~ 125 (267)
.+.|+..++..|+.++-+.|++++. ..|+++...+ --|..|||
T Consensus 104 ~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvN 149 (262)
T COG1635 104 YVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVN 149 (262)
T ss_pred EEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEe
Confidence 5789999999999999999999998 6888875331 23455555
No 103
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=81.25 E-value=1.8 Score=42.04 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=36.3
Q ss_pred eehHHHHHHHHHHHHhCC-cEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQG-GKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G-~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
.++..+...|.+.++++| ++++. ++|+++... .+.|+.||+|||.++.
T Consensus 129 ~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 129 INGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 467788889988888876 99887 577665310 1579999999998875
No 104
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=81.07 E-value=1.9 Score=37.87 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=38.1
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
..++-..+.+.|.+.+++.|++++. ++|++++.. .++||.||-|-|.+|.
T Consensus 106 ~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 106 HVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp EEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred hhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 4456667889999999999999998 688766432 2579999999999984
No 105
>PRK06175 L-aspartate oxidase; Provisional
Probab=80.86 E-value=2.7 Score=39.06 Aligned_cols=47 Identities=9% Similarity=-0.070 Sum_probs=35.3
Q ss_pred ehHHHHHHHHHHHHh-CCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch
Q psy5261 86 ENSDFLPWAMKRVSK-QGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 86 dp~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~ 132 (267)
....++..|.+.+++ .|++|++ ++|++|... .+.|+.||+|||....
T Consensus 126 ~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 126 TGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 346788889888875 5999988 677776321 1579999999998654
No 106
>PRK06834 hypothetical protein; Provisional
Probab=79.36 E-value=2.1 Score=40.39 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..+-..|.+.+++.|+++++ ++|++++.. .++||.||.|.|.+|.
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 45667788888888999987 688777532 2679999999999983
No 107
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=79.32 E-value=2.4 Score=40.77 Aligned_cols=47 Identities=11% Similarity=-0.106 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCchh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~~ 133 (267)
...++..|.+.+++.|++|+. +.+++|... .+.|+.||+|||..+..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 467889999999999999987 577766421 15799999999998653
No 108
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=79.01 E-value=2.7 Score=41.31 Aligned_cols=45 Identities=9% Similarity=-0.104 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
..++..|.+.+++.|++|++ +.|++|... .+.|+.||+|||.+..
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 34667888889999999987 677776421 1469999999998775
No 109
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=78.92 E-value=2.7 Score=40.39 Aligned_cols=81 Identities=10% Similarity=-0.044 Sum_probs=50.2
Q ss_pred hHhhhCCCcEECChhhhhcC-CCCceeEE-Eeee-eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-----------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-NKTYKYGS-YSET-LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL----------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P~~~~~g~-~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~----------- 116 (267)
.+++.|.++-++++..+-.. . ..... .++. ....+..++..+.+.+++.|++++.++|+++...
T Consensus 22 ~lar~g~~V~liE~~~~GG~~~--~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g 99 (555)
T TIGR03143 22 YAGRAKLDTLIIEKDDFGGQIT--ITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG 99 (555)
T ss_pred HHHHCCCCEEEEecCCCCceEE--eccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC
Confidence 34566778878876432111 0 00001 1121 2345678888998889999999976666665421
Q ss_pred ccCCCEEEEccCcCchh
Q psy5261 117 ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 117 ~~~ad~VV~aaG~~s~~ 133 (267)
.+.++.||+|||++...
T Consensus 100 ~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 100 DYKTLAVLIATGASPRK 116 (555)
T ss_pred EEEEeEEEECCCCccCC
Confidence 25788999999998654
No 110
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=78.11 E-value=2.6 Score=40.59 Aligned_cols=45 Identities=9% Similarity=-0.116 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCC-EEEEccCcCc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFD-FVFNCAGLGA 131 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad-~VV~aaG~~s 131 (267)
...++..|.+.++++|++|+. ++|+++... .+.++ .||+|||.++
T Consensus 213 G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 213 GNALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 356788899999999999987 577776421 13564 7999999997
No 111
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.73 E-value=3 Score=40.20 Aligned_cols=47 Identities=11% Similarity=-0.031 Sum_probs=36.9
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCch
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~ 132 (267)
....++..|.+.+++.|++++. +.+++|.. . .+.|+.||+|||.+..
T Consensus 124 tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 124 TGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred CHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 3567899999999999999987 57766642 1 1579999999999875
No 112
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.67 E-value=6.8 Score=37.47 Aligned_cols=46 Identities=11% Similarity=-0.081 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+++.|++++. ++|+++... .+.|+.||+|||....
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 466888899888889999887 577665320 1578999999998764
No 113
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=77.01 E-value=3.7 Score=38.49 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=34.8
Q ss_pred ehHHHHHHHHHHHHhCCcE--EEE-EeeCCcccc-----------c-----cCCCEEEEccCcCchh
Q psy5261 86 ENSDFLPWAMKRVSKQGGK--FRR-GTVSSFSGL-----------E-----SEFDFVFNCAGLGAQA 133 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~--~~~-~~V~~l~~~-----------~-----~~ad~VV~aaG~~s~~ 133 (267)
....++.+|.+.+++.|+. ++. ++|++++.. . ..+|+||+|+|..+..
T Consensus 109 ~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P 175 (461)
T PLN02172 109 SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEP 175 (461)
T ss_pred CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCC
Confidence 4467888888899999987 555 577777532 0 2479999999987543
No 114
>PRK07512 L-aspartate oxidase; Provisional
Probab=76.95 E-value=3.5 Score=39.22 Aligned_cols=47 Identities=6% Similarity=-0.139 Sum_probs=36.0
Q ss_pred ehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch
Q psy5261 86 ENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~ 132 (267)
.+..++..|.+.++++ |++++. +.|+++... .+.|+.||+|||..+.
T Consensus 134 ~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 134 AGAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 4567899999988875 899988 577776321 1579999999999764
No 115
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=76.33 E-value=3.5 Score=40.16 Aligned_cols=46 Identities=9% Similarity=-0.117 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+++.|++|+. +.+++|.. . .+.|+.||+|||.+..
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 467889999999999999987 67777542 1 1479999999998764
No 116
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=75.03 E-value=4.1 Score=34.25 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=36.9
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcc--c-c----------------------ccCCCEEEEccCcCchh
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFS--G-L----------------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~--~-~----------------------~~~ad~VV~aaG~~s~~ 133 (267)
.+.|+..++..|+..+-+.|++++. ..|+++. . . .++|+.||-|||..+.-
T Consensus 91 ~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 91 YVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp EES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred EEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 4689999999999999889999998 6777762 1 1 25788999999987643
No 117
>PRK08071 L-aspartate oxidase; Provisional
Probab=74.36 E-value=4.5 Score=38.41 Aligned_cols=48 Identities=10% Similarity=0.005 Sum_probs=36.2
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
-..+..++..|.+.++ .|++|++ +.|+++... .+.|+.||+|||.++.
T Consensus 126 d~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 126 DATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred CCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 3446778889988776 6999987 677776321 1479999999999875
No 118
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=74.31 E-value=4 Score=37.82 Aligned_cols=48 Identities=8% Similarity=-0.042 Sum_probs=35.0
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
+...++...|.+.+++.|++++. ++|.+++.. .++||.||+|+|....
T Consensus 256 lpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 256 VPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred CchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCccc
Confidence 33456788899999999999987 577665421 1578999999997643
No 119
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=74.19 E-value=3.7 Score=37.59 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=36.6
Q ss_pred eeeehHHHHHHHHHHHHh-CCcEEEEEeeCCcccc-------------ccCCCEEEEccCc
Q psy5261 83 LVIENSDFLPWAMKRVSK-QGGKFRRGTVSSFSGL-------------ESEFDFVFNCAGL 129 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~-~G~~~~~~~V~~l~~~-------------~~~ad~VV~aaG~ 129 (267)
.++|-.+|-+++.+.+++ .++++++.+|++|... .+.||.||+|||.
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 789999999999999988 4688887788888532 2579999999999
No 120
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=73.68 E-value=7.3 Score=38.04 Aligned_cols=46 Identities=13% Similarity=0.000 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhC--------C-----cEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQ--------G-----GKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~--------G-----~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+++. | ++++. +.|+++... .+.|+.||+|||.+..
T Consensus 137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 456888888888776 7 88887 577666321 1579999999998653
No 121
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=73.44 E-value=5 Score=38.93 Aligned_cols=47 Identities=13% Similarity=-0.043 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------------ccCCCEEEEccCcCchh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------------~~~ad~VV~aaG~~s~~ 133 (267)
...++..|.+.+++.|++|+. +.|++|... .+.|+.||+|||.+...
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 356888999999999999987 577665321 14789999999988754
No 122
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=73.40 E-value=4.9 Score=39.36 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 91 LPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 91 ~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
...|.+.+++.|++|+. +.|++|... .+.|+.||+|||.++.
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 36677778888999987 677776321 1579999999999775
No 123
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=71.59 E-value=5.6 Score=38.37 Aligned_cols=46 Identities=11% Similarity=-0.042 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCC-CEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEF-DFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~a-d~VV~aaG~~s~ 132 (267)
...++..|.+.+++.|++|+. ++|++|... .+.| +.||+|||-+..
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 345677888889999999987 688776431 1345 689999998874
No 124
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=71.57 E-value=6 Score=38.73 Aligned_cols=46 Identities=9% Similarity=-0.119 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+++.|++|+. +.+++|.. . .+.|+.||+|||.+..
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 456889999999889999986 56666431 1 1479999999998864
No 125
>PRK05568 flavodoxin; Provisional
Probab=71.07 E-value=12 Score=28.46 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=41.9
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCchhh
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~~l 134 (267)
+.|.+.+.|..+++.++++.+++.|+++.-..+.+..... ..+|.||+++..|...+
T Consensus 6 IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~ 63 (142)
T PRK05568 6 IIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEV 63 (142)
T ss_pred EEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCccc
Confidence 4566699999999999999999999866433343322112 37999999999986543
No 126
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=70.89 E-value=99 Score=29.49 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhC-CcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 89 DFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 89 ~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
.+-..|.+.+++. |++++. ++|++++.. .++||.||.|.|.+|.
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 3456777777765 688877 577766421 2579999999999985
No 127
>PRK08275 putative oxidoreductase; Provisional
Probab=70.83 E-value=5.7 Score=38.11 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~ 132 (267)
...+...|.+.+++.|++++. +.|++|.. . .+.|+.||+|||..+.
T Consensus 136 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 136 GHDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred hHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 346788999999999999987 57776631 1 1479999999999764
No 128
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=70.61 E-value=5.6 Score=38.54 Aligned_cols=46 Identities=7% Similarity=-0.143 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+++.|++++. +.+++|.. . .+.|+.||+|||.++.
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 467888999988889999887 57666542 1 1469999999999875
No 129
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=70.51 E-value=5.8 Score=38.24 Aligned_cols=45 Identities=13% Similarity=-0.090 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s 131 (267)
...++..|.+.+++.|++|+. +.++++... .+.|+.||+|||...
T Consensus 135 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 135 GMALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 456788899888888999987 566665421 147999999999876
No 130
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=70.12 E-value=7.3 Score=35.22 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch-hhcCCCCceeecc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ-ALCRDRKLTPIRG 145 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~-~l~~~~~l~p~rg 145 (267)
......+.+.+++.|++++. ++|.+++.. .+.||.||+|+|.... .+..+..+.-.+|
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~g 254 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRG 254 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCC
Confidence 34556677888899999987 567665421 2679999999998765 3444333333345
No 131
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=69.73 E-value=5.1 Score=38.53 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCC-CEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEF-DFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~a-d~VV~aaG~~s~ 132 (267)
...++..|.+.+++.|++++. ++|++|... .+.| +.||+|||..+.
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 456788888999999999987 577776531 2467 479999998875
No 132
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=69.66 E-value=13 Score=38.42 Aligned_cols=76 Identities=20% Similarity=0.136 Sum_probs=49.2
Q ss_pred hhHhhhCCCcEECChhhhhcCCCCceeEEE-e-eeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcc----cc--ccCCC
Q psy5261 50 ASIENLVPVYRDAQPDELVVGNKTYKYGSY-S-ETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFS----GL--ESEFD 121 (267)
Q Consensus 50 ~~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~-~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~----~~--~~~ad 121 (267)
..+++.|.++.+++..+ ..+|.. + -+..-.|..++....+.+++.|++|+...+.+.. .. ...+|
T Consensus 447 ~~La~~G~~VtV~E~~~-------~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~~~~~~~l~~~~~yD 519 (1006)
T PRK12775 447 ADLVKYGVDVTVYEALH-------VVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTFTVPQLMNDKGFD 519 (1006)
T ss_pred HHHHHcCCcEEEEecCC-------CCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCCccCHHHHhhccCCC
Confidence 35577788888887542 113321 2 1223456788888999999999999875332221 11 24689
Q ss_pred EEEEccCcCch
Q psy5261 122 FVFNCAGLGAQ 132 (267)
Q Consensus 122 ~VV~aaG~~s~ 132 (267)
+||+|+|++.+
T Consensus 520 aViIATGa~~p 530 (1006)
T PRK12775 520 AVFLGVGAGAP 530 (1006)
T ss_pred EEEEecCCCCC
Confidence 99999999753
No 133
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=69.57 E-value=6.5 Score=38.02 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=36.2
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCcc--c----c----------------ccCCCEEEEccCcCch
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFS--G----L----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~--~----~----------------~~~ad~VV~aaG~~s~ 132 (267)
....++..|.+.+++.|++|+. +.|++|. . . .+.|+.||+|||.++.
T Consensus 138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 3567889999999999999987 5666652 1 1 1479999999999874
No 134
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=68.88 E-value=16 Score=37.61 Aligned_cols=76 Identities=12% Similarity=0.013 Sum_probs=49.5
Q ss_pred hhHhhhCCCcEECChhhhhcCCCCceeEE-Eee-eeeeehHHHHHHHHHHHHhCCcEEEEE-eeC-Ccccc---ccCCCE
Q psy5261 50 ASIENLVPVYRDAQPDELVVGNKTYKYGS-YSE-TLVIENSDFLPWAMKRVSKQGGKFRRG-TVS-SFSGL---ESEFDF 122 (267)
Q Consensus 50 ~~~~~~g~~~~~l~~~el~~~P~~~~~g~-~~~-~~~vdp~~~~~~L~~~~~~~G~~~~~~-~V~-~l~~~---~~~ad~ 122 (267)
..++..|.++.++++.. ..+|. .|. +..--|..++....+.+++.|++|+.. .|. ++... ...+|+
T Consensus 323 ~~Lar~G~~VtVfE~~~-------~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~~l~~~~yDA 395 (944)
T PRK12779 323 YLLAVEGFPVTVFEAFH-------DLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLEDLKAAGFWK 395 (944)
T ss_pred HHHHHCCCeEEEEeeCC-------CCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHHHhccccCCE
Confidence 35677899988887542 12342 221 223346778888888899999999874 442 12111 246999
Q ss_pred EEEccCcCch
Q psy5261 123 VFNCAGLGAQ 132 (267)
Q Consensus 123 VV~aaG~~s~ 132 (267)
||+|+|++.+
T Consensus 396 V~LAtGA~~p 405 (944)
T PRK12779 396 IFVGTGAGLP 405 (944)
T ss_pred EEEeCCCCCC
Confidence 9999999854
No 135
>PRK07190 hypothetical protein; Provisional
Probab=68.61 E-value=6.2 Score=37.25 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
.+-..|.+.+++.|++++. ++|++++.. .++|+.||.|.|.+|
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 3455667788889999988 688887532 268999999999987
No 136
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=67.49 E-value=16 Score=27.59 Aligned_cols=54 Identities=7% Similarity=0.054 Sum_probs=40.0
Q ss_pred EeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCch
Q psy5261 79 YSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQ 132 (267)
Q Consensus 79 ~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~ 132 (267)
.|.+.+.|..+++.++++.+...|+++....+.+..... ..+|.||+++..|..
