Query psy5261
Match_columns 267
No_of_seqs 252 out of 1803
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 21:53:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g3e_A D-amino-acid oxidase; F 100.0 1.3E-34 4.5E-39 257.9 20.6 232 34-267 87-347 (351)
2 1c0p_A D-amino acid oxidase; a 100.0 3.7E-29 1.3E-33 223.7 23.0 225 29-258 82-359 (363)
3 3nyc_A D-arginine dehydrogenas 100.0 2.6E-28 8.7E-33 218.5 15.3 218 37-256 88-358 (381)
4 1y56_B Sarcosine oxidase; dehy 99.9 2E-27 6.7E-32 213.4 16.3 206 51-257 106-356 (382)
5 2gf3_A MSOX, monomeric sarcosi 99.9 1.3E-26 4.5E-31 208.2 17.3 206 51-257 107-365 (389)
6 3dme_A Conserved exported prot 99.9 3.8E-27 1.3E-31 209.6 12.5 203 52-254 110-368 (369)
7 2uzz_A N-methyl-L-tryptophan o 99.9 9E-27 3.1E-31 208.3 14.7 219 37-257 84-358 (372)
8 3axb_A Putative oxidoreductase 99.9 2.9E-26 9.8E-31 210.5 13.6 194 63-256 154-418 (448)
9 1ryi_A Glycine oxidase; flavop 99.9 1.9E-25 6.4E-30 200.4 14.9 199 57-256 128-362 (382)
10 2gag_B Heterotetrameric sarcos 99.9 4.2E-25 1.4E-29 199.5 14.5 207 51-257 126-376 (405)
11 3ps9_A TRNA 5-methylaminomethy 99.9 6.6E-25 2.3E-29 211.5 16.5 203 52-256 375-645 (676)
12 3pvc_A TRNA 5-methylaminomethy 99.9 8.3E-25 2.8E-29 211.3 16.9 203 52-256 370-649 (689)
13 2oln_A NIKD protein; flavoprot 99.9 8.2E-23 2.8E-27 184.4 17.8 204 51-257 110-375 (397)
14 3dje_A Fructosyl amine: oxygen 99.9 7.8E-23 2.7E-27 187.0 17.0 205 54-258 116-386 (438)
15 3c4n_A Uncharacterized protein 99.9 3.3E-23 1.1E-27 188.1 12.9 195 61-258 135-399 (405)
16 1pj5_A N,N-dimethylglycine oxi 99.9 2.8E-22 9.6E-27 197.3 14.6 203 51-257 108-380 (830)
17 2rgh_A Alpha-glycerophosphate 99.9 4.3E-21 1.5E-25 181.5 18.2 200 54-257 149-412 (571)
18 2qcu_A Aerobic glycerol-3-phos 99.8 9.8E-21 3.4E-25 176.4 15.7 200 58-257 113-373 (501)
19 3da1_A Glycerol-3-phosphate de 99.8 2E-20 6.8E-25 176.6 17.2 200 56-259 133-394 (561)
20 3cgv_A Geranylgeranyl reductas 98.4 1.5E-06 5.3E-11 77.2 9.8 172 83-257 97-315 (397)
21 3nix_A Flavoprotein/dehydrogen 98.1 2.5E-06 8.6E-11 76.6 6.0 173 83-258 101-327 (421)
22 2weu_A Tryptophan 5-halogenase 98.0 6.9E-05 2.4E-09 69.2 13.9 167 83-255 168-374 (511)
23 2e4g_A Tryptophan halogenase; 97.7 0.00039 1.3E-08 65.0 13.0 167 83-254 189-396 (550)
24 3atr_A Conserved archaeal prot 97.7 0.00079 2.7E-08 61.2 13.9 170 83-257 95-320 (453)
25 3oz2_A Digeranylgeranylglycero 97.6 0.00019 6.6E-09 63.1 8.9 173 83-258 97-316 (397)
26 3i3l_A Alkylhalidase CMLS; fla 97.4 0.00019 6.5E-09 67.8 6.6 174 83-257 123-346 (591)
27 2aqj_A Tryptophan halogenase, 97.4 0.0022 7.4E-08 59.7 13.3 165 83-254 160-365 (538)
28 3ka7_A Oxidoreductase; structu 97.0 0.0047 1.6E-07 55.1 10.6 167 87-255 195-425 (425)
29 3nks_A Protoporphyrinogen oxid 96.9 0.0021 7.3E-08 58.4 7.9 165 88-256 234-473 (477)
30 3lov_A Protoporphyrinogen oxid 96.8 0.0065 2.2E-07 55.2 10.5 166 89-259 237-467 (475)
31 3i6d_A Protoporphyrinogen oxid 96.8 0.0064 2.2E-07 54.8 10.1 168 88-257 235-468 (470)
32 3fmw_A Oxygenase; mithramycin, 96.7 0.0038 1.3E-07 58.6 8.3 172 83-257 143-360 (570)
33 2pyx_A Tryptophan halogenase; 96.6 0.015 5.3E-07 53.7 11.1 167 83-254 170-380 (526)
34 2qa2_A CABE, polyketide oxygen 96.5 0.12 4E-06 47.5 16.2 170 83-257 102-316 (499)
35 3e1t_A Halogenase; flavoprotei 96.4 0.0038 1.3E-07 57.6 6.0 176 83-258 106-335 (512)
36 2qa1_A PGAE, polyketide oxygen 96.2 0.13 4.4E-06 47.3 15.1 170 83-257 101-315 (500)
37 2gmh_A Electron transfer flavo 96.2 0.025 8.7E-07 53.1 10.4 173 83-258 139-386 (584)
38 3rp8_A Flavoprotein monooxygen 95.9 0.024 8.1E-07 50.3 8.4 171 83-255 122-337 (407)
39 3c4a_A Probable tryptophan hyd 95.6 0.27 9.1E-06 43.1 13.9 172 83-255 93-298 (381)
40 3nrn_A Uncharacterized protein 95.5 0.12 4E-06 46.0 11.2 163 87-253 188-403 (421)
41 3ihg_A RDME; flavoenzyme, anth 94.4 0.47 1.6E-05 43.7 12.5 50 83-132 115-184 (535)
42 2bs2_A Quinol-fumarate reducta 94.1 0.029 9.9E-07 53.6 3.4 76 59-134 124-223 (660)
43 2ivd_A PPO, PPOX, protoporphyr 93.8 0.52 1.8E-05 42.4 11.3 69 190-258 385-474 (478)
44 2cul_A Glucose-inhibited divis 92.9 0.08 2.8E-06 43.2 3.8 49 86-134 66-128 (232)
45 3v76_A Flavoprotein; structura 92.7 0.052 1.8E-06 48.8 2.7 48 84-131 128-187 (417)
46 2i0z_A NAD(FAD)-utilizing dehy 91.8 0.088 3E-06 47.5 3.0 46 86-131 132-191 (447)
47 3ihm_A Styrene monooxygenase A 91.1 0.33 1.1E-05 43.4 6.1 50 83-132 117-168 (430)
48 3nlc_A Uncharacterized protein 91.1 0.084 2.9E-06 49.2 2.1 49 84-132 216-278 (549)
49 1y0p_A Fumarate reductase flav 90.7 0.16 5.4E-06 47.4 3.7 50 83-132 250-318 (571)
50 2ywl_A Thioredoxin reductase r 90.7 0.18 6E-06 39.1 3.4 79 51-132 19-111 (180)
51 2gqf_A Hypothetical protein HI 90.1 0.14 4.9E-06 45.6 2.7 46 86-131 107-168 (401)
52 2bcg_G Secretory pathway GDP d 89.7 0.17 5.8E-06 45.7 2.9 48 87-134 241-303 (453)
53 4at0_A 3-ketosteroid-delta4-5a 89.6 0.16 5.6E-06 46.6 2.7 48 85-132 198-265 (510)
54 1qo8_A Flavocytochrome C3 fuma 89.2 0.17 5.7E-06 47.2 2.5 50 83-132 245-313 (566)
55 3alj_A 2-methyl-3-hydroxypyrid 88.8 0.38 1.3E-05 42.0 4.4 50 83-132 102-161 (379)
56 3ces_A MNMG, tRNA uridine 5-ca 88.4 0.28 9.6E-06 46.6 3.4 50 83-132 119-182 (651)
57 1d5t_A Guanine nucleotide diss 88.1 0.15 5.2E-06 45.8 1.4 48 87-134 233-293 (433)
58 1d4d_A Flavocytochrome C fumar 88.0 0.33 1.1E-05 45.3 3.7 50 83-132 250-318 (572)
59 4dgk_A Phytoene dehydrogenase; 87.9 0.26 8.7E-06 44.8 2.8 45 87-131 220-278 (501)
60 2zxi_A TRNA uridine 5-carboxym 87.8 0.45 1.5E-05 45.0 4.4 50 83-132 118-181 (637)
61 2x3n_A Probable FAD-dependent 87.7 0.23 7.9E-06 43.7 2.3 171 83-257 102-324 (399)
62 2wdq_A Succinate dehydrogenase 87.1 0.46 1.6E-05 44.5 4.0 49 86-134 141-209 (588)
63 2h88_A Succinate dehydrogenase 86.9 0.4 1.4E-05 45.3 3.5 49 86-134 153-220 (621)
64 4a9w_A Monooxygenase; baeyer-v 86.2 0.4 1.4E-05 40.9 2.9 54 83-136 71-137 (357)
65 3cp8_A TRNA uridine 5-carboxym 86.1 0.43 1.5E-05 45.2 3.2 51 83-133 112-176 (641)
66 1rp0_A ARA6, thiazole biosynth 86.0 0.35 1.2E-05 40.6 2.5 62 86-147 117-217 (284)
67 3d1c_A Flavin-containing putat 85.8 0.42 1.4E-05 41.2 2.9 49 84-132 84-144 (369)
68 2e5v_A L-aspartate oxidase; ar 85.1 0.65 2.2E-05 42.1 3.9 49 84-133 115-178 (472)
69 1kf6_A Fumarate reductase flav 83.5 0.75 2.6E-05 43.2 3.7 47 87-133 133-199 (602)
70 1vdc_A NTR, NADPH dependent th 83.5 0.58 2E-05 39.7 2.7 49 84-132 66-125 (333)
71 2v3a_A Rubredoxin reductase; a 82.2 0.61 2.1E-05 40.8 2.4 59 87-145 186-258 (384)
72 3fbs_A Oxidoreductase; structu 82.1 0.6 2E-05 38.7 2.2 78 51-131 20-112 (297)
73 1k0i_A P-hydroxybenzoate hydro 81.6 1.1 3.9E-05 39.0 3.9 48 85-132 100-164 (394)
74 3f8d_A Thioredoxin reductase ( 80.9 0.81 2.8E-05 38.3 2.6 79 51-131 33-125 (323)
75 2q0l_A TRXR, thioredoxin reduc 80.8 0.6 2E-05 39.2 1.7 80 51-132 19-115 (311)
76 3qj4_A Renalase; FAD/NAD(P)-bi 80.3 7.3 0.00025 33.0 8.6 165 88-256 112-341 (342)
77 2bry_A NEDD9 interacting prote 80.1 2.2 7.7E-05 38.8 5.5 49 84-132 162-231 (497)
78 3p1w_A Rabgdi protein; GDI RAB 79.9 0.55 1.9E-05 42.9 1.2 50 78-130 248-313 (475)
79 4evu_A Putative periplasmic pr 79.7 5 0.00017 26.4 5.5 48 56-107 3-52 (72)
80 3lxd_A FAD-dependent pyridine 79.1 1.3 4.5E-05 39.1 3.5 51 86-136 192-257 (415)
81 3h8l_A NADH oxidase; membrane 78.9 0.66 2.3E-05 40.9 1.4 51 88-138 218-277 (409)
82 3fg2_P Putative rubredoxin red 77.9 1.1 3.9E-05 39.4 2.6 60 86-145 182-256 (404)
83 2q7v_A Thioredoxin reductase; 77.3 1.2 4.2E-05 37.6 2.6 80 51-132 26-124 (325)
84 1yvv_A Amine oxidase, flavin-c 75.8 21 0.00071 29.8 10.1 158 102-259 119-329 (336)
85 1w4x_A Phenylacetone monooxyge 75.4 1.6 5.5E-05 40.2 3.1 68 84-151 90-175 (542)
86 3gwf_A Cyclohexanone monooxyge 75.3 1.9 6.7E-05 39.8 3.6 68 83-150 82-167 (540)
87 2zbw_A Thioredoxin reductase; 75.2 1.9 6.4E-05 36.5 3.2 48 84-131 61-121 (335)
88 1zk7_A HGII, reductase, mercur 75.1 1.1 3.7E-05 40.4 1.8 46 87-132 215-272 (467)
89 3k7m_X 6-hydroxy-L-nicotine ox 75.0 14 0.00049 32.2 9.1 38 93-131 208-259 (431)
90 3ef6_A Toluene 1,2-dioxygenase 74.3 1.5 5.2E-05 38.7 2.5 50 87-136 184-247 (410)
91 2vvm_A Monoamine oxidase N; FA 74.2 1.2 4.3E-05 40.1 1.9 45 87-131 254-312 (495)
92 2xve_A Flavin-containing monoo 74.0 1.7 5.9E-05 39.2 2.8 53 83-135 96-170 (464)
93 3gyx_A Adenylylsulfate reducta 73.8 2.1 7.1E-05 40.7 3.4 49 84-132 162-234 (662)
94 3jsk_A Cypbp37 protein; octame 73.4 3.3 0.00011 36.0 4.4 28 86-113 158-187 (344)
95 1xdi_A RV3303C-LPDA; reductase 72.6 1.4 4.9E-05 40.0 1.9 47 87-133 222-281 (499)
96 3iwa_A FAD-dependent pyridine 72.4 2 6.7E-05 38.7 2.8 46 87-132 201-259 (472)
97 3itj_A Thioredoxin reductase 1 72.0 2.1 7.1E-05 36.0 2.7 82 51-132 40-143 (338)
98 3cty_A Thioredoxin reductase; 71.6 1.2 4.2E-05 37.5 1.2 81 51-132 34-127 (319)
99 3lzw_A Ferredoxin--NADP reduct 71.6 2 6.9E-05 36.0 2.6 78 51-130 25-122 (332)
100 3ab1_A Ferredoxin--NADP reduct 71.3 2.4 8.3E-05 36.3 3.0 79 51-131 32-131 (360)
101 1fl2_A Alkyl hydroperoxide red 70.4 2 7E-05 35.8 2.3 50 83-132 51-116 (310)
102 3k30_A Histamine dehydrogenase 69.8 2.9 9.8E-05 39.8 3.4 46 87-132 566-625 (690)
103 2gv8_A Monooxygenase; FMO, FAD 69.0 2.5 8.6E-05 37.7 2.7 51 85-135 112-181 (447)
104 1jnr_A Adenylylsulfate reducta 68.1 2.6 8.8E-05 39.8 2.7 50 84-133 147-220 (643)
105 3sx6_A Sulfide-quinone reducta 67.5 0.98 3.4E-05 40.3 -0.4 74 55-132 29-113 (437)
106 2yqu_A 2-oxoglutarate dehydrog 67.3 2 6.9E-05 38.4 1.7 46 88-133 208-266 (455)
107 4g6h_A Rotenone-insensitive NA 66.1 4.2 0.00014 37.1 3.6 47 87-133 271-334 (502)
108 1fec_A Trypanothione reductase 65.1 3.3 0.00011 37.6 2.7 46 88-133 231-290 (490)
109 3o0h_A Glutathione reductase; 64.5 2.7 9.4E-05 37.9 2.0 45 88-132 232-289 (484)
110 1trb_A Thioredoxin reductase; 64.5 3.1 0.00011 34.8 2.3 80 51-131 23-116 (320)
111 3oc4_A Oxidoreductase, pyridin 64.0 3.9 0.00013 36.5 2.9 46 87-132 188-245 (452)
112 1mo9_A ORF3; nucleotide bindin 64.0 3.3 0.00011 37.9 2.5 47 87-133 254-318 (523)
113 1chu_A Protein (L-aspartate ox 63.9 2.1 7.3E-05 39.5 1.2 48 86-133 136-210 (540)
114 2a87_A TRXR, TR, thioredoxin r 63.7 3.3 0.00011 35.1 2.2 79 51-132 32-127 (335)
115 3klj_A NAD(FAD)-dependent dehy 63.6 1.4 4.7E-05 38.8 -0.2 75 52-130 28-115 (385)
116 2gqw_A Ferredoxin reductase; f 63.4 5.7 0.0002 34.9 3.9 50 87-136 186-245 (408)
117 3klj_A NAD(FAD)-dependent dehy 63.1 4.3 0.00015 35.6 2.9 57 88-145 188-246 (385)
118 3h8l_A NADH oxidase; membrane 63.0 0.74 2.5E-05 40.6 -2.1 73 55-131 26-113 (409)
119 4ap3_A Steroid monooxygenase; 62.5 2.9 0.0001 38.6 1.8 54 83-136 94-164 (549)
120 3ics_A Coenzyme A-disulfide re 62.4 4.9 0.00017 37.2 3.4 45 88-132 228-283 (588)
121 1m6i_A Programmed cell death p 61.9 3.8 0.00013 37.2 2.4 46 87-132 225-283 (493)
122 4a5l_A Thioredoxin reductase; 61.5 4.3 0.00015 33.8 2.6 81 51-131 22-121 (314)
123 2dkh_A 3-hydroxybenzoate hydro 61.5 3.6 0.00012 38.7 2.3 50 83-132 136-212 (639)
124 3hyw_A Sulfide-quinone reducta 61.4 0.51 1.7E-05 42.2 -3.5 37 94-130 62-108 (430)
125 3cgb_A Pyridine nucleotide-dis 60.9 5.3 0.00018 36.0 3.2 51 87-137 226-289 (480)
126 2cdu_A NADPH oxidase; flavoenz 60.1 5.2 0.00018 35.6 3.0 45 88-132 191-248 (452)
127 1hyu_A AHPF, alkyl hydroperoxi 59.9 3.6 0.00012 37.6 2.0 49 84-132 263-327 (521)
128 1nhp_A NADH peroxidase; oxidor 59.6 6.7 0.00023 34.9 3.6 45 88-132 191-247 (447)
129 2wpf_A Trypanothione reductase 58.8 6.1 0.00021 35.8 3.3 45 88-132 235-293 (495)
130 4dna_A Probable glutathione re 58.3 4.6 0.00016 36.2 2.3 47 87-133 210-270 (463)
131 2fz5_A Flavodoxin; alpha/beta 58.2 16 0.00054 26.2 5.0 55 79-133 5-60 (137)
132 3r9u_A Thioredoxin reductase; 58.0 4.6 0.00016 33.4 2.2 79 51-130 22-117 (315)
133 2bc0_A NADH oxidase; flavoprot 57.3 8.2 0.00028 34.8 3.9 45 88-132 236-292 (490)
134 3uox_A Otemo; baeyer-villiger 56.8 4.3 0.00015 37.5 1.9 54 83-136 82-152 (545)
135 1onf_A GR, grase, glutathione 56.3 11 0.00038 34.0 4.6 61 88-148 217-295 (500)
136 2xdo_A TETX2 protein; tetracyc 55.7 4.3 0.00015 35.4 1.6 47 84-132 124-183 (398)
137 5nul_A Flavodoxin; electron tr 55.7 13 0.00044 26.9 4.1 57 78-134 3-60 (138)
138 3s5w_A L-ornithine 5-monooxyge 55.5 6.4 0.00022 35.0 2.8 43 87-129 126-190 (463)
139 1pn0_A Phenol 2-monooxygenase; 54.8 65 0.0022 30.3 9.7 26 232-257 364-389 (665)
140 2vdc_G Glutamate synthase [NAD 54.4 9.6 0.00033 34.2 3.8 75 51-132 140-220 (456)
141 1q1r_A Putidaredoxin reductase 53.9 7 0.00024 34.7 2.7 50 87-136 190-256 (431)
142 2gjc_A Thiazole biosynthetic e 53.8 8.5 0.00029 33.1 3.1 29 86-114 144-174 (326)
143 1trb_A Thioredoxin reductase; 53.1 9.8 0.00034 31.6 3.4 45 88-132 184-248 (320)
144 3c96_A Flavin-containing monoo 51.8 13 0.00044 32.4 4.1 50 83-132 102-170 (410)
145 1ges_A Glutathione reductase; 51.7 6.6 0.00023 35.0 2.2 45 88-132 208-266 (450)
146 1xhc_A NADH oxidase /nitrite r 51.1 7.7 0.00026 33.6 2.5 49 88-136 183-240 (367)
147 3ntd_A FAD-dependent pyridine 50.6 9.9 0.00034 34.8 3.3 45 88-132 192-268 (565)
148 3lad_A Dihydrolipoamide dehydr 50.3 10 0.00035 33.9 3.3 46 87-132 220-281 (476)
149 2vou_A 2,6-dihydroxypyridine h 49.7 7.6 0.00026 33.8 2.3 47 84-132 95-154 (397)
150 3kd9_A Coenzyme A disulfide re 49.6 5.8 0.0002 35.3 1.5 76 51-130 21-113 (449)
151 2r48_A Phosphotransferase syst 48.7 11 0.00038 26.8 2.5 51 81-131 12-69 (106)
152 2r9z_A Glutathione amide reduc 48.7 8.2 0.00028 34.6 2.3 45 88-132 207-265 (463)
153 2kyr_A Fructose-like phosphotr 48.0 21 0.00071 25.5 3.9 52 80-131 14-72 (111)
154 1v59_A Dihydrolipoamide dehydr 48.0 11 0.00038 33.7 3.1 45 88-132 224-288 (478)
155 3f6r_A Flavodoxin; FMN binding 47.9 38 0.0013 24.6 5.7 55 78-132 6-62 (148)
156 4eqs_A Coenzyme A disulfide re 47.6 9.2 0.00031 34.0 2.5 45 88-132 188-241 (437)
157 3vrd_B FCCB subunit, flavocyto 47.4 8.1 0.00028 33.6 2.1 34 98-131 65-108 (401)
158 3urh_A Dihydrolipoyl dehydroge 47.3 12 0.00039 33.8 3.1 46 87-132 238-301 (491)
159 1ebd_A E3BD, dihydrolipoamide 47.2 14 0.00049 32.7 3.7 45 88-132 211-271 (455)
160 2r4q_A Phosphotransferase syst 47.0 11 0.00037 26.8 2.2 51 81-131 12-69 (106)
161 3hyw_A Sulfide-quinone reducta 46.1 9.1 0.00031 33.9 2.2 47 89-135 201-260 (430)
162 1xhc_A NADH oxidase /nitrite r 45.3 3.2 0.00011 36.1 -0.9 75 51-130 26-112 (367)
163 2hqm_A GR, grase, glutathione 45.3 9.2 0.00031 34.4 2.1 45 88-132 226-286 (479)
164 2zbw_A Thioredoxin reductase; 44.3 18 0.00062 30.2 3.7 52 88-139 191-261 (335)
165 1zmd_A Dihydrolipoyl dehydroge 44.2 15 0.00053 32.7 3.4 46 87-132 219-283 (474)
166 1f4p_A Flavodoxin; electron tr 44.0 38 0.0013 24.5 5.1 53 79-131 6-60 (147)
167 1y56_A Hypothetical protein PH 43.8 8.7 0.0003 34.8 1.7 41 96-136 265-319 (493)
168 3fbs_A Oxidoreductase; structu 43.5 9.8 0.00033 31.0 1.9 42 90-131 176-226 (297)
169 3h28_A Sulfide-quinone reducta 43.4 14 0.00048 32.5 3.0 46 89-134 201-259 (430)
170 3dgh_A TRXR-1, thioredoxin red 42.8 16 0.00056 32.7 3.4 44 88-131 227-289 (483)
171 4fk1_A Putative thioredoxin re 41.9 15 0.00051 30.5 2.8 77 52-131 25-117 (304)
172 2m1z_A LMO0427 protein; homolo 41.8 15 0.00052 26.0 2.4 52 80-131 11-69 (106)
173 2qae_A Lipoamide, dihydrolipoy 41.6 14 0.00049 32.9 2.8 45 88-132 215-277 (468)
174 3hly_A Flavodoxin-like domain; 39.6 27 0.00093 26.2 3.7 56 78-133 5-65 (161)
175 1dxl_A Dihydrolipoamide dehydr 39.3 14 0.00047 32.9 2.3 46 87-132 217-280 (470)
176 3uox_A Otemo; baeyer-villiger 39.2 6.4 0.00022 36.3 0.0 54 95-148 345-409 (545)
177 2r0c_A REBC; flavin adenine di 39.2 16 0.00055 33.5 2.8 47 83-132 133-197 (549)
178 3itj_A Thioredoxin reductase 1 38.8 20 0.00067 29.8 3.1 41 92-132 212-272 (338)
179 2eq6_A Pyruvate dehydrogenase 38.6 20 0.00068 32.0 3.2 45 88-132 210-272 (464)
180 3lzw_A Ferredoxin--NADP reduct 38.2 27 0.00093 28.8 3.9 43 95-137 196-257 (332)
181 3dgz_A Thioredoxin reductase 2 37.6 26 0.00088 31.4 3.8 44 88-131 225-287 (488)
182 2id1_A Hypothetical protein; a 37.6 58 0.002 23.9 5.1 46 87-135 3-49 (130)
183 3cty_A Thioredoxin reductase; 37.6 22 0.00076 29.4 3.2 40 93-132 195-253 (319)
184 1ps9_A 2,4-dienoyl-COA reducta 36.8 35 0.0012 32.1 4.7 40 88-130 425-466 (671)
185 2a8x_A Dihydrolipoyl dehydroge 36.4 17 0.00059 32.3 2.5 45 88-132 212-272 (464)
186 1lvl_A Dihydrolipoamide dehydr 36.3 18 0.00061 32.2 2.5 45 88-132 212-269 (458)
187 2cdu_A NADPH oxidase; flavoenz 36.0 9.3 0.00032 34.0 0.6 46 86-131 56-117 (452)
188 3gwf_A Cyclohexanone monooxyge 35.8 3.7 0.00013 37.9 -2.2 49 100-148 342-402 (540)
189 1w4x_A Phenylacetone monooxyge 35.4 6.4 0.00022 36.1 -0.6 48 101-148 351-409 (542)
190 3ab1_A Ferredoxin--NADP reduct 34.7 22 0.00076 30.1 2.8 49 89-137 203-270 (360)
191 3h28_A Sulfide-quinone reducta 34.5 2.5 8.5E-05 37.5 -3.5 73 55-131 26-109 (430)
192 3kd9_A Coenzyme A disulfide re 34.3 27 0.00094 30.8 3.4 45 87-132 189-245 (449)
193 3dk9_A Grase, GR, glutathione 33.7 22 0.00076 31.7 2.7 45 88-132 228-294 (478)
194 4b1b_A TRXR, thioredoxin reduc 33.0 28 0.00096 32.0 3.3 44 88-131 263-319 (542)
195 1b37_A Protein (polyamine oxid 32.9 7.3 0.00025 34.8 -0.7 43 89-131 207-270 (472)
196 2o5a_A BH1328 protein; BHR21, 32.7 57 0.0019 23.7 4.3 46 87-135 3-49 (125)
197 1ebd_A E3BD, dihydrolipoamide 32.6 38 0.0013 29.9 4.1 40 92-131 95-145 (455)
198 1ojt_A Surface protein; redox- 31.5 18 0.00062 32.4 1.7 45 88-132 226-287 (482)
199 1gte_A Dihydropyrimidine dehyd 31.4 51 0.0017 32.8 5.1 44 87-130 237-286 (1025)
200 4eqs_A Coenzyme A disulfide re 31.3 23 0.0008 31.3 2.4 35 98-132 67-117 (437)
201 3dk9_A Grase, GR, glutathione 30.9 35 0.0012 30.3 3.6 39 92-130 112-159 (478)
202 3ups_A Iojap-like protein; PSI 30.8 86 0.0029 23.1 5.1 50 83-135 15-65 (136)
203 4ap3_A Steroid monooxygenase; 30.8 4.5 0.00015 37.4 -2.5 48 100-147 355-413 (549)
204 3fni_A Putative diflavin flavo 30.4 53 0.0018 24.5 4.0 57 77-133 8-70 (159)
205 1q1r_A Putidaredoxin reductase 30.0 23 0.00078 31.2 2.1 36 96-131 68-114 (431)
206 3ef6_A Toluene 1,2-dioxygenase 30.0 24 0.00082 30.8 2.2 36 96-131 65-111 (410)
207 3s5w_A L-ornithine 5-monooxyge 29.8 28 0.00097 30.7 2.7 32 101-132 329-378 (463)
208 3k30_A Histamine dehydrogenase 29.6 25 0.00085 33.3 2.4 50 83-132 438-489 (690)
209 1ykg_A SIR-FP, sulfite reducta 29.5 56 0.0019 24.5 4.0 54 77-130 13-67 (167)
210 4dgk_A Phytoene dehydrogenase; 28.9 43 0.0015 29.7 3.8 32 227-258 459-492 (501)
211 1cjc_A Protein (adrenodoxin re 28.9 32 0.0011 30.7 2.9 45 87-131 58-106 (460)
212 1lqt_A FPRA; NADP+ derivative, 28.8 23 0.0008 31.6 2.0 46 86-131 59-108 (456)
213 1v59_A Dihydrolipoamide dehydr 28.6 33 0.0011 30.5 3.0 40 93-132 101-158 (478)
214 3oc4_A Oxidoreductase, pyridin 28.3 16 0.00056 32.3 0.9 77 51-131 20-115 (452)
215 2ark_A Flavodoxin; FMN, struct 28.1 48 0.0017 25.3 3.5 53 82-134 13-67 (188)
216 2v3a_A Rubredoxin reductase; a 28.1 31 0.0011 29.6 2.6 38 94-131 66-113 (384)
217 1n4w_A CHOD, cholesterol oxida 28.0 15 0.0005 33.4 0.5 39 92-130 225-287 (504)
218 2r9z_A Glutathione amide reduc 27.7 32 0.0011 30.6 2.7 38 94-131 98-142 (463)
219 3g5s_A Methylenetetrahydrofola 27.7 49 0.0017 29.6 3.8 43 84-131 94-137 (443)
220 4dik_A Flavoprotein; TM0755, e 27.3 1.2E+02 0.0042 26.6 6.4 59 77-135 269-335 (410)
221 3qfa_A Thioredoxin reductase 1 27.0 47 0.0016 30.1 3.7 44 88-131 250-315 (519)
222 4b63_A L-ornithine N5 monooxyg 26.8 29 0.00098 31.4 2.2 41 89-129 146-212 (501)
223 1nhp_A NADH peroxidase; oxidor 25.8 19 0.00065 31.9 0.8 38 94-131 62-115 (447)
224 2eq6_A Pyruvate dehydrogenase 25.6 41 0.0014 29.9 3.0 39 94-132 99-144 (464)
225 3lxd_A FAD-dependent pyridine 25.5 9.9 0.00034 33.3 -1.1 79 50-131 26-119 (415)
226 1xdi_A RV3303C-LPDA; reductase 25.3 53 0.0018 29.4 3.7 40 92-131 99-156 (499)
227 2a8x_A Dihydrolipoyl dehydroge 25.2 40 0.0014 29.9 2.8 41 92-132 95-147 (464)
228 1dxl_A Dihydrolipoamide dehydr 25.2 44 0.0015 29.6 3.1 39 94-132 102-152 (470)
229 1lvl_A Dihydrolipoamide dehydr 25.2 48 0.0016 29.3 3.4 38 94-131 102-146 (458)
230 2hqm_A GR, grase, glutathione 25.1 52 0.0018 29.3 3.6 39 93-131 110-160 (479)
231 1onf_A GR, grase, glutathione 25.0 63 0.0021 29.0 4.2 39 93-131 94-153 (500)
232 4gde_A UDP-galactopyranose mut 24.5 11 0.00036 33.8 -1.2 43 88-130 222-275 (513)
233 1o94_A Tmadh, trimethylamine d 24.3 51 0.0017 31.4 3.5 23 92-114 575-598 (729)
234 1ojt_A Surface protein; redox- 24.2 44 0.0015 29.8 2.9 40 93-132 100-161 (482)
235 3urh_A Dihydrolipoyl dehydroge 24.0 73 0.0025 28.4 4.4 37 94-130 121-169 (491)
236 3lad_A Dihydrolipoamide dehydr 24.0 58 0.002 28.8 3.7 37 95-131 106-154 (476)
237 1ps9_A 2,4-dienoyl-COA reducta 23.8 53 0.0018 30.8 3.5 41 92-132 577-629 (671)
238 1s3e_A Amine oxidase [flavin-c 23.7 28 0.00094 31.4 1.5 69 190-259 356-456 (520)
239 3sx6_A Sulfide-quinone reducta 23.1 56 0.0019 28.6 3.4 42 90-131 210-269 (437)
240 3fg2_P Putative rubredoxin red 23.0 37 0.0013 29.4 2.1 77 51-130 19-109 (404)
241 1ges_A Glutathione reductase; 23.0 46 0.0016 29.4 2.8 36 95-130 100-142 (450)
242 1bvy_F Protein (cytochrome P45 22.3 1.4E+02 0.0046 23.1 5.1 59 76-134 24-82 (191)
243 3dgz_A Thioredoxin reductase 2 22.0 52 0.0018 29.4 2.9 35 96-130 112-158 (488)
244 1coy_A Cholesterol oxidase; ox 22.0 18 0.00063 32.8 -0.1 43 92-134 230-297 (507)
245 2a5l_A Trp repressor binding p 21.8 1.1E+02 0.0038 23.1 4.5 52 83-134 15-86 (200)
246 3kkj_A Amine oxidase, flavin-c 20.9 70 0.0024 24.5 3.3 31 228-259 297-329 (336)
247 4gcm_A TRXR, thioredoxin reduc 20.8 54 0.0019 26.9 2.7 80 51-132 24-117 (312)
248 2hna_A Protein MIOC, flavodoxi 20.5 1.4E+02 0.0046 21.5 4.6 56 78-134 6-62 (147)
249 3l8k_A Dihydrolipoyl dehydroge 20.3 33 0.0011 30.5 1.2 39 92-130 93-143 (466)
No 1
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=100.00 E-value=1.3e-34 Score=257.94 Aligned_cols=232 Identities=37% Similarity=0.597 Sum_probs=196.2
Q ss_pred ceEEEEEeeEeccCC--chhHhhhCCCcEECChhhhhcCCCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeC
Q psy5261 34 TGKAMISTYQTSLLK--NASIENLVPVYRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVS 111 (267)
Q Consensus 34 ~g~~~~~g~~~~~~~--~~~~~~~g~~~~~l~~~el~~~P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~ 111 (267)
+++...+|+.++.++ ..+|++.+.+++.++++|+...| .+..|++++++++||.+++.+|++.++++|++|++++|+
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~p-~~~~~~~~~~~~v~p~~~~~~l~~~~~~~Gv~i~~~~V~ 165 (351)
T 3g3e_A 87 LGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFP-DYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVE 165 (351)
T ss_dssp HTEEEEEEEEEESSCCCCCGGGGTSEEEEECCHHHHTTCT-TCCEEEEEEEEEECHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred ccEEEEEEEEEecCCccccCHHHhCCCceECCHHHhccCC-CCceEEEecceEEcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 567778888666554 25778889999999999995338 777888777899999999999999999999999888888
Q ss_pred Ccccc-ccCCCEEEEccCcCchhhcCCCCceeecceEEEEECCCcceEEE-e------CCeEEEEecCCCeEEEcceeec
Q psy5261 112 SFSGL-ESEFDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAPWLSHFYY-L------DYDVYVIPHSNGAVTLGGCRHY 183 (267)
Q Consensus 112 ~l~~~-~~~ad~VV~aaG~~s~~l~~~~~l~p~rg~~~~~~~p~~~~~v~-~------~~~~y~~p~~~g~l~lGg~~~~ 183 (267)
+++.. .++||.||+|+|.|+..|+++.|+.|+|||++.+++|.++++++ . +...|++|+.+ ++++|++.+.