T Consensus 4 iy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~ 58 (140)
T TIGR01753 4 VYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGD 58 (140)
T ss_pred EEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCC
Confidence 344578899999999999999989877654444433222 369999999998764
No 137
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=66.51 E-value=1.1e+02 Score=28.33 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCC---ceeeeccccCCC-CC------------------eEEE-eCCCchhhhccHHHH
Q psy5261 190 ISRHDTASILERCYSLLPRLEEAP---VLYEWCGLRPHR-SL------------------VIHN-YGHGGYGVTTAPGTS 246 (267)
Q Consensus 190 ~~~~~~~~l~~~~~~~~P~l~~~~---~~~~w~G~rp~~-pd------------------l~~~-~G~gg~G~t~a~~~a 246 (267)
.+++..+.+++.+.++|. +...+ .+..|....|.. .+ |+++ ..+.|.|+--+-..|
T Consensus 372 ~dee~~~~~~~~L~~~lG-~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg 450 (463)
T PRK12416 372 SEEELVRVALYDIEKSLG-IKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNG 450 (463)
T ss_pred CHHHHHHHHHHHHHHHhC-CCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHH
Confidence 345556678888888885 32211 255677555543 11 5554 446778888888899
Q ss_pred HHHHHHHHhhhC
Q psy5261 247 RYAVQLVKQALD 258 (267)
Q Consensus 247 ~~la~li~~~l~ 258 (267)
+.+|+.|.+.+.
T Consensus 451 ~~aA~~i~~~~~ 462 (463)
T PRK12416 451 KNTANEIIATLN 462 (463)
T ss_pred HHHHHHHHHHhh
Confidence 999988876553
No 138
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=65.97 E-value=8.2 Score=34.14 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=40.9
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-----------ccCCCEEEEccCcCchhh
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL-----------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~-----------~~~ad~VV~aaG~~s~~l 134 (267)
+.+....+...+.+.+++.|+++....|..++.. .++|+.||+|||...+.+
T Consensus 56 ~~~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 56 GGILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKL 118 (305)
T ss_pred cCCchHHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCC
Confidence 5577888899999999999999887555544322 268999999999988776
No 139
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=64.79 E-value=9.2 Score=37.07 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+++.|++++. +.++++.. . .+.|+.||+|||..+.
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 356888999988889999987 56655431 0 1469999999998764
No 140
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=64.76 E-value=10 Score=36.52 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=50.0
Q ss_pred EECChhhhhcC-C------CCc--eeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------
Q psy5261 60 RDAQPDELVVG-N------KTY--KYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------- 116 (267)
Q Consensus 60 ~~l~~~el~~~-P------~~~--~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------- 116 (267)
.+.|+.|++.. - .++ ..|+.++.+. .-..++.-|.+.++++||+|+. ++|++|...
T Consensus 190 ~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~yn-qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~ 268 (576)
T PRK13977 190 KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYN-QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHL 268 (576)
T ss_pred hhhHHHHHHHHHHHHHHhhccCCccccccCCCCC-chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEE
Confidence 56777777653 2 011 2455565544 3367889999999999999998 688876431
Q ss_pred ---------c-cCCCEEEEccCcCch
Q psy5261 117 ---------E-SEFDFVFNCAGLGAQ 132 (267)
Q Consensus 117 ---------~-~~ad~VV~aaG~~s~ 132 (267)
. ..+|.||+++|..+.
T Consensus 269 ~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 269 TRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred EeCCceeEEEecCCCEEEEeCCcCcc
Confidence 0 368999999998764
No 141
>PRK07804 L-aspartate oxidase; Provisional
Probab=64.69 E-value=11 Score=36.07 Aligned_cols=47 Identities=11% Similarity=-0.094 Sum_probs=36.1
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------------ccCCCEEEEccCcCch
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------------~~~ad~VV~aaG~~s~ 132 (267)
....+...|.+.+++.|++++. +.|+++... .+.|+.||+|+|.++.
T Consensus 142 ~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 142 TGAEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 3567889999999999999887 576666310 1468999999999874
No 142
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=64.56 E-value=8.6 Score=36.52 Aligned_cols=48 Identities=10% Similarity=-0.005 Sum_probs=37.9
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..+..+...|.+.+++.|++++. ++|.++... .+++|.||+|+|...+
T Consensus 263 ~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 263 TEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 46778889999999999999987 577776431 2579999999998654
No 143
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.36 E-value=7.6 Score=36.64 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGL 129 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~ 129 (267)
..++.+|++.++++|++|+. .+|+.|... .+++|+||.++..
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 57899999999999999998 689888642 2568999998887
No 144
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=62.88 E-value=14 Score=34.03 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc--------ccCCCEEEEccCcCchhhcCCC
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------ESEFDFVFNCAGLGAQALCRDR 138 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------~~~ad~VV~aaG~~s~~l~~~~ 138 (267)
.+...+.+.++++|++++. ++|.++... .+.+|.||.|+|.-...+..++
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~ 287 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQL 287 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhc
Confidence 4666777888999999996 577766432 3689999999997766555443
No 145
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=62.46 E-value=10 Score=34.97 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch-hhcCCCC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ-ALCRDRK 139 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~-~l~~~~~ 139 (267)
..+...+.+.++++|++++. ++|.+++.. .+.||.||+|+|.... .++.+..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~g 255 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTG 255 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcC
Confidence 45677788888999999987 577666421 2689999999998754 4444333
No 146
>PRK05569 flavodoxin; Provisional
Probab=61.28 E-value=23 Score=26.90 Aligned_cols=56 Identities=9% Similarity=-0.172 Sum_probs=40.4
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCchh
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQA 133 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~~ 133 (267)
+.|.+.+.|...++..+++.+++.|+++.-..+....... ..+|.||+++-.|...
T Consensus 6 iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~ 62 (141)
T PRK05569 6 IIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNN 62 (141)
T ss_pred EEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCC
Confidence 3455578999999999999998889876433444332222 3799999999987654
No 147
>PRK10262 thioredoxin reductase; Provisional
Probab=60.95 E-value=13 Score=32.59 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=34.0
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
.++...+...+.+.+...+.++...+|..++.. .+++|.||+|+|.+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 59 DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR 118 (321)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC
Confidence 356666777778888888887766444443211 2579999999999854
No 148
>PRK09897 hypothetical protein; Provisional
Probab=60.94 E-value=10 Score=36.28 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCC--cEEEE-EeeCCcccc-------------ccCCCEEEEccCcCchh
Q psy5261 90 FLPWAMKRVSKQG--GKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 90 ~~~~L~~~~~~~G--~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~~ 133 (267)
....+.+.+++.| ++++. ++|++++.. .+.||.||+|+|...+.
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~ 168 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPD 168 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCC
Confidence 3444556666777 66665 588887532 14699999999975543
No 149
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=60.87 E-value=10 Score=36.02 Aligned_cols=48 Identities=6% Similarity=-0.056 Sum_probs=37.0
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
.....+...+.+.+++.|++++. ++|.++... .+.+|.+|+|+|...+
T Consensus 264 ~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 264 TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 45677888898999999999987 577766321 2679999999998643
No 150
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=60.77 E-value=1.4e+02 Score=27.53 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCC--CCceeeeccccCCCC-------------------CeEEE-eCCCchhhhccHHHHH
Q psy5261 190 ISRHDTASILERCYSLLPRLEE--APVLYEWCGLRPHRS-------------------LVIHN-YGHGGYGVTTAPGTSR 247 (267)
Q Consensus 190 ~~~~~~~~l~~~~~~~~P~l~~--~~~~~~w~G~rp~~p-------------------dl~~~-~G~gg~G~t~a~~~a~ 247 (267)
.+++..+.+++.+.++++.-.+ .-.+..|-...|..+ +|+++ ..+.|.|+--+...|+
T Consensus 371 ~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~ 450 (462)
T TIGR00562 371 SENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGK 450 (462)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHH
Confidence 4456677888899888863211 113456777666632 25655 2345678888889999
Q ss_pred HHHHHHHhhh
Q psy5261 248 YAVQLVKQAL 257 (267)
Q Consensus 248 ~la~li~~~l 257 (267)
.+|+.+...+
T Consensus 451 ~~a~~~~~~~ 460 (462)
T TIGR00562 451 AAASDVLTFL 460 (462)
T ss_pred HHHHHHHHhh
Confidence 9998887665
No 151
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=60.18 E-value=10 Score=36.79 Aligned_cols=44 Identities=7% Similarity=-0.074 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCC-EEEEccCcCch
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFD-FVFNCAGLGAQ 132 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad-~VV~aaG~~s~ 132 (267)
.++..|.+.+++.|++|+. ++|++|... .+.|+ .||+|||.+..
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 3555677788889999987 677777431 14676 69999998874
No 152
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=59.64 E-value=15 Score=34.19 Aligned_cols=42 Identities=7% Similarity=0.016 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCcEEEEEeeCCccc---------cccCCCEEEEccCcCc
Q psy5261 90 FLPWAMKRVSKQGGKFRRGTVSSFSG---------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 90 ~~~~L~~~~~~~G~~~~~~~V~~l~~---------~~~~ad~VV~aaG~~s 131 (267)
+...+.+.+++.|++++..++..+.. ..+++|+||+|||...
T Consensus 92 ~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcC
Confidence 34455566778899998755433321 1268999999999754
No 153
>PRK07588 hypothetical protein; Provisional
Probab=58.80 E-value=11 Score=34.07 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=32.6
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
+.=..+...|.+.+ ..|+++++ ++|++++.. .+++|.||.|.|.+|.
T Consensus 100 i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 100 LPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 33344556666654 34788887 688877532 2579999999999874
No 154
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=58.78 E-value=15 Score=32.84 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc--------ccCCCEEEEccCcCchhhc
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------ESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------~~~ad~VV~aaG~~s~~l~ 135 (267)
.+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|......+
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l 247 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWL 247 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHH
Confidence 4556777888899999998 577766421 3689999999998765443
No 155
>PRK06126 hypothetical protein; Provisional
Probab=58.69 E-value=10 Score=36.10 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=34.6
Q ss_pred eehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
++-..+...|.+.+++. |+++++ ++|++++.. .++||.||.|.|.+|.
T Consensus 123 i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 123 IPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 33344666778887764 789987 577776421 2579999999999984
No 156
>PLN02546 glutathione reductase
Probab=58.65 E-value=15 Score=35.32 Aligned_cols=41 Identities=7% Similarity=-0.057 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCcEEEEEeeCCcc--cc-----ccCCCEEEEccCcCc
Q psy5261 91 LPWAMKRVSKQGGKFRRGTVSSFS--GL-----ESEFDFVFNCAGLGA 131 (267)
Q Consensus 91 ~~~L~~~~~~~G~~~~~~~V~~l~--~~-----~~~ad~VV~aaG~~s 131 (267)
...+.+.+++.|++|+..+++.+. .. .+.+|+||+|||...
T Consensus 181 ~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p 228 (558)
T PLN02546 181 TGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRP 228 (558)
T ss_pred HHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCC
Confidence 345556677789999974333222 11 368999999999754
No 157
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=58.36 E-value=1.4e+02 Score=26.92 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=38.3
Q ss_pred eeeehHHHHHHHHHHHHhCC-cEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQG-GKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G-~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+.=..+...|.+.+.+.+ ++++. ++|+.++.. .++||.||-|=|.+|.
T Consensus 99 ~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 99 YVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred EEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence 34555667888999998877 89988 688777532 1579999999999974
No 158
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=56.96 E-value=17 Score=33.86 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=45.2
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEEE-ee-eeeeehHHHHHHHHHHHHhCCcEEEE-EeeCC-c--cccccCCCEEE
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGSY-SE-TLVIENSDFLPWAMKRVSKQGGKFRR-GTVSS-F--SGLESEFDFVF 124 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~~-~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~-l--~~~~~~ad~VV 124 (267)
.+++.|.++.++++... .+|.. +. +..-.+..++..+.+.+++.|++|+. +.+.. + +.....+|+||
T Consensus 158 ~l~~~g~~V~lie~~~~-------~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~~~d~vv 230 (457)
T PRK11749 158 RLARKGYDVTIFEARDK-------AGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDITLDELRAGYDAVF 230 (457)
T ss_pred HHHhCCCeEEEEccCCC-------CCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCccCHHHHHhhCCEEE
Confidence 44566777777664421 12211 11 12223557777788888889999987 34422 1 11125799999
Q ss_pred EccCcCch
Q psy5261 125 NCAGLGAQ 132 (267)
Q Consensus 125 ~aaG~~s~ 132 (267)
+|+|.+..
T Consensus 231 lAtGa~~~ 238 (457)
T PRK11749 231 IGTGAGLP 238 (457)
T ss_pred EccCCCCC
Confidence 99999743
No 159
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=56.77 E-value=15 Score=33.82 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=37.0
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc--------------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL--------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~--------------------~~~ad~VV~aaG~~s~ 132 (267)
+..++.....-+...+++.|++|...+|++|+.. .+.+|++|+|+|....
T Consensus 57 g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 57 GTLEFRSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred cCCChHHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 5666677776677777778898888777766421 2678999999999753
No 160
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=56.49 E-value=15 Score=35.76 Aligned_cols=46 Identities=9% Similarity=-0.154 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHh----CCcEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSK----QGGKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~----~G~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+++ .|++++. ++|++|.. . .+.|+.||+|||.++.
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGN 197 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence 34566666665544 3899887 57776631 1 1479999999998754
No 161
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=56.44 E-value=16 Score=33.23 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCchh-hcCCCCc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQA-LCRDRKL 140 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~~-l~~~~~l 140 (267)
+..+...+.+.++++|++++. ++|++++.. .+.||.||+|+|...+. |.....+
T Consensus 185 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 185 PPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANL 251 (396)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCC
Confidence 445566778888899999997 566665421 25799999999987653 4433333
No 162
>PRK14694 putative mercuric reductase; Provisional
Probab=56.43 E-value=20 Score=33.44 Aligned_cols=46 Identities=7% Similarity=-0.036 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCchh
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~~ 133 (267)
..+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|.....
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCc
Confidence 35677788888999999987 577666421 26899999999988654
No 163
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=56.11 E-value=16 Score=35.41 Aligned_cols=46 Identities=11% Similarity=-0.119 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+.+. |++++. +.++++... .+.|+.||+|+|.++.
T Consensus 132 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 132 GFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 356778888877765 788876 566665421 2579999999998775
No 164
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=55.95 E-value=13 Score=35.78 Aligned_cols=45 Identities=7% Similarity=-0.146 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCC-EEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFD-FVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad-~VV~aaG~~s~ 132 (267)
..+...|.+.+++.|++++. ++|++|... .+.|+ .||+|||....