T Consensus 166 ~i~~~~~~~a~~VV~A~G~~s~~l~~~~~l~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~-~~~iGg~~~~ 244 (351)
T 3g3e_A 166 SFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQ-TVTLGGIFQL 244 (351)
T ss_dssp CHHHHHHTTCSEEEECCGGGGGGTSCCTTCEEEEEEEEEEECTTCCSEEEECCTTTCTTCSCEEEECSS-CEEEECCCEE
T ss_pred CHHHhhcCCCCEEEECCCcChHhhcCCCceeecCCcEEEEeCCCcceEEEeccccCCCCceeEEEeCCC-cEEEeeeeec
Confidence 88654 37899999999999999998899999999999999876555554 1 13579999987 8999999988
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC----------------eEEEeCCCchhhhccHHHHH
Q psy5261 184 DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL----------------VIHNYGHGGYGVTTAPGTSR 247 (267)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd----------------l~~~~G~gg~G~t~a~~~a~ 247 (267)
.+++..++++..+.+++.+.++||.+.+.++.+.|+|+||++|| +|+++||+|+||++||++|+
T Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~t~D~p~~~~~ig~~~~~~~~~~~~G~~g~G~~~ap~~g~ 324 (351)
T 3g3e_A 245 GNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCAL 324 (351)
T ss_dssp TCCCCSCCHHHHHHHHHHHHHHCGGGGGCEEEEEEEEEEEECSSCEEEEEEECCSSSCEEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCccCCcEeeeeEeeCCCCCCccceeeeccCCCCCCeEEEEeCCCcchHhhhHHHHH
Confidence 88888899999999999999999999888999999999999887 78999999999999999999
Q ss_pred HHHHHHHhhhCC---CCccCCCC
Q psy5261 248 YAVQLVKQALDP---TSSLKSKL 267 (267)
Q Consensus 248 ~la~li~~~l~~---~~~~~~~~ 267 (267)
.+|++|.+.+++ ++.++|||
T Consensus 325 ~la~li~~~~~~~~~~~~~~~~~ 347 (351)
T 3g3e_A 325 EAAKLFGRILEEKKLSRMPPSHL 347 (351)
T ss_dssp HHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHhcccccCCcccc
Confidence 999999998874 45566776
No 2
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=99.97 E-value=3.7e-29 Score=223.68 Aligned_cols=225 Identities=26% Similarity=0.416 Sum_probs=184.5
Q ss_pred cCCCC-ceEEEEEeeEeccCC----chhHhhhCCCcEECChhhhhcCCCCceeEEEeeeeeeehHHHHHHHHHHHHhCCc
Q psy5261 29 SADGS-TGKAMISTYQTSLLK----NASIENLVPVYRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGG 103 (267)
Q Consensus 29 ~~~~~-~g~~~~~g~~~~~~~----~~~~~~~g~~~~~l~~~el~~~P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~ 103 (267)
++.++ .|+....++.++.++ ..++++.+.+++.++++|+ | ++..|+.+.++++||.+++.+|++.++++|+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~---p-~~~~g~~~~~~~v~p~~~~~~l~~~~~~~G~ 157 (363)
T 1c0p_A 82 ELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPLPSSEC---P-PGAIGVTYDTLSVHAPKYCQYLARELQKLGA 157 (363)
T ss_dssp HHTTTTSSEEEEEEEEEESSGGGGGGGTTTTTSTTCEECCGGGS---S-TTCEEEEEEEEECCHHHHHHHHHHHHHHTTC
T ss_pred HhCcccCCeEEECCEEEEecCccchhHHHHHhCCCcEECCHHHC---C-CceEEEEEecceecHHHHHHHHHHHHHHCCC
Confidence 44455 788765555555532 1355778889999999876 5 5556776756999999999999999999999
Q ss_pred EEEEEeeCCcccc-ccCCCEEEEccCcCchhhcC--CCCceeecceEEEEECCC-cceE-EE-eCCeEEEEecCCCeEEE
Q psy5261 104 KFRRGTVSSFSGL-ESEFDFVFNCAGLGAQALCR--DRKLTPIRGQVIKVWAPW-LSHF-YY-LDYDVYVIPHSNGAVTL 177 (267)
Q Consensus 104 ~~~~~~V~~l~~~-~~~ad~VV~aaG~~s~~l~~--~~~l~p~rg~~~~~~~p~-~~~~-v~-~~~~~y~~p~~~g~l~l 177 (267)
+|++++|++++.. . +||.||+|+|.|+..|.. +.|+.|+|||++.++++. .... +. +....|++|+.+|++++
T Consensus 158 ~i~~~~v~~l~~~~~-~a~~VV~A~G~~s~~l~~~~~~~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~i 236 (363)
T 1c0p_A 158 TFERRTVTSLEQAFD-GADLVVNATGLGAKSIAGIDDQAAEPIRGQTVLVKSPCKRCTMDSSDPASPAYIIPRPGGEVIC 236 (363)
T ss_dssp EEEECCCSBGGGTCS-SCSEEEECCGGGGGTSBTTCCTTEEEEEEEEEEEECCCCCCEEECSCTTCCEEEEEETTTEEEE
T ss_pred EEEEEEcccHhhcCc-CCCEEEECCCcchhhccCcccCCccccCCeEEEEeCCcccceEeeccCCCcEEEEEcCCCEEEE
Confidence 9988888888642 3 899999999999999886 789999999999998753 2221 11 22448999998889999
Q ss_pred cceeecCCCCCCCCHHHHHHHHHHHHhhCCCC------CCCCceeeeccccCCCCC------------------------
Q psy5261 178 GGCRHYDSYSRDISRHDTASILERCYSLLPRL------EEAPVLYEWCGLRPHRSL------------------------ 227 (267)
Q Consensus 178 Gg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l------~~~~~~~~w~G~rp~~pd------------------------ 227 (267)
|++.+..+++..++++..+.+++.+.++||.+ .+.++.+.|+|+||++||
T Consensus 237 G~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~i~~~w~G~rp~t~d~~piig~~~~~~~~~~~~~~d~~~ 316 (363)
T 1c0p_A 237 GGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPARRGGPRVEAERIVLPLDRTKSPLSLGR 316 (363)
T ss_dssp ECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGSSSSSGGGCEEEEEEEEEEEEETTSCEEEEEEEEESCCTTTCTTCSSC
T ss_pred EeeeccCCCCCCCCHHHHHHHHHHHHHhCccccCCcccccceEeeceEEECCCCCCCceeEEEecccccccccCcccccc
Confidence 99998888888899999999999999999998 446789999999998765
Q ss_pred ------------eEEEeCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 228 ------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 228 ------------l~~~~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
+|+++||+|+||++||++|+.+|++|.+.+.
T Consensus 317 ~~g~~p~~~~~~~~~a~G~~g~G~~~a~~~g~~~a~li~~~l~ 359 (363)
T 1c0p_A 317 GSARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDVAQLVDEAFQ 359 (363)
T ss_dssp TTCCCSCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccceEEEecCCCCcchheeccHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998874
No 3
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.96 E-value=2.6e-28 Score=218.51 Aligned_cols=218 Identities=16% Similarity=0.177 Sum_probs=174.3
Q ss_pred EEEEee-EeccCCc--------hhHhhhCCCcEECChhhhhcC-CC----CceeEEEeee-eeeehHHHHHHHHHHHHhC
Q psy5261 37 AMISTY-QTSLLKN--------ASIENLVPVYRDAQPDELVVG-NK----TYKYGSYSET-LVIENSDFLPWAMKRVSKQ 101 (267)
Q Consensus 37 ~~~~g~-~~~~~~~--------~~~~~~g~~~~~l~~~el~~~-P~----~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~ 101 (267)
....|. .++.+.. ..+++.+.+++.++++++.++ |. .+..+++++. +++||.+++.+|++.++++
T Consensus 88 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 167 (381)
T 3nyc_A 88 LSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLRGIRRN 167 (381)
T ss_dssp EEECCEEEECSSCCHHHHHHHHHHHHHHCTTCEEECHHHHHHHSTTBCGGGCCCEEEETTCEEECHHHHHHHHHHHHHHT
T ss_pred ccccceEEEechHHHHHHHHHHHHHHHcCCCcEEeCHHHHHHhCCCcccccceEEEEcCCCceECHHHHHHHHHHHHHHC
Confidence 455676 5544431 244678999999999999987 71 1346666665 9999999999999999999
Q ss_pred CcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCchhhcC----C-CCceeecceEEEEECCC-c--ce--EE
Q psy5261 102 GGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQALCR----D-RKLTPIRGQVIKVWAPW-L--SH--FY 159 (267)
Q Consensus 102 G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~~l~~----~-~~l~p~rg~~~~~~~p~-~--~~--~v 159 (267)
|++|++ ++|++|+.. .++||+||+|+|.|+..|.+ + +|+.|+|||++.++.|. . .. .+
T Consensus 168 Gv~i~~~~~V~~i~~~~~~~~V~t~~g~i~a~~VV~A~G~~s~~l~~~~g~~~~~~~p~rg~~~~~~~~~~~~~~~~p~~ 247 (381)
T 3nyc_A 168 QGQVLCNHEALEIRRVDGAWEVRCDAGSYRAAVLVNAAGAWCDAIAGLAGVRPLGLQPKRRSAFIFAPPPGIDCHDWPML 247 (381)
T ss_dssp TCEEESSCCCCEEEEETTEEEEECSSEEEEESEEEECCGGGHHHHHHHHTCCCCCCEEEEEEEEEECCCTTCCCTTCCEE
T ss_pred CCEEEcCCEEEEEEEeCCeEEEEeCCCEEEcCEEEECCChhHHHHHHHhCCCCCceeeeEEEEEEECCCcCCCcCccceE
Confidence 999997 688888542 26899999999999988864 2 68999999999988643 1 11 23
Q ss_pred E-eCCeEEEEecCCCeEEEcceeec--CCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC---------
Q psy5261 160 Y-LDYDVYVIPHSNGAVTLGGCRHY--DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL--------- 227 (267)
Q Consensus 160 ~-~~~~~y~~p~~~g~l~lGg~~~~--~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd--------- 227 (267)
. .+...|++|.. |++++|++.+. ..++..+++..++.+++.+.+ +|.+...++.+.|+|+||++||
T Consensus 248 ~~~~~~~y~~p~~-g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~w~G~r~~t~D~~p~ig~~~ 325 (381)
T 3nyc_A 248 VSLDESFYLKPDA-GMLLGSPANADPVEAHDVQPEQLDIATGMYLIEE-ATTLTIRRPEHTWAGLRSFVADGDLVAGYAA 325 (381)
T ss_dssp EETTSSCEEEEET-TEEEEECCCCEECCSSCCCCCHHHHHHHHHHHHH-HBSCCCCCCSEEEEEEEEECTTSCCEEEECT
T ss_pred EeCCCCEEEEeCC-CcEEEeCCcCCCCCcccCCCChHHHHHHHHHHHh-cCCCcccceeeeeEEccccCCCCCceecCCC
Confidence 3 23567999987 79999998765 235566777788888888866 5788888899999999999998
Q ss_pred ----eEEEeCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 228 ----VIHNYGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 228 ----l~~~~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
+|+++||||+||++||++|+++|++|.+.
T Consensus 326 ~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~g~ 358 (381)
T 3nyc_A 326 NAEGFFWVAAQGGYGIQTSAAMGEASAALIRHQ 358 (381)
T ss_dssp TSTTEEEEECCTTCTTTTHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEcCCChhHhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999875
No 4
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.95 E-value=2e-27 Score=213.45 Aligned_cols=206 Identities=14% Similarity=0.103 Sum_probs=171.3
Q ss_pred hHhhhCCCcEECChhhhhcC-C----CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-N----KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P----~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------- 116 (267)
.+++.|.+++.++++++.++ | ..+..|++++. +++||.+++.+|.+.++++|++|+. ++|++++..
T Consensus 106 ~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv 185 (382)
T 1y56_B 106 IQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGV 185 (382)
T ss_dssp HHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEE
T ss_pred HHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEE
Confidence 34677999999999999887 7 13445665554 9999999999999999999999998 578777531
Q ss_pred -----ccCCCEEEEccCcCchhhcC----C--CCceeecceEEEEECC--Ccc-eEEEeC--CeEEEEecCCCeEEEcc-
Q psy5261 117 -----ESEFDFVFNCAGLGAQALCR----D--RKLTPIRGQVIKVWAP--WLS-HFYYLD--YDVYVIPHSNGAVTLGG- 179 (267)
Q Consensus 117 -----~~~ad~VV~aaG~~s~~l~~----~--~~l~p~rg~~~~~~~p--~~~-~~v~~~--~~~y~~p~~~g~l~lGg- 179 (267)
.++||.||+|+|.|+..|.+ + +|+.|.|||++.++++ ... +.+++. ...|++|..+| +++|+
T Consensus 186 ~~~~g~i~a~~VV~A~G~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g-~~iG~~ 264 (382)
T 1y56_B 186 KTNKGIIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQPIKRGTINPMVISFKYGHAYLTQTFHG-GIIGGI 264 (382)
T ss_dssp EETTEEEECSEEEECCGGGHHHHHHHHTCCSCCCCEEEEEEEEEECCCSTTSSCSEEEESTTTTEEEECCSSS-CCEEEC
T ss_pred EECCcEEECCEEEECcchhHHHHHHHcCCCcCcCCCeeEeEEEEEccCCcccCCCeEEecCCCeEEEEEeCCe-EEEecC
Confidence 25799999999999987653 4 8999999999999863 233 445543 47899999887 88994
Q ss_pred -eeecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------------eEEEeCCCchhhhccHHH
Q psy5261 180 -CRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-------------VIHNYGHGGYGVTTAPGT 245 (267)
Q Consensus 180 -~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~~~G~gg~G~t~a~~~ 245 (267)
+.+..+++..++.+..+.+++.+.++||.+.+.++.+.|+|+||++|| +|+++||+|+||++||++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~g~G~~~a~~~ 344 (382)
T 1y56_B 265 GYEIGPTYDLTPTYEFLREVSYYFTKIIPALKNLLILRTWAGYYAKTPDSNPAIGRIEELNDYYIAAGFSGHGFMMAPAV 344 (382)
T ss_dssp SCCBSSCCCCCCCHHHHHHHHHHHHHHCGGGGGSEEEEEEEEEEEECTTSCCEEEEESSSBTEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcCCCCceEEEEeccccCCCCCcEeccCCCCCCEEEEEecCcchHhhhHHH
Confidence 345556677788999999999999999999888899999999999998 899999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy5261 246 SRYAVQLVKQAL 257 (267)
Q Consensus 246 a~~la~li~~~l 257 (267)
|+.+|++|.+.-
T Consensus 345 g~~la~~i~~~~ 356 (382)
T 1y56_B 345 GEMVAELITKGK 356 (382)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHhCCC
Confidence 999999999864
No 5
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.94 E-value=1.3e-26 Score=208.22 Aligned_cols=206 Identities=15% Similarity=0.081 Sum_probs=168.2
Q ss_pred hHhhhCCCcEECChhhhhcC-C----CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-N----KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P----~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------- 116 (267)
.++..|.+++.++++++.++ | .....+++.+. +++||.+++.+|.+.++++|++|+. ++|++++..
T Consensus 107 ~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~ 186 (389)
T 2gf3_A 107 AAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIE 186 (389)
T ss_dssp HHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEE
T ss_pred HHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEE
Confidence 44667899999999999877 7 12345665554 9999999999999999999999998 688877532
Q ss_pred ----ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEECCC--c----ceE-EE-e-C-CeEEEEecCCC-eEEE
Q psy5261 117 ----ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAPW--L----SHF-YY-L-D-YDVYVIPHSNG-AVTL 177 (267)
Q Consensus 117 ----~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p~--~----~~~-v~-~-~-~~~y~~p~~~g-~l~l 177 (267)
.++||.||+|+|.|+..+.+ ++|+.|.|||++.++++. . ..+ +. . . ...|++|..+| ++++
T Consensus 187 ~~~g~~~a~~vV~A~G~~~~~l~~~~g~~~pl~~~rg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~g~~~~i 266 (389)
T 2gf3_A 187 TANGSYTADKLIVSMGAWNSKLLSKLNLDIPLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKL 266 (389)
T ss_dssp ETTEEEEEEEEEECCGGGHHHHGGGGTEECCCEEEEEEEEEECCCHHHHBGGGTCCEEEEEETTEEEEEECBSTTCCEEE
T ss_pred eCCCEEEeCEEEEecCccHHHHhhhhccCCceEEEEEEEEEEecCcccccccccCCEEEEeCCCCcEEEcCCCCCCcEEE
Confidence 26899999999999998875 389999999999998642 1 112 22 2 1 26799999887 9999
Q ss_pred ccee-----ecCCCCCCC--CHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------------eEEEeCCCch
Q psy5261 178 GGCR-----HYDSYSRDI--SRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-------------VIHNYGHGGY 237 (267)
Q Consensus 178 Gg~~-----~~~~~~~~~--~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~~~G~gg~ 237 (267)
|++. +..+.+..+ +++..+.+++.+.++||.+.. ++.+.|+|+||++|| +|+++||+|+
T Consensus 267 G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~-~~~~~w~g~r~~t~D~~p~ig~~~~~~~l~~a~G~~g~ 345 (389)
T 2gf3_A 267 GYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYMPGANG-ELKRGAVCMYTKTLDEHFIIDLHPEHSNVVIAAGFSGH 345 (389)
T ss_dssp EESSCCEECCTTTCCCCTTSSHHHHHHHHHHHHHHCGGGCS-CEEEEEEEEEEECTTSCCEEEEETTEEEEEEEECCTTC
T ss_pred EEcCCCCccCcccccCccCCCHHHHHHHHHHHHHhCCCCCC-CceEEEEEEeccCCCCCeEEccCCCCCCEEEEECCccc
Confidence 9764 233345556 888899999999999999877 788999999999998 8999999999
Q ss_pred hhhccHHHHHHHHHHHHhhh
Q psy5261 238 GVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 238 G~t~a~~~a~~la~li~~~l 257 (267)
||+++|++|+++|++|.+.-
T Consensus 346 G~~~ap~~g~~la~~i~~~~ 365 (389)
T 2gf3_A 346 GFKFSSGVGEVLSQLALTGK 365 (389)
T ss_dssp CGGGHHHHHHHHHHHHHHSC
T ss_pred cccccHHHHHHHHHHHcCCC
Confidence 99999999999999999864
No 6
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.94 E-value=3.8e-27 Score=209.60 Aligned_cols=203 Identities=13% Similarity=0.115 Sum_probs=167.0
Q ss_pred HhhhCCC-cEECChhhhhcC-CC-CceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------
Q psy5261 52 IENLVPV-YRDAQPDELVVG-NK-TYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------- 116 (267)
Q Consensus 52 ~~~~g~~-~~~l~~~el~~~-P~-~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------- 116 (267)
.++.|.+ ++.++++++.++ |. ....+++++. +.+||..++.+|++.++++|++|+. ++|++++..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~ 189 (369)
T 3dme_A 110 AGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFG 189 (369)
T ss_dssp HHHTTCCCCEEEEHHHHHHHCTTCCCSEEEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEEC
T ss_pred HHHcCCCceeecCHHHHHHhCCCceeeeeeECCCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEEC
Confidence 4667887 999999999988 72 2345565554 9999999999999999999999997 678776431
Q ss_pred -----ccCCCEEEEccCcCchhhcC---------CCCceeecceEEEEECC-CcceEEE-----eCCeEEEEecCCCeEE
Q psy5261 117 -----ESEFDFVFNCAGLGAQALCR---------DRKLTPIRGQVIKVWAP-WLSHFYY-----LDYDVYVIPHSNGAVT 176 (267)
Q Consensus 117 -----~~~ad~VV~aaG~~s~~l~~---------~~~l~p~rg~~~~~~~p-~~~~~v~-----~~~~~y~~p~~~g~l~ 176 (267)
.++||.||+|+|.|+..|++ ..++.|.|||++.++.+ ...+.++ +....++.++.+|+++
T Consensus 190 ~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~~~~~~~i~p~rG~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 269 (369)
T 3dme_A 190 GAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGRAPFSRLIYPVPQHAGLGVHLTLDLGGQAK 269 (369)
T ss_dssp TTSCEEEEEEEEEECCGGGHHHHHHTEETSCGGGSCCCEEEEEEEEECSSSCSCSSEEEECTTCSSCCCCEEECTTSCEE
T ss_pred CCceeEEEeCEEEECCCcchHHHHHHhcCCCccccceeeecceEEEEECCCCccCceeecCCCCCCceEEEeCccCCcEE
Confidence 25799999999999988753 24799999999998763 2333333 1134567777788999
Q ss_pred Ecceeec-CCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCC-----C---------------eEEEeCCC
Q psy5261 177 LGGCRHY-DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRS-----L---------------VIHNYGHG 235 (267)
Q Consensus 177 lGg~~~~-~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~p-----d---------------l~~~~G~g 235 (267)
+|++.+. .+++..++++..+.+++.+.++||.+.+.++.+.|+|+||+++ | +|+++||+
T Consensus 270 iG~t~e~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~~~~~~~~d~~p~i~g~~~~~~~~l~~~~G~~ 349 (369)
T 3dme_A 270 FGPDTEWIATEDYTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIE 349 (369)
T ss_dssp ECCCCEEESSCCCCCCGGGGGGHHHHHHTTCTTCCTTCCEEEEEEEEEESSCTTSCCCCCEEECHHHHCCTTEEEEECCC
T ss_pred ECCCcccccccccccCHHHHHHHHHHHHHHCCCCChhhceecceeccccccCCCCCcCCeEEecccccCCCCEEEEeCCC
Confidence 9999887 6778889999999999999999999999999999999999863 2 89999999
Q ss_pred chhhhccHHHHHHHHHHHH
Q psy5261 236 GYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 236 g~G~t~a~~~a~~la~li~ 254 (267)
|+|||+||++|+.++++|.
T Consensus 350 ~~G~t~ap~~a~~~a~~i~ 368 (369)
T 3dme_A 350 SPGLTASLAIAEETLARLA 368 (369)
T ss_dssp TTHHHHHHHHHHHHHHHHC
T ss_pred CchHhccHHHHHHHHHHhh
Confidence 9999999999999999984
No 7
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.94 E-value=9e-27 Score=208.29 Aligned_cols=219 Identities=14% Similarity=0.080 Sum_probs=171.0
Q ss_pred EEEEee-EeccCCc-------hhHhhhCCCcEECChhhhhcC-CC----CceeEEEeee-eeeehHHHHHHHHHHHHhCC
Q psy5261 37 AMISTY-QTSLLKN-------ASIENLVPVYRDAQPDELVVG-NK----TYKYGSYSET-LVIENSDFLPWAMKRVSKQG 102 (267)
Q Consensus 37 ~~~~g~-~~~~~~~-------~~~~~~g~~~~~l~~~el~~~-P~----~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G 102 (267)
....|. .++.++. ..+++.|.+++.++++++.++ |. ....|++++. +++||.+++.+|.+.+++.|
T Consensus 84 ~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~G 163 (372)
T 2uzz_A 84 FVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAG 163 (372)
T ss_dssp EECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHHHHHHHHHTT
T ss_pred eeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHHHHHHHHHHCC
Confidence 345665 4444431 234678999999999999877 71 2345666655 99999999999999999999
Q ss_pred cEEEE-EeeCCcccc-----------ccCCCEEEEccCcCchhhcCCCCceeecceEEEEECCC-------cceEEEe--
Q psy5261 103 GKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAPW-------LSHFYYL-- 161 (267)
Q Consensus 103 ~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~~l~~~~~l~p~rg~~~~~~~p~-------~~~~v~~-- 161 (267)
++|+. ++|++++.. .++||.||+|+|.|++.|++++|+.|+|||++.++.+. .+..+.+
T Consensus 164 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~a~~vV~a~G~~s~~l~~~l~~~p~rg~~~~~~~~~~~~~~~~~p~~~~~~~ 243 (372)
T 2uzz_A 164 CAQLFNCPVTAIRHDDDGVTIETADGEYQAKKAIVCAGTWVKDLLPELPVQPVRKVFAWYQADGRYSVKNKFPAFTGELP 243 (372)
T ss_dssp CEEECSCCEEEEEECSSSEEEEESSCEEEEEEEEECCGGGGGGTSTTCCCEEEECCEEEECCCGGGSTTTTCCEEEEECT
T ss_pred CEEEcCCEEEEEEEcCCEEEEEECCCeEEcCEEEEcCCccHHhhccccCceEEEEEEEEEEeccccCccccCCEEEEecC
Confidence 99998 688887532 25799999999999999998899999999999887642 1212222
Q ss_pred C-CeEEEEecCCCeEEEcceee---c----CCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC------
Q psy5261 162 D-YDVYVIPHSNGAVTLGGCRH---Y----DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL------ 227 (267)
Q Consensus 162 ~-~~~y~~p~~~g~l~lGg~~~---~----~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd------ 227 (267)
+ ...|++|+.+|++++|++.. . ...+...+++..+.+++.+.++||.+. ++...|+|+||++||
T Consensus 244 ~~~~~y~~p~~~~~~~iG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~--~~~~~~~g~r~~t~d~~p~ig 321 (372)
T 2uzz_A 244 NGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVVSDGSEAFPFLRNVLPGIG--CCLYGAACTYDNSPDEDFIID 321 (372)
T ss_dssp TCCEEEEECCSSSCEEEEESSCCEECCSGGGCCCTTTSTTGGGSSHHHHHHHSCSCC--CEEEECCCEEEECTTSCCCEE
T ss_pred CCCeEEecCCCCCeEEEEecCCCCccCChhhccCCCCCHHHHHHHHHHHHHHCCCCC--ccceeeEEeeccCCCCCeEEe
Confidence 1 35788898888999998641 1 111223345677789999999999987 678899999999998
Q ss_pred -------eEEEeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 228 -------VIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 228 -------l~~~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
+|+++||+|+||+++|++|+++|++|.+.-
T Consensus 322 ~~~~~~~l~~~~G~~g~G~~~ap~~g~~la~~i~~~~ 358 (372)
T 2uzz_A 322 TLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKK 358 (372)
T ss_dssp EETTEEEEEEECCCCSCCGGGHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCEEEEeCCCccchhccHHHHHHHHHHHhCCC
Confidence 999999999999999999999999998764
No 8
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=99.94 E-value=2.9e-26 Score=210.47 Aligned_cols=194 Identities=18% Similarity=0.155 Sum_probs=161.9
Q ss_pred ChhhhhcC-CCCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc---------------c--------
Q psy5261 63 QPDELVVG-NKTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG---------------L-------- 116 (267)
Q Consensus 63 ~~~el~~~-P~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---------------~-------- 116 (267)
+++|+.++ ...+..+++++. +++||.+++.+|++.++++|++|++ ++|++++. .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~ 233 (448)
T 3axb_A 154 DGEEAEVLGVGDVEGAVLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAV 233 (448)
T ss_dssp TSSHHHHHTCCCCCEEEEESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEE
T ss_pred CHHHHHhccCCCceEEEEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEE
Confidence 88888765 225566766654 9999999999999999999999998 68877743 1
Q ss_pred ----cc--CCCEEEEccCcCchhhcC----CCCceeecceEEEEECCC--cc--------------eEEEeCCeEEEEec
Q psy5261 117 ----ES--EFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAPW--LS--------------HFYYLDYDVYVIPH 170 (267)
Q Consensus 117 ----~~--~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p~--~~--------------~~v~~~~~~y~~p~ 170 (267)
.+ +||.||+|+|.|+..|.+ ++|+.|+|||++.++++. +. ..+.+....|++|.
T Consensus 234 t~~g~i~~~Ad~VV~AtG~~s~~l~~~~g~~~~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~y~~p~ 313 (448)
T 3axb_A 234 LSDGTRVEVGEKLVVAAGVWSNRLLNPLGIDTFSRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILPKRVLVRPA 313 (448)
T ss_dssp ETTSCEEEEEEEEEECCGGGHHHHHGGGTCCCSEEEEEEEEEEEECCSHHHHHHHHHCCTTSSSSCCEEEETTTEEEEEE
T ss_pred eCCCEEeecCCEEEECCCcCHHHHHHHcCCCCcccccceEEEEeCCcccccccccccccccccCCCceEEcCCceEEeec
Confidence 25 899999999999988764 579999999999998743 22 12334467899999
Q ss_pred CC-CeEEEcceeec---CCCCC--CCCHHH-HHHHHHHHHhhCCCCCCCCceeeeccccCC-CCC-----------eEEE
Q psy5261 171 SN-GAVTLGGCRHY---DSYSR--DISRHD-TASILERCYSLLPRLEEAPVLYEWCGLRPH-RSL-----------VIHN 231 (267)
Q Consensus 171 ~~-g~l~lGg~~~~---~~~~~--~~~~~~-~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~-~pd-----------l~~~ 231 (267)
.+ |++++|++.+. .+++. .++.+. .+.+++.+.++||.+.+.++.+.|+|+||+ ++| +|++
T Consensus 314 ~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~~t~d~~p~ig~~~~~l~~a 393 (448)
T 3axb_A 314 PREGSFWVQLSDNLGRPFALEEDPQPEEHYYSLAILPILSLYLPQFQDAYPSGGWAGHYDISFDANPVVFEPWESGIVVA 393 (448)
T ss_dssp TTTTEEEEEECCCTTSCBCCCSSCCCCHHHHHHHTHHHHHHHCGGGTTCCCSEEEEEEEEEETTSSCEEECGGGCSEEEE
T ss_pred CCCCeEEEecCCcccCCcccccccCCChHHHHHHHHHHHHHhCcCcccCCcccceEEEeccccCCCCcEeeecCCCEEEE
Confidence 88 89999999863 34555 677888 899999999999999888899999999999 998 8999
Q ss_pred eCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 232 YGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 232 ~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
+||+|+||+++|++|+.+|++|.+.