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 45677788888899999987 577776431 15675 69999998764
No 165
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=55.38 E-value=15 Score=33.99 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCchh
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~~ 133 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.....
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCC
Confidence 45677888889999999997 567666421 25799999999988654
No 166
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.03 E-value=14 Score=35.56 Aligned_cols=46 Identities=11% Similarity=-0.058 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHh-CCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSK-QGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+++ .|++++. +.|+++... .+.|+.||+|||..+.
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 35578888888866 5899877 466555210 1579999999999854
No 167
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=53.77 E-value=20 Score=34.74 Aligned_cols=46 Identities=11% Similarity=-0.161 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.+.+. |++++. +.++++... .+.|+.||+|||.++.
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 467888998888764 788876 566665421 1579999999999875
No 168
>PRK08013 oxidoreductase; Provisional
Probab=53.35 E-value=19 Score=32.76 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=37.3
Q ss_pred eeehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
.++-..+...|.+.+++. |++++. ++|++++.. .++||.||-|-|.+|.
T Consensus 107 ~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 107 IIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred EEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 455566778888888875 799987 577776431 2689999999999974
No 169
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=52.89 E-value=32 Score=27.69 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=39.1
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCchhhc
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~~l~ 135 (267)
+.|.+...+..+++.++++.+.. |..+.-.++....... ..+|.||++++.|.....
T Consensus 5 IvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~ 62 (177)
T PRK11104 5 ILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFH 62 (177)
T ss_pred EEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcC
Confidence 45666888999999999999887 7654332333322112 368999999998876543
No 170
>PRK14727 putative mercuric reductase; Provisional
Probab=52.86 E-value=17 Score=34.12 Aligned_cols=45 Identities=13% Similarity=-0.047 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCchh
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~~ 133 (267)
.+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.+.+.
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANT 285 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCc
Confidence 4567778888999999987 577666421 25799999999998753
No 171
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=52.86 E-value=59 Score=30.54 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhh-CCCCCCCCcee------------------ee----------ccccCCC-----CCeEEEeC--CCch
Q psy5261 194 DTASILERCYSL-LPRLEEAPVLY------------------EW----------CGLRPHR-----SLVIHNYG--HGGY 237 (267)
Q Consensus 194 ~~~~l~~~~~~~-~P~l~~~~~~~------------------~w----------~G~rp~~-----pdl~~~~G--~gg~ 237 (267)
..+.+++.+.++ +|++.+. ++. .+ ..+||.. ++||++.+ |-|.
T Consensus 394 ~~~~il~~l~~~~~p~l~~~-i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG~ 472 (502)
T TIGR02734 394 YRDRILAYLEERAIPGLRDR-IVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGA 472 (502)
T ss_pred HHHHHHHHHHHhcCCChhHh-eEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCCC
Confidence 356788999998 9987532 110 11 1245532 24887722 4578
Q ss_pred hhhccHHHHHHHHHHHHhhhCC
Q psy5261 238 GVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 238 G~t~a~~~a~~la~li~~~l~~ 259 (267)
|+..+...|+.+|+.|++.+++
T Consensus 473 Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 473 GVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred CHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999998765
No 172
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=52.80 E-value=17 Score=34.58 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHh-CCcEEEE-EeeCCcccc----------------ccCCC-EEEEccCcCc
Q psy5261 88 SDFLPWAMKRVSK-QGGKFRR-GTVSSFSGL----------------ESEFD-FVFNCAGLGA 131 (267)
Q Consensus 88 ~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~~----------------~~~ad-~VV~aaG~~s 131 (267)
..++..|.+.+.+ .|++++. ++|++|... .+.|+ .||+|||.+.
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 4567777777665 4999987 677776431 25675 7999999984
No 173
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=52.33 E-value=4.7 Score=37.33 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcC
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLG 130 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~ 130 (267)
..+||..+-..|.+.+++.|++++. +.|.++... .++|+.||-|||-.
T Consensus 85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDG 149 (428)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4688888888888888888999987 577776532 26899999999953
No 174
>PRK07395 L-aspartate oxidase; Provisional
Probab=51.48 E-value=21 Score=34.35 Aligned_cols=46 Identities=13% Similarity=-0.046 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhC-CcEEEE-EeeCCccc----c--------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSG----L--------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~----~--------------~~~ad~VV~aaG~~s~ 132 (267)
...++..|.+.++++ |++++. +.|++|.. . .+.|+.||+|||....
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 356788888888754 999988 67777732 1 1479999999998643
No 175
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=50.12 E-value=16 Score=33.01 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=33.7
Q ss_pred eeeehHHHHHH-HHHHHHhCCcEEEE-EeeCCcccc---------ccCCCEEEEccCcCc
Q psy5261 83 LVIENSDFLPW-AMKRVSKQGGKFRR-GTVSSFSGL---------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 83 ~~vdp~~~~~~-L~~~~~~~G~~~~~-~~V~~l~~~---------~~~ad~VV~aaG~~s 131 (267)
+..++..+... ..+.+++.|++++. ++|+++... .+.+|++|+|||...
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 52 QGQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASA 111 (377)
T ss_pred CCCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEECCeEEeCCEEEECCCCCC
Confidence 34455555543 44556778999986 578776532 368999999999864
No 176
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=50.00 E-value=42 Score=33.02 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=46.3
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEEE-ee-eeeeehHHHHHHHHHHHHhCCcEEEEEeeCCc--c--ccccCCCEEE
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGSY-SE-TLVIENSDFLPWAMKRVSKQGGKFRRGTVSSF--S--GLESEFDFVF 124 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~~-~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l--~--~~~~~ad~VV 124 (267)
.++..|.++.++++.+- .+|.. +. +..-.|..++....+.+++.|++++...+.+. . .....+|+||
T Consensus 211 ~La~~G~~Vtv~e~~~~-------~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~~~~~~~DaVi 283 (652)
T PRK12814 211 YLLRKGHDVTIFDANEQ-------AGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLEELQKEFDAVL 283 (652)
T ss_pred HHHHCCCcEEEEecCCC-------CCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHHHHHhhcCEEE
Confidence 45667888877775431 12221 11 12234667777778888899999987433222 1 1123699999
Q ss_pred EccCcCch
Q psy5261 125 NCAGLGAQ 132 (267)
Q Consensus 125 ~aaG~~s~ 132 (267)
+|+|.+..
T Consensus 284 lAtGa~~~ 291 (652)
T PRK12814 284 LAVGAQKA 291 (652)
T ss_pred EEcCCCCC
Confidence 99999753
No 177
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=49.88 E-value=30 Score=32.25 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=45.5
Q ss_pred hhHhhhCCCcEECChhhhhcCCCCceeEEE-e--eeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCc--cc--cccCCCE
Q psy5261 50 ASIENLVPVYRDAQPDELVVGNKTYKYGSY-S--ETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSF--SG--LESEFDF 122 (267)
Q Consensus 50 ~~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~--~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l--~~--~~~~ad~ 122 (267)
..+++.|.++.++++.+- | +|.. + +...+ +..++....+.+++.|++|+...+.+. .. ....+|+
T Consensus 150 ~~l~~~G~~V~vie~~~~---~----GG~l~~gip~~~~-~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~~yd~ 221 (449)
T TIGR01316 150 SELAKAGHSVTVFEALHK---P----GGVVTYGIPEFRL-PKEIVVTEIKTLKKLGVTFRMNFLVGKTATLEELFSQYDA 221 (449)
T ss_pred HHHHHCCCcEEEEecCCC---C----CcEeeecCCCccC-CHHHHHHHHHHHHhCCcEEEeCCccCCcCCHHHHHhhCCE
Confidence 345677888888876431 2 2221 1 11222 356666677778889999987432221 11 1246899
Q ss_pred EEEccCcCchh
Q psy5261 123 VFNCAGLGAQA 133 (267)
Q Consensus 123 VV~aaG~~s~~ 133 (267)
||+|+|++.+.
T Consensus 222 viiAtGa~~p~ 232 (449)
T TIGR01316 222 VFIGTGAGLPK 232 (449)
T ss_pred EEEeCCCCCCC
Confidence 99999986433
No 178
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=49.69 E-value=10 Score=38.14 Aligned_cols=49 Identities=14% Similarity=0.016 Sum_probs=34.6
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------ccCCCEEEEccCcCc
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------~~~ad~VV~aaG~~s 131 (267)
+..++..+.....+.++++|++|+. ++|+++... .+.+|++|+|||...
T Consensus 49 g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 49 GEADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred CCCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCc
Confidence 4445555544455666788999987 578777542 267999999999864
No 179
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=49.02 E-value=27 Score=31.41 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=37.8
Q ss_pred eeeehHHHHHHHHHHHHhCC-cEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQG-GKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G-~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
..+.-..+...|.+.+++.+ ++++. ++|++++.. .++||.||-|-|.+|.
T Consensus 99 ~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~~~~adlvIgADG~~S~ 161 (374)
T PRK06617 99 YVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANSK 161 (374)
T ss_pred EEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCCEEeeCEEEEeCCCCch
Confidence 45666788899999888875 77775 567665321 3689999999999975
No 180
>PRK09077 L-aspartate oxidase; Provisional
Probab=48.93 E-value=30 Score=33.03 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhC-CcEEEE-EeeCCccc--------c----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSG--------L----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~--------~----------------~~~ad~VV~aaG~~s~ 132 (267)
...+...|.+.++++ |++++. ++|+++.. . .+.|+.||+|||.++.
T Consensus 137 G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 137 GKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 356778888888765 899887 56555421 1 1579999999999875
No 181
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=48.19 E-value=39 Score=30.15 Aligned_cols=74 Identities=14% Similarity=-0.003 Sum_probs=42.5
Q ss_pred hhHhhhCCCcEECChhhhhcCCCCceeEEE-e--eeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc----------
Q psy5261 50 ASIENLVPVYRDAQPDELVVGNKTYKYGSY-S--ETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG---------- 115 (267)
Q Consensus 50 ~~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~--~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---------- 115 (267)
..+++.|.++.++++.+. .+|.. + ..... +...+....+.+.+.|++++. +.|.....
T Consensus 35 ~~l~~~g~~v~lie~~~~-------~gg~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 106 (352)
T PRK12770 35 GYLACLGYEVHVYDKLPE-------PGGLMLFGIPEFRI-PIERVREGVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFV 106 (352)
T ss_pred HHHHHCCCcEEEEeCCCC-------CCceeeecCccccc-CHHHHHHHHHHHHhCCeEEecCcEEeeccccccccccccc
Confidence 345667888888775431 12221 1 11222 334445555667777999886 45532210
Q ss_pred ------c--ccCCCEEEEccCcCc
Q psy5261 116 ------L--ESEFDFVFNCAGLGA 131 (267)
Q Consensus 116 ------~--~~~ad~VV~aaG~~s 131 (267)
. .+++|+||+|+|.+.
T Consensus 107 ~~~~~~~~~~~~~d~lviAtGs~~ 130 (352)
T PRK12770 107 ERIVSLEELVKKYDAVLIATGTWK 130 (352)
T ss_pred cccCCHHHHHhhCCEEEEEeCCCC
Confidence 0 257999999999863
No 182
>PRK06996 hypothetical protein; Provisional
Probab=48.05 E-value=28 Score=31.68 Aligned_cols=46 Identities=9% Similarity=0.025 Sum_probs=35.6
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCc
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGL 129 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~ 129 (267)
.++-..+...|.+.+++.|++++. +++++++.. .++||.||.|-|.
T Consensus 111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 566678889999999999998886 566655321 3679999999995
No 183
>PRK13984 putative oxidoreductase; Provisional
Probab=47.86 E-value=47 Score=32.20 Aligned_cols=75 Identities=13% Similarity=-0.001 Sum_probs=46.2
Q ss_pred hhHhhhCCCcEECChhhhhcCCCCceeEEE-ee-eeeeehHHHHHHHHHHHHhCCcEEEE-EeeC-Cccc--cccCCCEE
Q psy5261 50 ASIENLVPVYRDAQPDELVVGNKTYKYGSY-SE-TLVIENSDFLPWAMKRVSKQGGKFRR-GTVS-SFSG--LESEFDFV 123 (267)
Q Consensus 50 ~~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~~-~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~-~l~~--~~~~ad~V 123 (267)
..+++.|.++.+++.++.. +|.. +. +...-+..++....+.+++.|++++. +.|. ++.. ....+|+|
T Consensus 300 ~~L~~~G~~v~vie~~~~~-------gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~~~yD~v 372 (604)
T PRK13984 300 YFLATMGYEVTVYESLSKP-------GGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDIPLEELREKHDAV 372 (604)
T ss_pred HHHHHCCCeEEEEecCCCC-------CceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCcCCHHHHHhcCCEE
Confidence 3557788888888755411 2211 11 11223456666667788889999987 4552 2211 13579999
Q ss_pred EEccCcCc
Q psy5261 124 FNCAGLGA 131 (267)
Q Consensus 124 V~aaG~~s 131 (267)
|+|+|.+.
T Consensus 373 ilAtGa~~ 380 (604)
T PRK13984 373 FLSTGFTL 380 (604)
T ss_pred EEEcCcCC
Confidence 99999874
No 184
>PRK06116 glutathione reductase; Validated
Probab=47.75 E-value=30 Score=32.06 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=25.3
Q ss_pred HHHHHHhCCcEEEEEeeCCccc-------cccCCCEEEEccCcCc
Q psy5261 94 AMKRVSKQGGKFRRGTVSSFSG-------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 94 L~~~~~~~G~~~~~~~V~~l~~-------~~~~ad~VV~aaG~~s 131 (267)
+.+.+++.|++++..+++.+.. ..+++|.||+|||...
T Consensus 99 ~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p 143 (450)
T PRK06116 99 YRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRP 143 (450)
T ss_pred HHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCC
Confidence 3344566899998754433321 1368999999999753
No 185
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=47.73 E-value=23 Score=32.02 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhC-CcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..+...|.+.+.+. |++++. ++|++++.. .++||.||.|.|.+|.
T Consensus 110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 45566777777654 688886 577776432 2689999999999985
No 186
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=47.65 E-value=32 Score=31.19 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc-c---------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG-L---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~-~---------------~~~ad~VV~aaG~~s~ 132 (267)
..+.+.|.+.+.+.|++++. ++|++++. . .++||.||-|-|..|.
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 45677888888888999987 56665532 1 2578999999999873
No 187
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=47.37 E-value=14 Score=35.24 Aligned_cols=44 Identities=11% Similarity=0.001 Sum_probs=29.1
Q ss_pred HHHHHHHH-hCCcEEEE-EeeCCcccc-------------c----cCCCEEEEccCc-Cchhhc
Q psy5261 92 PWAMKRVS-KQGGKFRR-GTVSSFSGL-------------E----SEFDFVFNCAGL-GAQALC 135 (267)
Q Consensus 92 ~~L~~~~~-~~G~~~~~-~~V~~l~~~-------------~----~~ad~VV~aaG~-~s~~l~ 135 (267)
.+++..++ +.|++|+. ++|++|... . ..++.||+|+|+ +|++|+
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 33444444 45688887 577766421 1 368999999999 777664
No 188
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=47.01 E-value=19 Score=33.24 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=52.2
Q ss_pred CCCcEECChhhhhcC-CCCceeEEEeeeeeeehHHHHHHHHHHHHhCC-cEEEEEeeCCcccc----------ccCCCEE
Q psy5261 56 VPVYRDAQPDELVVG-NKTYKYGSYSETLVIENSDFLPWAMKRVSKQG-GKFRRGTVSSFSGL----------ESEFDFV 123 (267)
Q Consensus 56 g~~~~~l~~~el~~~-P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G-~~~~~~~V~~l~~~----------~~~ad~V 123 (267)
+.++.++|+..-.-+ | -+ .....|.+++.....-+.+.+++.+ ++|...+|++|... .+.+|..