T Consensus 394 ~G~~g~G~~~ap~~g~~la~~i~~~ 418 (448)
T 3axb_A 394 AGTSGSGIMKSDSIGRVAAAVALGM 418 (448)
T ss_dssp ECCTTCCGGGHHHHHHHHHHHHTTC
T ss_pred ECCCchhHhHhHHHHHHHHHHHcCC
Confidence 9999999999999999999999875
No 9
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.93 E-value=1.9e-25 Score=200.38 Aligned_cols=199 Identities=18% Similarity=0.282 Sum_probs=169.6
Q ss_pred CCcEECChhhhhcC-C---CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccC
Q psy5261 57 PVYRDAQPDELVVG-N---KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESE 119 (267)
Q Consensus 57 ~~~~~l~~~el~~~-P---~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ 119 (267)
..+++++++++.++ | ..+..|++++. +++||..++.+|.+.+++.|++++. ++|++++.. .++
T Consensus 128 ~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 207 (382)
T 1ryi_A 128 DSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVW 207 (382)
T ss_dssp TTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTEEEE
T ss_pred CCeEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCceEE
Confidence 57889999999877 6 23456666655 9999999999999999999999987 688877532 257
Q ss_pred CCEEEEccCcCchhhcC----CCCceeecceEEEEECC--CcceEEEeCCeEEEEecCCCeEEEcceeecCCCCCCCCHH
Q psy5261 120 FDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAP--WLSHFYYLDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRH 193 (267)
Q Consensus 120 ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p--~~~~~v~~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~ 193 (267)
||.||+|+|.|+..+.+ ++|+.|.|||++.++++ .++.++++ ...|++|..+|++++|++.+..+++..++++
T Consensus 208 a~~vV~A~G~~s~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~p~~~g~~~vG~~~~~~~~~~~~~~~ 286 (382)
T 1ryi_A 208 ANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYH-DHCYIVPRKSGRLVVGATMKPGDWSETPDLG 286 (382)
T ss_dssp EEEEEECCGGGTHHHHHHTTCCCCCEEEEEEEEEEECCSSCCCSEEEE-TTEEEEECTTSEEEEECCCEETCCCCSCCHH
T ss_pred cCEEEECCChhHHHHHHhcCCCCceeccceEEEEECCCCCCccceEEc-CCEEEEEcCCCeEEEeecccccCCCCCCCHH
Confidence 99999999999987753 57899999999999874 23444444 4679999988899999998877777788899
Q ss_pred HHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------------eEEEeCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 194 DTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL-------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 194 ~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd-------------l~~~~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
..+.+++.+.++||.+...++.+.|+|+||+++| +|+++||+|+|+++||.+|+.+|++|.+.
T Consensus 287 ~~~~l~~~~~~~~p~l~~~~~~~~w~g~~~~t~d~~p~ig~~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~~ 362 (382)
T 1ryi_A 287 GLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNK 362 (382)
T ss_dssp HHHHHHHHHHHHCGGGGGSEEEEEEEEEEEECSSSCCEEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCcCCCceeeEEEEecccCCCCCcEeccCCCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhCC
Confidence 9999999999999999887889999999999998 89999999999999999999999999875
No 10
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.92 E-value=4.2e-25 Score=199.47 Aligned_cols=207 Identities=13% Similarity=0.090 Sum_probs=170.6
Q ss_pred hHhhhCCCcEECChhhhhcC-CC---------CceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--
Q psy5261 51 SIENLVPVYRDAQPDELVVG-NK---------TYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P~---------~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-- 116 (267)
.+++.|.++++++++++.++ |. .+..+++++. +++||..++..|.+.+++.|++++. ++|++++..
T Consensus 126 ~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~ 205 (405)
T 2gag_B 126 ANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGE 205 (405)
T ss_dssp HHHTBTCCCEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSS
T ss_pred HHHhcCCCceEeCHHHHHhhCCCCcccccccccceeEEEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCC
Confidence 34678999999999999876 61 2345666654 9999999999999999999999998 688777531
Q ss_pred ----------ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEEC-C-CcceEEEe-CCeEEEEecCCCeEEEcc
Q psy5261 117 ----------ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWA-P-WLSHFYYL-DYDVYVIPHSNGAVTLGG 179 (267)
Q Consensus 117 ----------~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~-p-~~~~~v~~-~~~~y~~p~~~g~l~lGg 179 (267)
.++||.||+|+|.|+..+.+ ++|+.|.+|+++.+++ + .....+.+ +...|++|..+|++++|+
T Consensus 206 ~~~~v~~~~g~~~a~~vV~a~G~~s~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~ig~ 285 (405)
T 2gag_B 206 KVTGVKTTRGTIHAGKVALAGAGHSSVLAEMAGFELPIQSHPLQALVSELFEPVHPTVVMSNHIHVYVSQAHKGELVMGA 285 (405)
T ss_dssp BEEEEEETTCCEEEEEEEECCGGGHHHHHHHHTCCCCEEEEEEEEEEEEEBCSCCCSEEEETTTTEEEEECTTSEEEEEE
T ss_pred EEEEEEeCCceEECCEEEECCchhHHHHHHHcCCCCCccccceeEEEecCCccccCceEEeCCCcEEEEEcCCCcEEEEe
Confidence 25799999999999977653 6899999999998875 2 23334443 356899998888999999
Q ss_pred eeec-CCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC------------eEEEeCCCchhhhccHHHH
Q psy5261 180 CRHY-DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL------------VIHNYGHGGYGVTTAPGTS 246 (267)
Q Consensus 180 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd------------l~~~~G~gg~G~t~a~~~a 246 (267)
+.+. .+++...+.+..+.+++.+.++||.+.+.++.+.|+|+||+++| +|+++||+|+||++|+.+|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~w~g~~~~t~d~~p~ig~~~~~~l~~~~G~~g~G~~~a~~~g 365 (405)
T 2gag_B 286 GIDSYNGYGQRGAFHVIQEQMAAAVELFPIFARAHVLRTWGGIVDTTMDASPIISKTPIQNLYVNCGWGTGGFKGTPGAG 365 (405)
T ss_dssp EECSSCCCSSCCCTHHHHHHHHHHHHHCGGGGGCEECEEEEEEEEEETTSCCEEEECSSBTEEEEECCGGGCSTTHHHHH
T ss_pred ccCCCCccccCCCHHHHHHHHHHHHHhCCccccCCcceEEeeccccCCCCCCEecccCCCCEEEEecCCCchhhHHHHHH
Confidence 8763 44555677888999999999999999878889999999999998 8999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy5261 247 RYAVQLVKQAL 257 (267)
Q Consensus 247 ~~la~li~~~l 257 (267)
+.+|++|.+.-
T Consensus 366 ~~la~~i~g~~ 376 (405)
T 2gag_B 366 FTLAHTIANDE 376 (405)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHhCCC
Confidence 99999999864
No 11
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.92 E-value=6.6e-25 Score=211.52 Aligned_cols=203 Identities=14% Similarity=0.135 Sum_probs=168.8
Q ss_pred HhhhCCCcE---ECChhhhhcC-C-CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------
Q psy5261 52 IENLVPVYR---DAQPDELVVG-N-KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------- 116 (267)
Q Consensus 52 ~~~~g~~~~---~l~~~el~~~-P-~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------- 116 (267)
+.+.+.+.+ .++++++.++ | ....+|++++. ++++|..++.+|.+.++++|++|+. ++|++|+..
T Consensus 375 ~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t 454 (676)
T 3ps9_A 375 MLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNF 454 (676)
T ss_dssp HHTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEE
T ss_pred HHhcCCcHHHhhhCCHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEE
Confidence 345566554 9999998877 5 24456777765 9999999999999999999999998 688887532
Q ss_pred ----ccCCCEEEEccCcCchhhcC--CCCceeecceEEEEECC-C---cceEEEeCCeEEEEecC--CCeEEEcceeecC
Q psy5261 117 ----ESEFDFVFNCAGLGAQALCR--DRKLTPIRGQVIKVWAP-W---LSHFYYLDYDVYVIPHS--NGAVTLGGCRHYD 184 (267)
Q Consensus 117 ----~~~ad~VV~aaG~~s~~l~~--~~~l~p~rg~~~~~~~p-~---~~~~v~~~~~~y~~p~~--~g~l~lGg~~~~~ 184 (267)
.++||.||+|+|.|+..+.. .+|+.|+|||++.++.+ . ++.++.. . .|++|.. +|++++|++.+..
T Consensus 455 ~~G~~i~Ad~VVlAtG~~s~~l~~~~~lpl~p~rGq~~~~~~~~~~~~l~~~l~~-~-~Yl~P~~~~~g~~~iG~t~~~~ 532 (676)
T 3ps9_A 455 AGDQQATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCY-D-GYLTPQNPANQHHCIGASYHRG 532 (676)
T ss_dssp TTSCEEEESEEEECCGGGGGCSTTTTTCSCEEEEEEEEEEECCTTGGGCCSEEES-S-SEECCCBTTTTEEEEECCCEET
T ss_pred CCCCEEECCEEEECCCcchhccccccCCcceeecCEEEEECCCcccccCCceeEC-C-eeeccccCCCCeEEEeeccCCC
Confidence 25799999999999998875 68999999999999863 2 2333332 2 6999987 7899999999988
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCC-----CCCceeeeccccCCCCC--------------------------------
Q psy5261 185 SYSRDISRHDTASILERCYSLLPRLE-----EAPVLYEWCGLRPHRSL-------------------------------- 227 (267)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~P~l~-----~~~~~~~w~G~rp~~pd-------------------------------- 227 (267)
+.+..++++..+++++.+.++||.+. +.++.+.|+|+||++||
T Consensus 533 ~~d~~~~~~~~~~~l~~l~~~~P~l~~~~~~d~~~~~~~~G~R~~t~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~ 612 (676)
T 3ps9_A 533 SEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAP 612 (676)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSTTCHHHHTCCCTTCCEEEEEEEECTTCCCEEEEEECHHHHHHHTTTTTSCCTTCCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCccccccCcccccceEEEEeCccCCcCCccCcCCChHHHHHHHHhhhccccccccCC
Confidence 88888999999999999999999875 34578999999999876
Q ss_pred ----eEEEeCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 228 ----VIHNYGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 228 ----l~~~~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
+|+++||||+|+++||++|+++|++|.++
T Consensus 613 ~~~~l~~a~G~g~~Gl~~Ap~~ae~lA~~i~g~ 645 (676)
T 3ps9_A 613 VFDDLFMFAALGSRGLCSAPLCAEILAAQMSDE 645 (676)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEeeeecccccHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999875
No 12
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.92 E-value=8.3e-25 Score=211.28 Aligned_cols=203 Identities=15% Similarity=0.113 Sum_probs=168.5
Q ss_pred HhhhCCCcE---ECChhhhhcC-C-CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------
Q psy5261 52 IENLVPVYR---DAQPDELVVG-N-KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------- 116 (267)
Q Consensus 52 ~~~~g~~~~---~l~~~el~~~-P-~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------- 116 (267)
+.+.+.+.+ .++++++.++ | ....+|++++. ++++|..++.+|.+.+++.|++|+. ++|++|+..
T Consensus 370 ~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t 449 (689)
T 3pvc_A 370 MLHTQWPVEFAEAMSREQLSELAGLDCAHDGIHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTF 449 (689)
T ss_dssp HTTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEE
T ss_pred HHhcCCChHHhhccCHHHHHHhcCCCcccceEEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEe
Confidence 345566655 9999999887 6 24456777665 9999999999999999999999998 688877531
Q ss_pred -----ccCCCEEEEccCcCchhhcC--CCCceeecceEEEEECCC----cceEEEeCCeEEEEecC--CCeEEEcceeec
Q psy5261 117 -----ESEFDFVFNCAGLGAQALCR--DRKLTPIRGQVIKVWAPW----LSHFYYLDYDVYVIPHS--NGAVTLGGCRHY 183 (267)
Q Consensus 117 -----~~~ad~VV~aaG~~s~~l~~--~~~l~p~rg~~~~~~~p~----~~~~v~~~~~~y~~p~~--~g~l~lGg~~~~ 183 (267)
.++||.||+|+|.|+..+.. .+|+.|+|||++.++++. ++. +++.. .|++|.. +|++++|++.+.
T Consensus 450 ~~G~~~i~Ad~VVlAtG~~s~~l~~~~~lpl~p~rGq~~~~~~~~~~~~l~~-v~~~~-~Yl~P~~~~~g~~~iGat~~~ 527 (689)
T 3pvc_A 450 GQSQAAKHHATVILATGHRLPEWEQTHHLPLSAVRGQVSHIPTTPVLSQLQQ-VLCYD-GYLTPVNPANQHHCIGASYQR 527 (689)
T ss_dssp C-CCCCEEESEEEECCGGGTTCSTTTTTSCCEEEEEEEEEEECCTTGGGCCS-EEESS-SEECCCBTTTTEEEEECCCEE
T ss_pred CCCcEEEECCEEEECCCcchhccccccCCccccccCcEEEECCCCccccCCe-eEeCC-ceEccccCCCCeEEEEEeccC
Confidence 24799999999999998875 579999999999998632 222 33323 6999987 789999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCC-----CCCceeeeccccCCCCC-------------------------------
Q psy5261 184 DSYSRDISRHDTASILERCYSLLPRLE-----EAPVLYEWCGLRPHRSL------------------------------- 227 (267)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~~P~l~-----~~~~~~~w~G~rp~~pd------------------------------- 227 (267)
.+.+..++.+..+.+++.+.++||.+. +.++.+.|+|+||++||
T Consensus 528 ~~~d~~~~~~~~~~ll~~l~~~~P~l~~~~~~~~~~~~~w~G~R~~t~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~ 607 (689)
T 3pvc_A 528 GDIATDFRLTEQQENRERLLRCLPQVSWPQQVDVSDNQARCGVRCAIRDHLPMVGAVPDYAATLAQYQDLSRRIQHGGES 607 (689)
T ss_dssp TBCCCCCCHHHHHHHHHHHHHHCTTCSGGGGCCCTTCCEEEEEEEECTTSCCEEEEEECHHHHHHHSTTHHHHC------
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCccccccccccccceeEEEeeecCCCCcccCcCCCHHHHHHHHHhhhccccccccc
Confidence 888888999999999999999999986 35678999999999876
Q ss_pred -------------eEEEeCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 228 -------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 228 -------------l~~~~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
+|+++||||+|+++||++|+++|++|.|+
T Consensus 608 ~~~~~~~~~~~~~l~~a~G~g~~Gl~~ap~~ae~lA~~i~g~ 649 (689)
T 3pvc_A 608 EVNDIAVAPVWPELFMVGGLGSRGLCSAPLVAEILAAQMFGE 649 (689)
T ss_dssp --CCCCCCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccCCCCCChHHhhcccccHHHHHHHHHHHHHHHHcCC
Confidence 37899999999999999999999999865
No 13
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.90 E-value=8.2e-23 Score=184.45 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=161.3
Q ss_pred hHhhhCCCcEECChhhhhcC-C----CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-N----KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P----~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------- 116 (267)
.+++.|.+++.++++++.+. | +....|++.+. ++++|..++.+|.+.+++.|++|+. ++|++++..
T Consensus 110 ~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~ 189 (397)
T 2oln_A 110 MMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVT 189 (397)
T ss_dssp HHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEE
T ss_pred HHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEE
Confidence 44667899999999998776 6 12345665555 8999999999999999999999998 688887532
Q ss_pred ----ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEECCC----cceEEEe--CC-----eEEEEecCCC----
Q psy5261 117 ----ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAPW----LSHFYYL--DY-----DVYVIPHSNG---- 173 (267)
Q Consensus 117 ----~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p~----~~~~v~~--~~-----~~y~~p~~~g---- 173 (267)
.++||.||+|+|.|+..+.+ ++|+.|.||+++.++++. .+..+.. +. ..|++|..++
T Consensus 190 t~~g~i~a~~VV~A~G~~s~~l~~~~g~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~y~~p~~~~~~~~ 269 (397)
T 2oln_A 190 TDRGTYRAGKVVLACGPYTNDLLEPLGARLAYSVYEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGE 269 (397)
T ss_dssp ESSCEEEEEEEEECCGGGHHHHHGGGTCCCCEEEEEEEEEEEEBCSCCSCCCEEEEECCCCSSSCCCEEECCCCSSSSSS
T ss_pred ECCCEEEcCEEEEcCCcChHHHhhhcCCCCCeeEEEEEEEEEeecCcccCCCEEEEecCCCCcccceEEECCCCCCCCCc
Confidence 26799999999999887754 589999999999998642 2222222 11 6799998664
Q ss_pred eEEEcceee------cCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccC--CCCC-----------------e
Q psy5261 174 AVTLGGCRH------YDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRP--HRSL-----------------V 228 (267)
Q Consensus 174 ~l~lGg~~~------~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp--~~pd-----------------l 228 (267)
++++|++.+ ..+.+..++++..+.+.+.+.++||.+.. .+.+.|+|+++ ++|| +
T Consensus 270 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~-~~~~~~~g~~~~p~t~D~~p~ig~~~~~~~~~~~l 348 (397)
T 2oln_A 270 FVRCGPDFEVDPLDHPSAATGVADRRQMDRLSGWLRDHLPTVDP-DPVRTSTCLAVLPTDPERQFFLGTARDLMTHGEKL 348 (397)
T ss_dssp EEEEEECCCCSCCSSGGGCCSSCCHHHHHHHHHHHHHHCTTBCS-SCSEEEEEEEEEESSTTCCCEEEESTTTSTTGGGE
T ss_pred eEEEEecCCCCCcCCCccccCCCCHHHHHHHHHHHHHhCCCCCC-CceeEEEEEecCCcCCCCCeEeecCCccccCCCCE
Confidence 799997653 22334557888999999999999999876 77889999987 8876 7
Q ss_pred EEEeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 229 IHNYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 229 ~~~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
|+++| |+||+++|++|+++|++|.+.-
T Consensus 349 ~~a~G--g~G~~~ap~~g~~la~~i~~~~ 375 (397)
T 2oln_A 349 VVYGA--GWAFKFVPLFGRICADLAVEDS 375 (397)
T ss_dssp EEEEE--SSCGGGHHHHHHHHHHHHHHSC
T ss_pred EEEeC--cchhhccHHHHHHHHHHHhCCC
Confidence 88999 7899999999999999998863
No 14
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.90 E-value=7.8e-23 Score=186.98 Aligned_cols=205 Identities=14% Similarity=0.193 Sum_probs=157.3
Q ss_pred hhCCCc-EECChhhhhcC-CC-----Ccee--EEEe-ee-eeeehHHHHHHHHHHHHhCCcEEEE-E---eeCCcccc--
Q psy5261 54 NLVPVY-RDAQPDELVVG-NK-----TYKY--GSYS-ET-LVIENSDFLPWAMKRVSKQGGKFRR-G---TVSSFSGL-- 116 (267)
Q Consensus 54 ~~g~~~-~~l~~~el~~~-P~-----~~~~--g~~~-~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~---~V~~l~~~-- 116 (267)
..+.++ ++++++++.++ |. .+.+ |+++ .. +++||..++.+|++.++++|++|+. + +|++|...
T Consensus 116 ~~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~ 195 (438)
T 3dje_A 116 GEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENN 195 (438)
T ss_dssp GGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETT
T ss_pred cccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCC
Confidence 346676 88999999988 82 1234 6554 45 8999999999999999999999998 6 78887531
Q ss_pred -----------ccCCCEEEEccCcCchhhcC-CCCceeecceEEEEECCC-----c-ceEEE-e-CCeEEEEecCC-CeE
Q psy5261 117 -----------ESEFDFVFNCAGLGAQALCR-DRKLTPIRGQVIKVWAPW-----L-SHFYY-L-DYDVYVIPHSN-GAV 175 (267)
Q Consensus 117 -----------~~~ad~VV~aaG~~s~~l~~-~~~l~p~rg~~~~~~~p~-----~-~~~v~-~-~~~~y~~p~~~-g~l 175 (267)
.++||.||+|+|.|+..|++ ..++.|.++++..++.+. + ..++. + +...|+.|..+ +.+
T Consensus 196 ~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~~l~~~~~p~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l 275 (438)
T 3dje_A 196 DVKGAVTADGKIWRAERTFLCAGASAGQFLDFKNQLRPTAWTLVHIALKPEERALYKNIPVIFNIERGFFFEPDEERGEI 275 (438)
T ss_dssp EEEEEEETTTEEEECSEEEECCGGGGGGTSCCTTCCEEEEEEEEEEECCGGGHHHHTTCCEEEETTTEEECSCCTTTCEE
T ss_pred eEEEEEECCCCEEECCEEEECCCCChhhhcCcccceeeEEEEEEEEEcChHHhhhhcCCCEEEECCCceecCCCCCCCeE
Confidence 25799999999999999986 557889877766666421 1 22333 2 35667667744 457
Q ss_pred EEc----ceeecC----------CC-CCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC-------------
Q psy5261 176 TLG----GCRHYD----------SY-SRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL------------- 227 (267)
Q Consensus 176 ~lG----g~~~~~----------~~-~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd------------- 227 (267)
++| |..... .. +...+.+..+.+.+.+.++||.|.+.++.+.|+|+||+|||
T Consensus 276 ~i~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~g~~~~t~D~~piig~~p~~~~ 355 (438)
T 3dje_A 276 KICDEHPGYTNMVQSADGTMMSIPFEKTQIPKEAETRVRALLKETMPQLADRPFSFARICWCADTANREFLIDRHPQYHS 355 (438)
T ss_dssp EEEECCSCEECEEECTTCCEEECCCCCSSCBHHHHHHHHHHHHHHCGGGTTCCCSEEEEEEEEECTTSCCEEEECSSCTT
T ss_pred EEEeCCCCccCCccCCCcccccCCcccccCCHHHHHHHHHHHHHhCcccccCCcceeeEEEeCcCCCCCeEEeecCCCCC
Confidence 774 332110 00 13456778889999999999999999999999999999998
Q ss_pred eEEEeCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 228 VIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 228 l~~~~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
+|+++||+|+||+++|++|+.+|++|.+...
T Consensus 356 l~~a~G~~g~G~~~ap~~g~~la~~i~g~~~ 386 (438)
T 3dje_A 356 LVLGCGASGRGFKYLPSIGNLIVDAMEGKVP 386 (438)
T ss_dssp EEEEECCTTCCGGGTTTHHHHHHHHHHTCCC
T ss_pred EEEEECCCCcchhhhHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999988753
No 15
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=99.89 E-value=3.3e-23 Score=188.10 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=150.7
Q ss_pred ECChhhhhcC-C--------CCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeC---------Ccccc----
Q psy5261 61 DAQPDELVVG-N--------KTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVS---------SFSGL---- 116 (267)
Q Consensus 61 ~l~~~el~~~-P--------~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~---------~l~~~---- 116 (267)
+++++++.+. | .....+++++. +++||..++.+|.+.+++.|++|++ ++|+ +++..
T Consensus 135 ~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v 214 (405)
T 3c4n_A 135 LTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQ 214 (405)
T ss_dssp CEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-----
T ss_pred CCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeE
Confidence 5667777655 5 23445665554 9999999999999999999999997 6888 77532
Q ss_pred -------ccCCCEEEEccCcCchhhcC-----CCCceeecceEEEEECCC--cceEEEeCCeEEEEecCCCeEEEcceee
Q psy5261 117 -------ESEFDFVFNCAGLGAQALCR-----DRKLTPIRGQVIKVWAPW--LSHFYYLDYDVYVIPHSNGAVTLGGCRH 182 (267)
Q Consensus 117 -------~~~ad~VV~aaG~~s~~l~~-----~~~l~p~rg~~~~~~~p~--~~~~v~~~~~~y~~p~~~g~l~lGg~~~ 182 (267)
.++||.||+|+|.|+..|.+ +.++.|++||++.++.|. ...++.+ ...|++|..+|.+++|++..
T Consensus 215 ~v~~~~g~i~a~~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~y~~p~~~g~~~~G~t~~ 293 (405)
T 3c4n_A 215 IVVHETRQIRAGVIIVAAGAAGPALVEQGLGLHTRHGRAYRQFPRLDLLSGAQTPVLRA-SGLTLRPQNGGYTLVPAIHH 293 (405)
T ss_dssp --CBCCEEEEEEEEEECCGGGHHHHHHHHHCCCCCCEEEEEECCEECSCCCTTCCEEEE-TTEEEEEETTEEEEECCCCS
T ss_pred EEEECCcEEECCEEEECCCccHHHHHHHhcCCCCCcccceeEEEEECCCCccCCCeEEC-CcEEEEEcCCCeEEEecccc
Confidence 25799999999999976543 568899999998887643 2233433 56899999888888888743
Q ss_pred --cCCCC----------CCCCHHHHHHHHHHHHhhCCCCCCCC---------ceeeeccccCCCCC-----------eEE
Q psy5261 183 --YDSYS----------RDISRHDTASILERCYSLLPRLEEAP---------VLYEWCGLRPHRSL-----------VIH 230 (267)
Q Consensus 183 --~~~~~----------~~~~~~~~~~l~~~~~~~~P~l~~~~---------~~~~w~G~rp~~pd-----------l~~ 230 (267)
..+++ ...+.+.++.+.+.+ ++||.+.+.+ +.+.|+|+||++|| +|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~P~l~~~~~~~~r~~~~i~~~w~G~r~~t~D~~P~ig~~~~gl~~ 372 (405)
T 3c4n_A 294 RDPHGYHPAGGSLTGVPTGLRRELLEDLVGLM-DAVPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQAEELAPGLHL 372 (405)
T ss_dssp CBCSSCCCCCCCBTTBCCSSCHHHHHHHHHHT-TTCGGGGSSCBCCCSSGGGSCEEEEEEGGGCTTCCCEEEEEETTEEE
T ss_pred ccccCcCcccccccccccCCCHHHHHHHHHHH-HhCCCccccCccccccccceeeEEEeecCcCCCCCCEecccCCCeEE
Confidence 33343 224567777777664 8999987754 88999999999998 899
Q ss_pred EeCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 231 NYGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 231 ~~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
++||+|+ +++||++|+++|++|.+..+
T Consensus 373 a~G~~g~-~~~ap~~a~~la~~i~~~~~ 399 (405)
T 3c4n_A 373 LLGGPLA-DTLGLAAAHELAQRVSASLE 399 (405)
T ss_dssp EECCTTH-HHHHHHHHHHHHHHHHHHHC
T ss_pred EEccCcH-HHHHHHHHHHHHHHHhCchh
Confidence 9999886 49999999999999998653
No 16
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.88 E-value=2.8e-22 Score=197.27 Aligned_cols=203 Identities=18% Similarity=0.148 Sum_probs=163.5
Q ss_pred hHhhhCCCcEECChhhhhcC-CC----CceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-NK----TYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P~----~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------- 116 (267)
.+++.|.+++.++++++.++ |. .+.+|++++. +++||..++.+|++.++++|++|+. ++|++|+..
T Consensus 108 ~~~~~G~~~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V 187 (830)
T 1pj5_A 108 YAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGV 187 (830)
T ss_dssp HHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEE
T ss_pred HHHHcCCCeEEECHHHHHHhCccCCccceEEEEEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEE
Confidence 35678999999999999887 71 2456666654 9999999999999999999999997 688877531
Q ss_pred -----ccCCCEEEEccCcCchhhcC----CCCceeecceEEEEECC-C----------cceEEE-e-CCeEEEEecCCCe
Q psy5261 117 -----ESEFDFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAP-W----------LSHFYY-L-DYDVYVIPHSNGA 174 (267)
Q Consensus 117 -----~~~ad~VV~aaG~~s~~l~~----~~~l~p~rg~~~~~~~p-~----------~~~~v~-~-~~~~y~~p~~~g~ 174 (267)
.++||.||+|+|.|+..+.+ ++|+.|++||++.+++. . ...+++ + +...|++|..+ +
T Consensus 188 ~t~~G~i~Ad~VV~AaG~~s~~l~~~~g~~~pl~p~~g~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~y~r~~~~-~ 266 (830)
T 1pj5_A 188 QTADGVIPADIVVSCAGFWGAKIGAMIGMAVPLLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRHQDQDLYYREHGD-R 266 (830)
T ss_dssp EETTEEEECSEEEECCGGGHHHHHHTTTCCCCCEEEEEEEEEESCCGGGTTTSCTTTCCCSCEEEEGGGTEEEEEETT-E
T ss_pred EECCcEEECCEEEECCccchHHHHHHhCCCccceeceeEEEEEecCcccccccccccCCCCCeEEcCCCCEEEEEeCC-e
Confidence 26799999999999988742 68999999999998752 1 122343 2 34578998866 8
Q ss_pred EEEcceeec---------CC------------CCCCCCHHHHHHHHHHHHhhCCCCCCCCceeeeccccCCCCC------
Q psy5261 175 VTLGGCRHY---------DS------------YSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSL------ 227 (267)
Q Consensus 175 l~lGg~~~~---------~~------------~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~rp~~pd------ 227 (267)
+++|++... .. .+..++.+.++.+++.+.++||.+.+.++.+.|+|+||+|||
T Consensus 267 l~iG~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~t~D~~PiIG 346 (830)
T 1pj5_A 267 YGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAWEATKQLLPALADSEIEDGFNGIFSFTPDGGPLLG 346 (830)
T ss_dssp EEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTEECCCHHHHHHHHHHHHHHCGGGGGSCEEEEEEEEEEECTTSCCEEE
T ss_pred EEEeccCCCCcccCcccccccccccccccccccccCCCHHHHHHHHHHHHHhCccccccCcceEEEeecccCCCCCeeec
Confidence 889987421 11 123467888999999999999999888999999999999998
Q ss_pred -------eEEEeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 228 -------VIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 228 -------l~~~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
+|+++|| |+++||++|+++|++|.+.-
T Consensus 347 ~~p~~~gl~va~G~---G~~~ap~~g~~la~li~~~~ 380 (830)
T 1pj5_A 347 ESKELDGFYVAEAV---WVTHSAGVAKAMAELLTTGR 380 (830)
T ss_dssp ECSSSBTEEEEESC---CGGGHHHHHHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECc---hHHhhHHHHHHHHHHHhCCC
Confidence 8999998 79999999999999998863
No 17
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=99.87 E-value=4.3e-21 Score=181.52 Aligned_cols=200 Identities=19% Similarity=0.212 Sum_probs=157.7
Q ss_pred hhCCCcEECChhhhhcC-C----CCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc------------
Q psy5261 54 NLVPVYRDAQPDELVVG-N----KTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG------------ 115 (267)
Q Consensus 54 ~~g~~~~~l~~~el~~~-P----~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~------------ 115 (267)
+.+.+.+.++++++.++ | +.+.+|+++.++++||.+++.+|++.++++|++|++ ++|+++..
T Consensus 149 ~~~~~~~~l~~~e~~~~~P~l~~~~~~gg~~~~dg~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d 228 (571)
T 2rgh_A 149 GTKYENYTLTPEEVLEREPFLKKEGLKGAGVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARD 228 (571)
T ss_dssp SSTTCCEEECHHHHHHHCTTSCCTTEEEEEEECCEECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCCcEEECHHHHHHhCcCCchhhceEEEEecCCeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEE
Confidence 35678999999999887 7 235567777789999999999999999999999987 67776631
Q ss_pred ---c---ccCCCEEEEccCcCchhhcC----C---CCceeecceEEEEECCC--cc-eEEEe----C-CeEEEEecCCCe
Q psy5261 116 ---L---ESEFDFVFNCAGLGAQALCR----D---RKLTPIRGQVIKVWAPW--LS-HFYYL----D-YDVYVIPHSNGA 174 (267)
Q Consensus 116 ---~---~~~ad~VV~aaG~~s~~l~~----~---~~l~p~rg~~~~~~~p~--~~-~~v~~----~-~~~y~~p~~~g~ 174 (267)
. .++||.||||+|+|+..+.+ + .++.|+||+++.++.+. .. ..+++ + ...|++|.. +.
T Consensus 229 ~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~i~p~rG~~l~~~~~~~~~~~~~~~~~~~~dgr~~~~~P~~-~~ 307 (571)
T 2rgh_A 229 LLTDEVIEIKAKLVINTSGPWVDKVRNLNFTRPVSPKMRPTKGIHLVVDAKKLPVPQPTYFDTGKQDGRMVFAIPRE-NK 307 (571)
T ss_dssp TTTCCEEEEEBSCEEECCGGGHHHHHTTCCSSCCCCCBCCEEEEEEEEEGGGSCCSSCEEEECSSSSSCEEEEEEET-TE
T ss_pred cCCCCEEEEEcCEEEECCChhHHHHHHhhccCccCceeeccceEEEEeccccCCCCcEEEEeccCCCCcEEEEEEcC-Ce
Confidence 1 25799999999999988764 1 56999999999998631 22 22332 2 357899985 58
Q ss_pred EEEcceeec---CCCCCCCCHHHHHHHHHHHHhhCCCC--CCCCceeeeccccCCCCC--------------------eE
Q psy5261 175 VTLGGCRHY---DSYSRDISRHDTASILERCYSLLPRL--EEAPVLYEWCGLRPHRSL--------------------VI 229 (267)
Q Consensus 175 l~lGg~~~~---~~~~~~~~~~~~~~l~~~~~~~~P~l--~~~~~~~~w~G~rp~~pd--------------------l~ 229 (267)
+++|++.+. ...+..++++.++.+++.+.++||.+ ...++...|+|+||+++| ++
T Consensus 308 ~~iG~t~~~~~~~~~~~~~~~~~~~~ll~~~~~~~P~~~l~~~~v~~~waG~Rp~~~d~~~~~~~~~r~~~i~~~~~gl~ 387 (571)
T 2rgh_A 308 TYFGTTDTDYQGDFTDPKVTQEDVDYLLDVINHRYPEANITLADIEASWAGLRPLLIGNSGSPSTISRGSSLEREPDGLL 387 (571)
T ss_dssp EEECCCCEECCSCSSSCCCCHHHHHHHHHHHHHHSTTTCCCGGGCCEEEEEEECCBCC-----------EEEEECTTSCE
T ss_pred EEEcCCCcCCCCCcCCCCCCHHHHHHHHHHHHHhcCccCCchhceeEEeEEeeeccCCCCCCcccCCCCcEEecCCCCeE
Confidence 999999764 23456788999999999999999974 667889999999999874 44
Q ss_pred EEeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 230 HNYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 230 ~~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
+++|. .||+++.+|+.+++++.+.+
T Consensus 388 ~v~GG---k~Tt~r~~Ae~~~~~i~~~l 412 (571)
T 2rgh_A 388 TLSGG---KITDYRKMAEGALRLIRQLL 412 (571)
T ss_dssp EEEEC---CGGGHHHHHHHHHHHHHHHH
T ss_pred EEeCc---chhhHHHHHHHHHHHHHHHh
Confidence 44442 39999999999999999887
No 18
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=99.85 E-value=9.8e-21 Score=176.43 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=156.5
Q ss_pred CcEECChhhhhcC---C---CCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc-------------c-
Q psy5261 58 VYRDAQPDELVVG---N---KTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG-------------L- 116 (267)
Q Consensus 58 ~~~~l~~~el~~~---P---~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~-------------~- 116 (267)
.+++++++++.++ | ..+.+|+.+.++++||.+++.+|++.++++|++++. ++|++++. .
T Consensus 113 ~~~~l~~~~~~~~~~~P~l~~~~~~~~~~~~g~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G 192 (501)
T 2qcu_A 113 KRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTG 192 (501)
T ss_dssp CCSSSCCCEEEECCTTSSBCTTCCEEEEEEEEEECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTC
T ss_pred CcEEECHHHHHHhhcCCCcchhceEEEEeeCCEEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCC
Confidence 6788898887543 3 135567777779999999999999999999999987 67776632 1
Q ss_pred ---ccCCCEEEEccCcCchhhcC-------CCCceeecceEEEEECCC-cc-eEEE---eCCeEEEEecCCCeEEEccee
Q psy5261 117 ---ESEFDFVFNCAGLGAQALCR-------DRKLTPIRGQVIKVWAPW-LS-HFYY---LDYDVYVIPHSNGAVTLGGCR 181 (267)
Q Consensus 117 ---~~~ad~VV~aaG~~s~~l~~-------~~~l~p~rg~~~~~~~p~-~~-~~v~---~~~~~y~~p~~~g~l~lGg~~ 181 (267)
.++||.||||+|.|+..+.+ +.++.|+||+++.++.+. .. ..++ +....|++|..+|.+++|++.
T Consensus 193 ~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~~i~p~rG~~~~~~~~~~~~~~~~~~~~dg~~~~~~P~~~g~~~iG~t~ 272 (501)
T 2qcu_A 193 KKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTD 272 (501)
T ss_dssp CEEEEEESCEEECCGGGHHHHHHHHTCCCCSSCBCCEEEEEEEEECSSSCSCEEEEECTTSCEEEEEEETTTEEEEECCC
T ss_pred CEEEEECCEEEECCChhHHHHHHHhccCCcccccccceeEEEEECCCCCCceEEEeecCCCCEEEEEEcCCCcEEEcCCC
Confidence 25799999999999987643 268999999999998532 12 2333 224679999988899999987
Q ss_pred ecC---CCCCCCCHHHHHHHHHHHHhhCC-CCCCCCceeeeccccCCCCC------------eEE---EeC------CCc
Q psy5261 182 HYD---SYSRDISRHDTASILERCYSLLP-RLEEAPVLYEWCGLRPHRSL------------VIH---NYG------HGG 236 (267)
Q Consensus 182 ~~~---~~~~~~~~~~~~~l~~~~~~~~P-~l~~~~~~~~w~G~rp~~pd------------l~~---~~G------~gg 236 (267)
+.. ..+..++++..+.+++.+.++|| .+...++...|+|+||+++| ++. ..| ..|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~l~~~~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~G 352 (501)
T 2qcu_A 273 VEYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFG 352 (501)
T ss_dssp EECCSCGGGCCCCHHHHHHHHHHHHHHBSSCCCGGGCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEEC
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEEEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEeC
Confidence 642 24567889999999999999999 88888899999999999986 332 111 124
Q ss_pred hhhhccHHHHHHHHHHHHhhh
Q psy5261 237 YGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 237 ~G~t~a~~~a~~la~li~~~l 257 (267)
.|||.++.+|+.+++++.+.+
T Consensus 353 g~~t~~~~~Ae~~~~~~~~~~ 373 (501)
T 2qcu_A 353 GKLTTYRKLAEHALEKLTPYY 373 (501)
T ss_dssp CCGGGHHHHHHHHHHHHGGGS
T ss_pred ccccchHHHHHHHHHHHHHhh
Confidence 579999999999999999887
No 19
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=99.85 E-value=2e-20 Score=176.65 Aligned_cols=200 Identities=21% Similarity=0.203 Sum_probs=157.0
Q ss_pred CCCcEECChhhhhcC-C----CCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------
Q psy5261 56 VPVYRDAQPDELVVG-N----KTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------- 116 (267)
Q Consensus 56 g~~~~~l~~~el~~~-P----~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------- 116 (267)
+...+.++++++.++ | +.+.+|+.+.++++||.+++.+|++.++++|++|+. ++|+++...
T Consensus 133 ~~~~~~l~~~~~~~~~P~l~~~~~~gg~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~ 212 (561)
T 3da1_A 133 DERRYMLNEKQTLEKEPLLRKENLKGGGIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRL 212 (561)
T ss_dssp ---CEEECHHHHHHHCTTSCCTTCCEEEEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETT
T ss_pred CCCcEEECHHHHHHhCccCChhhceeEEEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcC
Confidence 556889999999887 7 235677788889999999999999999999999998 688776421
Q ss_pred -----ccCCCEEEEccCcCchhhcC------CCCceeecceEEEEECCC--cceEE-E----eCCeEEEEecCCCeEEEc
Q psy5261 117 -----ESEFDFVFNCAGLGAQALCR------DRKLTPIRGQVIKVWAPW--LSHFY-Y----LDYDVYVIPHSNGAVTLG 178 (267)
Q Consensus 117 -----~~~ad~VV~aaG~~s~~l~~------~~~l~p~rg~~~~~~~p~--~~~~v-~----~~~~~y~~p~~~g~l~lG 178 (267)
.++|+.||||+|.|+..+.+ ..++.|.||+++.++.+. ....+ + +....|++|. +|.+++|
T Consensus 213 tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~~~~~v~p~kG~~lvl~~~~~~~~~~~~~~~~~dgr~v~~iP~-~g~~~iG 291 (561)
T 3da1_A 213 TDTTHTIYAKKVVNAAGPWVDTLREKDRSKHGKYLKLSKGVHLVVDQSRFPLRQAVYFDTESDGRMIFAIPR-EGKTYIG 291 (561)
T ss_dssp TCCEEEEEEEEEEECCGGGHHHHHHTTTCCCSSEEEEEEEEEEEEEGGGSCCSSEEEECCSSSCCCEEEEEE-TTEEEEC
T ss_pred CCceEEEECCEEEECCCcchHHHHHhcCCCCCceEEeccEEEEEECCccCCCceEEEeccCCCCcEEEEEec-CCCEEEc
Confidence 25799999999999988753 267999999999998532 22333 3 1234789999 6799999
Q ss_pred ceeec---CCCCCCCCHHHHHHHHHHHHhhCCCCC--CCCceeeeccccCCCCC--------------------eEEEeC
Q psy5261 179 GCRHY---DSYSRDISRHDTASILERCYSLLPRLE--EAPVLYEWCGLRPHRSL--------------------VIHNYG 233 (267)
Q Consensus 179 g~~~~---~~~~~~~~~~~~~~l~~~~~~~~P~l~--~~~~~~~w~G~rp~~pd--------------------l~~~~G 233 (267)
+|.+. ...+..++++.++.+++.+.++||.+. ..++...|+|+||.++| ++..
T Consensus 292 tT~~~~~~~~~~~~~t~~~i~~ll~~~~~~~P~l~~~~~~v~~~~aGlRPl~~~~~~~~~~~sR~~~i~~~~~gli~i-- 369 (561)
T 3da1_A 292 TTDTFYDKDIASPRMTVEDRDYILAAANYMFPSLRLTADDVESSWAGLRPLIHEEGKKASEISRKDEIFFSDSGLISI-- 369 (561)
T ss_dssp CCCEEECSCTTCCCCCHHHHHHHHHHHHHHCTTCCCCTTTEEEEEEEEEEEEEC-----------CCEEECSSCCEEE--
T ss_pred CCCCccCCCcCCCCCCHHHHHHHHHHHHHhCCCCCCChhhEEEEeEEeccccCCCCCCccccccceEEEecCCCeEEE--
Confidence 99864 235677899999999999999999986 67899999999998532 2222
Q ss_pred CCchhhhccHHHHHHHHHHHHhhhCC
Q psy5261 234 HGGYGVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 234 ~gg~G~t~a~~~a~~la~li~~~l~~ 259 (267)
.||. ||.++.+|+.+++++...++.
T Consensus 370 ~Ggk-~Tt~r~mAe~~~d~~~~~~~~ 394 (561)
T 3da1_A 370 AGGK-LTGYRKMAERTVDAVAQGLNV 394 (561)
T ss_dssp CCCC-STTHHHHHHHHHHHHHHHHTC
T ss_pred eCCh-hhhHHHHHHHHHHHHHHhcCC
Confidence 3344 999999999999999988863
No 20
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=98.36 E-value=1.5e-06 Score=77.22 Aligned_cols=172 Identities=17% Similarity=0.177 Sum_probs=108.6
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCchh--hc-CCC-Cce
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQA--LC-RDR-KLT 141 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~~--l~-~~~-~l~ 141 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||.|+|.++.- .+ -+. +..
T Consensus 97 ~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s~~~~~~g~~~~~~~ 176 (397)
T 3cgv_A 97 YVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILA 176 (397)
T ss_dssp EEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHTCCTTCCC
T ss_pred EEEeHHHHHHHHHHHHHhCCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCCcchHhHHhcCCCccCCC
Confidence 5788999999999999999999987 577665321 25799999999999831 11 122 221
Q ss_pred e---ecceEEEEECC----CcceEEEe----CCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCC
Q psy5261 142 P---IRGQVIKVWAP----WLSHFYYL----DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE 210 (267)
Q Consensus 142 p---~rg~~~~~~~p----~~~~~v~~----~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~ 210 (267)
| ..+....+... .......+ ....|++|..++++.+|-+...... .........++...+.+|.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 253 (397)
T 3cgv_A 177 RNDIISALQYRMINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINWI---HNRFELKNYLDRFIENHPGLK 253 (397)
T ss_dssp GGGEEEEEEEEEESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTTC---SCHHHHHHHHHHHHHTCHHHH
T ss_pred hhheeEEEEEEeccCCCCCCcEEEEeCCcCCCceEEEEECCCCeEEEEEEeccccc---cCCCCHHHHHHHHHHhCcCCC
Confidence 2 22222233321 11111111 2357888988878888876654322 233444455555555556555
Q ss_pred CCCceeeeccccCCCC-------C-eEEE-------eCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 211 EAPVLYEWCGLRPHRS-------L-VIHN-------YGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 211 ~~~~~~~w~G~rp~~p-------d-l~~~-------~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
..++...|.|..|+.. + +++. ..++|.|+.++...|..+++.+...+
T Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~a~~~a~~la~~l~~~~ 315 (397)
T 3cgv_A 254 KGQDIQLVTGGVSVSKVKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAI 315 (397)
T ss_dssp TSEEEEEEEEEEECCCCCSCCEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEeeeeeeeecCCCccceeeCCEEEEEccccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6677888888877632 1 3322 34689999999999999998887654
No 21
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=98.13 E-value=2.5e-06 Score=76.64 Aligned_cols=173 Identities=14% Similarity=0.077 Sum_probs=99.8
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch--hhcC-CCCcee
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ--ALCR-DRKLTP 142 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~--~l~~-~~~l~p 142 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||+|+|.++. ..+. +.+..+
T Consensus 101 ~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g~~~~~~~ 180 (421)
T 3nix_A 101 WQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSGF 180 (421)
T ss_dssp EECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTTCEECCSS
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcCCCCCCcC
Confidence 6789999999999999999999997 687776421 1679999999999983 2222 223222
Q ss_pred ecceEEEEE--C----CCc--ce-EE-E----eCCeEEEEecCCCeEEEcceeecCCCCC-CCCHHHHHHHHHHHHhhCC
Q psy5261 143 IRGQVIKVW--A----PWL--SH-FY-Y----LDYDVYVIPHSNGAVTLGGCRHYDSYSR-DISRHDTASILERCYSLLP 207 (267)
Q Consensus 143 ~rg~~~~~~--~----p~~--~~-~v-~----~~~~~y~~p~~~g~l~lGg~~~~~~~~~-~~~~~~~~~l~~~~~~~~P 207 (267)
...+.+.+. . +.. .. .+ . .....|++|..++++.+|-......++. ..+ .+..++...+.+|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~---~~~~l~~~~~~~p 257 (421)
T 3nix_A 181 ESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGT---PEERMRAMIANEG 257 (421)
T ss_dssp CCCEEEEEEEECTTCCC----CCSEEEEEEEETTEEEEEEECTTSEEEEEEEECHHHHTTSCSC---HHHHHHHHHHTCT
T ss_pred CCcEEEEEEECCCcCCCccCCCCeEEEEEeCCCCEEEEEEEECCCCEEEEEEecHHHhhhcCCC---HHHHHHHHHHhCc
Confidence 333333332 1 111 11 11 1 1235678898888877776543322111 112 2223334444455
Q ss_pred CC----CCCCce---eeeccc----cCCCCC-eEE-------EeCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 208 RL----EEAPVL---YEWCGL----RPHRSL-VIH-------NYGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 208 ~l----~~~~~~---~~w~G~----rp~~pd-l~~-------~~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
.+ ...+.. ..|.+. ++...+ +++ ...+.|.|+++|...|..+++.|...+.
T Consensus 258 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~ 327 (421)
T 3nix_A 258 HIAERFKSEEFLFEPRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLK 327 (421)
T ss_dssp TTHHHHTTCCBSSCCEEEECCCBEESCSEETTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCccccCceeecccceeeeeeccCCEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHhc
Confidence 43 222222 222221 122223 222 2346899999999999999999987764
No 22
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.03 E-value=6.9e-05 Score=69.24 Aligned_cols=167 Identities=11% Similarity=0.006 Sum_probs=102.8
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc--------------ccCCCEEEEccCcCchhhcC--CC------Cc
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL--------------ESEFDFVFNCAGLGAQALCR--DR------KL 140 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l~~--~~------~l 140 (267)
..+++..+...|.+.+++.|++++..+|++++.. .++||.||.|+|.++..+.. .. +.
T Consensus 168 ~~~~~~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~~~~~~~~ 247 (511)
T 2weu_A 168 YHFDADEVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGRFQSFSDV 247 (511)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCCCEEECTTT
T ss_pred EEEcHHHHHHHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCCcccccc
Confidence 6799999999999999999999987666665421 25799999999999865332 12 22
Q ss_pred eeecce-EEEEECCC---c-ceE--EE-eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHH-HHHHHHHhhCCCCCC
Q psy5261 141 TPIRGQ-VIKVWAPW---L-SHF--YY-LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTA-SILERCYSLLPRLEE 211 (267)
Q Consensus 141 ~p~rg~-~~~~~~p~---~-~~~--v~-~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~-~l~~~~~~~~P~l~~ 211 (267)
.|.... .+.++.+. . ... .. .....+++|..+ +..+|-.... . ..+++... .+.+.. ...|.+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~-~~~~g~~~~~-~---~~~~~~~~~~l~~~~-~~~~~~~~ 321 (511)
T 2weu_A 248 LPNNRAVALRVPRENDEDMRPYTTATAMSAGWMWTIPLFK-RDGNGYVYSD-E---FISPEEAERELRSTV-APGRDDLE 321 (511)
T ss_dssp CCCCEEEEEEEECSSGGGCCSSEEEEEETTEEEEEEECSS-EEEEEEEECT-T---TSCHHHHHHHHHHHH-CTTCTTSC
T ss_pred CcccceEEEEeccCCCCCCCcceeceecCCCcEEEEECCC-ceEEEEEECC-C---CCCHHHHHHHHHHHh-Cccccccc
Confidence 333322 22333211 1 111 11 234578888766 5666554321 1 22343333 344333 44455555
Q ss_pred CCceeeeccccCCCC-C-eEEE-------eCCCchhhhccHHHHHHHHHHHHh
Q psy5261 212 APVLYEWCGLRPHRS-L-VIHN-------YGHGGYGVTTAPGTSRYAVQLVKQ 255 (267)
Q Consensus 212 ~~~~~~w~G~rp~~p-d-l~~~-------~G~gg~G~t~a~~~a~~la~li~~ 255 (267)
..+...|.|.++... + +++. ..++|.|+.++...|..+|+.+.+
T Consensus 322 ~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~~ 374 (511)
T 2weu_A 322 ANHIQMRIGRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFPG 374 (511)
T ss_dssp CEEEECCCEEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCCC
T ss_pred ceeEEeeccccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhcc
Confidence 566778888877653 3 3322 235789999999999999988753
No 23
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=97.71 E-value=0.00039 Score=65.00 Aligned_cols=167 Identities=9% Similarity=0.002 Sum_probs=96.0
Q ss_pred eeeehHHHHHHHHHHHHhC-CcEEEEEeeCCcccc--------------ccCCCEEEEccCcCchhhcCC--CC------
Q psy5261 83 LVIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGL--------------ESEFDFVFNCAGLGAQALCRD--RK------ 139 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l~~~--~~------ 139 (267)
..+++..+...|.+.+++. |++++..+|++++.. .++||.||.|+|.++..+... .+
T Consensus 189 ~~~~~~~l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~~~~~~~ 268 (550)
T 2e4g_A 189 WHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSD 268 (550)
T ss_dssp EEECHHHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCCCEEECTT
T ss_pred eEEcHHHHHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCCCcccccc
Confidence 6799999999999999998 999987666665321 257999999999998654321 11
Q ss_pred ceeecce-EEEEECC-----Ccce--EEE-eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCC
Q psy5261 140 LTPIRGQ-VIKVWAP-----WLSH--FYY-LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE 210 (267)
Q Consensus 140 l~p~rg~-~~~~~~p-----~~~~--~v~-~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~ 210 (267)
..+.... .+.++.+ .... ... .....+++|..+ +..+|.... .. ..+++.....+.......|.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ipl~~-~~~~g~v~~-~~---~~~~~~~~~~l~~~~~~~p~l~ 343 (550)
T 2e4g_A 269 HLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLG-RFGTGYVYS-SR---FATEDEAVREFCEMWHLDPETQ 343 (550)
T ss_dssp TCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEECSS-EEEEEEEEC-TT---TSCHHHHHHHHHHHTTCCTTTS
T ss_pred cccccceEEEeecccCCcccCCCceeeeecCCceEEEccCCC-ccceEEEEe-cC---CCChHHHHHHHHHhhCcCcccC
Confidence 1222221 2222211 1111 111 224457788755 444544432 11 1244443333332223334454
Q ss_pred CCCceeeeccccCCC-CCeEEEeC--------CCchhhhccHHHHHHHHHHHH
Q psy5261 211 EAPVLYEWCGLRPHR-SLVIHNYG--------HGGYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 211 ~~~~~~~w~G~rp~~-pdl~~~~G--------~gg~G~t~a~~~a~~la~li~ 254 (267)
+......+.|.++.. .+=++..| ++|.|+.++...|..+++.+.
T Consensus 344 ~~~~i~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~ 396 (550)
T 2e4g_A 344 PLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFP 396 (550)
T ss_dssp CCEEEECCCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CCceEEecCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhcc
Confidence 445556667776632 23123334 368899999999999988764
No 24
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=97.65 E-value=0.00079 Score=61.17 Aligned_cols=170 Identities=14% Similarity=0.062 Sum_probs=102.7
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc--------------c----ccCCCEEEEccCcCchh--hcC-CCC-
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--------------L----ESEFDFVFNCAGLGAQA--LCR-DRK- 139 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--------------~----~~~ad~VV~aaG~~s~~--l~~-~~~- 139 (267)
..++...+...|.+.+++.|++++. ++|+++.. . .++||.||.|+|.++.- .+. ..|
T Consensus 95 ~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~vr~~l~~~~~~ 174 (453)
T 3atr_A 95 FELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPI 174 (453)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTTGGGSCTTSGG
T ss_pred EEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhhHHhcCCCCCc
Confidence 5688889999999999999999987 56655421 1 35799999999999852 121 221
Q ss_pred ---ceeecceE-----EEEECCC--cc--eEEEe-----CCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHH
Q psy5261 140 ---LTPIRGQV-----IKVWAPW--LS--HFYYL-----DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERC 202 (267)
Q Consensus 140 ---l~p~rg~~-----~~~~~p~--~~--~~v~~-----~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~ 202 (267)
..+...++ +.++.+. .. ....+ ....+++|..++.+.+|-...... . ..+ ..+.+.+.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~-~-~~~--~~~~~~~~l 250 (453)
T 3atr_A 175 TEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGM-G-YPS--IHEYYKKYL 250 (453)
T ss_dssp GCCCCGGGEEEEEEEEEEESSCCTTTTEEEEECCTTTSTTSCEEEEEEETTEEEEEEEEESSS-C-CCC--HHHHHHHHH
T ss_pred ccCCCcccceeeeEEEEecCCCccCCCeEEEEECCCCCCCcEEEEEECCCCeEEEEEEecCCC-C-CCC--HHHHHHHHH
Confidence 12211111 1222221 11 12221 235678888777777776544321 1 112 223344444
Q ss_pred HhhCCCCCCCCceeeeccccCCCC-------C-eEEEeC--------CCchhhhccHHHHHHHHHHHHhhh
Q psy5261 203 YSLLPRLEEAPVLYEWCGLRPHRS-------L-VIHNYG--------HGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 203 ~~~~P~l~~~~~~~~w~G~rp~~p-------d-l~~~~G--------~gg~G~t~a~~~a~~la~li~~~l 257 (267)
.++.|.+...++...|.++.|... + ++ ..| +.|.|+.+|.-.|..+|+.+...+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l 320 (453)
T 3atr_A 251 DKYAPDVDKSKLLVKGGALVPTRRPLYTMAWNGII-VIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAF 320 (453)
T ss_dssp HHHCTTEEEEEEEEEEEEEEECSSCCSCSEETTEE-ECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhcCCCeEEeccceeccCCCCCCceecCCEE-EEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 455666655566677777666531 1 43 445 789999999999999999987654
No 25
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=97.61 E-value=0.00019 Score=63.13 Aligned_cols=173 Identities=16% Similarity=0.165 Sum_probs=104.6
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch--hhcC-CCCcee
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ--ALCR-DRKLTP 142 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~--~l~~-~~~l~p 142 (267)
..++-..+-..|++.+++.|++++. ++|+++... .++||.||-|.|.+|. ..+. ..+..+
T Consensus 97 ~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~g~~~~~~~ 176 (397)
T 3oz2_A 97 YVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILA 176 (397)
T ss_dssp EEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHTCGGGCCC
T ss_pred EEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccccHHHHHcCCCccccc
Confidence 3577788889999999999999987 567665321 2679999999999974 2221 212222
Q ss_pred ecceEEEEE----CCC--cce--EEE----eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCC
Q psy5261 143 IRGQVIKVW----APW--LSH--FYY----LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE 210 (267)
Q Consensus 143 ~rg~~~~~~----~p~--~~~--~v~----~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~ 210 (267)
......... ... ... ... .....+++|..++...+|-...... ..........++...+.+|.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~---~~~~~~~~~~l~~~~~~~~~l~ 253 (397)
T 3oz2_A 177 RNDIISALQYRMINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINW---IHNRFELKNYLDRFIENHPGLK 253 (397)
T ss_dssp GGGEEEEEEEEEESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTT---SCSHHHHHHHHHHHHHTCHHHH
T ss_pred ceeeeeeEEEEeeccccCcccceeeeeccCCCceEEEeecccceeEEEEeeccch---hhhhhhHHHHHHHHHHhCcccc
Confidence 222222111 111 111 111 1134567777776766664433322 2234455566666666677776
Q ss_pred CCCceeeeccccCCCCC--------eEEE-------eCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 211 EAPVLYEWCGLRPHRSL--------VIHN-------YGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 211 ~~~~~~~w~G~rp~~pd--------l~~~-------~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
.......+.|..|..+. ++++ ..++|.|+.+|...|..+|+.|...+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~ 316 (397)
T 3oz2_A 254 KGQDIQLVTGGVSVSKVKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIE 316 (397)
T ss_dssp TSEEEEEEEEEEECCCCCSCCEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeeeeccccccCcccceeeeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 66667777776655431 4443 235789999999999999988876653
No 26
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=97.42 E-value=0.00019 Score=67.82 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=98.2
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCchh---hcCCCCcee
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQA---LCRDRKLTP 142 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~~---l~~~~~l~p 142 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||.|+|.++.- +....+-..
T Consensus 123 ~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~ 202 (591)
T 3i3l_A 123 VQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQYDEF 202 (591)
T ss_dssp EECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGCHHHHHHTCEEEEEE
T ss_pred EEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcchhHHHcCCCCCCcc
Confidence 5789999999999999999999987 577766421 25799999999998842 211111111
Q ss_pred ecceEEEE--EC----C--CcceEE--E-eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCC--
Q psy5261 143 IRGQVIKV--WA----P--WLSHFY--Y-LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRL-- 209 (267)
Q Consensus 143 ~rg~~~~~--~~----p--~~~~~v--~-~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l-- 209 (267)
.++..+.. .. + ...... . .+...+++|..++.+.++-........ .......+.+++...+.+|.+
T Consensus 203 ~~~~av~~~~~~~~~~~~~~~~~~~~~~~~~G~~w~iPl~~~~~sv~~~~~~~~~~-~l~~~~~~~~~~~l~~~~p~l~~ 281 (591)
T 3i3l_A 203 YRNFAVWSYFKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLVVDRSKSA-EVREQGADAFYSSTLAKCAKAMD 281 (591)
T ss_dssp EEEEEEEEEEECCCSCCSTTTTCEEEEEETTEEEEEEECSSSEEEEEEEEEGGGHH-HHHHHCHHHHHHHHHTTCHHHHH
T ss_pred ccceEEEEEEecCccccCCCCCceEEEEcCCcEEEEEECCCCeEEEEEEcCHHHHh-hhccCCHHHHHHHHHHhCHHHHH
Confidence 22232222 21 1 111111 1 335678889887777776554332111 000111223333333333321
Q ss_pred --------CCCCceeeecccc-CCCCC-eEE-------EeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 210 --------EEAPVLYEWCGLR-PHRSL-VIH-------NYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 210 --------~~~~~~~~w~G~r-p~~pd-l~~-------~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
........|.+.. +...+ +++ ...+.|.|+.++...|..+|+.|...+
T Consensus 282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l 346 (591)
T 3i3l_A 282 ILGGAEQVDEVRIVQDWSYDTEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRIT 346 (591)
T ss_dssp HHTTCEECSCCEEEEEEEEEESCSEETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCccccCceEecccccchhhcccCCEEEEccccccCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 1233455676633 22233 322 233578999999999999999887654
No 27
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=97.39 E-value=0.0022 Score=59.67 Aligned_cols=165 Identities=10% Similarity=-0.019 Sum_probs=94.4
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc--------------ccCCCEEEEccCcCchhhcC--CCCc------
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL--------------ESEFDFVFNCAGLGAQALCR--DRKL------ 140 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l~~--~~~l------ 140 (267)
+.+++..+...|.+.+++.|++++..+|++++.. .++||.||.|+|.++..+.. ..+.
T Consensus 160 ~~i~~~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~ 239 (538)
T 2aqj_A 160 WHFDAHLVADFLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDMSDY 239 (538)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEECTTT
T ss_pred EEEeHHHHHHHHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCccccccc
Confidence 7899999999999999999999987666665321 26899999999999865332 1221
Q ss_pred eeecc-eEEEEECCC----c-ceE-E-E-eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHH-HHHHHHHHhhCCCCC
Q psy5261 141 TPIRG-QVIKVWAPW----L-SHF-Y-Y-LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDT-ASILERCYSLLPRLE 210 (267)
Q Consensus 141 ~p~rg-~~~~~~~p~----~-~~~-v-~-~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~-~~l~~~~~~~~P~l~ 210 (267)
.|... ..+.+..+. + ... . . .....+++|..+ +..+|-... ..+ .+++.. +.+.+.... +.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~-~~~~g~v~~-~~~---~~~~~~~~~l~~~~~~--~~~~ 312 (538)
T 2aqj_A 240 LLCDSAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLG-RFGSGYVFS-SHF---TSRDQATADFLKLWGL--SDNQ 312 (538)
T ss_dssp CCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEETT-EEEEEEEEC-TTT---SCHHHHHHHHHHHHTC--CTTC
T ss_pred cccceEEEEecccCCcccCCCCceeeeecCCceEEEecCCC-ceEEEEEEc-CCC---CChHHHHHHHHHHhcC--CCCC
Confidence 12211 222232110 1 111 1 2 223567778766 445544332 111 233333 333333221 2233
Q ss_pred CCCceeeeccccCCC-CC-eEE-------EeCCCchhhhccHHHHHHHHHHHH
Q psy5261 211 EAPVLYEWCGLRPHR-SL-VIH-------NYGHGGYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 211 ~~~~~~~w~G~rp~~-pd-l~~-------~~G~gg~G~t~a~~~a~~la~li~ 254 (267)
+......|.|.++.. .+ +++ ...++|.|+.++...|..+++.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~ 365 (538)
T 2aqj_A 313 PLNQIKFRVGRNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFP 365 (538)
T ss_dssp CCEEEECCCEEESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CceEEeeccccccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhh
Confidence 344556667765532 23 332 233578999999999999988765
No 28
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=96.97 E-value=0.0047 Score=55.10 Aligned_cols=167 Identities=16% Similarity=0.076 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch-hhcCCC-----C--------
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ-ALCRDR-----K-------- 139 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~-~l~~~~-----~-------- 139 (267)
...++.+|++.++++|++|+. ++|++|... .++||.||+|+|+|.- .|+++. +
T Consensus 195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~ 274 (425)
T 3ka7_A 195 CKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIADDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVG 274 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEECCEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHhh
Confidence 366899999999999999997 688887532 2579999999999853 555421 1
Q ss_pred -ceeecceEEEE--ECCCcc-e-EEEe-C-C-e-EEEEec-------CCCeEEEcceeecCCCCC-CCCHHHHHHHHHHH
Q psy5261 140 -LTPIRGQVIKV--WAPWLS-H-FYYL-D-Y-D-VYVIPH-------SNGAVTLGGCRHYDSYSR-DISRHDTASILERC 202 (267)
Q Consensus 140 -l~p~rg~~~~~--~~p~~~-~-~v~~-~-~-~-~y~~p~-------~~g~l~lGg~~~~~~~~~-~~~~~~~~~l~~~~ 202 (267)
+.+..+..+.+ +.+... + .++. + . - .+..+. +.|..++-.... ..++. ..+++..+.+++.+
T Consensus 275 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l 353 (425)
T 3ka7_A 275 TLQPSAGIKICLAADEPLVGHTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQY-VAPENVKNLESEIEMGLEDL 353 (425)
T ss_dssp HCCCBEEEEEEEEESSCSSCSSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEE-ECGGGGGGHHHHHHHHHHHH
T ss_pred CcCCCceEEEEeecCCCccCcCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEec-cccccccchHHHHHHHHHHH
Confidence 12222222222 222111 1 2221 1 1 1 122221 123333322211 12221 12245578899999
Q ss_pred HhhCCCCCCCC--ceeeeccccCC------------CC--CeEEEeC----CCchhhhccHHHHHHHHHHHHh
Q psy5261 203 YSLLPRLEEAP--VLYEWCGLRPH------------RS--LVIHNYG----HGGYGVTTAPGTSRYAVQLVKQ 255 (267)
Q Consensus 203 ~~~~P~l~~~~--~~~~w~G~rp~------------~p--dl~~~~G----~gg~G~t~a~~~a~~la~li~~ 255 (267)
.++||.. ..+ .+..|-+-.|. +| +||++.. -||.|+--+..+|+..++.|.|
T Consensus 354 ~~~~p~~-~~~~~~v~~~~~~~P~~~~~~~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~~ 425 (425)
T 3ka7_A 354 KEIFPGK-RYEVLLIQSYHDEWPVNRAASGTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVLG 425 (425)
T ss_dssp HHHSTTC-CEEEEEEEEEBTTBCSBSSCTTCCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC---
T ss_pred HHhCCCC-ceEEEEEEEECCCccccccccCCCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhhC
Confidence 9999973 222 24566654443 12 2888732 2368888888889998888764
No 29
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=96.91 E-value=0.0021 Score=58.35 Aligned_cols=165 Identities=15% Similarity=0.001 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCc-hhhcC-----------CCCcee
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA-QALCR-----------DRKLTP 142 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s-~~l~~-----------~~~l~p 142 (267)
..++.+|++.++++|++|+. ++|++|+.. .++||+||+|++++. ..|++ .++..+
T Consensus 234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~~~~ad~vv~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~ 313 (477)
T 3nks_A 234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAAPLARALSAITAVS 313 (477)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSCEEEESEEEECSCHHHHHHHSCGGGHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCeEEEcCEEEECCCHHHHHHhccccCHHHHHHHhcCCCCc
Confidence 47899999999999999998 688888532 247999999999985 34443 133334
Q ss_pred ecceEEEEECCCcceEEEeCCeEEEEecC----------------------CCeE---EEcceeec---CCCCCCCCHHH
Q psy5261 143 IRGQVIKVWAPWLSHFYYLDYDVYVIPHS----------------------NGAV---TLGGCRHY---DSYSRDISRHD 194 (267)
Q Consensus 143 ~rg~~~~~~~p~~~~~v~~~~~~y~~p~~----------------------~g~l---~lGg~~~~---~~~~~~~~~~~ 194 (267)
+--..+.++.+.... +...|++|.. +..+ .+||.... .......+++.