T Consensus 28 ~~~itLVd~~~~hl~~p-lL---~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~L 103 (405)
T COG1252 28 DVEITLVDRRDYHLFTP-LL---YEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYL 103 (405)
T ss_pred CCcEEEEeCCCccccch-hh---hhhhcCCCChhheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEE
Confidence 355566666553333 3 11 1122388888888888888888666 99998899988643 3789999
Q ss_pred EEccCcCchhh
Q psy5261 124 FNCAGLGAQAL 134 (267)
Q Consensus 124 V~aaG~~s~~l 134 (267)
|+|.|......
T Consensus 104 VvalGs~~~~f 114 (405)
T COG1252 104 VVALGSETNYF 114 (405)
T ss_pred EEecCCcCCcC
Confidence 99999977654
No 189
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=46.94 E-value=25 Score=32.70 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|....
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 44667788888999999987 577666421 2579999999998754
No 190
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=46.03 E-value=18 Score=33.31 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=39.7
Q ss_pred CCcEECChhhhhcC-CCCceeEE-Eeeeeeee-hHHHHHHHHH-HHHhCCcEEEE-EeeCCcccc-------------cc
Q psy5261 57 PVYRDAQPDELVVG-NKTYKYGS-YSETLVIE-NSDFLPWAMK-RVSKQGGKFRR-GTVSSFSGL-------------ES 118 (267)
Q Consensus 57 ~~~~~l~~~el~~~-P~~~~~g~-~~~~~~vd-p~~~~~~L~~-~~~~~G~~~~~-~~V~~l~~~-------------~~ 118 (267)
.++.++++++.... | .++ .+..+.+. +..++....+ .+++.|++++. ++|+++... .+
T Consensus 13 ~~Vtlid~~~~~~~~~----~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~ 88 (427)
T TIGR03385 13 SDIIVFEKTEDVSFAN----CGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETY 88 (427)
T ss_pred CcEEEEEcCCceeEEc----CCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEE
Confidence 45677777664433 3 111 11123332 3333333333 34778999875 677776421 13
Q ss_pred C--CCEEEEccCcCc
Q psy5261 119 E--FDFVFNCAGLGA 131 (267)
Q Consensus 119 ~--ad~VV~aaG~~s 131 (267)
+ +|+||+|||...
T Consensus 89 ~~~yd~lIiATG~~p 103 (427)
T TIGR03385 89 EESYDYLILSPGASP 103 (427)
T ss_pred ecCCCEEEECCCCCC
Confidence 5 999999999854
No 191
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=45.89 E-value=26 Score=32.68 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|....
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 45667788888899999998 567666321 2579999999997654
No 192
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=45.54 E-value=36 Score=31.81 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=26.8
Q ss_pred HHHHHHHhCCcEEEEEeeCC----ccc---------c---ccCCCEEEEccCcCch
Q psy5261 93 WAMKRVSKQGGKFRRGTVSS----FSG---------L---ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~~~V~~----l~~---------~---~~~ad~VV~aaG~~s~ 132 (267)
.+.+.+++.|++++..++.. +.. . .+.+|+||+|||....
T Consensus 97 ~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 97 DIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 45566777899998854332 211 0 2679999999998653
No 193
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=45.47 E-value=32 Score=25.98 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=38.2
Q ss_pred eeeeeeehHHHHHHHHHHHHhCCcEEEE-E-eeCCccc----ccc-CCCEEEEccCcCc
Q psy5261 80 SETLVIENSDFLPWAMKRVSKQGGKFRR-G-TVSSFSG----LES-EFDFVFNCAGLGA 131 (267)
Q Consensus 80 ~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~-~V~~l~~----~~~-~ad~VV~aaG~~s 131 (267)
.+.|..+......+|-+.++++|+.+.- + --.+++. .++ .||.||+|+...-
T Consensus 10 CPtGIAHTyMAAeaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD~~i 68 (122)
T COG1445 10 CPTGIAHTYMAAEALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAADIEV 68 (122)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEecccc
Confidence 3458888899999999999999988863 2 3333332 133 7999999998653
No 194
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=44.99 E-value=27 Score=32.78 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCC-cc--ccccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSS-FS--GLESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~-l~--~~~~~ad~VV~aaG~~s~ 132 (267)
+..++....+.+++.|++++. ++|.. +. .....+|+||+|+|.+..
T Consensus 190 ~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 190 DKAVLSRRREIFTAMGIEFHLNCEVGRDISLDDLLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CHHHHHHHHHHHHHCCCEEECCCEeCCccCHHHHHhcCCEEEEEeCCCCC
Confidence 456667777888899999986 45632 21 112479999999999864
No 195
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.98 E-value=35 Score=31.72 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=25.6
Q ss_pred HHHHHHhCCcEEEEEeeCCccc-----------cccCCCEEEEccCcCc
Q psy5261 94 AMKRVSKQGGKFRRGTVSSFSG-----------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 94 L~~~~~~~G~~~~~~~V~~l~~-----------~~~~ad~VV~aaG~~s 131 (267)
+...+++.|++++..+++.+.. ..+++|+||+|+|...
T Consensus 98 ~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 98 VEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred HHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 4455677899998744322211 1367999999999865
No 196
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=44.75 E-value=31 Score=31.36 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhC-CcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..+...|.+.+.+. |++++. ++|++++.. .++||.||-|-|.+|.
T Consensus 111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 111 RVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 44566788877764 788877 577776431 2689999999999874
No 197
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=44.49 E-value=37 Score=35.20 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=47.0
Q ss_pred hhHhhhCCCcEECChhhhhcCCCCceeEEE-e-eeeeeehHHHHHHHHHHHHhCCcEEEE-Eee-CCcccc-ccCCCEEE
Q psy5261 50 ASIENLVPVYRDAQPDELVVGNKTYKYGSY-S-ETLVIENSDFLPWAMKRVSKQGGKFRR-GTV-SSFSGL-ESEFDFVF 124 (267)
Q Consensus 50 ~~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~-~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V-~~l~~~-~~~ad~VV 124 (267)
..++..|.++.++++.+. + +|.. + -+..-.|...+....+.+++.|++|+. +.| ..++.. ...+|+||
T Consensus 556 ~~Lar~G~~VtV~Ek~~~---~----GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vdi~le~L~~~gYDaVI 628 (1019)
T PRK09853 556 YFLARAGHPVTVFEREEN---A----GGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTVEQLKNEGYDYVV 628 (1019)
T ss_pred HHHHHcCCeEEEEecccc---c----CcceeeecccccccHHHHHHHHHHHHHcCCEEEeCceeEEEhhhheeccCCEEE
Confidence 345677888877765431 1 2211 1 122223566777777888889999987 455 122222 24699999
Q ss_pred EccCcCch
Q psy5261 125 NCAGLGAQ 132 (267)
Q Consensus 125 ~aaG~~s~ 132 (267)
+|+|++..
T Consensus 629 LATGA~~~ 636 (1019)
T PRK09853 629 VAIGADKN 636 (1019)
T ss_pred ECcCCCCC
Confidence 99999854
No 198
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=44.21 E-value=38 Score=33.87 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=44.8
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEE-Eee-eeeeehHHHHHHHHHHHHhCCcEEEE-EeeCC-c--ccc-ccCCCEE
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGS-YSE-TLVIENSDFLPWAMKRVSKQGGKFRR-GTVSS-F--SGL-ESEFDFV 123 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~-~~~-~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~-l--~~~-~~~ad~V 123 (267)
.+++.|.++.++++.. .+ +|. .+. +..--|..++....+.+++.|++|+. +.|.. + +.. ...+|+|
T Consensus 449 ~l~~~G~~V~v~e~~~---~~----GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~l~~~~ydav 521 (752)
T PRK12778 449 DLAKRGYDVTVFEALH---EI----GGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEEGFKGI 521 (752)
T ss_pred HHHHCCCeEEEEecCC---CC----CCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCcCCHHHHhhcCCCEE
Confidence 4566788888777532 11 221 111 11112456677777788889999987 34421 1 111 2469999
Q ss_pred EEccCcCch
Q psy5261 124 FNCAGLGAQ 132 (267)
Q Consensus 124 V~aaG~~s~ 132 (267)
|+|+|++.+
T Consensus 522 vlAtGa~~~ 530 (752)
T PRK12778 522 FIASGAGLP 530 (752)
T ss_pred EEeCCCCCC
Confidence 999999743
No 199
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=44.08 E-value=30 Score=32.04 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc--------ccCCCEEEEccCcCch
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------~~~ad~VV~aaG~~s~ 132 (267)
.+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.-..
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcC
Confidence 4566778888899999987 567666421 2579999999998653
No 200
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=43.84 E-value=26 Score=24.61 Aligned_cols=49 Identities=14% Similarity=-0.048 Sum_probs=35.2
Q ss_pred eeeeehHHHHHHHHHHHHhCCcEEEE--EeeCCcccc----c-cCCCEEEEccCcC
Q psy5261 82 TLVIENSDFLPWAMKRVSKQGGKFRR--GTVSSFSGL----E-SEFDFVFNCAGLG 130 (267)
Q Consensus 82 ~~~vdp~~~~~~L~~~~~~~G~~~~~--~~V~~l~~~----~-~~ad~VV~aaG~~ 130 (267)
.|..+......+|.+.++++|.++.- +....++.. . -.||.||+++..-
T Consensus 8 ~G~Aht~lAae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 8 TGIAHTFMAAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADRE 63 (85)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccCC
Confidence 37777788889999999999988762 333343321 2 3799999998764
No 201
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=43.64 E-value=23 Score=33.82 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhC-CcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~ 132 (267)
..+-..|.+.+.+. |++++. ++|++++.. .++||.||-|.|..|.
T Consensus 113 ~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 113 PLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 34556777777765 899987 578776431 2578999999999974
No 202
>KOG1336|consensus
Probab=43.38 E-value=40 Score=31.60 Aligned_cols=41 Identities=27% Similarity=0.244 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCcEEEE-EeeCCcccc--------------ccCCCEEEEccCcCc
Q psy5261 91 LPWAMKRVSKQGGKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 91 ~~~L~~~~~~~G~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s 131 (267)
-+.+...++++|++|+. +.+.+++.. .+.||.||++.|+-.
T Consensus 258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 35566777889999998 577777643 268999999999853
No 203
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=42.99 E-value=32 Score=31.92 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|.-..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 44556677788889999997 566666421 2679999999997644
No 204
>PLN02661 Putative thiazole synthesis
Probab=42.95 E-value=43 Score=30.37 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=20.9
Q ss_pred ehHHHHHHHHHHHHh-CCcEEEE-EeeCCcc
Q psy5261 86 ENSDFLPWAMKRVSK-QGGKFRR-GTVSSFS 114 (267)
Q Consensus 86 dp~~~~~~L~~~~~~-~G~~~~~-~~V~~l~ 114 (267)
+...++..|.+++.+ .|++++. ..|.++.
T Consensus 170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI 200 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLI 200 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEEEeCeEeeeEE
Confidence 556777888887755 6899987 5766653
No 205
>PLN02815 L-aspartate oxidase
Probab=42.81 E-value=35 Score=33.16 Aligned_cols=47 Identities=6% Similarity=-0.038 Sum_probs=33.5
Q ss_pred ehHHHHHHHHHHHHhC-CcEEEE-EeeCCccc--------c--------------ccCCCEEEEccCcCch
Q psy5261 86 ENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSG--------L--------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~--------~--------------~~~ad~VV~aaG~~s~ 132 (267)
....++..|.+.+++. |++++. +.+++|.. . .+.|+.||+|||.+..
T Consensus 153 tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 153 TGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 3466888998888765 899876 56555421 0 1468999999998764
No 206
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=41.64 E-value=26 Score=33.18 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=37.6
Q ss_pred ChhhhhcC-CCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc------------------ccCCCEE
Q psy5261 63 QPDELVVG-NKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL------------------ESEFDFV 123 (267)
Q Consensus 63 ~~~el~~~-P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~------------------~~~ad~V 123 (267)
.+..++++ | +..--++|-+-..-...|=..+.+.-++.|++|.+.++..+.+. ++.+|.|
T Consensus 390 qA~~Ike~~P-d~~v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLV 468 (622)
T COG1148 390 QAQLIKERYP-DTDVTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLV 468 (622)
T ss_pred hhhhhhhcCC-CcceeEEEEEeeccCccHHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccceE
Confidence 34455556 6 33233344332222223334444433477999988766555432 2689999
Q ss_pred EEccCcC
Q psy5261 124 FNCAGLG 130 (267)
Q Consensus 124 V~aaG~~ 130 (267)
|+++|.-
T Consensus 469 VLa~Gme 475 (622)
T COG1148 469 VLATGME 475 (622)
T ss_pred EEeeccc
Confidence 9999975
No 207
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.64 E-value=39 Score=32.79 Aligned_cols=47 Identities=11% Similarity=-0.153 Sum_probs=32.3
Q ss_pred ehHHHHHHHHHHHHhCC----cEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCch
Q psy5261 86 ENSDFLPWAMKRVSKQG----GKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G----~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~ 132 (267)
....++..|.+.+++++ ++++. +.++++.. . .+.|+.||+|||.++.
T Consensus 131 tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 131 TGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred cHHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 45678888888877654 66665 45554431 1 1479999999999875
No 208
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=41.33 E-value=38 Score=31.09 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------ccCCCEEEEccCcCch-hhcC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------ESEFDFVFNCAGLGAQ-ALCR 136 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------~~~ad~VV~aaG~~s~-~l~~ 136 (267)
..+...+.+.++++|++++. .+|.++... .+.+|.||+|+|.... .++.
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAK 239 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHH
Confidence 34566677888899999987 566665321 2679999999998754 3444
No 209
>PRK06116 glutathione reductase; Validated
Probab=40.78 E-value=28 Score=32.25 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|.-..
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 34566778888999999987 567666421 2579999999997543
No 210
>PRK07308 flavodoxin; Validated
Probab=40.65 E-value=75 Score=24.32 Aligned_cols=54 Identities=4% Similarity=0.040 Sum_probs=37.6
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCc
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGA 131 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s 131 (267)
+.|.+-+.|..+++..+++.+++.|+.+.-..+....... ..+|.||+++..+.
T Consensus 6 IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g 60 (146)
T PRK07308 6 IVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYG 60 (146)
T ss_pred EEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccC
Confidence 4566688899999999999999888755333333322112 36899999887764
No 211
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.51 E-value=46 Score=31.16 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=23.3
Q ss_pred HHHHhCCcEEEEEeeC--C-----ccc-----cccCCCEEEEccCcCc
Q psy5261 96 KRVSKQGGKFRRGTVS--S-----FSG-----LESEFDFVFNCAGLGA 131 (267)
Q Consensus 96 ~~~~~~G~~~~~~~V~--~-----l~~-----~~~~ad~VV~aaG~~s 131 (267)
..+++.|++++..++. + +.. ..+++|+||+|||...