T Consensus 314 ~~~v~l~~~~~~~~~----~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~ 389 (477)
T 3nks_A 314 VAVVNLQYQGAHLPV----QGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELF 389 (477)
T ss_dssp EEEEEEEETTCCCSS----CSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHH
T ss_pred EEEEEEEECCCCCCC----CCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHHH
Confidence 332333333332110 0112333321 1121 12332110 00001133455
Q ss_pred HHHHHHHHHhhCCCCCCCC--ceeeeccccC-CCCC------------------eEEEeC-CCchhhhccHHHHHHHHHH
Q psy5261 195 TASILERCYSLLPRLEEAP--VLYEWCGLRP-HRSL------------------VIHNYG-HGGYGVTTAPGTSRYAVQL 252 (267)
Q Consensus 195 ~~~l~~~~~~~~P~l~~~~--~~~~w~G~rp-~~pd------------------l~~~~G-~gg~G~t~a~~~a~~la~l 252 (267)
.+.+++.+.++|+...... .+..|-.-.| ++++ ++++.. +.|.|+--+...|+.+|+.
T Consensus 390 ~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv~~a~~sg~~aA~~ 469 (477)
T 3nks_A 390 QQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVS 469 (477)
T ss_dssp HHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcHHHHHHHHHHHHHH
Confidence 6678888888875322111 1334543333 2332 666632 7788999999999999999
Q ss_pred HHhh
Q psy5261 253 VKQA 256 (267)
Q Consensus 253 i~~~ 256 (267)
|.+.
T Consensus 470 il~~ 473 (477)
T 3nks_A 470 VLGT 473 (477)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8764
No 30
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=96.83 E-value=0.0065 Score=55.17 Aligned_cols=166 Identities=10% Similarity=0.038 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCc-hhhcCC--------CCceeecceE
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGA-QALCRD--------RKLTPIRGQV 147 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s-~~l~~~--------~~l~p~rg~~ 147 (267)
.++..|++.+.+ ++|+. ++|++|+.. .++||+||+|++++. ..|+.+ ++..|+....
T Consensus 237 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g~~~ad~vV~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~v~ 314 (475)
T 3lov_A 237 SLIERLEEVLER--SEIRLETPLLAISREDGRYRLKTDHGPEYADYVLLTIPHPQVVQLLPDAHLPELEQLTTHSTATVT 314 (475)
T ss_dssp HHHHHHHHHCSS--CEEESSCCCCEEEEETTEEEEECTTCCEEESEEEECSCHHHHHHHCTTSCCHHHHTCCEEEEEEEE
T ss_pred HHHHHHHhhccC--CEEEcCCeeeEEEEeCCEEEEEECCCeEECCEEEECCCHHHHHHHcCccCHHHHhcCCCCeEEEEE
Confidence 455666555433 67876 688887532 257999999999986 556543 3456666666
Q ss_pred EEEECCCcceEEEeCCeEEEEecCC-------------------CeEEEcceeec---CCCCCCCCHHHHHHHHHHHHhh
Q psy5261 148 IKVWAPWLSHFYYLDYDVYVIPHSN-------------------GAVTLGGCRHY---DSYSRDISRHDTASILERCYSL 205 (267)
Q Consensus 148 ~~~~~p~~~~~v~~~~~~y~~p~~~-------------------g~l~lGg~~~~---~~~~~~~~~~~~~~l~~~~~~~ 205 (267)
+.++.+. ... .+...|++++.+ +..++.+.... ..+....+++..+.+++.+.++
T Consensus 315 l~~~~~~-~~~--~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~ 391 (475)
T 3lov_A 315 MIFDQQQ-SLP--IEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKI 391 (475)
T ss_dssp EEEECCS-SCS--SSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECBTTBCGGGGSCHHHHHHHHHHHHHHH
T ss_pred EEECCcC-CCC--CCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCCCCCCcccCCCHHHHHHHHHHHHHHH
Confidence 6666543 100 000112222111 12223222211 0111223456677899999999
Q ss_pred CCCCCCC--CceeeeccccC-CCCC------------------eEEEe-CCCchhhhccHHHHHHHHHHHHhhhCC
Q psy5261 206 LPRLEEA--PVLYEWCGLRP-HRSL------------------VIHNY-GHGGYGVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 206 ~P~l~~~--~~~~~w~G~rp-~~pd------------------l~~~~-G~gg~G~t~a~~~a~~la~li~~~l~~ 259 (267)
|+.-... ..+..|..-.| ++++ ||++. .+.|.|+.-+..+|+.+|+.|.+.++.
T Consensus 392 ~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~a~~sG~~aA~~i~~~l~~ 467 (475)
T 3lov_A 392 CGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVASAKTMIESIELEQSH 467 (475)
T ss_dssp HSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHHHHHHHHHHHHHHHHTC--
T ss_pred hCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 8753211 13567775444 2222 77774 477789999999999999999988764
No 31
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=96.79 E-value=0.0064 Score=54.81 Aligned_cols=168 Identities=15% Similarity=0.096 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCc-hhhcCC---------CCceeec
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA-QALCRD---------RKLTPIR 144 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s-~~l~~~---------~~l~p~r 144 (267)
..++..|++.+.+ ++|+. ++|++|+.. .++||+||+|+.++. ..++.+ ++..|+.
T Consensus 235 ~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (470)
T 3i6d_A 235 QTLVEEIEKQLKL--TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSELPAISHLKNMHSTSVA 312 (470)
T ss_dssp HHHHHHHHHTCCS--EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHHHTTTSTTHHHHHTCEEEEEE
T ss_pred HHHHHHHHHhcCC--CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHHHcCCchhhHHHhcCCCCceE
Confidence 4566666655433 67776 578777532 257999999999985 445433 3344444
Q ss_pred ceEEEEECCCcc------eEEEe-CCe--E--EEE-----e--cCCCeEEEcceeecC---CCCCCCCHHHHHHHHHHHH
Q psy5261 145 GQVIKVWAPWLS------HFYYL-DYD--V--YVI-----P--HSNGAVTLGGCRHYD---SYSRDISRHDTASILERCY 203 (267)
Q Consensus 145 g~~~~~~~p~~~------~~v~~-~~~--~--y~~-----p--~~~g~l~lGg~~~~~---~~~~~~~~~~~~~l~~~~~ 203 (267)
-..+.++.|... ..+.. +.. . .+. + .+++..++.+..... .+....+++..+.+++.+.
T Consensus 313 ~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 392 (470)
T 3i6d_A 313 NVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLK 392 (470)
T ss_dssp EEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHG
T ss_pred EEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHH
Confidence 444455443211 11221 110 0 010 1 123333333222110 1112244566778999999
Q ss_pred hhCCCCCCCC--ceeeeccccC-CCC------------------CeEEEeC-CCchhhhccHHHHHHHHHHHHhhh
Q psy5261 204 SLLPRLEEAP--VLYEWCGLRP-HRS------------------LVIHNYG-HGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 204 ~~~P~l~~~~--~~~~w~G~rp-~~p------------------dl~~~~G-~gg~G~t~a~~~a~~la~li~~~l 257 (267)
++||...+.. ....|..-.| +++ .|+++.. +.|.|+--+...|+.+|+.|...|
T Consensus 393 ~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv~~a~~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 393 KVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGKAAVSDALTYL 468 (470)
T ss_dssp GGSCCCSCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998643322 3567876443 222 2877755 678888889999999999988765
No 32
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=96.74 E-value=0.0038 Score=58.62 Aligned_cols=172 Identities=10% Similarity=0.055 Sum_probs=89.1
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch--hhcC-CCCceee
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ--ALCR-DRKLTPI 143 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~--~l~~-~~~l~p~ 143 (267)
..++...+...|.+.+++.|++|+. ++|++++.. .++||.||.|.|.+|. +.+. +.+-.+.
T Consensus 143 ~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lGi~~~~~~~ 222 (570)
T 3fmw_A 143 GLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAADRFPGTEA 222 (570)
T ss_dssp BCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSCHHHHHTTCCCCCCCC
T ss_pred EEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchHHHHcCCCCcccee
Confidence 4588889999999999989999987 588776432 2579999999999983 2232 3333333
Q ss_pred cceEEEEE--CC--CcceEE-EeCC-eEEE-EecCCCeE-EEcceeecC---CCCCCCCHHHHHHHHHHHHhhCCCCCCC
Q psy5261 144 RGQVIKVW--AP--WLSHFY-YLDY-DVYV-IPHSNGAV-TLGGCRHYD---SYSRDISRHDTASILERCYSLLPRLEEA 212 (267)
Q Consensus 144 rg~~~~~~--~p--~~~~~v-~~~~-~~y~-~p~~~g~l-~lGg~~~~~---~~~~~~~~~~~~~l~~~~~~~~P~l~~~ 212 (267)
....+... .+ .....+ .... ..++ +|..++.. .+.-+.... ......+.+ ++.+.+.++++..-..
T Consensus 223 ~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 299 (570)
T 3fmw_A 223 TVRALIGYVTTPEREVPRRWERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLE---DLGAAVARVRGTPLTL 299 (570)
T ss_dssp CEEEEEEECCCCSCSSCCCCCCCCSSCEEECCCC------CEEEEEESCC-----CCCCHH---HHHHHTTSSSSCCCCC
T ss_pred eeEEEEEEEEecCCCcceEEEecCCEEEEEEeecCCCeEEEEEEEeCCCCccccccCCCHH---HHHHHHHHHhhccccc
Confidence 32333322 21 111111 1122 2333 47776644 333322211 122233443 4455555566532111
Q ss_pred CceeeeccccCCCC--------C-eEE-------EeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 213 PVLYEWCGLRPHRS--------L-VIH-------NYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 213 ~~~~~w~G~rp~~p--------d-l~~-------~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
.....|....|... + +++ ..-++|.|+.++.--|..+++.|...+
T Consensus 300 ~~~~~~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~ 360 (570)
T 3fmw_A 300 TEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARV 360 (570)
T ss_dssp CSCCEEEEEECCCCEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeeEEeecccccccccccCCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHHH
Confidence 11122544444322 1 332 344678899988888888777765543
No 33
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=96.57 E-value=0.015 Score=53.72 Aligned_cols=167 Identities=14% Similarity=-0.004 Sum_probs=89.2
Q ss_pred eeeehHHHHHHHHHHHHh-CCcEEEEEeeCCcccc--------------ccCCCEEEEccCcCchhhcCC--CCc-----
Q psy5261 83 LVIENSDFLPWAMKRVSK-QGGKFRRGTVSSFSGL--------------ESEFDFVFNCAGLGAQALCRD--RKL----- 140 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~-~G~~~~~~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l~~~--~~l----- 140 (267)
..++...+...|.+.+++ .|++++..+|++++.. .++||.||.|+|.++..+... .+.
T Consensus 170 ~~~~r~~l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~~~~~~~ 249 (526)
T 2pyx_A 170 YHLNAAKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVPFLSQKS 249 (526)
T ss_dssp EEECHHHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCCEEECHH
T ss_pred EEEcHHHHHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCcccccc
Confidence 678999999999999998 8999987556665321 257999999999998643322 222
Q ss_pred -eee-cceEEEEECC----Cc-ceE-E-E-eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHH-HHHHHHHHHhhCCCC
Q psy5261 141 -TPI-RGQVIKVWAP----WL-SHF-Y-Y-LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHD-TASILERCYSLLPRL 209 (267)
Q Consensus 141 -~p~-rg~~~~~~~p----~~-~~~-v-~-~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~-~~~l~~~~~~~~P~l 209 (267)
.|. ++..+.+..+ .. ... + . .....+++|..+ +..+|-.... .+ .+++. .+.+.+.+...-|.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~-~~~~~~v~~~-~~---~~~~~~~~~l~~~l~~~~~~l 324 (526)
T 2pyx_A 250 VLFNDRALAIQVPYSDANSPIASCTHSTAQPNGWIWDIGLPT-RKGVGYVYSS-SH---TNDIDAQKTLFNYLGVDGAAA 324 (526)
T ss_dssp HHCCCEEEEEEEECSSTTCCCCSSEEEEEETTEEEEEEECSS-EEEEEEEECT-TT---CCHHHHHHHHHHHHTCCHHHH
T ss_pred cccCccEEEEEeeccCCCCCCCCceeEEecCCCeEEEeeCCC-ceEEEEEecC-CC---CChHHHHHHHHHHHHhcCccc
Confidence 122 2222233321 11 111 1 1 223456777655 4333322111 11 12222 233333331110111
Q ss_pred --CCCCceeeeccccCCCC-C-eEE-------EeCCCchhhhccHHHHHHHHHHHH
Q psy5261 210 --EEAPVLYEWCGLRPHRS-L-VIH-------NYGHGGYGVTTAPGTSRYAVQLVK 254 (267)
Q Consensus 210 --~~~~~~~~w~G~rp~~p-d-l~~-------~~G~gg~G~t~a~~~a~~la~li~ 254 (267)
.+......+.+.++... + +++ ..-++|.|+.++...|..+|+.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~ 380 (526)
T 2pyx_A 325 DKLEPRQLAINPGYRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLP 380 (526)
T ss_dssp HHCCCEEEECCCEEESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCC
T ss_pred ccCCceEEecccCccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhh
Confidence 12223344455444321 2 332 234589999999999999988764
No 34
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=96.46 E-value=0.12 Score=47.53 Aligned_cols=170 Identities=13% Similarity=0.053 Sum_probs=94.2
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch--hhcC-CCCcee-
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ--ALCR-DRKLTP- 142 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~--~l~~-~~~l~p- 142 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||.|.|.+|. +.+. +.+-.+
T Consensus 102 ~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~ 181 (499)
T 2qa2_A 102 KAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSA 181 (499)
T ss_dssp EEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCHHHHHTTCCCCEECC
T ss_pred EecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccHHHHHcCCCCCCCCC
Confidence 5677888999999999999999998 688877432 2579999999999984 3332 222111
Q ss_pred -ecceEEEEECCCc-c--eEEEe-CCeEEEEecCCCeEEEcceeec---CCCCCCCCHHHHHHHHHHHHhhCCC-CCCCC
Q psy5261 143 -IRGQVIKVWAPWL-S--HFYYL-DYDVYVIPHSNGAVTLGGCRHY---DSYSRDISRHDTASILERCYSLLPR-LEEAP 213 (267)
Q Consensus 143 -~rg~~~~~~~p~~-~--~~v~~-~~~~y~~p~~~g~l~lGg~~~~---~~~~~~~~~~~~~~l~~~~~~~~P~-l~~~~ 213 (267)
.......++.+.. . ..... ....+++|..+|.+.+.-.... ..+....+.+.+... +.++++. +...
T Consensus 182 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~- 257 (499)
T 2qa2_A 182 SREMFLADIRGCEITPRPIGETVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAA---WQRLTGQDISHG- 257 (499)
T ss_dssp CCCEEEEEEESCCCCCEEEEEEETTEEEEEEECSSSCEEEEEEETTCCCCCCSSSCCHHHHHHH---HHHHHSCCCTTC-
T ss_pred ccEEEEEEEEECCCCcceEEEECCCeEEEEEEcCCCEEEEEEEecCCCCccccCCCCHHHHHHH---HHHHhCCCCCcc-
Confidence 2233333433211 1 11222 2345677877776665533211 112233455554443 3444432 2111
Q ss_pred ceeeeccccCCC--------CC-eEE-------EeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 214 VLYEWCGLRPHR--------SL-VIH-------NYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 214 ~~~~w~G~rp~~--------pd-l~~-------~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
...|....+.. .+ +++ ..-++|.|+.++.--|..++..+...+
T Consensus 258 -~~~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l 316 (499)
T 2qa2_A 258 -EPVWVSAFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVV 316 (499)
T ss_dssp -EEEEEEEECCCEEECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -ceeEEEEEeCCcEEcccccCCCEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHH
Confidence 12343322221 11 333 345788999998888877777666544
No 35
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=96.42 E-value=0.0038 Score=57.63 Aligned_cols=176 Identities=11% Similarity=0.066 Sum_probs=92.4
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCchhhcC-CCCc---
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQALCR-DRKL--- 140 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~~l~~-~~~l--- 140 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||.|+|.++.-.-. ..+.
T Consensus 106 ~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~vr~~lg~~~~~~ 185 (512)
T 3e1t_A 106 YQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSR 185 (512)
T ss_dssp EBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCSSGGGTCCEEECS
T ss_pred eEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchHHHHHcCCCccCc
Confidence 5688899999999999999999987 577665321 25699999999999742210 1111
Q ss_pred -eeecceEEEEEC----C--Ccce-E-E-EeCCeEEEEecCCCeEEEcceeecCCCC--CCCCHHHHHHHHHH---HHhh
Q psy5261 141 -TPIRGQVIKVWA----P--WLSH-F-Y-YLDYDVYVIPHSNGAVTLGGCRHYDSYS--RDISRHDTASILER---CYSL 205 (267)
Q Consensus 141 -~p~rg~~~~~~~----p--~~~~-~-v-~~~~~~y~~p~~~g~l~lGg~~~~~~~~--~~~~~~~~~~l~~~---~~~~ 205 (267)
.........++. | .... . . ......+++|..++++.+|-.......+ .....+..+.+++. ..++
T Consensus 186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Pl~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 265 (512)
T 3e1t_A 186 FFQNVALYGYFENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEY 265 (512)
T ss_dssp TTCEEEEEEEEESCCCCSTTCTTSEEEEEETTEEEEEEECSSSEEEEEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHH
T ss_pred hhcceEEEEEecCCccCCCCCcCceEEEEeCCceEEEEEeCCCeEEEEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHH
Confidence 111111122221 1 1111 1 1 1335678889888777776654332111 11223333333332 1122
Q ss_pred CCCCC---C--CCceeeecc---ccC-C-CCCeE-------EEeCCCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 206 LPRLE---E--APVLYEWCG---LRP-H-RSLVI-------HNYGHGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 206 ~P~l~---~--~~~~~~w~G---~rp-~-~pdl~-------~~~G~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
+.... . ......+.+ ..+ . .+.++ ...-+.|.|+.++.-.|..+++.|...+.
T Consensus 266 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~ 335 (512)
T 3e1t_A 266 LAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLA 335 (512)
T ss_dssp HTTCEECCSSTTSSCEEEESCCEEESCSBCSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCccccccccccceeeccccccccccccCCEEEEechhhcCCCccccCHHHHHHHHHHHHHHHHHHHc
Confidence 21110 0 000111111 111 1 12222 22346789999999999999988876553
No 36
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=96.23 E-value=0.13 Score=47.28 Aligned_cols=170 Identities=18% Similarity=0.107 Sum_probs=91.6
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch--hhcC-CCCcee-
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ--ALCR-DRKLTP- 142 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~--~l~~-~~~l~p- 142 (267)
..++...+...|.+.+++.|++++. ++|++++.. .++||.||.|.|.+|. +.+. +.+-.+
T Consensus 101 ~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~ 180 (500)
T 2qa1_A 101 KTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAA 180 (500)
T ss_dssp EEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCHHHHHTTCCCCEECC
T ss_pred eecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchHHHHHcCCCcCCCcc
Confidence 4567788889999999999999988 688877531 2579999999999984 2332 222111
Q ss_pred -ecceEEEEECCCc-c--eEEEe-CCeEEEEecCCCeEEEcceeecC---CCCCCCCHHHHHHHHHHHHhhCCC-CCCCC
Q psy5261 143 -IRGQVIKVWAPWL-S--HFYYL-DYDVYVIPHSNGAVTLGGCRHYD---SYSRDISRHDTASILERCYSLLPR-LEEAP 213 (267)
Q Consensus 143 -~rg~~~~~~~p~~-~--~~v~~-~~~~y~~p~~~g~l~lGg~~~~~---~~~~~~~~~~~~~l~~~~~~~~P~-l~~~~ 213 (267)
.......++.+.. . ..... ....+++|..++.+.+.-..... .+....+.+.+... +.++++. +...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~ 257 (500)
T 2qa1_A 181 TMEMYLADIKGVELQPRMIGETLPGGMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADA---WKRLTGDDIAHAE 257 (500)
T ss_dssp CCEEEEEEEESCCCCCEEEEEEETTEEEEEEEETTTEEEEEEEETTCCC-----CCCHHHHHHH---HHHHHSCCCTTSE
T ss_pred ceEEEEEEEEeCCCCCceEEEECCCcEEEEEEcCCCEEEEEEEcCCCCCccccCCCCHHHHHHH---HHHhcCCCCCccc
Confidence 1233333332211 1 11222 23456778777766665332111 11223455554443 3444432 21111
Q ss_pred ceeeeccccCC--------CCC-eEE-------EeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 214 VLYEWCGLRPH--------RSL-VIH-------NYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 214 ~~~~w~G~rp~--------~pd-l~~-------~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
..|....+. ..+ +++ ..-++|.|+.++.--|..++..+...+
T Consensus 258 --~~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~ 315 (500)
T 2qa1_A 258 --PVWVSAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVV 315 (500)
T ss_dssp --EEEEEEEECCEEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --eeEEEEeccCcEEccccccCCEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHH
Confidence 123322221 112 333 344778899988887777776665544
No 37
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=96.20 E-value=0.025 Score=53.10 Aligned_cols=173 Identities=13% Similarity=0.004 Sum_probs=93.6
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc-----------------------------cccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG-----------------------------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~-----------------------------~~~~ad~VV~aaG~~s~ 132 (267)
..++...+.++|.+.+++.|++|+. ++|+++.. ..++||.||.|+|.++.
T Consensus 139 ~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 139 YVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred EEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence 3566678999999999999999986 45544321 12569999999999984
Q ss_pred ---hhcC----CCCcee---ecceEEEEECCC--c--c---eEEE---e---CCeEEEEecC--CCeEEEcceeecCCCC
Q psy5261 133 ---ALCR----DRKLTP---IRGQVIKVWAPW--L--S---HFYY---L---DYDVYVIPHS--NGAVTLGGCRHYDSYS 187 (267)
Q Consensus 133 ---~l~~----~~~l~p---~rg~~~~~~~p~--~--~---~~v~---~---~~~~y~~p~~--~g~l~lGg~~~~~~~~ 187 (267)
.+.. +.+..| .-|+...+..+. . . +.+- + ..+.+++|.. ++.+.+|........+
T Consensus 219 vr~~l~~~~gl~~~~~p~~~g~g~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~ 298 (584)
T 2gmh_A 219 LAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKKWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLLALGFVVGLDYQN 298 (584)
T ss_dssp HHHHHHHHTTTTTTSCCCCEEEEEEEEEECCGGGCCTTEEEEEEETTSCTTSCEEEEEEECCSSSCEEEEEEEEETTCCC
T ss_pred HHHHHHHHhCCCCCCCchhHHhhhhhheecCcccccCCeEEEEEeccccCCcCCceEEEEecCCCCeEEEEEEEecCccc
Confidence 4421 112222 123333333221 1 1 1111 0 1345777876 6788888776553332
Q ss_pred CCCC-HHHHHHHHH--HHHhhCCCCCCCCcee------eeccccCCC----CCeEEE-------eCCCchhhhccHHHHH
Q psy5261 188 RDIS-RHDTASILE--RCYSLLPRLEEAPVLY------EWCGLRPHR----SLVIHN-------YGHGGYGVTTAPGTSR 247 (267)
Q Consensus 188 ~~~~-~~~~~~l~~--~~~~~~P~l~~~~~~~------~w~G~rp~~----pdl~~~-------~G~gg~G~t~a~~~a~ 247 (267)
...+ .+.+++.+. .+.+++ ...++.. .+.|+++.. +.+++. ..+.|.|+.+|...|.
T Consensus 299 ~~~~~~~~l~~~~~~p~i~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~ 375 (584)
T 2gmh_A 299 PYLSPFREFQRWKHHPSIKPTL---EGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGT 375 (584)
T ss_dssp TTCCHHHHHHHHTTSTTTHHHH---TTCEEEEEEEEEEECCGGGGCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHH
T ss_pred ccCChHHHHHHHHhChHHHHHh---CCCeEEEecceEccCCCcccCCccccCCEEEEcccccccCccccccHHHHHHHHH
Confidence 2222 222322211 111122 1122221 112333221 114432 3457899999999999
Q ss_pred HHHHHHHhhhC
Q psy5261 248 YAVQLVKQALD 258 (267)
Q Consensus 248 ~la~li~~~l~ 258 (267)
.+|+.|...+.
T Consensus 376 ~LA~~L~~~~~ 386 (584)
T 2gmh_A 376 LAAESIFNQLT 386 (584)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 38
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=95.92 E-value=0.024 Score=50.34 Aligned_cols=171 Identities=9% Similarity=-0.078 Sum_probs=89.7
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch--hhc-CC--CCce-ee
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ--ALC-RD--RKLT-PI 143 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~--~l~-~~--~~l~-p~ 143 (267)
..++...+...|.+.+++ ++++. ++|++++.. .++||.||.|.|.+|. ..+ +. .+.+ ..
T Consensus 122 ~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~ 199 (407)
T 3rp8_A 122 CPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGY 199 (407)
T ss_dssp EEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCSSHHHHHSSCCCCEEEEE
T ss_pred EEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChHHHHHhcCCCCCCcccCc
Confidence 578889999999999877 77777 578777532 2579999999999974 222 32 1111 11
Q ss_pred cceEEEEECC----Ccce--EEE-eCCeEEEEecCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCCCC----C
Q psy5261 144 RGQVIKVWAP----WLSH--FYY-LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEE----A 212 (267)
Q Consensus 144 rg~~~~~~~p----~~~~--~v~-~~~~~y~~p~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~----~ 212 (267)
..+...++.+ .... ... .+...+++|..++++.+...............+..+.+.+....+.|.+.. .
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 279 (407)
T 3rp8_A 200 VNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAAL 279 (407)
T ss_dssp EEEEEEEECCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHHS
T ss_pred EEEEEEEecccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCCcCCCCCchhHHHHHHHHhcCCChHHHHHHHcC
Confidence 1222233322 1111 122 334667888888777665544322221111122233333333222221100 0
Q ss_pred Cce-eeeccccCCCC------C-eEEE-------eCCCchhhhccHHHHHHHHHHHHh
Q psy5261 213 PVL-YEWCGLRPHRS------L-VIHN-------YGHGGYGVTTAPGTSRYAVQLVKQ 255 (267)
Q Consensus 213 ~~~-~~w~G~rp~~p------d-l~~~-------~G~gg~G~t~a~~~a~~la~li~~ 255 (267)
... ..+..++|..+ + +++. .-++|.|+.+|.--|..+++.|..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~ 337 (407)
T 3rp8_A 280 DPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQ 337 (407)
T ss_dssp CGGGCEEEEEEECCCCSCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHS
T ss_pred CccceeEEeeEecCCCCceecCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 000 01122222221 1 3332 235689999999999999988863
No 39
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=95.62 E-value=0.27 Score=43.13 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=92.3
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccccc-cCCCEEEEccCcCch--hhcC--CCCceeecceEEEEEC-CCc
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGLE-SEFDFVFNCAGLGAQ--ALCR--DRKLTPIRGQVIKVWA-PWL 155 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~~-~~ad~VV~aaG~~s~--~l~~--~~~l~p~rg~~~~~~~-p~~ 155 (267)
..++-..+...|.+.+++.|++++. ++|++++... ++||.||.|.|.+|. .+.+ ..+..+..++...... +..
T Consensus 93 ~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~ad~vV~AdG~~S~R~~l~~~~g~~~~~~~~~~~~~~~~~~~ 172 (381)
T 3c4a_A 93 CGVERRGLVHALRDKCRSQGIAIRFESPLLEHGELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGRNKYIWYGTSQLF 172 (381)
T ss_dssp EEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGCCGGGCSEEEECCGGGGGTCCSSGGGCCCCEEEEEEEEEEEESSCC
T ss_pred eeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhcccccCCEEEECCCCCchHHhhhhhcCCCcccCCccEEEEecCCCC
Confidence 3577788999999999999999998 6899986542 689999999999985 2221 2222232344443322 111
Q ss_pred c--eEEE--eCCe---EEEEecCCCeEEEcceeec-----CCCCCCCCHH-HHHHHHHHHHhhCCCCCCCCcee-eecc-
Q psy5261 156 S--HFYY--LDYD---VYVIPHSNGAVTLGGCRHY-----DSYSRDISRH-DTASILERCYSLLPRLEEAPVLY-EWCG- 220 (267)
Q Consensus 156 ~--~~v~--~~~~---~y~~p~~~g~l~lGg~~~~-----~~~~~~~~~~-~~~~l~~~~~~~~P~l~~~~~~~-~w~G- 220 (267)
. .... .+.+ .+++|..++...+.-.... .++. ..+.+ ..+.+.+......|...-..... .|.=
T Consensus 173 ~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 251 (381)
T 3c4a_A 173 DQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLG-EMSEEASAEYVAKVFQAELGGHGLVSQPGLGWRNF 251 (381)
T ss_dssp SSEEEEEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHHTTSS-SSCHHHHHHHHHHHTHHHHTTCCCBCCTTTCSEEE
T ss_pred CcceeeEeeCCCcEEEEEEEEecCCeEEEEEECCccccccCCcc-cCChHHHHHHHHHHhcccCCCchhhcCCCcceeee
Confidence 1 1111 1222 1356766555433322111 1221 23333 34455555555544321111001 2221
Q ss_pred -ccCCC---CC-eEEE-------eCCCchhhhccHHHHHHHHHHHHh
Q psy5261 221 -LRPHR---SL-VIHN-------YGHGGYGVTTAPGTSRYAVQLVKQ 255 (267)
Q Consensus 221 -~rp~~---pd-l~~~-------~G~gg~G~t~a~~~a~~la~li~~ 255 (267)
..+.. .+ +++. .-+.|.|+.+|.--|..+|+.+..
T Consensus 252 ~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~ 298 (381)
T 3c4a_A 252 MTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCT 298 (381)
T ss_dssp EECCCSCSEETTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcccCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhc
Confidence 11111 11 3332 235688999999999998888754
No 40
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=95.48 E-value=0.12 Score=45.98 Aligned_cols=163 Identities=12% Similarity=0.047 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------ccCCCEEEEccCcCc-hhhcC--CCC---------ceee
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------ESEFDFVFNCAGLGA-QALCR--DRK---------LTPI 143 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------~~~ad~VV~aaG~~s-~~l~~--~~~---------l~p~ 143 (267)
+..++.+|++.++++|++|+. ++|++|+.. .++||.||+|+|++. ..|++ ..| +.+.
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 267 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPS 267 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCC
Confidence 578899999999999999997 688887542 257999999999985 24443 122 2333
Q ss_pred cceEEEEE--CCCc-ce-EEEeCCe---EEEEe-------cCCCeEEEcceeecCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy5261 144 RGQVIKVW--APWL-SH-FYYLDYD---VYVIP-------HSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRL 209 (267)
Q Consensus 144 rg~~~~~~--~p~~-~~-~v~~~~~---~y~~p-------~~~g~l~lGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l 209 (267)
....+.+. .+.. .+ .++..+. ....+ .++|...+........ ..+++..+.+++.+.+++|..
T Consensus 268 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~p~~ap~G~~~~~~~~~~~~---~~~~~~~~~~~~~L~~~~p~~ 344 (421)
T 3nrn_A 268 EGIKFNLAVPGEPRIGNTIVFTPGLMINGFNEPSALDKSLAREGYTLIMAHMALKN---GNVKKAIEKGWEELLEIFPEG 344 (421)
T ss_dssp CEEEEEEEEESSCSSCSSEEECTTSSSCEEECGGGTCGGGSCTTEEEEEEEEECTT---CCHHHHHHHHHHHHHHHCTTC
T ss_pred ceEEEEEEEcCCcccCCeEEEcCCcceeeEeccCCCCCCcCCCCceEEEEEEeecc---ccHHHHHHHHHHHHHHHcCCC
Confidence 33333332 2211 11 2221100 01111 0123322222221111 111355788999999999921
Q ss_pred CCCCceeeeccccCCC------------CCeEEEeCC-Cch-hh--hccHHHHHHHHHHH
Q psy5261 210 EEAPVLYEWCGLRPHR------------SLVIHNYGH-GGY-GV--TTAPGTSRYAVQLV 253 (267)
Q Consensus 210 ~~~~~~~~w~G~rp~~------------pdl~~~~G~-gg~-G~--t~a~~~a~~la~li 253 (267)
+....+.|..-.|.. |+||++..+ .+. |+ --+..+|+.+|+.|
T Consensus 345 -~~~~~~~~~~~~p~~~~~~~~~~~~~~~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 345 -EPLLAQVYRDGNPVNRTRAGLHIEWPLNEVLVVGDGYRPPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp -EEEEEEEC-------------CCCCCCSSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred -eEEEeeeccCCCCcccccCCCCCCCCCCcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence 111234454422221 458877332 122 34 67778888888888
No 41
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=94.43 E-value=0.47 Score=43.66 Aligned_cols=50 Identities=16% Similarity=0.304 Sum_probs=40.8
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------------~~~ad~VV~aaG~~s~ 132 (267)
..++...+...|.+.++++|+++++ ++|++++.. .++||.||.|.|.+|.