T Consensus 101 ~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 101 GMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred HHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 3456679999874322 1 111 1267999999999854
No 212
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=40.04 E-value=1.2e+02 Score=21.80 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHH-hhCCCCCCCCceeeeccccCCCCCeEE-----EeCCCchhhhccHHHHHHHHHHHH
Q psy5261 189 DISRHDTASILERCY-SLLPRLEEAPVLYEWCGLRPHRSLVIH-----NYGHGGYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 189 ~~~~~~~~~l~~~~~-~~~P~l~~~~~~~~w~G~rp~~pdl~~-----~~G~gg~G~t~a~~~a~~la~li~ 254 (267)
..+.+..+++...+. ++.|.|..-.=.-...++-+....+++ +.|++++.+|+-.++-+.+.+.+-
T Consensus 5 ~~~~~~~e~v~~~l~~~irP~l~~dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ 76 (93)
T COG0694 5 ETDAELLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIP 76 (93)
T ss_pred cccHHHHHHHHHHHHhccCcceeccCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCC
Confidence 345556666666666 778887543212223344444444666 456666777777777766666554
No 213
>PRK12831 putative oxidoreductase; Provisional
Probab=39.67 E-value=60 Score=30.43 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=43.2
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEEE-e--eeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCC-c--ccc--ccCCC
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGSY-S--ETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSS-F--SGL--ESEFD 121 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~--~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~-l--~~~--~~~ad 121 (267)
.+++.|.++.+++..+. | +|.. + +...+....++....+.+++.|++|+. +.|.. + +.. .+.+|
T Consensus 158 ~l~~~G~~V~v~e~~~~---~----GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~~v~~~~~~~~~~~d 230 (464)
T PRK12831 158 DLAKMGYDVTIFEALHE---P----GGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGKTVTIDELLEEEGFD 230 (464)
T ss_pred HHHhCCCeEEEEecCCC---C----CCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECCcCCHHHHHhccCCC
Confidence 45667888877764321 1 2211 1 111222223666667788889999987 44421 2 111 24699
Q ss_pred EEEEccCcCc
Q psy5261 122 FVFNCAGLGA 131 (267)
Q Consensus 122 ~VV~aaG~~s 131 (267)
+||+|+|++.
T Consensus 231 ~viiAtGa~~ 240 (464)
T PRK12831 231 AVFIGSGAGL 240 (464)
T ss_pred EEEEeCCCCC
Confidence 9999999963
No 214
>KOG1298|consensus
Probab=39.56 E-value=3e+02 Score=25.57 Aligned_cols=170 Identities=17% Similarity=0.137 Sum_probs=85.3
Q ss_pred eehHHHHHHHHHHHHh-CCcEEEEEeeCCcccc-----------------ccCCCEEEEccCcCch---hhcCCCCceee
Q psy5261 85 IENSDFLPWAMKRVSK-QGGKFRRGTVSSFSGL-----------------ESEFDFVFNCAGLGAQ---ALCRDRKLTPI 143 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~-~G~~~~~~~V~~l~~~-----------------~~~ad~VV~aaG~~s~---~l~~~~~l~p~ 143 (267)
..-.+|++.|.+.+.. -.|++.+..|.++.+. +..|-.-|+|-|..|+ .|.+ .++.-+
T Consensus 144 FhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~-~~v~~V 222 (509)
T KOG1298|consen 144 FHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCD-PKVEEV 222 (509)
T ss_pred eeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcC-Cccccc
Confidence 3446899999987765 4899998888887442 1358889999999985 3443 222212
Q ss_pred cceEE--EEEC-----CCcceEEE-eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCC-CC----
Q psy5261 144 RGQVI--KVWA-----PWLSHFYY-LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPR-LE---- 210 (267)
Q Consensus 144 rg~~~--~~~~-----p~~~~~v~-~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~-l~---- 210 (267)
-.+.+ .+++ |...|.|. +.....++|-....+++.--..........+-|-...+.+.+.-.+|. |.
T Consensus 223 ~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~ 302 (509)
T KOG1298|consen 223 PSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFL 302 (509)
T ss_pred chheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHH
Confidence 22322 2222 22335555 333444444332234433221111222223334445555555544442 11
Q ss_pred ----CCCceeeeccccCCCCC-----eEEEeC------CCchhhhccHHHHHHHHHHHHh
Q psy5261 211 ----EAPVLYEWCGLRPHRSL-----VIHNYG------HGGYGVTTAPGTSRYAVQLVKQ 255 (267)
Q Consensus 211 ----~~~~~~~w~G~rp~~pd-----l~~~~G------~gg~G~t~a~~~a~~la~li~~ 255 (267)
+-.+...=+-..|.++. +.+.-. .-|.|+|.+..=..++.+++..
T Consensus 303 ~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 303 EAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred HHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcc
Confidence 11111112222333332 222111 2367999888777777777754
No 215
>PLN02507 glutathione reductase
Probab=39.53 E-value=47 Score=31.44 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=23.8
Q ss_pred HHHHhCCcEEEEEeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 96 KRVSKQGGKFRRGTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 96 ~~~~~~G~~~~~~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
..+.+.|++++..++..+... .+++|++|+|||...
T Consensus 132 ~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 132 RLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred HHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCC
Confidence 445567999987544332211 257899999999754
No 216
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=39.47 E-value=35 Score=31.49 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
.+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|....
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 4555666778889999987 567666421 2579999999998643
No 217
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=39.27 E-value=50 Score=30.95 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=44.5
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEEE-ee-eeeeehHHHHHHHHHHHHhCCcEEEE-EeeC-Cccc--cccCCCEEE
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGSY-SE-TLVIENSDFLPWAMKRVSKQGGKFRR-GTVS-SFSG--LESEFDFVF 124 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~~-~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~-~l~~--~~~~ad~VV 124 (267)
.+++.|.++.++++... .+|.. +. +....+..++....+.+++.|++++. +.|. .+.. ....+|+||
T Consensus 161 ~l~~~G~~V~vie~~~~-------~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~d~vv 233 (471)
T PRK12810 161 QLARAGHKVTVFERADR-------IGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAEELLAEYDAVF 233 (471)
T ss_pred HHHhCCCcEEEEecCCC-------CCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCHHHHHhhCCEEE
Confidence 44666777777765421 12211 11 11223455667777788889999987 4442 1211 124799999
Q ss_pred EccCcCch
Q psy5261 125 NCAGLGAQ 132 (267)
Q Consensus 125 ~aaG~~s~ 132 (267)
+|+|.+..
T Consensus 234 lAtGa~~~ 241 (471)
T PRK12810 234 LGTGAYKP 241 (471)
T ss_pred EecCCCCC
Confidence 99999843
No 218
>KOG1346|consensus
Probab=38.88 E-value=26 Score=32.51 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=39.9
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch-hhc
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ-ALC 135 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~-~l~ 135 (267)
+-+-|.-+.++-.+..++.||.++. ..|.++... .++.|.||+|.|.--+ +|.
T Consensus 388 ~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela 454 (659)
T KOG1346|consen 388 EKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELA 454 (659)
T ss_pred hhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhc
Confidence 5566777778888888999999987 577776432 3689999999998744 344
No 219
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=38.60 E-value=34 Score=31.69 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------------ccCCCEEEEccCcC
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------------ESEFDFVFNCAGLG 130 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------------~~~ad~VV~aaG~~ 130 (267)
+..++..|.+.++++|++|+. ++|++|+.. .+.||.||.|+...
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 467889999999899999987 577777410 14589999999875
No 220
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=38.05 E-value=53 Score=30.47 Aligned_cols=39 Identities=8% Similarity=-0.022 Sum_probs=25.3
Q ss_pred HHHHHHHhCCcEEEEEeeCCccc------------cccCCCEEEEccCcCc
Q psy5261 93 WAMKRVSKQGGKFRRGTVSSFSG------------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~~~V~~l~~------------~~~~ad~VV~aaG~~s 131 (267)
.+.+.+++.|++++..++..+.. ..+++|+||+|||...
T Consensus 99 ~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 99 VRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRP 149 (461)
T ss_pred HHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 34456677899988744322211 0368999999999653
No 221
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=38.00 E-value=23 Score=32.41 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=32.5
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
.++-..+...|.+.+.. ..++. ++|++++.. .++||.||.|.|.+|.
T Consensus 101 ~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 101 SVHRADFLDALLKHLPE--GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred cCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 46667788888877643 33444 566666431 2579999999999985
No 222
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=37.87 E-value=54 Score=30.62 Aligned_cols=37 Identities=8% Similarity=-0.113 Sum_probs=24.4
Q ss_pred HHHHHhCCcEEEEEeeCCccc-------------------cccCCCEEEEccCcCc
Q psy5261 95 MKRVSKQGGKFRRGTVSSFSG-------------------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 95 ~~~~~~~G~~~~~~~V~~l~~-------------------~~~~ad~VV~aaG~~s 131 (267)
.+.+++.|++++..+++.+.. ..+++|++|+|||...
T Consensus 99 ~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 99 AALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCC
Confidence 344567799998854332211 1257999999999865
No 223
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=37.72 E-value=48 Score=25.39 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=38.0
Q ss_pred EeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccccCCCEEEEccCcCchhhcC
Q psy5261 79 YSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLESEFDFVFNCAGLGAQALCR 136 (267)
Q Consensus 79 ~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~~~ad~VV~aaG~~s~~l~~ 136 (267)
.|.+...+...+...+++.+...|-.+--.++..-...-..+|.||++++.+...+.+
T Consensus 3 vY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~~~~~yD~vi~gspiy~g~~~~ 60 (143)
T PF12724_consen 3 VYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEEDEPDLSDYDAVIFGSPIYAGRIPG 60 (143)
T ss_pred EEECCCchHHHHHHHHHHHHhhhccEEEHHhhhhcccccccCCEEEEEEEEECCcCCH
Confidence 4556677899999999998876643332123210011124799999999999877654
No 224
>PRK06703 flavodoxin; Provisional
Probab=37.70 E-value=69 Score=24.64 Aligned_cols=53 Identities=6% Similarity=-0.080 Sum_probs=37.7
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcC
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLG 130 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~ 130 (267)
+.|.+.+.|...+...+++.+...|+++.-..+.+..... ..+|.||+++-.|
T Consensus 6 IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~ 59 (151)
T PRK06703 6 IAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTW 59 (151)
T ss_pred EEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCC
Confidence 4566688999999999999999888776533333322112 3789999988655
No 225
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=37.64 E-value=40 Score=31.35 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|....
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 35667777888899999987 566665421 2579999999998754
No 226
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=37.63 E-value=43 Score=32.72 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc-----c----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG-----L----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~-----~----------------~~~ad~VV~aaG~~s~ 132 (267)
...+.+.+...+++.++++++ +.|+++.. . .+.|+.||+|||.|+.
T Consensus 125 G~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 125 GESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred chhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 344555566666666778776 45555431 1 1579999999999874
No 227
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=36.98 E-value=52 Score=30.63 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=25.5
Q ss_pred HHHHHHHhCCcEEEEEee--CC---c--cccccCCCEEEEccCcCc
Q psy5261 93 WAMKRVSKQGGKFRRGTV--SS---F--SGLESEFDFVFNCAGLGA 131 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~~~V--~~---l--~~~~~~ad~VV~aaG~~s 131 (267)
.+...+++.|++++..+. .+ + ....+++|+||+|||...
T Consensus 96 ~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p 141 (450)
T TIGR01421 96 IYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKP 141 (450)
T ss_pred HHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCC
Confidence 455667778999987322 22 1 011368999999999753
No 228
>PRK06370 mercuric reductase; Validated
Probab=36.54 E-value=42 Score=31.22 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|.-..
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 34566777888899999987 466655321 2579999999997643
No 229
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=36.34 E-value=32 Score=31.34 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=25.4
Q ss_pred HHhCCcEEEE-EeeCCcccc----------ccCCCEEEEccCcCch
Q psy5261 98 VSKQGGKFRR-GTVSSFSGL----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 98 ~~~~G~~~~~-~~V~~l~~~----------~~~ad~VV~aaG~~s~ 132 (267)
.++.|++++. ++|..+... .+.+|++|+|||....
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 4567999887 467665331 2689999999998764
No 230
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=36.08 E-value=30 Score=31.93 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=43.0
Q ss_pred HhhhC--CCcEECChhhhhcC-CCCceeEEEeeeee-eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------
Q psy5261 52 IENLV--PVYRDAQPDELVVG-NKTYKYGSYSETLV-IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------- 116 (267)
Q Consensus 52 ~~~~g--~~~~~l~~~el~~~-P~~~~~g~~~~~~~-vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------- 116 (267)
+++.+ .++.++++++.... |.... .+..+. -++..++....+.+++.|++++. ++|+++...
T Consensus 19 l~~~~~~~~Vtli~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~ 95 (444)
T PRK09564 19 AKRLNKELEITVYEKTDIVSFGACGLP---YFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLK 95 (444)
T ss_pred HHHHCCCCcEEEEECCCcceeecCCCc---eEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECC
Confidence 34444 36777777654433 20110 111222 22334444455667778999876 577765321
Q ss_pred ---ccC--CCEEEEccCcCc
Q psy5261 117 ---ESE--FDFVFNCAGLGA 131 (267)
Q Consensus 117 ---~~~--ad~VV~aaG~~s 131 (267)
.++ +|++|+|+|...
T Consensus 96 ~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 96 TGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred CCCEEEecCCEEEECCCCCC
Confidence 133 999999999864
No 231
>PRK13748 putative mercuric reductase; Provisional
Probab=35.57 E-value=45 Score=31.87 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCchh
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~~ 133 (267)
..+...+.+.+++.|++++. ++|++++.. .+.+|.||+|+|...+.
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCC
Confidence 34567778888899999987 566665321 36899999999987543
No 232
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=35.50 E-value=47 Score=30.82 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|....
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 34566777888899999987 567655311 2579999999998654
No 233
>PRK06756 flavodoxin; Provisional
Probab=35.37 E-value=1.1e+02 Score=23.31 Aligned_cols=54 Identities=4% Similarity=-0.085 Sum_probs=38.6
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccc-cc-cCCCEEEEccCcCc
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSG-LE-SEFDFVFNCAGLGA 131 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~-~~-~~ad~VV~aaG~~s 131 (267)
+.|.+.+.|...+..++++.+++.|+.+.-..+.+... .. ..+|.||+++-.|.
T Consensus 6 IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~ 61 (148)
T PRK06756 6 MIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWG 61 (148)
T ss_pred EEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCC
Confidence 45556889999999999999999998765433333211 11 37899999997764
No 234
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=35.22 E-value=83 Score=25.45 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCC-----CCCceeeeccccCCCCCeEEEeCCCchhhhccHHH
Q psy5261 186 YSRDISRHDTASILERCYSLLPRLE-----EAPVLYEWCGLRPHRSLVIHNYGHGGYGVTTAPGT 245 (267)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~P~l~-----~~~~~~~w~G~rp~~pdl~~~~G~gg~G~t~a~~~ 245 (267)
|.++...++..+|.+...+-++... .++--++|+|-||-. =+.|+-++|+....|+
T Consensus 11 WEneL~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPEl----RaIgyD~~GvaAH~G~ 71 (196)
T PF02474_consen 11 WENELQLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPEL----RAIGYDSRGVAAHMGL 71 (196)
T ss_pred eccccchhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCcee----EEEeecCchHHHHHHH
Confidence 5566777778888888888776432 234468999999973 3334444454444433
No 235
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=34.94 E-value=79 Score=31.04 Aligned_cols=76 Identities=16% Similarity=0.045 Sum_probs=45.8
Q ss_pred hhHhhhCCCcEECChhhhhcCCCCceeEE-Eee-eeeeehHHHHHHHHHHHHhCCcEEEE-EeeC-Ccc--ccccCCCEE
Q psy5261 50 ASIENLVPVYRDAQPDELVVGNKTYKYGS-YSE-TLVIENSDFLPWAMKRVSKQGGKFRR-GTVS-SFS--GLESEFDFV 123 (267)
Q Consensus 50 ~~~~~~g~~~~~l~~~el~~~P~~~~~g~-~~~-~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~-~l~--~~~~~ad~V 123 (267)
..++..|.++.++++.+ ..+|. .+. +..--+..++....+.+++.|++|+. +.|. ++. .....+|+|
T Consensus 344 ~~L~~~G~~V~V~E~~~-------~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~~~~~~~Dav 416 (654)
T PRK12769 344 DVLARNGVAVTVYDRHP-------EIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLESLLEDYDAV 416 (654)
T ss_pred HHHHHCCCeEEEEecCC-------CCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHHHHHhcCCEE
Confidence 35577788888777542 11222 111 12222455666667778889999987 4552 222 112479999
Q ss_pred EEccCcCch
Q psy5261 124 FNCAGLGAQ 132 (267)
Q Consensus 124 V~aaG~~s~ 132 (267)
|+|+|.+..
T Consensus 417 ilAtGa~~~ 425 (654)
T PRK12769 417 FVGVGTYRS 425 (654)
T ss_pred EEeCCCCCC
Confidence 999999754
No 236
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=34.43 E-value=49 Score=30.90 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc---c-------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG---L-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|++++. . .+.+|.||+|+|.-..
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 34566777888899999987 56666541 1 2578999999998643
No 237
>PLN02507 glutathione reductase
Probab=34.38 E-value=48 Score=31.37 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.|++|+|.-..
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence 34566777788899999997 577766421 2679999999997654
No 238
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=34.19 E-value=49 Score=31.19 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=42.5
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEE-Ee--eeeeeehHHHHHHHHHHHHhCCcEEEE-EeeC-Ccccc--ccCCCEE
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGS-YS--ETLVIENSDFLPWAMKRVSKQGGKFRR-GTVS-SFSGL--ESEFDFV 123 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~-~~--~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~-~l~~~--~~~ad~V 123 (267)
.+++.|.++.++++.+- + +|. .+ +...+ +..++....+.+++.|++++. +.|. .+... ...+|+|
T Consensus 161 ~L~~~g~~V~v~e~~~~---~----gG~l~~gip~~~~-~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~~~~~~d~V 232 (485)
T TIGR01317 161 QLNRAGHTVTVFEREDR---C----GGLLMYGIPNMKL-DKAIVDRRIDLLSAEGIDFVTNTEIGVDISADELKEQFDAV 232 (485)
T ss_pred HHHHcCCeEEEEecCCC---C----CceeeccCCCccC-CHHHHHHHHHHHHhCCCEEECCCEeCCccCHHHHHhhCCEE
Confidence 44566777777665431 1 121 11 11222 234555566778889999987 4553 22111 2479999
Q ss_pred EEccCcCc
Q psy5261 124 FNCAGLGA 131 (267)
Q Consensus 124 V~aaG~~s 131 (267)
|+|+|.+.
T Consensus 233 ilAtGa~~ 240 (485)
T TIGR01317 233 VLAGGATK 240 (485)
T ss_pred EEccCCCC
Confidence 99999984
No 239
>PRK06475 salicylate hydroxylase; Provisional
Probab=34.17 E-value=68 Score=29.09 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=36.1
Q ss_pred eeehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
.++-..+...|.+.+.+. |++++. ++|++++.. .++||.||-|-|.+|.
T Consensus 103 ~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 103 VCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred eECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 355567888898888764 788887 577666321 2578999999999974
No 240
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=33.46 E-value=72 Score=29.39 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=23.5
Q ss_pred HHHHhCCcEEEEEeeCC-------ccc----cccCCCEEEEccCcCc
Q psy5261 96 KRVSKQGGKFRRGTVSS-------FSG----LESEFDFVFNCAGLGA 131 (267)
Q Consensus 96 ~~~~~~G~~~~~~~V~~-------l~~----~~~~ad~VV~aaG~~s 131 (267)
+.+.+.|++++..++.. +.. ..+++|+||+|||...
T Consensus 84 ~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~ 130 (438)
T PRK07251 84 AMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVS 130 (438)
T ss_pred HHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCC
Confidence 44567799988743211 111 1368999999999864
No 241
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=33.18 E-value=32 Score=32.96 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=40.8
Q ss_pred eeehHHHHHHHHHHHHhCCc--EEEE-EeeCCcccc--------------------ccCCCEEEEccCcCchhhcCC--C
Q psy5261 84 VIENSDFLPWAMKRVSKQGG--KFRR-GTVSSFSGL--------------------ESEFDFVFNCAGLGAQALCRD--R 138 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~--~~~~-~~V~~l~~~--------------------~~~ad~VV~aaG~~s~~l~~~--~ 138 (267)
...-..+..+|.+++++.|. .|++ ++|++++.. ...+|+||+|+|..+..-.+. .
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 45567788888888888775 3444 566665421 024799999999987543331 2
Q ss_pred C-ceeecceEEEEE
Q psy5261 139 K-LTPIRGQVIKVW 151 (267)
Q Consensus 139 ~-l~p~rg~~~~~~ 151 (267)
| +.--+|.++...
T Consensus 160 ~G~e~F~G~i~HS~ 173 (531)
T PF00743_consen 160 PGLEKFKGEIIHSK 173 (531)
T ss_dssp CTGGGHCSEEEEGG
T ss_pred hhhhcCCeeEEccc
Confidence 1 233467766554
No 242
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=32.88 E-value=30 Score=35.18 Aligned_cols=44 Identities=11% Similarity=-0.014 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------ccCCCEEEEccCcCc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------~~~ad~VV~aaG~~s 131 (267)
..+.....+.++++|++++. ++|+++... .+.+|++|+|||...
T Consensus 59 ~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 59 EELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCc
Confidence 33333345566778999987 567766432 267999999999864
No 243
>PF04033 DUF365: Domain of unknown function (DUF365); InterPro: IPR007176 This is an archaeal family of unknown function.; PDB: 2KKU_A.
Probab=32.82 E-value=59 Score=23.12 Aligned_cols=43 Identities=16% Similarity=0.021 Sum_probs=28.2
Q ss_pred hccCCCCceE---EEEEeeEeccCCchhHhhhCCCcEECChhhhhcC
Q psy5261 27 KFSADGSTGK---AMISTYQTSLLKNASIENLVPVYRDAQPDELVVG 70 (267)
Q Consensus 27 ~~~~~~~~g~---~~~~g~~~~~~~~~~~~~~g~~~~~l~~~el~~~ 70 (267)
+++-.+++|+ ..+..+.+|.|+...++.+|-.. .||++|+++.
T Consensus 5 FYaSrEdqGf~GEAeie~V~~~~n~~ei~ekygd~l-FLT~eE~r~Y 50 (97)
T PF04033_consen 5 FYASREDQGFVGEAEIESVEHFKNPEEIIEKYGDRL-FLTKEELRKY 50 (97)
T ss_dssp E---STT-B--EEEEEEEEEEES-THHHHHHTSTTB-SS-HHHHHHH
T ss_pred EEEecccccceeeEEEEEEEeeCCHHHHHHHhCcce-ecCHHHHHHH
Confidence 3455566776 35777888888888888888877 7999999864
No 244
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=31.91 E-value=52 Score=31.08 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.-.+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 45667788888999999987 466665411 2579999999997644
No 245
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=31.74 E-value=79 Score=29.41 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=23.0
Q ss_pred HHHhCCcEEEEEeeCCccc---------c--ccCCCEEEEccCcCc
Q psy5261 97 RVSKQGGKFRRGTVSSFSG---------L--ESEFDFVFNCAGLGA 131 (267)
Q Consensus 97 ~~~~~G~~~~~~~V~~l~~---------~--~~~ad~VV~aaG~~s 131 (267)
.+++.|++++..++..+.. . .+++|+||+|||...
T Consensus 99 ~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p 144 (458)
T PRK06912 99 LMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEP 144 (458)
T ss_pred HHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCC
Confidence 3456799987744332211 0 267999999999864
No 246
>PRK07538 hypothetical protein; Provisional
Probab=31.49 E-value=59 Score=29.66 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=36.2
Q ss_pred eeeehHHHHHHHHHHHHh-CCc-EEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSK-QGG-KFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~-~G~-~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
..++-..+...|.+.+.+ .|. .++. ++|++++.. .++||.||-|-|.+|.
T Consensus 97 ~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 97 YSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred EEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 457777888889888765 474 5766 577666421 2579999999999984
No 247
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=31.40 E-value=1.2e+02 Score=22.93 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=37.6
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEE-EEeeCCcccc---ccCCCEEEEccCcCc
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFR-RGTVSSFSGL---ESEFDFVFNCAGLGA 131 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~-~~~V~~l~~~---~~~ad~VV~aaG~~s 131 (267)
+.|.+.+.|..++...+++.+...|+++. ...+..+... -..+|.||+++..|.
T Consensus 5 IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~ 62 (140)
T TIGR01754 5 LAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWE 62 (140)
T ss_pred EEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeC
Confidence 45666788999999999999988887764 2233322111 136899999998763
No 248
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=31.35 E-value=1.4e+02 Score=27.93 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcC
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLG 130 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~ 130 (267)
...+..+|++.++++|++|+. ++|++|... .+.||+||.++...
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 456888999999999999987 688887421 13589999888875
No 249
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=31.35 E-value=1e+02 Score=28.73 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=33.1
Q ss_pred eeehHHHHHHHHHHHHhC-CcEEEEEeeCCccccccCCCEEEEccCcCc
Q psy5261 84 VIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGLESEFDFVFNCAGLGA 131 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~~~~ad~VV~aaG~~s 131 (267)
++|-..|-.++.+++++. ++.+.+.+|.++. ..|.||+|||.-+
T Consensus 93 ~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~----~~d~VViATG~~~ 137 (433)
T TIGR00137 93 AVDRGIFSRSLTEQVASHPNVTLIREEVTEIP----EEGITVIATGPLT 137 (433)
T ss_pred EehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc----cCCeEEEeCCCCc
Confidence 567778888888888765 5677766777664 4689999999643
No 250
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.85 E-value=62 Score=21.80 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL 116 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~ 116 (267)
+..+...+.+.++++|+++++ +.+.+++..
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 69 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKD 69 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe
Confidence 355667778889999999999 688888654
No 251
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.71 E-value=1.1e+02 Score=21.64 Aligned_cols=56 Identities=14% Similarity=0.008 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCcEEEEE-eeCCccc-------cccCCCEEEEccCcCchhhcC---------CCCceeec
Q psy5261 89 DFLPWAMKRVSKQGGKFRRG-TVSSFSG-------LESEFDFVFNCAGLGAQALCR---------DRKLTPIR 144 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~~-~V~~l~~-------~~~~ad~VV~aaG~~s~~l~~---------~~~l~p~r 144 (267)
.....+.+.+++.|+++... +-...+. .-..||.||+.++.-+-.... +.|+...+
T Consensus 10 ~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 44567788888999988764 2122211 114799999999987654431 57776665
No 252
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=30.19 E-value=60 Score=30.21 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
.+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.-..
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcC
Confidence 3556677788889999987 466655321 2579999999997543
No 253
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.02 E-value=71 Score=29.78 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.-..
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 34567788888999999987 566555310 2579999999997543
No 254
>PRK05868 hypothetical protein; Validated
Probab=29.47 E-value=66 Score=29.01 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..+...|.+ +...|+++++ ++|++++.. ..+||.||-|-|.+|.
T Consensus 105 ~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 105 DDLVELLYG-ATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred HHHHHHHHH-hccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 344444433 3456898887 577776432 2579999999999984
No 255
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=29.43 E-value=64 Score=31.64 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=44.7
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEE-Ee--eeeeeehHHHHHHHHHHHHhCCcEEEE-EeeC-Cc--cccccCCCEE
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGS-YS--ETLVIENSDFLPWAMKRVSKQGGKFRR-GTVS-SF--SGLESEFDFV 123 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~-~~--~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~-~l--~~~~~~ad~V 123 (267)
.++..|.++.+++..+. .+|. .| ++..++ ..++....+.+++.|++|+. ++|. ++ +.....+|+|
T Consensus 328 ~L~~~G~~Vtv~e~~~~-------~GG~l~~gip~~~l~-~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~l~~~~DaV 399 (639)
T PRK12809 328 ILARAGVQVDVFDRHPE-------IGGMLTFGIPPFKLD-KTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAV 399 (639)
T ss_pred HHHHcCCcEEEEeCCCC-------CCCeeeccCCcccCC-HHHHHHHHHHHHHCCeEEEcCCccCCcCCHHHHHhcCCEE
Confidence 44667777777664431 1222 11 122333 55566667788889999987 4553 22 1112478999
Q ss_pred EEccCcCch
Q psy5261 124 FNCAGLGAQ 132 (267)
Q Consensus 124 V~aaG~~s~ 132 (267)
|+|+|++..
T Consensus 400 ~latGa~~~ 408 (639)
T PRK12809 400 FIGVGTYGM 408 (639)
T ss_pred EEeCCCCCC
Confidence 999999753
No 256
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=29.30 E-value=56 Score=24.35 Aligned_cols=49 Identities=8% Similarity=-0.092 Sum_probs=35.5
Q ss_pred eeeeehHHHHHHHHHHHHhCCcEEE-E-EeeCCccc----cc-cCCCEEEEccCcC
Q psy5261 82 TLVIENSDFLPWAMKRVSKQGGKFR-R-GTVSSFSG----LE-SEFDFVFNCAGLG 130 (267)
Q Consensus 82 ~~~vdp~~~~~~L~~~~~~~G~~~~-~-~~V~~l~~----~~-~~ad~VV~aaG~~ 130 (267)
.|..+......+|.+.+++.|.++. + +...++.. .. -.||.||+++...
T Consensus 13 ~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~ 68 (114)
T PRK10427 13 SGVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIE 68 (114)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCC
Confidence 3888888888999999999998876 2 33333322 12 3799999998765
No 257
>PRK06753 hypothetical protein; Provisional
Probab=29.13 E-value=4.1e+02 Score=23.52 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=31.0
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
.++=..+...|.+.+. +.+++. ++|++++.. .+++|.||-|-|.+|.