T Consensus 115 ~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~ 184 (535)
T 3ihg_A 115 AMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSL 184 (535)
T ss_dssp BCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCH
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcch
Confidence 5678888999999999999999987 677776421 2579999999999983
No 42
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=94.06 E-value=0.029 Score=53.56 Aligned_cols=76 Identities=8% Similarity=-0.157 Sum_probs=49.0
Q ss_pred cEECChhhhhcC-CCCceeEEEeee----eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------c
Q psy5261 59 YRDAQPDELVVG-NKTYKYGSYSET----LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------E 117 (267)
Q Consensus 59 ~~~l~~~el~~~-P~~~~~g~~~~~----~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~ 117 (267)
+++++++++.++ +....+|...+. +-..+..++..|.+.+++.|++|+. ++|++|... .
T Consensus 124 ~~~l~~~e~~~~~~~~~~gg~~~~R~~~~~d~tG~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~ 203 (660)
T 2bs2_A 124 TTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGD 203 (660)
T ss_dssp CEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCC
T ss_pred cccccchhhhhhhccccccccccceeEeeCCCCHHHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCc
Confidence 345666666654 312223322221 1123678999999999999999987 677766311 1
Q ss_pred ---cCCCEEEEccCcCchhh
Q psy5261 118 ---SEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 118 ---~~ad~VV~aaG~~s~~l 134 (267)
+.|+.||+|||.++...
T Consensus 204 ~~~i~A~~VVlATGG~~~~y 223 (660)
T 2bs2_A 204 IIAYVAKGTLIATGGYGRIY 223 (660)
T ss_dssp EEEEECSEEEECCCCCGGGS
T ss_pred EEEEEcCEEEEccCcchhhc
Confidence 57999999999998643
No 43
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=93.82 E-value=0.52 Score=42.41 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCC--ceeeeccccCC-CC-----------------CeEEEeCC-CchhhhccHHHHHH
Q psy5261 190 ISRHDTASILERCYSLLPRLEEAP--VLYEWCGLRPH-RS-----------------LVIHNYGH-GGYGVTTAPGTSRY 248 (267)
Q Consensus 190 ~~~~~~~~l~~~~~~~~P~l~~~~--~~~~w~G~rp~-~p-----------------dl~~~~G~-gg~G~t~a~~~a~~ 248 (267)
.+++..+.+++.+.++||...... ....|.+-.|. ++ +||++..+ .|.|+.-+..+|+.
T Consensus 385 ~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~gA~~SG~~ 464 (478)
T 2ivd_A 385 DEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGLNDCIRNAAQ 464 (478)
T ss_dssp CHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHH
Confidence 345566788999999998753211 24567765542 22 37877554 46788888889999
Q ss_pred HHHHHHhhhC
Q psy5261 249 AVQLVKQALD 258 (267)
Q Consensus 249 la~li~~~l~ 258 (267)
+|+.|.+.++
T Consensus 465 aA~~i~~~l~ 474 (478)
T 2ivd_A 465 LADALVAGNT 474 (478)
T ss_dssp HHHHHCC---
T ss_pred HHHHHHHhhc
Confidence 9999987765
No 44
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=92.86 E-value=0.08 Score=43.22 Aligned_cols=49 Identities=12% Similarity=-0.129 Sum_probs=38.2
Q ss_pred ehHHHHHHHHHHHHhC-CcEEEEEeeCCcccc-------------ccCCCEEEEccCcCchhh
Q psy5261 86 ENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGL-------------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~-------------~~~ad~VV~aaG~~s~~l 134 (267)
+...+...|.+.+++. |++++.++|+++... .++||.||+|+|.++...
T Consensus 66 ~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~ 128 (232)
T 2cul_A 66 RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGAR 128 (232)
T ss_dssp CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCE
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhc
Confidence 5668889999999987 999886667665321 268999999999988654
No 45
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=92.71 E-value=0.052 Score=48.79 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=39.9
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCc
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s 131 (267)
..++..+...|.+.+++.|++++. ++|++++.. .++||.||+|+|.++
T Consensus 128 ~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~VIlAtG~~S 187 (417)
T 3v76_A 128 DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLVVASGGKS 187 (417)
T ss_dssp SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTEEEEESEEEECCCCSS
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCcEEEeeEEEECCCCcc
Confidence 346678999999999999999998 688887532 268999999999998
No 46
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=91.82 E-value=0.088 Score=47.52 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=37.9
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------c-cCCCEEEEccCcCc
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------E-SEFDFVFNCAGLGA 131 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~-~~ad~VV~aaG~~s 131 (267)
++..++..|.+.+++.|++|+. ++|+++... . ++||.||+|+|.++
T Consensus 132 ~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 132 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence 3578899999999999999987 677777421 1 67999999999999
No 47
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=91.12 E-value=0.33 Score=43.44 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=41.0
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEe--eCCccccccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGT--VSSFSGLESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~--V~~l~~~~~~ad~VV~aaG~~s~ 132 (267)
..++...+...|.+.+++.|++++..+ +.+++....++|.||+|+|.++.
T Consensus 117 ~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l~~~~~~ad~VV~AdG~~S~ 168 (430)
T 3ihm_A 117 RAVDYRLYQPMLMRALEARGGKFCYDAVSAEDLEGLSEQYDLLVVCTGKYAL 168 (430)
T ss_dssp BEECHHHHHHHHHHHHHHTTCEEEECCCCGGGHHHHHTTSSEEEECCCCTTG
T ss_pred eeecHHHHHHHHHHHHHHcCCEEEEEecchhhhhhhcccCCEEEECCCCcch
Confidence 678999999999999999999998744 35554434589999999999874
No 48
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=91.06 E-value=0.084 Score=49.22 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=39.8
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+...++..|.+.+++.|++|++ ++|++++.. .++||.||+|+|.+++
T Consensus 216 ~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 216 TFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred cchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 445678889999999999999998 678776421 2679999999999996
No 49
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=90.71 E-value=0.16 Score=47.40 Aligned_cols=50 Identities=12% Similarity=-0.126 Sum_probs=40.3
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc---c---------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG---L---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---~---------------~~~ad~VV~aaG~~s~ 132 (267)
+..++..++..|.+.+++.|++|+. ++|++|.. . .++||.||+|+|.++.
T Consensus 250 g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 250 GAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence 5577889999999999999999987 67766531 1 2579999999999875
No 50
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=90.68 E-value=0.18 Score=39.08 Aligned_cols=79 Identities=8% Similarity=-0.018 Sum_probs=51.4
Q ss_pred hHhhhCCCcEECChhhhhcCCC-CceeEEEee--eeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-----------
Q psy5261 51 SIENLVPVYRDAQPDELVVGNK-TYKYGSYSE--TLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL----------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~-~~~~g~~~~--~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~----------- 116 (267)
.+++.|.++.++++.+-. ++. .... .++ +..+++..+...+.+.+++.|++++..+|++++..
T Consensus 19 ~l~~~g~~v~lie~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g 95 (180)
T 2ywl_A 19 FLARAGLKVLVLDGGRSK-VKGVSRVP--NYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG 95 (180)
T ss_dssp HHHHTTCCEEEEECSCCT-TTTCSCCC--CSTTCTTCCCHHHHHHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC
T ss_pred HHHHCCCcEEEEeCCCCc-ccCchhhh--ccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC
Confidence 456677888887765411 110 0000 001 11256778899999999999999987677766431
Q ss_pred ccCCCEEEEccCcCch
Q psy5261 117 ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 117 ~~~ad~VV~aaG~~s~ 132 (267)
.++||.||+|+|.++.
T Consensus 96 ~i~ad~vI~A~G~~~~ 111 (180)
T 2ywl_A 96 VEKAERLLLCTHKDPT 111 (180)
T ss_dssp EEEEEEEEECCTTCCH
T ss_pred EEEECEEEECCCCCCC
Confidence 2579999999999874
No 51
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=90.10 E-value=0.14 Score=45.56 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=38.2
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCcc-c-----c---------ccCCCEEEEccCcCc
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFS-G-----L---------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~-~-----~---------~~~ad~VV~aaG~~s 131 (267)
++..++..|.+.+++.|++++. ++|+++. . . .++||.||+|+|.++
T Consensus 107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g~i~ad~VVlAtG~~s 168 (401)
T 2gqf_A 107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168 (401)
T ss_dssp CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSS
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCCEEECCEEEECCCCcc
Confidence 7888999999999999999987 5776654 2 1 257999999999998
No 52
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=89.72 E-value=0.17 Score=45.70 Aligned_cols=48 Identities=6% Similarity=-0.061 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------------ccCCCEEEEccCcCchhh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l 134 (267)
...++++|++.++++|++++. ++|++|... .++||+||+|+|.|+..+
T Consensus 241 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~g~~~~ad~VV~a~~~~~~~l 303 (453)
T 2bcg_G 241 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKC 303 (453)
T ss_dssp TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCGGGE
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEECCeEEECCEEEECCCccchhh
Confidence 358999999999999999987 688777421 156999999999998766
No 53
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=89.65 E-value=0.16 Score=46.60 Aligned_cols=48 Identities=13% Similarity=-0.065 Sum_probs=37.9
Q ss_pred eehH-HHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCC-EEEEccCcCch
Q psy5261 85 IENS-DFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFD-FVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~-~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad-~VV~aaG~~s~ 132 (267)
.... .++..|.+.++++|++|+. ++|++|... .++|+ .||+|||.++.
T Consensus 198 ~~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~ 265 (510)
T 4at0_A 198 KGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAY 265 (510)
T ss_dssp BCTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTT
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhh
Confidence 3444 8899999999999999997 688776421 15785 99999999983
No 54
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=89.21 E-value=0.17 Score=47.18 Aligned_cols=50 Identities=14% Similarity=-0.059 Sum_probs=40.4
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc---c---------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG---L---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---~---------------~~~ad~VV~aaG~~s~ 132 (267)
+.+++..++..|.+.+++.|++|+. ++|++|.. . .++||.||+|+|.++.
T Consensus 245 ~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 245 GKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 5577899999999999999999987 67766631 0 1568999999999985
No 55
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=88.82 E-value=0.38 Score=42.02 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=41.2
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc---------cccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG---------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---------~~~~ad~VV~aaG~~s~ 132 (267)
..++...+...|.+.+++.|++++. ++|++++. ..++||.||.|+|.++.
T Consensus 102 ~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 102 RIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp EEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTTCH
T ss_pred EEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCccHH
Confidence 6788899999999999999999987 57766531 13689999999999985
No 56
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=88.38 E-value=0.28 Score=46.59 Aligned_cols=50 Identities=6% Similarity=-0.128 Sum_probs=39.5
Q ss_pred eeeehHHHHHHHHHHHHh-CCcEEEEEeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSK-QGGKFRRGTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~-~G~~~~~~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+|...+...|.+.+++ .|++++.++|+++... .++||.||+|+|.++.
T Consensus 119 ~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 119 AQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp EEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 468888999999999988 6999976777776321 2578999999999864
No 57
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=88.13 E-value=0.15 Score=45.79 Aligned_cols=48 Identities=6% Similarity=-0.036 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchhh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~l 134 (267)
...++++|++.+++.|++|+. ++|++|... .++||+||+|+|.|+..+
T Consensus 233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~~~ 293 (433)
T 1d5t_A 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRV 293 (433)
T ss_dssp TTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGGGE
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcccc
Confidence 468999999999999999987 688877432 258999999999998755
No 58
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=87.97 E-value=0.33 Score=45.27 Aligned_cols=50 Identities=18% Similarity=-0.006 Sum_probs=39.2
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcc--c-c---------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFS--G-L---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~--~-~---------------~~~ad~VV~aaG~~s~ 132 (267)
+...+..++..|.+.+++.|++|+. ++|++|. . . .+.||.||+|+|.++.
T Consensus 250 ~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 250 GAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 4456788999999999999999987 6776662 1 0 1569999999999874
No 59
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=87.89 E-value=0.26 Score=44.76 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s 131 (267)
...++.+|++.++++|++|+. ++|++|+.. .+.||+||.+++++.
T Consensus 220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~ 278 (501)
T 4dgk_A 220 TGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVH 278 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred CcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence 357889999999999999998 689888532 257999999999874
No 60
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=87.78 E-value=0.45 Score=45.05 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=39.3
Q ss_pred eeeehHHHHHHHHHHHHh-CCcEEEEEeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSK-QGGKFRRGTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~-~G~~~~~~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+|...+...|.+.+++ .|++|+.++|+++... .+.|+.||+|+|.++.
T Consensus 118 ~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 118 AQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp EEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence 467888999999999988 5999976677776321 2579999999998753
No 61
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=87.68 E-value=0.23 Score=43.65 Aligned_cols=171 Identities=11% Similarity=-0.004 Sum_probs=91.5
Q ss_pred eeeehHHHHHHHHHHHHhC-CcEEEE-EeeCCcccc--------------ccCCCEEEEccCcCch--hhcC-CC-Ccee
Q psy5261 83 LVIENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQ--ALCR-DR-KLTP 142 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~--~l~~-~~-~l~p 142 (267)
..++...+...|.+.+++. |++++. ++|++++.. .++||.||.|+|.++. ..+. +. +..|
T Consensus 102 ~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~p 181 (399)
T 2x3n_A 102 ILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRP 181 (399)
T ss_dssp EECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTSCCCCCCCC
T ss_pred ccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhCCCccccCC
Confidence 4678899999999999998 999987 577665321 2579999999999985 2222 21 1112
Q ss_pred ecce--EEEEE-C----CCcceEEE-e-CCeEEEEecCCCeEEEcceeecC---CCCCCCCHHHHHHHHHHHHhhCCCC-
Q psy5261 143 IRGQ--VIKVW-A----PWLSHFYY-L-DYDVYVIPHSNGAVTLGGCRHYD---SYSRDISRHDTASILERCYSLLPRL- 209 (267)
Q Consensus 143 ~rg~--~~~~~-~----p~~~~~v~-~-~~~~y~~p~~~g~l~lGg~~~~~---~~~~~~~~~~~~~l~~~~~~~~P~l- 209 (267)
..++ ....- . |.. ...+ . +...+++|..++.+.+.-..... .+....+.+ .+.+.+..+-|.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 257 (399)
T 2x3n_A 182 YPSPMLVGTFALAPCVAERN-RLYVDSQGGLAYFYPIGFDRARLVVSFPREEARELMADTRGE---SLRRRLQRFVGDES 257 (399)
T ss_dssp CSSCEEEEEEECCHHHHHCE-EEEECTTSCEEEEEEETTTEEEEEEECCHHHHHHHHHSTTSH---HHHHHHHTTCCGGG
T ss_pred CCCCceEEEEEEecCCCCCc-cEEEcCCCcEEEEEEcCCCEEEEEEEeCccccccccccCCHH---HHHHHHhhcCCcch
Confidence 3444 32221 1 111 1122 2 34567777766666554321111 111111222 2333333333333
Q ss_pred -CCCCcee-eeccccCCCC---------C-eE-------EEeCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 210 -EEAPVLY-EWCGLRPHRS---------L-VI-------HNYGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 210 -~~~~~~~-~w~G~rp~~p---------d-l~-------~~~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
...+... .+....|... + ++ ...-++|.|+.+|.-.|..+++.+...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~ 324 (399)
T 2x3n_A 258 AEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLAL 324 (399)
T ss_dssp HHHHHTCCCSTTCEECCCCCEECSCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhcCCccceEEechhhcccccccccCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 1111111 0222222221 1 32 2345789999999999999999987655
No 62
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=87.07 E-value=0.46 Score=44.54 Aligned_cols=49 Identities=6% Similarity=-0.140 Sum_probs=38.6
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCchhh
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~~l 134 (267)
.+..++..|.+.+++.|++|+. ++|++|.. . .+.|+.||+|+|.++...
T Consensus 141 ~g~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~y 209 (588)
T 2wdq_A 141 TGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIY 209 (588)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGS
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcccc
Confidence 4578999999999999999998 67776632 1 146899999999998653
No 63
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=86.91 E-value=0.4 Score=45.32 Aligned_cols=49 Identities=6% Similarity=-0.138 Sum_probs=38.8
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCchhh
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~~l 134 (267)
.+..++..|.+.+++.|++|+. ++|++|... .++|+.||+|||.++...
T Consensus 153 tG~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~y 220 (621)
T 2h88_A 153 TGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTY 220 (621)
T ss_dssp HHHHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGS
T ss_pred CHHHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccccc
Confidence 4578999999999999999988 677766321 146899999999998643
No 64
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=86.20 E-value=0.4 Score=40.86 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=40.3
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchhhcC
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQALCR 136 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~l~~ 136 (267)
.......+...|.+.+++.|++++. ++|++++.. .+++|.||+|+|.++....+
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~ 137 (357)
T 4a9w_A 71 PYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTP 137 (357)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCC
Confidence 3444577888899999999999887 577776421 25799999999998765443
No 65
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=86.07 E-value=0.43 Score=45.25 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=39.4
Q ss_pred eeeehHHHHHHHHHHHHhC-CcEEEEEeeCCcccc-------------ccCCCEEEEccCcCchh
Q psy5261 83 LVIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGL-------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~-------------~~~ad~VV~aaG~~s~~ 133 (267)
..+|...+...|.+.+++. |++++..+|+++... .++||.||+|+|.|+..
T Consensus 112 ~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~ 176 (641)
T 3cp8_A 112 AQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNG 176 (641)
T ss_dssp EEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTC
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCc
Confidence 4688889999999999885 999876667665321 25789999999998653
No 66
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=86.04 E-value=0.35 Score=40.62 Aligned_cols=62 Identities=10% Similarity=0.011 Sum_probs=42.0
Q ss_pred ehHHHHHHHHHHHHh-CCcEEEE-EeeCCccc---------------------------cccCCCEEEEccCcCc-----
Q psy5261 86 ENSDFLPWAMKRVSK-QGGKFRR-GTVSSFSG---------------------------LESEFDFVFNCAGLGA----- 131 (267)
Q Consensus 86 dp~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~---------------------------~~~~ad~VV~aaG~~s----- 131 (267)
+...+...|.+.+.+ .|++++. ++|+++.. ..++||.||+|+|..+
T Consensus 117 ~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~ 196 (284)
T 1rp0_A 117 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGAT 196 (284)
T ss_dssp CHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHH
Confidence 567788888888876 6999987 57766531 1246899999999544
Q ss_pred -hhhcC----CCCceeecceE
Q psy5261 132 -QALCR----DRKLTPIRGQV 147 (267)
Q Consensus 132 -~~l~~----~~~l~p~rg~~ 147 (267)
..+.. .+++.|.+|+.
T Consensus 197 ~~~~~~~~g~~~~v~~~~g~~ 217 (284)
T 1rp0_A 197 GVKRLKSIGMIDHVPGMKALD 217 (284)
T ss_dssp HHHHHHHTTSSSCCCCCEEEC
T ss_pred HHHHhhhccCCCCcCCcCCch
Confidence 33321 35677777643
No 67
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=85.82 E-value=0.42 Score=41.21 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=37.9
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
.+++..+...+.+.+++.|++++. ++|+++... .+.+|.||+|+|.++.
T Consensus 84 ~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 84 HISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNF 144 (369)
T ss_dssp SCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCSTTS
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCCCc
Confidence 456677888888888999999887 577765421 2578999999999864
No 68
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=85.08 E-value=0.65 Score=42.15 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=38.5
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------------ccCCCEEEEccCcCchh
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~~ 133 (267)
...+..++..|.+.+++.|++++. ++| ++... .+.||.||+|+|.++..
T Consensus 115 d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~ 178 (472)
T 2e5v_A 115 DETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYL 178 (472)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGG
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCccc
Confidence 456778899999999888999987 567 76321 25799999999999864
No 69
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=83.53 E-value=0.75 Score=43.23 Aligned_cols=47 Identities=9% Similarity=-0.138 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhCC-cEEEE-EeeCCcccc------------------ccCCCEEEEccCcCchh
Q psy5261 87 NSDFLPWAMKRVSKQG-GKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G-~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~~ 133 (267)
+..++..|.+.+++.| ++|+. ++|+++... .++|+.||+|+|.++..
T Consensus 133 g~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~ 199 (602)
T 1kf6_A 133 GFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 199 (602)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence 5788999999999999 99987 677665311 15799999999999865
No 70
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=83.50 E-value=0.58 Score=39.71 Aligned_cols=49 Identities=18% Similarity=0.018 Sum_probs=38.7
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
.+++..+...|.+.+++.|++++..+|.++... .+++|.||+|+|.++.
T Consensus 66 ~~~~~~~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~~ 125 (333)
T 1vdc_A 66 GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAK 125 (333)
T ss_dssp CEEHHHHHHHHHHHHHHTTCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCCCcC
Confidence 467888999999999999999987556666421 2579999999999854
No 71
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=82.25 E-value=0.61 Score=40.84 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchh-hcCCCCceeecc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQA-LCRDRKLTPIRG 145 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~-l~~~~~l~p~rg 145 (267)
+..+...+.+.+++.|++|+. ++|++++.. .+.||.||+|+|.+... ++....+..-+|
T Consensus 186 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g 258 (384)
T 2v3a_A 186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG 258 (384)
T ss_dssp CHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC
Confidence 567788889999999999998 577776421 25799999999998764 554333322356
No 72
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=82.12 E-value=0.6 Score=38.71 Aligned_cols=78 Identities=8% Similarity=-0.049 Sum_probs=53.6
Q ss_pred hHhhhCCCcEECChhhhhcC-CCCceeEEEeee-eeeehHHHHHHHHHHHHhC-CcEEEEEeeCCcccc-----------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-NKTYKYGSYSET-LVIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGL----------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~----------- 116 (267)
.+++.|.++.++++...... | .... .+.. ...++..+...+.+.+++. +++++.++|++++..
T Consensus 20 ~l~~~g~~v~lie~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g 96 (297)
T 3fbs_A 20 QLGRARKNILLVDAGERRNRFA-SHSH--GFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGG 96 (297)
T ss_dssp HHHHTTCCEEEEECCCCGGGGC-SCCC--SSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTS
T ss_pred HHHhCCCCEEEEeCCCcccccc-hhhc--CCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCC
Confidence 45667888888887654433 3 1111 1222 4678889999999999887 788877677666421
Q ss_pred -ccCCCEEEEccCcCc
Q psy5261 117 -ESEFDFVFNCAGLGA 131 (267)
Q Consensus 117 -~~~ad~VV~aaG~~s 131 (267)
.+++|.||+|+|...
T Consensus 97 ~~~~~d~vviAtG~~~ 112 (297)
T 3fbs_A 97 RRETAGRLILAMGVTD 112 (297)
T ss_dssp CEEEEEEEEECCCCEE
T ss_pred CEEEcCEEEECCCCCC
Confidence 257999999999864
No 73
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=81.57 E-value=1.1 Score=38.96 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=36.7
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~ 132 (267)
++...+...|.+.+.+.|++++. ++|++++.. .++||.||.|.|.+|.
T Consensus 100 ~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~ 164 (394)
T 1k0i_A 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI 164 (394)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred echHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 45567888899999888999987 566655321 2579999999999985
No 74
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=80.89 E-value=0.81 Score=38.34 Aligned_cols=79 Identities=14% Similarity=-0.114 Sum_probs=52.5
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEE-Eeee-eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc------------
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGS-YSET-LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL------------ 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~-~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~------------ 116 (267)
.+++.|.++.+++++ .-..- .+.... .++. ...++..+...+.+.+++.|++++.++|.++...
T Consensus 33 ~l~~~g~~v~lie~~-~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~ 110 (323)
T 3f8d_A 33 YSARYMLKTLVIGET-PGGQL-TEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKG 110 (323)
T ss_dssp HHHHTTCCEEEEESS-TTGGG-GGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEESCEEEEEEC--CEEEEESSSC
T ss_pred HHHHCCCcEEEEecc-CCCee-cccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCCC
Confidence 456678888888876 21110 000111 1222 3477889999999999999999887666666321
Q ss_pred ccCCCEEEEccCcCc
Q psy5261 117 ESEFDFVFNCAGLGA 131 (267)
Q Consensus 117 ~~~ad~VV~aaG~~s 131 (267)
.+.+|.||+|+|.+.
T Consensus 111 ~~~~d~lvlAtG~~~ 125 (323)
T 3f8d_A 111 EFKADSVILGIGVKR 125 (323)
T ss_dssp EEEEEEEEECCCCEE
T ss_pred EEEcCEEEECcCCCC
Confidence 257999999999874
No 75
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=80.75 E-value=0.6 Score=39.20 Aligned_cols=80 Identities=13% Similarity=-0.131 Sum_probs=50.7
Q ss_pred hHhhhCC-CcEECChhhhhcC-CCCceeEE-Eeee--eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc---------
Q psy5261 51 SIENLVP-VYRDAQPDELVVG-NKTYKYGS-YSET--LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL--------- 116 (267)
Q Consensus 51 ~~~~~g~-~~~~l~~~el~~~-P~~~~~g~-~~~~--~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~--------- 116 (267)
.+++.|. ++.+++++..-.. . ..... .++. ..+++..+...+.+.+++.|++++.++|.++...
T Consensus 19 ~l~~~g~~~v~lie~~~~gg~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~ 96 (311)
T 2q0l_A 19 YATRGGVKNAVLFEKGMPGGQIT--GSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAE 96 (311)
T ss_dssp HHHHTTCSSEEEECSSSTTCGGG--GCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECSCEEEEEEETTEEEEEET
T ss_pred HHHHCCCCcEEEEcCCCCCcccc--cccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEEEEEEEEEcCCEEEEEEc
Confidence 3456688 8888887542211 0 00000 0111 3467888899999999999999876555554311
Q ss_pred ---ccCCCEEEEccCcCch
Q psy5261 117 ---ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 117 ---~~~ad~VV~aaG~~s~ 132 (267)
.+++|.||+|+|.++.
T Consensus 97 ~g~~~~~~~vv~AtG~~~~ 115 (311)
T 2q0l_A 97 DGKTFEAKSVIIATGGSPK 115 (311)
T ss_dssp TSCEEEEEEEEECCCEEEC
T ss_pred CCCEEECCEEEECCCCCCC
Confidence 2679999999998653
No 76
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=80.32 E-value=7.3 Score=33.02 Aligned_cols=165 Identities=11% Similarity=0.059 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCc-hhhcC---------------CC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA-QALCR---------------DR 138 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s-~~l~~---------------~~ 138 (267)
..++..|++.+ |++++. ++|++|+.. .++||.||+|+.+.. ..|+. .+
T Consensus 112 ~~l~~~l~~~~---g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~~~~l~~~ 188 (342)
T 3qj4_A 112 SSIIKHYLKES---GAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQLEAV 188 (342)
T ss_dssp THHHHHHHHHH---TCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCHHHHHHHHTC
T ss_pred HHHHHHHHHhc---CCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCHHHHHHHhcC
Confidence 34555555543 888887 688887532 147999999998642 22321 34
Q ss_pred CceeecceEEEEECC-Ccc----eEEE-eCC-eEEEE-----ec----CCCeEEE---cceeecCCCCCCCCHHHHHHHH
Q psy5261 139 KLTPIRGQVIKVWAP-WLS----HFYY-LDY-DVYVI-----PH----SNGAVTL---GGCRHYDSYSRDISRHDTASIL 199 (267)
Q Consensus 139 ~l~p~rg~~~~~~~p-~~~----~~v~-~~~-~~y~~-----p~----~~g~l~l---Gg~~~~~~~~~~~~~~~~~~l~ 199 (267)
+..|+.--++.++.+ +.+ ..+. ++. -.++. |. .++.+.+ ++... ..+....+++..+.++
T Consensus 189 ~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~ 267 (342)
T 3qj4_A 189 SYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFG-VTYLEHSIEDVQELVF 267 (342)
T ss_dssp CBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHH-HHTTTSCHHHHHHHHH
T ss_pred CccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHH-HHhhcCCHHHHHHHHH
Confidence 555555555555432 211 1111 111 12221 11 0122222 22111 1122234556677899
Q ss_pred HHHHhhCCCCCCCC--ceeeeccccCCC-----C---------CeEEE-eCCCchhhhccHHHHHHHHHHHHhh
Q psy5261 200 ERCYSLLPRLEEAP--VLYEWCGLRPHR-----S---------LVIHN-YGHGGYGVTTAPGTSRYAVQLVKQA 256 (267)
Q Consensus 200 ~~~~~~~P~l~~~~--~~~~w~G~rp~~-----p---------dl~~~-~G~gg~G~t~a~~~a~~la~li~~~ 256 (267)
+.+.++|+.+.... .+..|..-.|.. + .|+++ ..+.|.|+--+...|+.+|+.|...
T Consensus 268 ~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~~~~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~~aa~~i~~~ 341 (342)
T 3qj4_A 268 QQLENILPGLPQPIATKCQKWRHSQVTNAAANCPGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKNY 341 (342)
T ss_dssp HHHHHHSCSCCCCSEEEEEEETTCSBSSCCSSSCSCEEEETTTEEEECSGGGSCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCCCCceeeeccccccccccccCCCcceeEecCCccEEEEccccCCCCccHHHHHHHHHHHHHHhh
Confidence 99999998543321 256777655542 1 15554 2356678888889999999888654
No 77
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=80.13 E-value=2.2 Score=38.84 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=38.2
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc----------------c----ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG----------------L----ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~----------------~----~~~ad~VV~aaG~~s~ 132 (267)
.++...+...|.+.+++.|++++. ++|++++. . .++||.||+|+|.++.
T Consensus 162 ~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~ 231 (497)
T 2bry_A 162 HISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV 231 (497)
T ss_dssp EEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence 356678888999999999999987 56665531 1 2579999999999874
No 78
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=79.90 E-value=0.55 Score=42.90 Aligned_cols=50 Identities=14% Similarity=-0.093 Sum_probs=37.3
Q ss_pred EEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc-c-------------ccCCCEEEEccCcC
Q psy5261 78 SYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG-L-------------ESEFDFVFNCAGLG 130 (267)
Q Consensus 78 ~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~-~-------------~~~ad~VV~aaG~~ 130 (267)
+.|+. | +..++++|++.++++|++++. ++|++|.. . .++||+||+++|.+
T Consensus 248 ~~yp~gG---~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 248 FIYPLYG---LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp EEEETTC---TTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred eEEECCC---HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 44554 4 468899999999999999987 67877643 1 15799999999998
No 79
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=79.65 E-value=5 Score=26.40 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=38.5
Q ss_pred CCCcEECChhhhhcC-CCCceeE-EEeeeeeeehHHHHHHHHHHHHhCCcEEEE
Q psy5261 56 VPVYRDAQPDELVVG-NKTYKYG-SYSETLVIENSDFLPWAMKRVSKQGGKFRR 107 (267)
Q Consensus 56 g~~~~~l~~~el~~~-P~~~~~g-~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~ 107 (267)
|..++.|+.++...+ | .| +.+......|..+...|.+.|.+.|+..+.
T Consensus 3 ~~~v~ei~~~qA~~lq~----~gtVsvsg~~~sp~D~~~~lskkAdekGA~~y~ 52 (72)
T 4evu_A 3 GTKVEELNKATAAMMVP----FDSVKFTGNYGNMTEISYQVAKRAAKKGAKYYH 52 (72)
T ss_dssp --CCEECCHHHHTTSCC----SEEEEEEECCSSHHHHHHHHHHHHHHTTCSEEE
T ss_pred CcEeEEeCHHHHhhCee----ccEEEECCccCChHHHHHHHHHHHHHcCCCEEE
Confidence 667899999999988 8 44 455545678999999999999999998876
No 80
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=79.05 E-value=1.3 Score=39.09 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=38.5
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCchh-hcC
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQA-LCR 136 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~~-l~~ 136 (267)
.+..+...+.+.++++|++|+. ++|++++.. .+.||.||+|+|..... ++.
T Consensus 192 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~ 257 (415)
T 3lxd_A 192 AGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALI 257 (415)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHH
T ss_pred cCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHH
Confidence 4567788888999999999997 577666421 25799999999987653 443
No 81
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=78.91 E-value=0.66 Score=40.91 Aligned_cols=51 Identities=6% Similarity=-0.055 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------ccCCCEEEEccCcCchhhcCCC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------ESEFDFVFNCAGLGAQALCRDR 138 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------~~~ad~VV~aaG~~s~~l~~~~ 138 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.....++.+.
T Consensus 218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~ 277 (409)
T 3h8l_A 218 PNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNS 277 (409)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECCHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCccHHHHhc
Confidence 56788888899999999998 577777542 3689999999999877665443
No 82
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=77.87 E-value=1.1 Score=39.43 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=41.8
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCchh-hcCCCCceeecc
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQA-LCRDRKLTPIRG 145 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~~-l~~~~~l~p~rg 145 (267)
.+..+...+.+.++++|++|+. ++|++++.. .+.||.||+|+|..... ++....+..-+|
T Consensus 182 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G 256 (404)
T 3fg2_P 182 VTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG 256 (404)
T ss_dssp SCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS
T ss_pred cCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC
Confidence 3567788888999999999987 467666421 25799999999997653 544333332355
No 83
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=77.25 E-value=1.2 Score=37.56 Aligned_cols=80 Identities=10% Similarity=-0.070 Sum_probs=49.7
Q ss_pred hHhhhCCCcEECChhhhhcC-CCCceeEE-Eeee--eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc----------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-NKTYKYGS-YSET--LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL---------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P~~~~~g~-~~~~--~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~---------- 116 (267)
.+++.|.++.++++..+-.. . ..... .++. ..++...+...+.+.+++.|++++.++|.++...
T Consensus 26 ~l~~~g~~v~lie~~~~gg~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~ 103 (325)
T 2q7v_A 26 YTGRAQLSTLILEKGMPGGQIA--WSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTV 103 (325)
T ss_dssp HHHHTTCCEEEEESSCTTGGGG--GCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEE
T ss_pred HHHHcCCcEEEEeCCCCCcccc--cccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEE
Confidence 44566888888887632111 0 00000 0111 2356778888899999999999887555544211
Q ss_pred -----ccCCCEEEEccCcCch
Q psy5261 117 -----ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 117 -----~~~ad~VV~aaG~~s~ 132 (267)
.+++|.||+|+|.+..
T Consensus 104 ~~~g~~~~~~~vv~AtG~~~~ 124 (325)
T 2q7v_A 104 RGYNGEYRAKAVILATGADPR 124 (325)
T ss_dssp EESSCEEEEEEEEECCCEEEC
T ss_pred ECCCCEEEeCEEEECcCCCcC
Confidence 2579999999998654
No 84
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=75.83 E-value=21 Score=29.76 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=80.0
Q ss_pred CcEEEE-EeeCCcccc-----------c-c-CCCEEEEccCcCch-hhcC----------CCCceeecceEEEEECC-Cc
Q psy5261 102 GGKFRR-GTVSSFSGL-----------E-S-EFDFVFNCAGLGAQ-ALCR----------DRKLTPIRGQVIKVWAP-WL 155 (267)
Q Consensus 102 G~~~~~-~~V~~l~~~-----------~-~-~ad~VV~aaG~~s~-~l~~----------~~~l~p~rg~~~~~~~p-~~ 155 (267)
|++++. ++|++++.. . . +||.||+|+|..+. .+.. ..+..++--..+.++.+ +.
T Consensus 119 g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~a~~vV~a~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (336)
T 1yvv_A 119 DMPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVVAGVKMDPTWAVALAFETPLQT 198 (336)
T ss_dssp TCCEECSCCEEEEEECSSCEEEEETTSCEEEEESEEEECSCHHHHGGGGTTCHHHHHHHTTCCEEEEEEEEEEESSCCSC
T ss_pred cCcEEecCEEEEEEEeCCEEEEEeCCCcCccccCEEEEcCCHHHHHHhhccCHHHHHHHhhcCccceeEEEEEecCCCCC
Confidence 888887 688877532 1 2 48999999998753 2321 23333333333333332 11
Q ss_pred c--eEEEeC-CeEEEE-----ecCCC---eEEEcceeecC-CCCCCCCHHHHHHHHHHHHhhCCCCC-CC--Cceeeecc
Q psy5261 156 S--HFYYLD-YDVYVI-----PHSNG---AVTLGGCRHYD-SYSRDISRHDTASILERCYSLLPRLE-EA--PVLYEWCG 220 (267)
Q Consensus 156 ~--~~v~~~-~~~y~~-----p~~~g---~l~lGg~~~~~-~~~~~~~~~~~~~l~~~~~~~~P~l~-~~--~~~~~w~G 220 (267)
. .....+ ...++. |..++ .+++-...+.. ......+++..+.+.+.+.++++.-. .. .....|.-
T Consensus 199 ~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~~~~~p~~~~~~rw~~ 278 (336)
T 1yvv_A 199 PMQGCFVQDSPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLY 278 (336)
T ss_dssp CCCEEEECSSSEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTTSCHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEEE
T ss_pred CCCeEEeCCCceeEEEecCcCCCCCCCCcEEEEEeCHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEccccCc
Confidence 1 111211 222221 22222 23332221111 12222345556778888888886321 11 12445542
Q ss_pred ccCCC-----------CCeEEE-eCCCchhhhccHHHHHHHHHHHHhhhCC
Q psy5261 221 LRPHR-----------SLVIHN-YGHGGYGVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 221 ~rp~~-----------pdl~~~-~G~gg~G~t~a~~~a~~la~li~~~l~~ 259 (267)
-.|.. +.++++ -...|.|+-.+.-.|..+|+.|...+.+
T Consensus 279 a~~~~~~~~~~~~~~~~rl~laGDa~~g~gv~~a~~sg~~lA~~l~~~~~~ 329 (336)
T 1yvv_A 279 ARPAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp EEESSCCCCSCEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCCCeeecCCCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 22221 226654 1123458999999999999999988764
No 85
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=75.36 E-value=1.6 Score=40.19 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=43.6
Q ss_pred eeehHHHHHHHHHHHHhCC--cEEEE-EeeCCcccc--------------ccCCCEEEEccCcCchhhcCCCC-ceeecc
Q psy5261 84 VIENSDFLPWAMKRVSKQG--GKFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQALCRDRK-LTPIRG 145 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G--~~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l~~~~~-l~p~rg 145 (267)
..+...+...|...+++.+ ..++. ++|++++.. .++||.||+|+|.++....+++| +.+.+|
T Consensus 90 ~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G 169 (542)
T 1w4x_A 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAG 169 (542)
T ss_dssp SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCS
T ss_pred cCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCC
Confidence 3444556666666666665 45655 466655311 25799999999999866555544 556778
Q ss_pred eEEEEE
Q psy5261 146 QVIKVW 151 (267)
Q Consensus 146 ~~~~~~ 151 (267)
+++...
T Consensus 170 ~~~hs~ 175 (542)
T 1w4x_A 170 NLYHTG 175 (542)
T ss_dssp EEEEGG
T ss_pred ceEECC
Confidence 776554
No 86
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=75.28 E-value=1.9 Score=39.78 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=45.2
Q ss_pred eeeehHHHHHHHHHHHHhCCc--EEEE-EeeCCcccc--------------ccCCCEEEEccCcCchhhcCCCC-ceeec
Q psy5261 83 LVIENSDFLPWAMKRVSKQGG--KFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQALCRDRK-LTPIR 144 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~--~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l~~~~~-l~p~r 144 (267)
...+...+...+.+.+++.|+ .++. ++|++++.. .++||.||+|+|.++....+++| +...+
T Consensus 82 ~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~ 161 (540)
T 3gwf_A 82 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFE 161 (540)
T ss_dssp SEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccC
Confidence 456677888888888888898 6776 577766421 25799999999998765444332 22234
Q ss_pred ceEEEE
Q psy5261 145 GQVIKV 150 (267)
Q Consensus 145 g~~~~~ 150 (267)
|..+..
T Consensus 162 g~~~~~ 167 (540)
T 3gwf_A 162 GETIHT 167 (540)
T ss_dssp SEEEEG
T ss_pred CCEEEe
Confidence 554443
No 87
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=75.17 E-value=1.9 Score=36.47 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=37.3
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
.+++..+...|.+.+++.|++++. ++|++++.. .+++|.||+|+|..+
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~ 121 (335)
T 2zbw_A 61 KVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGA 121 (335)
T ss_dssp SEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSE
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCC
Confidence 467788999999999988999876 577665321 257899999999863
No 88
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=75.06 E-value=1.1 Score=40.36 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
+..+...+.+.++++|++|+. ++|++++.. .+.||.||+|+|.+..
T Consensus 215 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~~~i~aD~Vv~a~G~~p~ 272 (467)
T 1zk7_A 215 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPN 272 (467)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEETTEEEEESEEEECSCEEES
T ss_pred CHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECCcEEEcCEEEECCCCCcC
Confidence 456788899999999999987 577666421 2579999999999865
No 89
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=74.97 E-value=14 Score=32.19 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHHHHH-HhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 93 WAMKRV-SKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 93 ~L~~~~-~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
.+.+.+ ++.| +|+. ++|++|+.. .++||+||+|+|...
T Consensus 208 ~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~ 259 (431)
T 3k7m_X 208 DLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNT 259 (431)
T ss_dssp HHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGG
T ss_pred HHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcch
Confidence 444443 4456 8876 688877532 267999999999754
No 90
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=74.28 E-value=1.5 Score=38.70 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch-hhcC
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ-ALCR 136 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~-~l~~ 136 (267)
+..+...+.+.++++|++|+. ++|.+++.. .+.||.||+|+|.... .++.
T Consensus 184 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~ 247 (410)
T 3ef6_A 184 GRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLAR 247 (410)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHH
Confidence 456777888888999999996 566665421 2579999999999865 3444
No 91
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=74.17 E-value=1.2 Score=40.13 Aligned_cols=45 Identities=18% Similarity=0.023 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhCC-cEEEE-EeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 87 NSDFLPWAMKRVSKQG-GKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G-~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
...++..|++.+++.| ++|+. ++|++|+.. .++||+||+|+|.+.
T Consensus 254 ~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~ 312 (495)
T 2vvm_A 254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV 312 (495)
T ss_dssp HHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred HHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence 3568889999999898 88887 678777532 257999999999874
No 92
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=74.03 E-value=1.7 Score=39.17 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=37.3
Q ss_pred eeeehHHHHHHHHHHHHhCCcE--EEE-EeeCCccc-------------------cccCCCEEEEccCcCchhhc
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGK--FRR-GTVSSFSG-------------------LESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~--~~~-~~V~~l~~-------------------~~~~ad~VV~aaG~~s~~l~ 135 (267)
...+...+...|.+.+++.|++ ++. ++|++++. ..+.+|.||+|+|.++....
T Consensus 96 ~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~ 170 (464)
T 2xve_A 96 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYV 170 (464)
T ss_dssp SSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCcc
Confidence 3456677888888888888887 665 56665521 12479999999998765433
No 93
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=73.76 E-value=2.1 Score=40.72 Aligned_cols=49 Identities=4% Similarity=-0.033 Sum_probs=38.3
Q ss_pred eeehHHHHHHHHHHHHhC--CcEEEE-EeeCCccc------c---------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQ--GGKFRR-GTVSSFSG------L---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~--G~~~~~-~~V~~l~~------~---------------~~~ad~VV~aaG~~s~ 132 (267)
.+++..+...|.+.++++ |++|+. +.|++|.. . .++|+.||+|||.+++
T Consensus 162 ~~~G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~ 234 (662)
T 3gyx_A 162 MINGESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN 234 (662)
T ss_dssp EEEETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence 456778999999999888 999987 67776521 0 1579999999998875
No 94
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=73.36 E-value=3.3 Score=35.99 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=21.4
Q ss_pred ehHHHHHHHHHHHHh-CCcEEEE-EeeCCc
Q psy5261 86 ENSDFLPWAMKRVSK-QGGKFRR-GTVSSF 113 (267)
Q Consensus 86 dp~~~~~~L~~~~~~-~G~~~~~-~~V~~l 113 (267)
+...++..|.+.+++ .|++++. ++|+++
T Consensus 158 ~~~d~~~~L~~~a~~~~gV~i~~~~~V~dL 187 (344)
T 3jsk_A 158 HAALFTSTVLSKVLQRPNVKLFNATTVEDL 187 (344)
T ss_dssp CHHHHHHHHHHHHHTCTTEEEEETEEEEEE
T ss_pred cHHHHHHHHHHHHHhCCCCEEEeCCEEEEE
Confidence 357788999999888 4999987 566554
No 95
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=72.62 E-value=1.4 Score=40.04 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~ 133 (267)
+..+...+.+.++++|++|+. ++|++++.. .+.||.||+|+|.+...
T Consensus 222 d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 222 DADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT 281 (499)
T ss_dssp SHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 346778888899999999987 577666421 25799999999998764
No 96
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=72.39 E-value=2 Score=38.72 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
+..+...+.+.+++.|++|+. ++|++++.. .+.||.||+|+|.+..
T Consensus 201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~ 259 (472)
T 3iwa_A 201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPN 259 (472)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEEC
T ss_pred CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcC
Confidence 356778888889999999997 577766431 2579999999999864
No 97
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=72.01 E-value=2.1 Score=36.04 Aligned_cols=82 Identities=11% Similarity=-0.099 Sum_probs=53.4
Q ss_pred hHhhhCCCcEECChhhhhcC-CCC-ce--eEE-Eeee--eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-NKT-YK--YGS-YSET--LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P~~-~~--~g~-~~~~--~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~------- 116 (267)
.+++.|.++.++++..-... +.+ +. ... .++. ..+.+..+...+.+.+++.|++++..+|.++...
T Consensus 40 ~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~ 119 (338)
T 3itj_A 40 YLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLW 119 (338)
T ss_dssp HHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECSCEEEEECSSSSEEEE
T ss_pred HHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEE
Confidence 45677899999988641111 211 11 001 1222 3467889999999999999999987446665321
Q ss_pred --------ccCCCEEEEccCcCch
Q psy5261 117 --------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 117 --------~~~ad~VV~aaG~~s~ 132 (267)
.+.+|.||+|+|....
T Consensus 120 ~~~~~~~~~~~~d~vvlAtG~~~~ 143 (338)
T 3itj_A 120 TEFNEDAEPVTTDAIILATGASAK 143 (338)
T ss_dssp ETTCSSSCCEEEEEEEECCCEEEC
T ss_pred EEecCCCcEEEeCEEEECcCCCcC
Confidence 2578999999998643
No 98
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=71.62 E-value=1.2 Score=37.47 Aligned_cols=81 Identities=7% Similarity=-0.188 Sum_probs=49.8
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEE-Eeee-eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-----------c
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGS-YSET-LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL-----------E 117 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~-~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~-----------~ 117 (267)
.+++.|.++.++++.+.-..- ...... .++. ..++...+...+.+.+++.|++++..+|.+++.. .
T Consensus 34 ~l~~~g~~v~lie~~~~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~ 112 (319)
T 3cty_A 34 YAARSGFSVAILDKAVAGGLT-AEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVEVRSIKKTQGGFDIETNDDT 112 (319)
T ss_dssp HHHHTTCCEEEEESSSTTGGG-GGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCCEEEEEEETTEEEEEESSSE
T ss_pred HHHhCCCcEEEEeCCCCCccc-cccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEeeEEEEEEeCCEEEEEECCCE
Confidence 456678888888875321110 000000 0111 2456678888888889999998876555555321 2
Q ss_pred cCCCEEEEccCcCch
Q psy5261 118 SEFDFVFNCAGLGAQ 132 (267)
Q Consensus 118 ~~ad~VV~aaG~~s~ 132 (267)
+.+|.||+|+|.+..
T Consensus 113 ~~~~~li~AtG~~~~ 127 (319)
T 3cty_A 113 YHAKYVIITTGTTHK 127 (319)
T ss_dssp EEEEEEEECCCEEEC
T ss_pred EEeCEEEECCCCCcc
Confidence 579999999998654
No 99
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=71.60 E-value=2 Score=36.00 Aligned_cols=78 Identities=10% Similarity=-0.129 Sum_probs=51.9
Q ss_pred hHhhhCCCcEECChhhh-----hcC-CCCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------
Q psy5261 51 SIENLVPVYRDAQPDEL-----VVG-NKTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------ 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el-----~~~-P~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------ 116 (267)
.+++.|.++.++++..- ... | ... -..++. ..+.+..+...+.+.+++.|++++. ++|+++...
T Consensus 25 ~l~~~g~~v~lie~~~~~gG~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 102 (332)
T 3lzw_A 25 YGGMRQASVKIIESLPQLGGQLSALYP-EKY-IYDVAGFPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFK 102 (332)
T ss_dssp HHHHTTCCEEEECSSSSSCHHHHHHCT-TSE-ECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEE
T ss_pred HHHHCCCCEEEEEcCCCCCceehhcCC-Cce-EeccCCCCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEE
Confidence 45667888888887641 112 3 110 001111 3457889999999999999999986 677776421
Q ss_pred ------ccCCCEEEEccCcC
Q psy5261 117 ------ESEFDFVFNCAGLG 130 (267)
Q Consensus 117 ------~~~ad~VV~aaG~~ 130 (267)
.+.+|.||+|+|..
T Consensus 103 v~~~~g~~~~d~vVlAtG~~ 122 (332)
T 3lzw_A 103 LVTNEETHYSKTVIITAGNG 122 (332)
T ss_dssp EEESSEEEEEEEEEECCTTS
T ss_pred EEECCCEEEeCEEEECCCCC
Confidence 14699999999994
No 100
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=71.30 E-value=2.4 Score=36.30 Aligned_cols=79 Identities=14% Similarity=-0.024 Sum_probs=50.9
Q ss_pred hHhhhCCCcEECChhhhh-----cC-CCCceeEEEeee-eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------
Q psy5261 51 SIENLVPVYRDAQPDELV-----VG-NKTYKYGSYSET-LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------ 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~-----~~-P~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------ 116 (267)
.+++.|.++.++++.... .. | .. .-+.++. ..+++..+...|.+.+++.|++++. ++|+++...
T Consensus 32 ~l~~~g~~v~lie~~~~~gg~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 109 (360)
T 3ab1_A 32 QCGMNNISCRIIESMPQLGGQLAALYP-EK-HIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFE 109 (360)
T ss_dssp HHHHTTCCEEEECSSSSSCHHHHHTCT-TS-EECCSTTCSSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEE
T ss_pred HHHhCCCCEEEEecCCCCCCcccccCC-Cc-ccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEE
Confidence 345668888888875321 12 3 10 0001111 2467888999999999999999876 577665421
Q ss_pred -------ccCCCEEEEccCcCc
Q psy5261 117 -------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 117 -------~~~ad~VV~aaG~~s 131 (267)
.+++|.||+|+|..+
T Consensus 110 v~~~~g~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 110 TRTNTGNVYRSRAVLIAAGLGA 131 (360)
T ss_dssp EEETTSCEEEEEEEEECCTTCS
T ss_pred EEECCCcEEEeeEEEEccCCCc
Confidence 257899999999853
No 101
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=70.44 E-value=2 Score=35.80 Aligned_cols=50 Identities=8% Similarity=-0.081 Sum_probs=37.9
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc------------c---ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG------------L---ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~------------~---~~~ad~VV~aaG~~s~ 132 (267)
...++..+...+.+.+++.|++++. ++|+.+.. . .+++|.||+|+|.+..
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~ 116 (310)
T 1fl2_A 51 PKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR 116 (310)
T ss_dssp SSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence 3456778888898889999999987 47766621 0 2579999999998653
No 102
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=69.81 E-value=2.9 Score=39.82 Aligned_cols=46 Identities=17% Similarity=0.037 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
+..+...+.+.++++|++|+. ++|++++.. .+.||.||+|+|....
T Consensus 566 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~ 625 (690)
T 3k30_A 566 NTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR 625 (690)
T ss_dssp GGTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred cchhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence 344567788888999999998 688776432 2579999999998643
No 103
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=68.95 E-value=2.5 Score=37.69 Aligned_cols=51 Identities=12% Similarity=0.002 Sum_probs=34.6
Q ss_pred eehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCchhhc
Q psy5261 85 IENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 85 vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~~l~ 135 (267)
.....+...|.+.+++.+..++. ++|++++.. .+.+|.||+|+|.++....
T Consensus 112 ~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~ 181 (447)
T 2gv8_A 112 PHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYI 181 (447)
T ss_dssp CBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCB
T ss_pred CCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCC
Confidence 44556777777777776766665 566655310 2569999999999875433
No 104
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=68.07 E-value=2.6 Score=39.85 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=37.5
Q ss_pred eeehHHHHHHHHHHHHhC-Cc-EEEE-EeeCCccc----------------c-----ccCCCEEEEccCcCchh
Q psy5261 84 VIENSDFLPWAMKRVSKQ-GG-KFRR-GTVSSFSG----------------L-----ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~-G~-~~~~-~~V~~l~~----------------~-----~~~ad~VV~aaG~~s~~ 133 (267)
.+++..+.+.|.+.+++. |+ +|+. ++|+++.. . .+.|+.||+|||.++..
T Consensus 147 ~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~ 220 (643)
T 1jnr_A 147 MIHGESYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLL 220 (643)
T ss_dssp EEEETTHHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred CCCcHHHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccccc
Confidence 356777888999888888 99 8887 56655421 0 15799999999999864
No 105
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=67.53 E-value=0.98 Score=40.32 Aligned_cols=74 Identities=9% Similarity=0.025 Sum_probs=49.5
Q ss_pred hCCCcEECChhhhhcC-CCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc----------ccCCCEE
Q psy5261 55 LVPVYRDAQPDELVVG-NKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL----------ESEFDFV 123 (267)
Q Consensus 55 ~g~~~~~l~~~el~~~-P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~----------~~~ad~V 123 (267)
.+.++.++++++-... | .+. .+..+..++..+...+.+.+++.|++++..+|+.++.. .+.+|.+
T Consensus 29 ~g~~Vtlie~~~~~~~~~-~~~---~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~l 104 (437)
T 3sx6_A 29 SGHEVTLISANDYFQFVP-SNP---WVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYL 104 (437)
T ss_dssp GGSEEEEECSSSEEECGG-GHH---HHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEE
T ss_pred CcCEEEEEeCCCCCcccC-Ccc---ccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEE
Confidence 5778888887764333 3 110 11125566666766777888889999987677766432 2679999
Q ss_pred EEccCcCch
Q psy5261 124 FNCAGLGAQ 132 (267)
Q Consensus 124 V~aaG~~s~ 132 (267)
|+|+|....
T Consensus 105 viAtG~~~~ 113 (437)
T 3sx6_A 105 MIATGPKLA 113 (437)
T ss_dssp EECCCCEEC
T ss_pred EECCCCCcC
Confidence 999998654
No 106
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=67.25 E-value=2 Score=38.42 Aligned_cols=46 Identities=22% Similarity=0.086 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchh
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~ 133 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|.....
T Consensus 208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~ 266 (455)
T 2yqu_A 208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT 266 (455)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence 46677888888899999987 577766421 25799999999998653
No 107
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=66.15 E-value=4.2 Score=37.11 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCchh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~~ 133 (267)
+..+...+.+.++++|++++. ++|++++.. .+.||.||.|+|...+.
T Consensus 271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~ 334 (502)
T 4g6h_A 271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARP 334 (502)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCH
T ss_pred CHHHHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCH
Confidence 356777788889999999987 677776532 25799999999986543
No 108
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=65.14 E-value=3.3 Score=37.58 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCchh
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~~ 133 (267)
..+...+.+.++++|++|+. ++|++++.. .+.||.||+|+|.....
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence 46778888899999999998 577666421 25799999999987653
No 109
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=64.49 E-value=2.7 Score=37.94 Aligned_cols=45 Identities=18% Similarity=0.051 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.+++.|++|+. ++|++++.. .+.||.||+|+|....
T Consensus 232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~ 289 (484)
T 3o0h_A 232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPN 289 (484)
T ss_dssp HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence 45778888889999999997 577776432 2579999999998654
No 110
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=64.48 E-value=3.1 Score=34.75 Aligned_cols=80 Identities=9% Similarity=-0.157 Sum_probs=48.1
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEE-Eeee--eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-----------
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGS-YSET--LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL----------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~-~~~~--~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~----------- 116 (267)
.+++.|.++.+++..+.-..- .+.... .++. ..+++..+...+.+.+++.|++++..+|..++..
T Consensus 23 ~l~~~g~~v~lie~~~~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~~ 101 (320)
T 1trb_A 23 YAARANLQPVLITGMEKGGQL-TTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG 101 (320)
T ss_dssp HHHTTTCCCEEECCSSTTGGG-GGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEESSC
T ss_pred HHHHCCCcEEEEccCCCCceE-ecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEeeeeEEEecCCEEEEEeCCC
Confidence 345667788777754321100 000000 0111 2356678888888889999999887556555321
Q ss_pred ccCCCEEEEccCcCc
Q psy5261 117 ESEFDFVFNCAGLGA 131 (267)
Q Consensus 117 ~~~ad~VV~aaG~~s 131 (267)
.+.+|.||+|+|...
T Consensus 102 ~~~~~~lv~AtG~~~ 116 (320)
T 1trb_A 102 EYTCDALIIATGASA 116 (320)
T ss_dssp EEEEEEEEECCCEEE
T ss_pred EEEcCEEEECCCCCc
Confidence 257999999999864
No 111
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=64.05 E-value=3.9 Score=36.49 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
+..+...+.+.++++|++|+. ++|++++.. .+.||.||+|+|....
T Consensus 188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~i~aD~Vv~A~G~~p~ 245 (452)
T 3oc4_A 188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSGIFALNLHPQ 245 (452)
T ss_dssp CHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSCEEEESEEEECSCCBCC
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCCEEEeCEEEECcCCCCC
Confidence 356778888899999999998 677777521 2579999999998643
No 112
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=63.99 E-value=3.3 Score=37.89 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc----------------c-ccCCCEEEEccCcCchh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG----------------L-ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~----------------~-~~~ad~VV~aaG~~s~~ 133 (267)
+..+...+.+.++++|++|+. ++|++++. . .+.||.||+|+|.+...
T Consensus 254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~ 318 (523)
T 1mo9_A 254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318 (523)
T ss_dssp SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence 456788889999999999986 46655532 0 25799999999998764
No 113
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=63.89 E-value=2.1 Score=39.48 Aligned_cols=48 Identities=4% Similarity=-0.050 Sum_probs=31.7
Q ss_pred ehHHHHHHHHHHHHh-CCcEEEE-EeeCCccc----------c---------------ccCCCEEEEccCcCchh
Q psy5261 86 ENSDFLPWAMKRVSK-QGGKFRR-GTVSSFSG----------L---------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 86 dp~~~~~~L~~~~~~-~G~~~~~-~~V~~l~~----------~---------------~~~ad~VV~aaG~~s~~ 133 (267)
.+..++..|.+.+++ .|++|+. ++|+++.. . .+.|+.||+|+|.++..
T Consensus 136 ~g~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 210 (540)
T 1chu_A 136 TGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKV 210 (540)
T ss_dssp ------CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGG
T ss_pred CHHHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 456788889999988 6999987 56555421 1 14689999999999864
No 114
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=63.65 E-value=3.3 Score=35.12 Aligned_cols=79 Identities=11% Similarity=-0.050 Sum_probs=47.9
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeE--E-Eeee--eeeehHHHHHHHHHHHHhCCcEEEEEeeCCccc----------
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYG--S-YSET--LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSG---------- 115 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g--~-~~~~--~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~---------- 115 (267)
.+++.|.++.++++.+.-. .+... . .++. ..++...+...+.+.+++.|++++..+|.+++.
T Consensus 32 ~l~~~g~~v~lie~~~~gg---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~ 108 (335)
T 2a87_A 32 YAARAQLAPLVFEGTSFGG---ALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTA 108 (335)
T ss_dssp HHHHTTCCCEEECCSSCSC---GGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEET
T ss_pred HHHhCCCeEEEEecCCCCC---ceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEeeEEEEEeCCcEEEEEeC
Confidence 3456688888887542211 00000 0 0111 235667888888888889999988644543321
Q ss_pred --cccCCCEEEEccCcCch
Q psy5261 116 --LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 116 --~~~~ad~VV~aaG~~s~ 132 (267)
..+++|.||+|+|.+..
T Consensus 109 ~g~~~~~d~lviAtG~~~~ 127 (335)
T 2a87_A 109 DGQTHRARAVILAMGAAAR 127 (335)
T ss_dssp TSCEEEEEEEEECCCEEEC
T ss_pred CCCEEEeCEEEECCCCCcc
Confidence 13579999999998653
No 115
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=63.60 E-value=1.4 Score=38.82 Aligned_cols=75 Identities=8% Similarity=-0.104 Sum_probs=47.0
Q ss_pred HhhhCCCcEECChhhhhcC--CCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------cc
Q psy5261 52 IENLVPVYRDAQPDELVVG--NKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------ES 118 (267)
Q Consensus 52 ~~~~g~~~~~l~~~el~~~--P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------~~ 118 (267)
+...+.++.+++++.-... | .+.. +..+..++..+...+.+.+++.|++++. ++|+++... .+
T Consensus 28 L~~~~~~itlie~~~~~~y~~~-~l~~---~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~ 103 (385)
T 3klj_A 28 ALGKCDDITMINSEKYLPYYRP-RLNE---IIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKI 103 (385)
T ss_dssp HTTTCSCEEEECSSSSCCBCGG-GHHH---HHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTSCEE
T ss_pred HhCCCCEEEEEECCCCCCcccC-hhhH---HHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEE
Confidence 3566778888887753321 2 1100 1123444555555556667788999987 588877532 25
Q ss_pred CCCEEEEccCcC
Q psy5261 119 EFDFVFNCAGLG 130 (267)
Q Consensus 119 ~ad~VV~aaG~~ 130 (267)
.+|++|+|||..
T Consensus 104 ~yd~lvlAtG~~ 115 (385)
T 3klj_A 104 KYEKLIIASGSI 115 (385)
T ss_dssp ECSEEEECCCEE
T ss_pred ECCEEEEecCCC
Confidence 799999999973
No 116
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=63.39 E-value=5.7 Score=34.92 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc--------cccCCCEEEEccCcCch-hhcC
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--------LESEFDFVFNCAGLGAQ-ALCR 136 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--------~~~~ad~VV~aaG~~s~-~l~~ 136 (267)
+..+...+.+.++++|++|+. ++|++++. ..+.||.||+|+|.... .++.
T Consensus 186 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 245 (408)
T 2gqw_A 186 PATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALAR 245 (408)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSCEEECCHHHH
T ss_pred CHHHHHHHHHHHHHcCcEEEeCCEEEEEECCEEEECCCCEEEcCEEEECcCCCccHHHHH
Confidence 456778888889999999998 57776641 03689999999998754 3543
No 117
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=63.10 E-value=4.3 Score=35.60 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccccccCCCEEEEccCcCch-hhcCCCCceeecc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGLESEFDFVFNCAGLGAQ-ALCRDRKLTPIRG 145 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~~~~ad~VV~aaG~~s~-~l~~~~~l~p~rg 145 (267)
..+...+.+.++++|++++. ++|.++ ...+.||.||+|+|.... .++.+..+..-+|
T Consensus 188 ~~~~~~~~~~l~~~gV~~~~~~~v~~i-g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~g 246 (385)
T 3klj_A 188 RDGGLFLKDKLDRLGIKIYTNSNFEEM-GDLIRSSCVITAVGVKPNLDFIKDTEIASKRG 246 (385)
T ss_dssp HHHHHHHHHHHHTTTCEEECSCCGGGC-HHHHHHSEEEECCCEEECCGGGTTSCCCBSSS
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEc-CeEEecCeEEECcCcccChhhhhhcCCCcCCC
Confidence 45666778888899999998 578776 234789999999998754 4555444433345
No 118
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=62.95 E-value=0.74 Score=40.60 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=45.6
Q ss_pred hCCCcEECChhhhhcC-CCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc---------c-----cC
Q psy5261 55 LVPVYRDAQPDELVVG-NKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL---------E-----SE 119 (267)
Q Consensus 55 ~g~~~~~l~~~el~~~-P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~---------~-----~~ 119 (267)
.+.++.++++++-... | .... ...+..++..+...+.+.+++.|++++..+|+++... . ++
T Consensus 26 ~g~~V~vie~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~ 101 (409)
T 3h8l_A 26 SKADVKVINKSRFSYFRP-ALPH---VAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEE 101 (409)
T ss_dssp GGSEEEEEESSSEEEECC-SSCC---CCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CCCeEEEEeCCCCceecc-chhh---cccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceee
Confidence 6778888887764322 3 1110 1113334444445566677788999988777666432 1 67
Q ss_pred CCEEEEccCcCc
Q psy5261 120 FDFVFNCAGLGA 131 (267)
Q Consensus 120 ad~VV~aaG~~s 131 (267)
+|.||+|+|...
T Consensus 102 ~d~lViAtG~~~ 113 (409)
T 3h8l_A 102 YDYVIVGIGAHL 113 (409)
T ss_dssp CSEEEECCCCEE
T ss_pred CCEEEECCCCCc
Confidence 999999999854
No 119
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=62.51 E-value=2.9 Score=38.64 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=38.8
Q ss_pred eeeehHHHHHHHHHHHHhCCc--EEEE-EeeCCcccc--------------ccCCCEEEEccCcCchhhcC
Q psy5261 83 LVIENSDFLPWAMKRVSKQGG--KFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQALCR 136 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~--~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l~~ 136 (267)
...+...+...+.+.+++.|+ .++. ++|++++.. .++||.||+|+|.++....+
T Consensus 94 ~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p 164 (549)
T 4ap3_A 94 KYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTP 164 (549)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCC
Confidence 455667788888888888887 6666 577766321 25799999999987654433
No 120
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=62.36 E-value=4.9 Score=37.22 Aligned_cols=45 Identities=7% Similarity=0.136 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.+++.|++|+. ++|++++.. .+.+|.||+|+|....
T Consensus 228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~ 283 (588)
T 3ics_A 228 YEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPE 283 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 56778888889999999997 577776531 2679999999998754
No 121
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=61.86 E-value=3.8 Score=37.22 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
|..+...+.+.++++|++++. ++|++++.. .+.||.||+|+|....