T Consensus 94 ~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 94 TLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred cccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 3444555666666554 356766 577776432 2579999999999974
No 258
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=28.96 E-value=1.1e+02 Score=23.12 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=34.2
Q ss_pred EeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc--c-cCCCEEEEccC
Q psy5261 79 YSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL--E-SEFDFVFNCAG 128 (267)
Q Consensus 79 ~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~--~-~~ad~VV~aaG 128 (267)
.|.+.+.+..++...+++.++++|+++.-..+...... . ..++.+|+.+=
T Consensus 2 ~Y~S~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 54 (143)
T PF00258_consen 2 VYGSMTGNTEKMAEAIAEGLRERGVEVRVVDLDDFDDSPSDLSEYDLLIFGVS 54 (143)
T ss_dssp EEETSSSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCHHHHHHCTTSEEEEEEE
T ss_pred EEECCchhHHHHHHHHHHHHHHcCCceeeechhhhhhhhhhhhhhceeeEeec
Confidence 45567788999999999999999987655455554421 2 25566666543
No 259
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=28.87 E-value=70 Score=29.94 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.-..
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 45667778888899999987 566665321 2569999999997654
No 260
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=28.54 E-value=88 Score=29.27 Aligned_cols=40 Identities=13% Similarity=-0.093 Sum_probs=25.3
Q ss_pred HHHHHHHhCCcEEEEEeeCCcc---------c--c---ccCCCEEEEccCcCch
Q psy5261 93 WAMKRVSKQGGKFRRGTVSSFS---------G--L---ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~~~V~~l~---------~--~---~~~ad~VV~aaG~~s~ 132 (267)
.+.+.++..|++++..++..+. . . .+++|+||+|||....
T Consensus 105 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~ 158 (475)
T PRK06327 105 GIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR 158 (475)
T ss_pred HHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC
Confidence 3444556679998874332211 0 1 3689999999998653
No 261
>PRK00756 acyltransferase NodA; Provisional
Probab=28.31 E-value=1e+02 Score=24.73 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCC-----CCCceeeeccccCCCCCeEEEeCCCchhhhcc
Q psy5261 186 YSRDISRHDTASILERCYSLLPRLE-----EAPVLYEWCGLRPHRSLVIHNYGHGGYGVTTA 242 (267)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~P~l~-----~~~~~~~w~G~rp~~pdl~~~~G~gg~G~t~a 242 (267)
|.++....+..+|.+...+-+.... .++=.++|+|.||-. -+.|+-++|+...
T Consensus 11 WEneL~ladH~eLaeFfr~tYgptGafnakpFeG~RSWAGARPEl----RaIgyD~~GVaAH 68 (196)
T PRK00756 11 WENELELSDHAELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPEL----RAIAYDSHGVAAH 68 (196)
T ss_pred eccccccchhHHHHHHHHHhcCCcccccccccCcCcccccCCcee----EEEeecCccHhHh
Confidence 4455566666777777777665422 233468999999973 3344444444433
No 262
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=28.25 E-value=64 Score=30.14 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchh
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~ 133 (267)
.+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|.-...
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 4556777888899999987 466666311 25799999999986553
No 263
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=27.93 E-value=76 Score=29.63 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCc
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s 131 (267)
.+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.-.
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 3556777888899999987 466555310 257899999999754
No 264
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=27.46 E-value=68 Score=29.85 Aligned_cols=44 Identities=9% Similarity=-0.000 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCccc------------c--ccCCCEEEEccCcCch
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSG------------L--ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~------------~--~~~ad~VV~aaG~~s~ 132 (267)
.+...+.+.++++|++++. ++|++++. . .+.+|.||+|+|.-..
T Consensus 208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 208 MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 4556777888899999987 45555531 0 2579999999998754
No 265
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=27.42 E-value=68 Score=30.08 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=22.6
Q ss_pred eEEEeC--CCchhhhccHHHHHHHHHHHHh
Q psy5261 228 VIHNYG--HGGYGVTTAPGTSRYAVQLVKQ 255 (267)
Q Consensus 228 l~~~~G--~gg~G~t~a~~~a~~la~li~~ 255 (267)
||++.+ |-|.|+..+...|+.+|+.|..
T Consensus 461 Lyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 461 LWLCGDSIHPGEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred eEEecCccCCCCcHHHHHHHHHHHHHHHhh
Confidence 887732 5578999998999999999864
No 266
>PTZ00058 glutathione reductase; Provisional
Probab=27.35 E-value=81 Score=30.46 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------------ccCCCEEEEccCcCc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s 131 (267)
..+...+.+.++++|++++. .+|.+++.. .+.+|.||+|+|.-.
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~P 336 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSP 336 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCC
Confidence 34556777888899999987 455554310 257999999999754
No 267
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=27.34 E-value=1.2e+02 Score=28.57 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=24.4
Q ss_pred CeEEEeC--CCchhhhccHHHHHHHHHHHHhhh
Q psy5261 227 LVIHNYG--HGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 227 dl~~~~G--~gg~G~t~a~~~a~~la~li~~~l 257 (267)
+||++.+ |.|.|+..+...|+.+|+.|.+.+
T Consensus 460 gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 460 GLYCVGDSCFPGQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3887722 457899999999999999998654
No 268
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=27.17 E-value=91 Score=29.96 Aligned_cols=46 Identities=26% Similarity=0.292 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-Eee-CCcccc--ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTV-SSFSGL--ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V-~~l~~~--~~~ad~VV~aaG~~s~ 132 (267)
|...+..-.+.+++.|+++.. ..+ .++... ...+|+||+|+|.+..
T Consensus 186 ~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 186 PREVLDAEIQRILDLGVEVRLGVRVGEDITLEQLEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEECCcCCHHHHHhhCCEEEEeeCCCCC
Confidence 455666666778889999887 456 444221 2468999999999853
No 269
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=27.06 E-value=1.6e+02 Score=23.60 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=37.2
Q ss_pred EeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCchhh
Q psy5261 79 YSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 79 ~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~~l 134 (267)
.|.+-..+..+....++..+++.|.++--..+..+.+.. ..+|+||+++-......
T Consensus 6 lYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~~h~ 62 (175)
T COG4635 6 LYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRYGHF 62 (175)
T ss_pred EEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhhhhh
Confidence 455555677888999999999998766432222222212 37999999998776443
No 270
>PRK07208 hypothetical protein; Provisional
Probab=26.89 E-value=63 Score=30.09 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLG 130 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~ 130 (267)
..++..|.+.+++.|++++. ++|++|... .+.||+||.|+-.+
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 46778899999999999987 688777421 14589999988875
No 271
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=26.86 E-value=99 Score=28.53 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=36.8
Q ss_pred eeehHHHHHHHHHHHHhCC---cEEEE-EeeCCccc---------c----------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQG---GKFRR-GTVSSFSG---------L----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G---~~~~~-~~V~~l~~---------~----------~~~ad~VV~aaG~~s~ 132 (267)
.++-..+...|.+.+++.+ ++++. ++|++++. . .++||.||-|-|.+|.
T Consensus 113 ~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 113 IIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred EEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4566677788888888775 78887 57777631 0 2689999999999974
No 272
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=26.48 E-value=87 Score=29.46 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=38.4
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeC-Ccccc--ccCCCEEEEccCcCchhhc
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVS-SFSGL--ESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~-~l~~~--~~~ad~VV~aaG~~s~~l~ 135 (267)
..-.+..++....+.+++.|++|+. ++|- .+... .-+.|+|++|+|.+...-+
T Consensus 168 ~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e~Dav~l~~G~~~~~~l 224 (457)
T COG0493 168 DFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPL 224 (457)
T ss_pred hhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHHHHhhCEEEEeccccCCCCC
Confidence 4445577888888899999999987 4664 44322 2356999999999976643
No 273
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.35 E-value=1.2e+02 Score=26.16 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCcEEEEE-eeCCc----ccc----ccCCCEEEEccCcC
Q psy5261 91 LPWAMKRVSKQGGKFRRG-TVSSF----SGL----ESEFDFVFNCAGLG 130 (267)
Q Consensus 91 ~~~L~~~~~~~G~~~~~~-~V~~l----~~~----~~~ad~VV~aaG~~ 130 (267)
..+|++.+.++|+.+.+. .|-+= .+. .-++|.||++.|.+
T Consensus 23 a~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 23 AAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred HHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 578999999999999984 44332 111 13699999999988
No 274
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=26.02 E-value=74 Score=27.09 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=26.2
Q ss_pred HHHHHHHHhC-CcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCc
Q psy5261 92 PWAMKRVSKQ-GGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 92 ~~L~~~~~~~-G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s 131 (267)
..+.+.++++ |++++. +++.+++.. .+.+|.||+|+|.-.
T Consensus 180 ~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 180 KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 3455666676 999886 455544311 257999999999654
No 275
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=25.87 E-value=1.1e+02 Score=31.95 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=44.7
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEEE-e-eeeeeehHHHHHHHHHHHHhCCcEEEEE-e-eCCcccc-ccCCCEEEE
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGSY-S-ETLVIENSDFLPWAMKRVSKQGGKFRRG-T-VSSFSGL-ESEFDFVFN 125 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~~-~-~~~~vdp~~~~~~L~~~~~~~G~~~~~~-~-V~~l~~~-~~~ad~VV~ 125 (267)
.+++.|.++.++++++- + +|.. + -+..--|...+....+.+.+.|++|+.. . ...++.. ...+|+||+
T Consensus 555 ~LAr~G~~VTV~Ek~~~---l----GG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d~~ve~l~~~gYDaVII 627 (1012)
T TIGR03315 555 FLARAGHPVTVFEKKEK---P----GGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTVAELKNQGYKYVIL 627 (1012)
T ss_pred HHHHCCCeEEEEecccc---c----CceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccceEhhhhhcccccEEEE
Confidence 45667777777765431 1 2221 1 1112224566777777888899999874 2 1122222 246899999
Q ss_pred ccCcCch
Q psy5261 126 CAGLGAQ 132 (267)
Q Consensus 126 aaG~~s~ 132 (267)
|+|++..
T Consensus 628 ATGA~~~ 634 (1012)
T TIGR03315 628 AIGAWKH 634 (1012)
T ss_pred CCCCCCC
Confidence 9999853
No 276
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=25.75 E-value=70 Score=29.58 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=25.0
Q ss_pred HhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 99 SKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 99 ~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
++.|++++. ++|++|... .+++|++|+|||....
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 557999876 688776532 1478999999998753
No 277
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=25.69 E-value=75 Score=28.71 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc----------c-----ccCCCEEEEccCcCc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG----------L-----ESEFDFVFNCAGLGA 131 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~----------~-----~~~ad~VV~aaG~~s 131 (267)
-++-..|...+++.|+.+.. .+|..... . .++||.+|+|+|...
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccc
Confidence 34445555666666666554 24443321 1 257888888888763
No 278
>PTZ00052 thioredoxin reductase; Provisional
Probab=25.12 E-value=81 Score=29.86 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
.+...+.+.++++|++++. ..+..++.. .+.+|.|++|+|.-..
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 3556777888899999987 455444311 2579999999998654
No 279
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=25.10 E-value=88 Score=31.55 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 90 FLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 90 ~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
....+.+.++++|++++. +.|+++... .+.+|.||+|+|.-.+
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 345667778889999997 456555311 2679999999997643
No 280
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=24.83 E-value=70 Score=24.07 Aligned_cols=43 Identities=19% Similarity=0.037 Sum_probs=28.8
Q ss_pred hccCCCCceE---EEEEeeEeccCCchhHhhhCCCcEECChhhhhcC
Q psy5261 27 KFSADGSTGK---AMISTYQTSLLKNASIENLVPVYRDAQPDELVVG 70 (267)
Q Consensus 27 ~~~~~~~~g~---~~~~g~~~~~~~~~~~~~~g~~~~~l~~~el~~~ 70 (267)
+++-.+++|+ ..+.++.+|.++.+.+..+|... .||++|+++.
T Consensus 43 FYaSredqGf~GEAeie~Ve~~en~~ei~ekygd~l-FLT~eElkkY 88 (145)
T COG2028 43 FYASREDQGFYGEAEIERVELFENPMEIIEKYGDRL-FLTPEELKKY 88 (145)
T ss_pred EEEecccCcccceeEEEEEeeecCHHHHHHHhCCee-ecCHHHHHHH
Confidence 3344555565 24666777777767777777666 7888888764
No 281
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=24.64 E-value=37 Score=29.24 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCcEEEE-EeeCCccc--c--------------c-----cCCCEEEEccCc-Cchhhc
Q psy5261 92 PWAMKRVSKQGGKFRR-GTVSSFSG--L--------------E-----SEFDFVFNCAGL-GAQALC 135 (267)
Q Consensus 92 ~~L~~~~~~~G~~~~~-~~V~~l~~--~--------------~-----~~ad~VV~aaG~-~s~~l~ 135 (267)
.+|..+.++.|++|+. ++|+.|.. . . +.++.||+|+|+ .|+.|+
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 3444444344899998 78888822 1 1 258999999997 466765
No 282
>PRK06370 mercuric reductase; Validated
Probab=24.47 E-value=1.1e+02 Score=28.43 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=24.5
Q ss_pred HHHHHHHhC-CcEEEEEeeCCc-------cccccCCCEEEEccCcCc
Q psy5261 93 WAMKRVSKQ-GGKFRRGTVSSF-------SGLESEFDFVFNCAGLGA 131 (267)
Q Consensus 93 ~L~~~~~~~-G~~~~~~~V~~l-------~~~~~~ad~VV~aaG~~s 131 (267)
.+...+++. |++++..+...+ ....+++|+||+|||...
T Consensus 99 ~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p 145 (463)
T PRK06370 99 GSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARA 145 (463)
T ss_pred hHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCC
Confidence 344555666 999987322111 111368999999999854
No 283
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=24.03 E-value=55 Score=30.08 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=25.5
Q ss_pred ccCCCCCeEEEeCCCchhhhccHHHHHHHHHHH
Q psy5261 221 LRPHRSLVIHNYGHGGYGVTTAPGTSRYAVQLV 253 (267)
Q Consensus 221 ~rp~~pdl~~~~G~gg~G~t~a~~~a~~la~li 253 (267)
+.+..|.+.|+|||-+|. +.+.++|+.+++..
T Consensus 91 ~~S~~~G~mHACGHD~Ht-a~lLgaA~~L~~~~ 122 (392)
T COG1473 91 FASKNPGVMHACGHDGHT-AILLGAALALAEHK 122 (392)
T ss_pred cccCCCCCcccCCchHHH-HHHHHHHHHHHhhh
Confidence 444455588999998886 88899999999875
No 284
>PTZ00058 glutathione reductase; Provisional
Probab=23.31 E-value=1.5e+02 Score=28.72 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=12.0
Q ss_pred cCCCEEEEccCcCc
Q psy5261 118 SEFDFVFNCAGLGA 131 (267)
Q Consensus 118 ~~ad~VV~aaG~~s 131 (267)
+++|.||+|||...
T Consensus 201 i~ad~lVIATGS~P 214 (561)
T PTZ00058 201 IEGKNILIAVGNKP 214 (561)
T ss_pred EECCEEEEecCCCC
Confidence 68999999999743
No 285
>PRK09271 flavodoxin; Provisional
Probab=23.18 E-value=3.2e+02 Score=21.25 Aligned_cols=53 Identities=8% Similarity=0.018 Sum_probs=37.1
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEee--CCccc---cccCCCEEEEccCcC
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTV--SSFSG---LESEFDFVFNCAGLG 130 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V--~~l~~---~~~~ad~VV~aaG~~ 130 (267)
+.|.+.+.|..++...+++.+++.|+++.-..+ ..+.. ....+|.||+++-.|
T Consensus 5 IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~ 62 (160)
T PRK09271 5 LAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTD 62 (160)
T ss_pred EEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECccc
Confidence 456668889999999999999999987642222 22211 123689999999554
No 286
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=23.10 E-value=99 Score=32.78 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHh---CCcEEEE-EeeCCccc-------------------------c----ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSK---QGGKFRR-GTVSSFSG-------------------------L----ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~---~G~~~~~-~~V~~l~~-------------------------~----~~~ad~VV~aaG~~s~ 132 (267)
..++..|.+.+++ .|++|+. +++++|.. . .+.|+.||+|||-+..
T Consensus 544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred HHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 5567777777765 4899877 56555431 1 2578999999998775
No 287
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=23.08 E-value=1.4e+02 Score=27.58 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=23.2
Q ss_pred HHHHhCCcEEEEEeeCCcc-------c----cccCCCEEEEccCcCc
Q psy5261 96 KRVSKQGGKFRRGTVSSFS-------G----LESEFDFVFNCAGLGA 131 (267)
Q Consensus 96 ~~~~~~G~~~~~~~V~~l~-------~----~~~~ad~VV~aaG~~s 131 (267)
..+++.|++++..++..+. . ..+++|+||+|+|...
T Consensus 97 ~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p 143 (461)
T TIGR01350 97 GLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRP 143 (461)
T ss_pred HHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCC
Confidence 3455678998874332221 1 1367999999999754
No 288
>PRK08105 flavodoxin; Provisional
Probab=22.96 E-value=2.2e+02 Score=22.01 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=38.5
Q ss_pred EEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCc
Q psy5261 77 GSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGA 131 (267)
Q Consensus 77 g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s 131 (267)
.++|.+-+.|...+...+++.+++.|.++.-..+.++.... ..++.||+.+-.|.
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~sT~G 60 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTG 60 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEECCCC
Confidence 45677788899999999999999999876543333332222 34678888777663
No 289
>KOG1399|consensus
Probab=22.95 E-value=1.3e+02 Score=28.24 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=39.2
Q ss_pred ChhhhhcCCCCceeEEEeeeeeeehHHHHHHHHHHHHhCCc--EEEE-E---eeCCccc-c-------c------cCCCE
Q psy5261 63 QPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGG--KFRR-G---TVSSFSG-L-------E------SEFDF 122 (267)
Q Consensus 63 ~~~el~~~P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~--~~~~-~---~V~~l~~-~-------~------~~ad~ 122 (267)
.+.|+..+| ++-.--.++...-+-..++.+|...|+..+. .|.+ + +|..+.+ . . .-+|.
T Consensus 66 ~pKe~~~~~-dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~ 144 (448)
T KOG1399|consen 66 LPKEMMGYS-DFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDA 144 (448)
T ss_pred CChhhhcCC-CCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeE
Confidence 455555543 2222112333445556888999999888874 3333 3 3444431 1 1 13799
Q ss_pred EEEccCcCc
Q psy5261 123 VFNCAGLGA 131 (267)
Q Consensus 123 VV~aaG~~s 131 (267)
||+|+|.+.
T Consensus 145 VvVctGh~~ 153 (448)
T KOG1399|consen 145 VVVCTGHYV 153 (448)
T ss_pred EEEcccCcC
Confidence 999999996
No 290
>PHA02540 61 DNA primase; Provisional
Probab=22.94 E-value=84 Score=28.25 Aligned_cols=44 Identities=14% Similarity=-0.084 Sum_probs=26.8
Q ss_pred HHHhhCCCCCCCCceeeeccccCCCCC-------------------eEEEeCCCchhhhccHH
Q psy5261 201 RCYSLLPRLEEAPVLYEWCGLRPHRSL-------------------VIHNYGHGGYGVTTAPG 244 (267)
Q Consensus 201 ~~~~~~P~l~~~~~~~~w~G~rp~~pd-------------------l~~~~G~gg~G~t~a~~ 244 (267)
++...+|.+....-...|.|+-|+..| +|+|.|+|-+|=.....
T Consensus 9 ~~~~~~~~f~~~~~~~~~~~~CPf~~ds~~~~~kpsF~V~p~k~~~~yhCFgCGa~Gd~i~Fl 71 (337)
T PHA02540 9 RASPHLPKFKQVRRSSFYNFRCPICGDSQKDKNKARGWIYEKKDGGVFKCHNCGYHRPFGNFL 71 (337)
T ss_pred HHHHHHhhhheeccCceEEecCCCCCCccccCcCCcEEEeccCCceEEEecCCCCCCCHHHHH
Confidence 444444544433222229999999544 88999988777544443
No 291
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=22.82 E-value=1e+02 Score=29.51 Aligned_cols=15 Identities=13% Similarity=-0.117 Sum_probs=12.5
Q ss_pred cCCCEEEEccCcCch
Q psy5261 118 SEFDFVFNCAGLGAQ 132 (267)
Q Consensus 118 ~~ad~VV~aaG~~s~ 132 (267)
+.|+.||+|||-++.
T Consensus 214 i~AkaVILATGGf~~ 228 (549)
T PRK12834 214 LRAQAVIVTSGGIGG 228 (549)
T ss_pred EecCEEEEeCCCccc
Confidence 468999999998864
No 292
>PRK07846 mycothione reductase; Reviewed
Probab=22.78 E-value=72 Score=29.69 Aligned_cols=34 Identities=21% Similarity=0.072 Sum_probs=22.1
Q ss_pred HHhCCcEEEEEeeCCccc--------cccCCCEEEEccCcCc
Q psy5261 98 VSKQGGKFRRGTVSSFSG--------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 98 ~~~~G~~~~~~~V~~l~~--------~~~~ad~VV~aaG~~s 131 (267)
+++.|++++..+..-+.. ..+++|++|+|||...
T Consensus 99 ~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p 140 (451)
T PRK07846 99 RDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRP 140 (451)
T ss_pred hhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCC
Confidence 556789888743222211 1368999999999743
No 293
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=22.60 E-value=98 Score=31.58 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCcEEEE-EeeCCcccc--------------ccCCCEEEEccCcCchh
Q psy5261 90 FLPWAMKRVSKQGGKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 90 ~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~~ 133 (267)
....+.+.++++|++++. ..|+++... .+.+|.||+|+|.-.+.
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 345677888999999987 466555310 26799999999987543
No 294
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=22.10 E-value=3.4e+02 Score=24.27 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=36.5
Q ss_pred CCCc-eeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccc
Q psy5261 71 NKTY-KYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSG 115 (267)
Q Consensus 71 P~~~-~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~ 115 (267)
| +. .-|++|.++.-|+..++.-+.+.+++.|.++++..|.+..+
T Consensus 157 P-nak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~nd 201 (322)
T COG2984 157 P-NAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVND 201 (322)
T ss_pred C-CCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccc
Confidence 7 44 46788888999999999999999999999999866655543
No 295
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=22.05 E-value=1.5e+02 Score=23.85 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~ 132 (267)
..|+..+.+.+++.|+++...++....... -.+|.||+..|..+.
T Consensus 11 dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~ 56 (190)
T PRK06895 11 DSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVP 56 (190)
T ss_pred CchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCCh
Confidence 457777888899999877654443322222 268999999999854
No 296
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=21.47 E-value=62 Score=31.20 Aligned_cols=73 Identities=10% Similarity=-0.036 Sum_probs=49.8
Q ss_pred hhhCCCcEECChhhhhcCCCCceeEEEe-eeeeeehHHHHHHHHHHHHhC-CcEEEEEeeCCcccc--------------
Q psy5261 53 ENLVPVYRDAQPDELVVGNKTYKYGSYS-ETLVIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGL-------------- 116 (267)
Q Consensus 53 ~~~g~~~~~l~~~el~~~P~~~~~g~~~-~~~~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~-------------- 116 (267)
...++.+++|+... +-+.. +.+++|=..|-.++.+.+++. +..+++..|.++...
T Consensus 73 D~~~IQ~r~LN~sK---------GPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~ 143 (621)
T COG0445 73 DKAGIQFRMLNSSK---------GPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGP 143 (621)
T ss_pred hhcCCchhhccCCC---------cchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCC
Confidence 44566676665321 21233 348999999999999888764 677777677666431
Q ss_pred ccCCCEEEEccCcCchhh
Q psy5261 117 ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 117 ~~~ad~VV~aaG~~s~~l 134 (267)
.+.|++||++||...+..
T Consensus 144 ~~~a~aVVlTTGTFL~G~ 161 (621)
T COG0445 144 EFHAKAVVLTTGTFLRGK 161 (621)
T ss_pred eeecCEEEEeecccccce
Confidence 268999999999876543
No 297
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=21.30 E-value=1.1e+02 Score=28.91 Aligned_cols=45 Identities=24% Similarity=0.240 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc-----------c----ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG-----------L----ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~-----------~----~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++|+. ..+..++. . .+.+|.||+|+|.-..
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 34566777888899999986 33333321 0 2579999999997643
No 298
>PLN02852 ferredoxin-NADP+ reductase
Probab=21.23 E-value=1.4e+02 Score=28.30 Aligned_cols=70 Identities=13% Similarity=-0.010 Sum_probs=40.8
Q ss_pred hCCCcEECChhhhhcCCCCceeEEE-e--eeeeeehHHHHHHHHHHHHhCCcEEEE-EeeC-Cc--cccccCCCEEEEcc
Q psy5261 55 LVPVYRDAQPDELVVGNKTYKYGSY-S--ETLVIENSDFLPWAMKRVSKQGGKFRR-GTVS-SF--SGLESEFDFVFNCA 127 (267)
Q Consensus 55 ~g~~~~~l~~~el~~~P~~~~~g~~-~--~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~-~l--~~~~~~ad~VV~aa 127 (267)
.|.++.++++.. .| +|+. + .+..-.+..++..+.+.++..|++|+. .+|. ++ ++....+|+||+|+
T Consensus 50 ~g~~Vtv~E~~p---~p----gGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~dvtl~~L~~~yDaVIlAt 122 (491)
T PLN02852 50 DGARVDIIERLP---TP----FGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDVSLSELRDLYHVVVLAY 122 (491)
T ss_pred CCCeEEEEecCC---CC----cceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECccccHHHHhhhCCEEEEec
Confidence 577787777543 12 3322 1 122233445555666666778899875 3442 12 22124699999999
Q ss_pred CcCc
Q psy5261 128 GLGA 131 (267)
Q Consensus 128 G~~s 131 (267)
|++.
T Consensus 123 Ga~~ 126 (491)
T PLN02852 123 GAES 126 (491)
T ss_pred CCCC
Confidence 9985
No 299
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=20.73 E-value=37 Score=30.22 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchh
Q psy5261 91 LPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 91 ~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~ 133 (267)
...+...+...|.+++. ++|++|+.. .++||+||+|+....-.
T Consensus 212 ~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 267 (450)
T PF01593_consen 212 SLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLK 267 (450)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHH
T ss_pred hHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhhhh
Confidence 34445555556778887 788888653 25799999999987543
No 300
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=20.59 E-value=1.5e+02 Score=27.91 Aligned_cols=39 Identities=3% Similarity=-0.117 Sum_probs=25.5
Q ss_pred HHHHHHHhCCcEEEEE--eeCCccc----------cccCCCEEEEccCcCc
Q psy5261 93 WAMKRVSKQGGKFRRG--TVSSFSG----------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~~--~V~~l~~----------~~~~ad~VV~aaG~~s 131 (267)
.+...+++.|+++++. ++.+-.+ ..+++|.||+|||.-.
T Consensus 105 ~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 105 GYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred HHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 3444567789999873 4444111 1268999999999843
No 301
>PRK11538 ribosome-associated protein; Provisional
Probab=20.56 E-value=1.8e+02 Score=21.33 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCc-EEEEEeeCCccccccCCCEEEEccCcCchhhc
Q psy5261 88 SDFLPWAMKRVSKQGG-KFRRGTVSSFSGLESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~-~~~~~~V~~l~~~~~~ad~VV~aaG~~s~~l~ 135 (267)
..++...++.+....+ .+.--.|... ..-+|.+|+|||...+.+-
T Consensus 4 ~~~~~~i~~~l~dkKa~DI~vlDv~~~---~~~~Dy~VIatg~S~rh~~ 49 (105)
T PRK11538 4 KALQDFVIDKIDDLKGQDIIALDVQGK---SSITDCMIICTGTSSRHVM 49 (105)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCC---CcccCEEEEEEeCCHHHHH
Confidence 3455556666655433 3332233332 2358999999999877653
No 302
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=20.34 E-value=1.5e+02 Score=26.77 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc------------c----ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG------------L----ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~------------~----~~~ad~VV~aaG~~s~ 132 (267)
..+...|.+.+.+.|+.++. .+++.+.+ . .++||.||-|-|.+|.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 45677888888888888776 34433311 1 2578999999999984
No 303
>PRK14694 putative mercuric reductase; Provisional
Probab=20.19 E-value=1.1e+02 Score=28.51 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=21.4
Q ss_pred CcEEEEEeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 102 GGKFRRGTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 102 G~~~~~~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
|++++..+|+.++.. .+++|++|+|||...
T Consensus 111 ~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p 152 (468)
T PRK14694 111 AITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARP 152 (468)
T ss_pred CeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCC
Confidence 788887655554321 268999999999854
No 304
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=20.11 E-value=1.9e+02 Score=27.22 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCcEEEE-E-eeCC-----ccc---cccCCCEEEEccCcCchhh
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-G-TVSS-----FSG---LESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~-~V~~-----l~~---~~~~ad~VV~aaG~~s~~l 134 (267)
.+....+...++++|++++. + +..+ +.. ..++|+.+|+|||.....+
T Consensus 94 ~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 94 RLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIP 150 (454)
T ss_pred HHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCC
No 305
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=20.03 E-value=2.3e+02 Score=23.04 Aligned_cols=57 Identities=7% Similarity=-0.018 Sum_probs=38.4
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhC-CcEEEEEeeCCccc--------------------cc-cCCCEEEEccCcCchhh
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSG--------------------LE-SEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~--------------------~~-~~ad~VV~aaG~~s~~l 134 (267)
+.|.+...|..++++.+++.+++. |+++....|.+... .. ..+|.||+++..|...+
T Consensus 5 IiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~g~~ 83 (197)
T TIGR01755 5 VLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRFGNM 83 (197)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccccCc
Confidence 445556788899999999999875 87765433322110 11 36899999998886554
No 306
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=20.01 E-value=1.3e+02 Score=31.23 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=31.6
Q ss_pred ehHHHHHHHHHHHHhCC-cEEEE-EeeCCccc-----------------------c---ccCCCEEEEccCcCchh
Q psy5261 86 ENSDFLPWAMKRVSKQG-GKFRR-GTVSSFSG-----------------------L---ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G-~~~~~-~~V~~l~~-----------------------~---~~~ad~VV~aaG~~s~~ 133 (267)
++..+...+.+++++.+ ++++. ++|.++.. . .+++++||+|||+.-+.
T Consensus 213 ~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 213 PAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred cHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 45566677777777664 88876 45533210 0 25799999999986543
Done!