T Consensus 225 ~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn 283 (493)
T 1m6i_A 225 PEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN 283 (493)
T ss_dssp CHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred CHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence 456777888889999999987 577666421 2579999999998765
No 122
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=61.53 E-value=4.3 Score=33.78 Aligned_cols=81 Identities=10% Similarity=-0.159 Sum_probs=49.8
Q ss_pred hHhhhCCCcEECChhhhhcC-CCC-c--eeEE-Eee--eeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc-------
Q psy5261 51 SIENLVPVYRDAQPDELVVG-NKT-Y--KYGS-YSE--TLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL------- 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~-P~~-~--~~g~-~~~--~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~------- 116 (267)
.+++.|.++-+++....... +.+ . ..-+ .++ +-.+++..+...+.+.+++.+.++....|......
T Consensus 22 ~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (314)
T 4a5l_A 22 YLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIITETIDHVDFSTQPFKLF 101 (314)
T ss_dssp HHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEE
T ss_pred HHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEEeEEEEeecCCCceEEE
Confidence 34667888888887654322 200 0 0000 011 13467888899999999999998876443332111
Q ss_pred -----ccCCCEEEEccCcCc
Q psy5261 117 -----ESEFDFVFNCAGLGA 131 (267)
Q Consensus 117 -----~~~ad~VV~aaG~~s 131 (267)
.+++|+||+|||...
T Consensus 102 ~~~~~~~~~~~liiATG~~~ 121 (314)
T 4a5l_A 102 TEEGKEVLTKSVIIATGATA 121 (314)
T ss_dssp ETTCCEEEEEEEEECCCEEE
T ss_pred ECCCeEEEEeEEEEcccccc
Confidence 267999999999754
No 123
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=61.50 E-value=3.6 Score=38.72 Aligned_cols=50 Identities=10% Similarity=0.211 Sum_probs=37.4
Q ss_pred eeeehHHHHHHHHHHHHhCCc--EEEE-EeeCCccc--------------------c----ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGG--KFRR-GTVSSFSG--------------------L----ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~--~~~~-~~V~~l~~--------------------~----~~~ad~VV~aaG~~s~ 132 (267)
..++...+...|.+.+++.|+ +++. ++|++++. . .++||.||.|.|.+|.
T Consensus 136 ~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~ 212 (639)
T 2dkh_A 136 VILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN 212 (639)
T ss_dssp EECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH
T ss_pred EeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH
Confidence 457777889999999999987 7765 45554421 0 2568999999999985
No 124
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=61.41 E-value=0.51 Score=42.18 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=27.5
Q ss_pred HHHHHHhCCcEEEEEeeCCcccc----------ccCCCEEEEccCcC
Q psy5261 94 AMKRVSKQGGKFRRGTVSSFSGL----------ESEFDFVFNCAGLG 130 (267)
Q Consensus 94 L~~~~~~~G~~~~~~~V~~l~~~----------~~~ad~VV~aaG~~ 130 (267)
+.+.+++.|++|+..+|++|+.. .+.+|++|+|+|+.
T Consensus 62 ~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~ 108 (430)
T 3hyw_A 62 LAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPK 108 (430)
T ss_dssp STTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCE
T ss_pred HHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCC
Confidence 34445677999988778777532 26799999999974
No 125
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=60.87 E-value=5.3 Score=36.01 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch-hhcCC
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ-ALCRD 137 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~-~l~~~ 137 (267)
+..+...+.+.+++.|++|+. ++|++++.. .+.||.||+|+|.... .++..
T Consensus 226 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~~l~~ 289 (480)
T 3cgb_A 226 DGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTDFLEG 289 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCGGGTT
T ss_pred CHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChHHHHh
Confidence 356778888899999999987 566655321 2679999999998764 35443
No 126
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=60.10 E-value=5.2 Score=35.64 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc-c-----------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG-L-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~-~-----------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++|+. ++|++++. . .+.||.||+|+|....
T Consensus 191 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~ 248 (452)
T 2cdu_A 191 KEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPN 248 (452)
T ss_dssp HHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred hhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence 56777888889999999998 57766643 1 2579999999998654
No 127
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=59.93 E-value=3.6 Score=37.64 Aligned_cols=49 Identities=10% Similarity=-0.050 Sum_probs=37.7
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCccc------------c---ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG------------L---ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~------------~---~~~ad~VV~aaG~~s~ 132 (267)
..++..+...+.+.+++.|++++. ++|+++.. . .+++|.||+|+|.+..
T Consensus 263 ~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~ 327 (521)
T 1hyu_A 263 KTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR 327 (521)
T ss_dssp SBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 356778888999999999999987 47766631 0 2579999999998754
No 128
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=59.64 E-value=6.7 Score=34.87 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.+++.|++|+. ++|++++.. .+.+|.||+|+|....
T Consensus 191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~d~vi~a~G~~p~ 247 (447)
T 1nhp_A 191 KEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPN 247 (447)
T ss_dssp HHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECSCEEES
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEECCCEEECCEEEECcCCCCC
Confidence 56777888889999999998 566655321 2579999999998754
No 129
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=58.85 E-value=6.1 Score=35.82 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++|+. ++|.+++.. .+.||.||+|+|....
T Consensus 235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~ 293 (495)
T 2wpf_A 235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR 293 (495)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccc
Confidence 35677888889999999998 577666421 2579999999998754
No 130
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=58.28 E-value=4.6 Score=36.17 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCchh
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQA 133 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~~ 133 (267)
+..+...+.+.++++|++|+. ++|++++.. .+.||.||+|+|.+...
T Consensus 210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~i~aD~Vv~a~G~~p~~ 270 (463)
T 4dna_A 210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNT 270 (463)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCEEEESEEEECSCEEESC
T ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCeEEeCEEEEeeCcccCC
Confidence 356778888899999999987 566655321 14689999999987653
No 131
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=58.19 E-value=16 Score=26.16 Aligned_cols=55 Identities=5% Similarity=-0.130 Sum_probs=39.0
Q ss_pred EeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCchh
Q psy5261 79 YSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQA 133 (267)
Q Consensus 79 ~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~~ 133 (267)
.|.+...|..+++..+++.+++.|+++....+.+..... ..+|.||+++-.|...
T Consensus 5 iy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~ 60 (137)
T 2fz5_A 5 VYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSE 60 (137)
T ss_dssp EECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTT
T ss_pred EEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCC
Confidence 344467888999999999998888776543444332222 3799999999988544
No 132
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=58.02 E-value=4.6 Score=33.44 Aligned_cols=79 Identities=11% Similarity=-0.073 Sum_probs=50.2
Q ss_pred hHhhhCCCcEE-CChhhhhcCCCCceeEE-Eeee--eeeehHHHHHHHHHHHHhCCcEEEEEeeCCc-cc----c-----
Q psy5261 51 SIENLVPVYRD-AQPDELVVGNKTYKYGS-YSET--LVIENSDFLPWAMKRVSKQGGKFRRGTVSSF-SG----L----- 116 (267)
Q Consensus 51 ~~~~~g~~~~~-l~~~el~~~P~~~~~g~-~~~~--~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l-~~----~----- 116 (267)
.+++.|.++.+ ++++.+-... ...... .++. ..+.+..+...+.+.+++.|++++..+|.++ +. .
T Consensus 22 ~l~~~g~~v~li~e~~~~gG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~ 100 (315)
T 3r9u_A 22 YATRGGLKNVVMFEKGMPGGQI-TSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLE 100 (315)
T ss_dssp HHHHHTCSCEEEECSSSTTGGG-GGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECCCEEEEEECTTSCEEEEET
T ss_pred HHHHCCCCeEEEEeCCCCCcee-eeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEEEEEEEecCCCCcEEEEEe
Confidence 45667888888 8874432110 000000 1121 3567788999999999999999887555554 11 0
Q ss_pred ---ccCCCEEEEccCcC
Q psy5261 117 ---ESEFDFVFNCAGLG 130 (267)
Q Consensus 117 ---~~~ad~VV~aaG~~ 130 (267)
.+.+|.||+|+|..
T Consensus 101 ~~~~~~~d~lvlAtG~~ 117 (315)
T 3r9u_A 101 GGKTELAKAVIVCTGSA 117 (315)
T ss_dssp TSCEEEEEEEEECCCEE
T ss_pred cCCEEEeCEEEEeeCCC
Confidence 25789999999984
No 133
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=57.27 E-value=8.2 Score=34.82 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.+++.|++|+. ++|++++.. .+.||.||+|+|....
T Consensus 236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vi~a~G~~p~ 292 (490)
T 2bc0_A 236 RDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPN 292 (490)
T ss_dssp HHHHHHHHHHHHTTTCEEEETCCEEEEECSSSCCEEEESSCEEECSEEEECCCEEEC
T ss_pred HHHHHHHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEECCcEEECCEEEECCCCCcC
Confidence 45667788888999999998 566665321 2579999999998654
No 134
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=56.82 E-value=4.3 Score=37.49 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=35.9
Q ss_pred eeeehHHHHHHHHHHHHhCCc--EEEE-EeeCCcccc--------------ccCCCEEEEccCcCchhhcC
Q psy5261 83 LVIENSDFLPWAMKRVSKQGG--KFRR-GTVSSFSGL--------------ESEFDFVFNCAGLGAQALCR 136 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~--~~~~-~~V~~l~~~--------------~~~ad~VV~aaG~~s~~l~~ 136 (267)
...+...+...+.+.+++.|+ .++. ++|++++.. .++||.||+|+|.++....+
T Consensus 82 ~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p 152 (545)
T 3uox_A 82 NFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMP 152 (545)
T ss_dssp SSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---C
T ss_pred cCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCC
Confidence 455667777778788888776 5655 566665321 25799999999987654433
No 135
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=56.35 E-value=11 Score=34.04 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------c-cCCCEEEEccCcCchh--h-cCCCCceeecceEE
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------E-SEFDFVFNCAGLGAQA--L-CRDRKLTPIRGQVI 148 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~-~~ad~VV~aaG~~s~~--l-~~~~~l~p~rg~~~ 148 (267)
..+...+.+.++++|++|+. ++|++++.. . +.+|.||+|+|..... | +....+.-.+|.+.
T Consensus 217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~ 295 (500)
T 1onf_A 217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIV 295 (500)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEE
T ss_pred hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEE
Confidence 45677788889999999987 466655321 2 6799999999987654 4 34333322466544
No 136
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=55.73 E-value=4.3 Score=35.43 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=33.1
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
.++-..+...|.+.+.+ ++++. ++|++++.. .++||.||.|.|.+|.
T Consensus 124 ~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 124 EINRNDLRAILLNSLEN--DTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp EECHHHHHHHHHHTSCT--TSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred eECHHHHHHHHHhhcCC--CEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence 46666777788776643 56666 577766431 2579999999999974
No 137
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=55.68 E-value=13 Score=26.90 Aligned_cols=57 Identities=11% Similarity=-0.053 Sum_probs=39.6
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcCchhh
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~~l 134 (267)
+.|.+.+.|..++...+++.+++.|+++.-..+.+..... ..+|.||+++-.|....
T Consensus 3 I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~ 60 (138)
T 5nul_A 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEV 60 (138)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTB
T ss_pred EEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCC
Confidence 3455567899999999999999988654332333322112 37999999998886543
No 138
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=55.47 E-value=6.4 Score=34.99 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------------ccCCCEEEEccCc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------------ESEFDFVFNCAGL 129 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------------~~~ad~VV~aaG~ 129 (267)
-..+...+...+++.|+.++. ++|++++.. .+++|.||+|+|.
T Consensus 126 ~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~ 190 (463)
T 3s5w_A 126 RMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG 190 (463)
T ss_dssp HHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence 345666677777777888877 566665321 2569999999997
No 139
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=54.79 E-value=65 Score=30.30 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=17.7
Q ss_pred eCCCchhhhccHHHHHHHHHHHHhhh
Q psy5261 232 YGHGGYGVTTAPGTSRYAVQLVKQAL 257 (267)
Q Consensus 232 ~G~gg~G~t~a~~~a~~la~li~~~l 257 (267)
.-++|.|+.+|.-=|..|+..+...+
T Consensus 364 ~P~~GqG~N~gi~DA~nLawkLa~vl 389 (665)
T 1pn0_A 364 SPKAGQGMNTSMMDTYNLGWKLGLVL 389 (665)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcchhHHHHHHHHHHHHHHH
Confidence 34678898888877776665554433
No 140
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=54.42 E-value=9.6 Score=34.24 Aligned_cols=75 Identities=11% Similarity=-0.045 Sum_probs=46.4
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEE-Eee-eeeeehHHHHHHHHHHHHhCCcEEEE-EeeC-Cccc--cccCCCEEE
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGS-YSE-TLVIENSDFLPWAMKRVSKQGGKFRR-GTVS-SFSG--LESEFDFVF 124 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~-~~~-~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~-~l~~--~~~~ad~VV 124 (267)
.+++.|.++.++++.+.. +|. .+. +..--+..++..+.+.+++.|++|+. +.|. .+.. ....+|+||
T Consensus 140 ~L~~~G~~V~v~e~~~~~-------GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~~~d~vv 212 (456)
T 2vdc_G 140 ELRAKGYEVHVYDRYDRM-------GGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELRRKHVAVL 212 (456)
T ss_dssp HHHHHTCCEEEECSSSSC-------STHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTTTBCHHHHHSSCSEEE
T ss_pred HHHHCCCeEEEEeccCCC-------CCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEeccEEEhhHhHhhCCEEE
Confidence 456678888888875311 111 010 11112456677778888899999987 4553 2211 135899999
Q ss_pred EccCcCch
Q psy5261 125 NCAGLGAQ 132 (267)
Q Consensus 125 ~aaG~~s~ 132 (267)
+|+|.+..
T Consensus 213 lAtG~~~~ 220 (456)
T 2vdc_G 213 VATGVYKA 220 (456)
T ss_dssp ECCCCCEE
T ss_pred EecCCCCC
Confidence 99999743
No 141
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=53.94 E-value=7 Score=34.67 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc--c-------------ccCCCEEEEccCcCch-hhcC
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L-------------ESEFDFVFNCAGLGAQ-ALCR 136 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~-------------~~~ad~VV~aaG~~s~-~l~~ 136 (267)
+..+...+.+.+++.|++|+. ++|++++. . .+.||.||+|+|.... .++.
T Consensus 190 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~ 256 (431)
T 1q1r_A 190 APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 256 (431)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHH
T ss_pred hHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhh
Confidence 456677888889999999987 46665532 1 2579999999998754 3544
No 142
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=53.85 E-value=8.5 Score=33.12 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=23.0
Q ss_pred ehHHHHHHHHHHHHhC-CcEEEE-EeeCCcc
Q psy5261 86 ENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFS 114 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~ 114 (267)
+...+...|.+.+++. |++++. ++|+++.
T Consensus 144 ~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll 174 (326)
T 2gjc_A 144 HAALFISTVLSKVLQLPNVKLFNATCVEDLV 174 (326)
T ss_dssp CHHHHHHHHHHHHHTSTTEEEETTEEEEEEE
T ss_pred chHHHHHHHHHHHHHhcCcEEEecceeeeee
Confidence 4567888999988885 999987 6787764
No 143
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=53.12 E-value=9.8 Score=31.58 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.+++.|++|+. ++|++++.. .+.+|.||+|+|....
T Consensus 184 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~ 248 (320)
T 1trb_A 184 KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 248 (320)
T ss_dssp HHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred HHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence 44566777888889999986 465554211 2468888888887643
No 144
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=51.83 E-value=13 Score=32.42 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=36.9
Q ss_pred eeeehHHHHHHHHHHHHhC-C-cEEEE-EeeCCccc-------------c---ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQ-G-GKFRR-GTVSSFSG-------------L---ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~-G-~~~~~-~~V~~l~~-------------~---~~~ad~VV~aaG~~s~ 132 (267)
..++...+...|.+.+++. | ++++. ++|++++. . .++||.||.|.|.+|.
T Consensus 102 ~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~ 170 (410)
T 3c96_A 102 YSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSA 170 (410)
T ss_dssp EEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred eeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEecCCccEEEEecCCCCCceEEecCEEEECCCccch
Confidence 5677788999999988763 6 47776 56655431 1 2579999999999974
No 145
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=51.71 E-value=6.6 Score=35.02 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|....
T Consensus 208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~ 266 (450)
T 1ges_A 208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPA 266 (450)
T ss_dssp HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcC
Confidence 35677888888999999987 566665421 2579999999998754
No 146
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=51.10 E-value=7.7 Score=33.58 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------ccCCCEEEEccCcCchh-hcC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------ESEFDFVFNCAGLGAQA-LCR 136 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------~~~ad~VV~aaG~~s~~-l~~ 136 (267)
..+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|..... ++.
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g~i~~D~vi~a~G~~p~~~ll~ 240 (367)
T 1xhc_A 183 EELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNSGFIEGKVKICAIGIVPNVDLAR 240 (367)
T ss_dssp HHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETTEEEECSCEEEECCEEECCHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEeeEEEECCCEEEcCEEEECcCCCcCHHHHH
Confidence 45677788889999999997 577666421 26799999999987653 444
No 147
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=50.59 E-value=9.9 Score=34.80 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc--------------------c-----------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG--------------------L-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--------------------~-----------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.+++.|++|+. ++|.+++. . .+.||.||+|+|....
T Consensus 192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 268 (565)
T 3ntd_A 192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPE 268 (565)
T ss_dssp HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence 56677888889999999997 56665542 1 2579999999998754
No 148
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=50.34 E-value=10 Score=33.92 Aligned_cols=46 Identities=22% Similarity=0.155 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
+..+...+.+.++++|++|+. ++|.+++.. .+.+|.||+|+|....
T Consensus 220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~ 281 (476)
T 3lad_A 220 DEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPV 281 (476)
T ss_dssp CHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEEC
T ss_pred CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCccc
Confidence 355677888888999999997 577666421 2568999999997643
No 149
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=49.74 E-value=7.6 Score=33.77 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=32.9
Q ss_pred eeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCch
Q psy5261 84 VIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~ 132 (267)
.++-..+...|.+.+ .|++++. ++|++++.. .++||.||.|.|.+|.
T Consensus 95 ~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 95 FTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp EEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred ccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence 344456666676654 4888876 577776432 2579999999999985
No 150
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=49.62 E-value=5.8 Score=35.31 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=37.0
Q ss_pred hHhhh--CCCcEECChhhhhcC-CCCceeEEE-eeeeeeehHHHHHHHHHHH-HhCCcEEEE-EeeCCcccc--------
Q psy5261 51 SIENL--VPVYRDAQPDELVVG-NKTYKYGSY-SETLVIENSDFLPWAMKRV-SKQGGKFRR-GTVSSFSGL-------- 116 (267)
Q Consensus 51 ~~~~~--g~~~~~l~~~el~~~-P~~~~~g~~-~~~~~vdp~~~~~~L~~~~-~~~G~~~~~-~~V~~l~~~-------- 116 (267)
.+++. +.++.++++++-... | .++. +..+..++..+.....+.+ ++.|++++. ++|+++...
T Consensus 21 ~L~~~~~~~~V~vie~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~ 96 (449)
T 3kd9_A 21 RVKRLKPEWDVKVFEATEWVSHAP----CGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENG 96 (449)
T ss_dssp HHHHHCTTSEEEEECSSSCCC----------------------------CTHHHHTTCEEETTCEEEEECSSEEEEECSS
T ss_pred HHHHhCcCCCEEEEECCCccccCC----cCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEEEEEecCCCEEEECC
Confidence 34554 667788887653322 2 1111 1123344555555444444 678999987 477766431
Q ss_pred ---ccCCCEEEEccCcC
Q psy5261 117 ---ESEFDFVFNCAGLG 130 (267)
Q Consensus 117 ---~~~ad~VV~aaG~~ 130 (267)
.+.+|.+|+|+|..
T Consensus 97 g~~~~~~d~lviAtG~~ 113 (449)
T 3kd9_A 97 GEKSYEWDYLVFANGAS 113 (449)
T ss_dssp SEEEEECSEEEECCCEE
T ss_pred ceEEEEcCEEEECCCCC
Confidence 35799999999964
No 151
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=48.71 E-value=11 Score=26.76 Aligned_cols=51 Identities=12% Similarity=-0.045 Sum_probs=37.4
Q ss_pred eeeeeehHHHHHHHHHHHHhCCcEEEE--EeeCCccc----ccc-CCCEEEEccCcCc
Q psy5261 81 ETLVIENSDFLPWAMKRVSKQGGKFRR--GTVSSFSG----LES-EFDFVFNCAGLGA 131 (267)
Q Consensus 81 ~~~~vdp~~~~~~L~~~~~~~G~~~~~--~~V~~l~~----~~~-~ad~VV~aaG~~s 131 (267)
+.|..+......+|.+.++++|.++.- +.-.+++. .++ .||.||+++-...
T Consensus 12 ptGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~v 69 (106)
T 2r48_A 12 PNGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADRSV 69 (106)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESSCC
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCCcc
Confidence 449999999999999999999998863 23333321 123 7999999987543
No 152
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=48.69 E-value=8.2 Score=34.58 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++|+. ++|++++.. .+.+|.||+|+|....
T Consensus 207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~ 265 (463)
T 2r9z_A 207 PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPN 265 (463)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEES
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcC
Confidence 35667788888999999987 566665421 2579999999998754
No 153
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=48.02 E-value=21 Score=25.53 Aligned_cols=52 Identities=4% Similarity=-0.035 Sum_probs=38.7
Q ss_pred eeeeeeehHHHHHHHHHHHHhCCcEEEE--EeeCCccc----ccc-CCCEEEEccCcCc
Q psy5261 80 SETLVIENSDFLPWAMKRVSKQGGKFRR--GTVSSFSG----LES-EFDFVFNCAGLGA 131 (267)
Q Consensus 80 ~~~~~vdp~~~~~~L~~~~~~~G~~~~~--~~V~~l~~----~~~-~ad~VV~aaG~~s 131 (267)
.+.|..+......+|.+.++++|.++.- +...+++. ..+ .||.||+|+-...
T Consensus 14 CptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~v 72 (111)
T 2kyr_A 14 CPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTP 72 (111)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESSCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCCCc
Confidence 3459999999999999999999998864 34444432 123 7999999988654
No 154
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=48.00 E-value=11 Score=33.68 Aligned_cols=45 Identities=20% Similarity=0.136 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc--c-----------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG--L-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--~-----------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.+++.|++|+. ++|++++. . .+.+|.||+|+|....
T Consensus 224 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 288 (478)
T 1v59_A 224 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence 45677888888999999987 56655532 0 2579999999998754
No 155
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=47.90 E-value=38 Score=24.58 Aligned_cols=55 Identities=7% Similarity=-0.064 Sum_probs=39.3
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-c-CCCEEEEccCcCch
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-S-EFDFVFNCAGLGAQ 132 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~-~ad~VV~aaG~~s~ 132 (267)
+.|.+.+.|..++...+++.+++.|+++.-..+.+..... . .+|.||+++-.|..
T Consensus 6 I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~ 62 (148)
T 3f6r_A 6 IVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGM 62 (148)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECS
T ss_pred EEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCC
Confidence 4455567788999999999999999776544444432222 3 78999999987763
No 156
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=47.58 E-value=9.2 Score=34.00 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL--------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~--------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. .+|++++.. .+.+|.||+|+|.-..
T Consensus 188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn 241 (437)
T 4eqs_A 188 ADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPN 241 (437)
T ss_dssp GGGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEES
T ss_pred chhHHHHHHHhhccceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceecC
Confidence 45567788888999999998 577776532 2679999999997543
No 157
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=47.42 E-value=8.1 Score=33.57 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=25.9
Q ss_pred HHhCCcEEEEEeeCCcccc----------ccCCCEEEEccCcCc
Q psy5261 98 VSKQGGKFRRGTVSSFSGL----------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 98 ~~~~G~~~~~~~V~~l~~~----------~~~ad~VV~aaG~~s 131 (267)
+.++|++|+..+|++|+.. .+.+|.+|+|+|...
T Consensus 65 ~~~~gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~ 108 (401)
T 3vrd_B 65 LRAHGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDL 108 (401)
T ss_dssp HHHTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEE
T ss_pred HHHCCCEEEEeEEEEEEccCcEEEecccceeecceeeeccCCcc
Confidence 4457999988777777532 368999999999753
No 158
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=47.28 E-value=12 Score=33.78 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
+..+...+.+.+++.|++|+. ++|.+++.. .+.+|.||+|+|....
T Consensus 238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 301 (491)
T 3urh_A 238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS 301 (491)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence 355677888888999999987 566665321 2568999999997643
No 159
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=47.20 E-value=14 Score=32.74 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|....
T Consensus 211 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 211 KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence 45667788888999999987 566665321 2579999999998754
No 160
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=46.95 E-value=11 Score=26.81 Aligned_cols=51 Identities=10% Similarity=-0.033 Sum_probs=35.6
Q ss_pred eeeeeehHHHHHHHHHHHHhCCcEEEE--EeeCCccc----ccc-CCCEEEEccCcCc
Q psy5261 81 ETLVIENSDFLPWAMKRVSKQGGKFRR--GTVSSFSG----LES-EFDFVFNCAGLGA 131 (267)
Q Consensus 81 ~~~~vdp~~~~~~L~~~~~~~G~~~~~--~~V~~l~~----~~~-~ad~VV~aaG~~s 131 (267)
+.|..+......+|.+.++++|.++.- +.-.+++. .++ .||.||+++-...
T Consensus 12 ptGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~v 69 (106)
T 2r4q_A 12 PTGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADKQV 69 (106)
T ss_dssp SCC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESSCC
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCCcc
Confidence 459999999999999999999988763 23333321 123 7999999987543
No 161
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=46.10 E-value=9.1 Score=33.87 Aligned_cols=47 Identities=6% Similarity=-0.021 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchhhc
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~l~ 135 (267)
.....+.+.++++|++++. ++|++++.. .+.+|.||+|+|.-.+.++
T Consensus 201 ~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~ 260 (430)
T 3hyw_A 201 ASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVV 260 (430)
T ss_dssp THHHHHHHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECCHHH
T ss_pred HHHHHHHHHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCchHH
Confidence 3445667778889999998 577777532 2579999999998766554
No 162
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=45.32 E-value=3.2 Score=36.06 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=43.6
Q ss_pred hHhhhCCCcEECChhhhhcC--CCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc---------cc
Q psy5261 51 SIENLVPVYRDAQPDELVVG--NKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL---------ES 118 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~--P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~---------~~ 118 (267)
.+++.| ++.+++++..... | .+.. +..+.+++..+...+.+.+++.|++++. ++|+.+... .+
T Consensus 26 ~l~~~g-~V~lie~~~~~~~~~~-~l~~---~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~id~~~~~V~~~g~~~ 100 (367)
T 1xhc_A 26 QLSQTY-EVTVIDKEPVPYYSKP-MLSH---YIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV 100 (367)
T ss_dssp HHTTTS-EEEEECSSSSCCCCST-THHH---HHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEETTTTEEEESSCEE
T ss_pred HHhhcC-CEEEEECCCCCccccc-hhHH---HHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEEEECCCCEEEECCcEE
Confidence 446667 8888887764322 1 1100 0113344444443344556677999887 466655321 36
Q ss_pred CCCEEEEccCcC
Q psy5261 119 EFDFVFNCAGLG 130 (267)
Q Consensus 119 ~ad~VV~aaG~~ 130 (267)
++|++|+|||..
T Consensus 101 ~~d~lViATGs~ 112 (367)
T 1xhc_A 101 PYDTLVLATGAR 112 (367)
T ss_dssp ECSEEEECCCEE
T ss_pred ECCEEEECCCCC
Confidence 899999999974
No 163
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=45.31 E-value=9.2 Score=34.38 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc---------------cccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG---------------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---------------~~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.+++.|++|+. ++|++++. ..+.+|.||+|+|....
T Consensus 226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~ 286 (479)
T 2hqm_A 226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSH 286 (479)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEEC
T ss_pred HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCc
Confidence 45677788888999999987 46655532 12568999999997644
No 164
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=44.33 E-value=18 Score=30.17 Aligned_cols=52 Identities=15% Similarity=0.012 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc--------------c---ccCCCEEEEccCcCch-hhcCCCC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG--------------L---ESEFDFVFNCAGLGAQ-ALCRDRK 139 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--------------~---~~~ad~VV~aaG~~s~-~l~~~~~ 139 (267)
..+...|.+.+++.|++++. ++|.+++. . .+.+|.||+|+|.... .++.+..
T Consensus 191 ~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~ 261 (335)
T 2zbw_A 191 EASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWG 261 (335)
T ss_dssp HHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSC
T ss_pred HHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcc
Confidence 34566777788888999986 45544421 1 2578999999998765 3544333
No 165
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=44.16 E-value=15 Score=32.73 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCccc---------------c---ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSG---------------L---ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---------------~---~~~ad~VV~aaG~~s~ 132 (267)
+..+...+.+.++++|++|+. ++|++++. . .+.+|.||+|+|....
T Consensus 219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~ 283 (474)
T 1zmd_A 219 DMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPF 283 (474)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcC
Confidence 356777888889999999987 56655421 1 2578999999998754
No 166
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=44.03 E-value=38 Score=24.51 Aligned_cols=53 Identities=11% Similarity=0.010 Sum_probs=37.0
Q ss_pred EeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccccc-C-CCEEEEccCcCc
Q psy5261 79 YSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLES-E-FDFVFNCAGLGA 131 (267)
Q Consensus 79 ~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~~-~-ad~VV~aaG~~s 131 (267)
.|.+...|..+++..+++.+.+.|+++....+.......+ . +|.||+++-.|.
T Consensus 6 iy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y~ 60 (147)
T 1f4p_A 6 VYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWG 60 (147)
T ss_dssp EEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEEC
T ss_pred EEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEEeCCCC
Confidence 3444556889999999999988898765434443322223 6 899999998873
No 167
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=43.84 E-value=8.7 Score=34.77 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=30.4
Q ss_pred HHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchh-hcC
Q psy5261 96 KRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQA-LCR 136 (267)
Q Consensus 96 ~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~-l~~ 136 (267)
+.++++|++|+. ++|.+++.. .+.||.||+|+|.+... |+.
T Consensus 265 ~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~ 319 (493)
T 1y56_A 265 QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPIT 319 (493)
T ss_dssp HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHH
T ss_pred HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHH
Confidence 667888999998 466665321 26899999999998764 554
No 168
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=43.55 E-value=9.8 Score=31.04 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCcEEEEEeeCCcccc---------ccCCCEEEEccCcCc
Q psy5261 90 FLPWAMKRVSKQGGKFRRGTVSSFSGL---------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 90 ~~~~L~~~~~~~G~~~~~~~V~~l~~~---------~~~ad~VV~aaG~~s 131 (267)
+...+.+.+++.|++++.++|.+++.. .+.+|.||+|+|...
T Consensus 176 ~~~~~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p 226 (297)
T 3fbs_A 176 PDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRI 226 (297)
T ss_dssp CCHHHHHHHHHTTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCEEEC
T ss_pred CCHHHHHHHHHCCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCccc
Confidence 345567788889999986566655431 257999999999763
No 169
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=43.39 E-value=14 Score=32.50 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCchhh
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s~~l 134 (267)
.+...+.+.++++|++++. ++|++++.. .+.+|.||+|+|......
T Consensus 201 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~v~~~~~~~~g~~i~~D~vv~a~G~~~~~~ 259 (430)
T 3h28_A 201 ASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEV 259 (430)
T ss_dssp THHHHHHHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECCHH
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEeCCeEEEEecCCCceEEeeeEEEECCCCccchh
Confidence 3566777888999999987 577666431 257999999999765443
No 170
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=42.82 E-value=16 Score=32.66 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s 131 (267)
..+...+.+.++++|++|+. ++|.+++.. .+.+|.||+|+|...
T Consensus 227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p 289 (483)
T 3dgh_A 227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKG 289 (483)
T ss_dssp HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence 45677788888999999987 566655320 256899999999754
No 171
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=41.92 E-value=15 Score=30.48 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=43.0
Q ss_pred HhhhCCCcEECChhhhhcC-CCCceeEEEeee-eeeehHHHHHHHHHHHHhCCc-EEEEEeeCCccc-------------
Q psy5261 52 IENLVPVYRDAQPDELVVG-NKTYKYGSYSET-LVIENSDFLPWAMKRVSKQGG-KFRRGTVSSFSG------------- 115 (267)
Q Consensus 52 ~~~~g~~~~~l~~~el~~~-P~~~~~g~~~~~-~~vdp~~~~~~L~~~~~~~G~-~~~~~~V~~l~~------------- 115 (267)
+++.|.++-+++.++..-. -..+ .+ |.. -.+.+..+.....+.+.+.+. .++...+..+..
T Consensus 25 lar~g~~v~lie~~~~gg~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g 101 (304)
T 4fk1_A 25 LGRARKQIALFDNNTNRNRVTQNS-HG--FITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDH 101 (304)
T ss_dssp HHHTTCCEEEEECSCCGGGGSSCB-CC--STTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTC
T ss_pred HHHCCCCEEEEeCCCCCCeeeeec-CC--ccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCC
Confidence 4567888877776542211 0010 01 111 235677777777777777654 454444433311
Q ss_pred cccCCCEEEEccCcCc
Q psy5261 116 LESEFDFVFNCAGLGA 131 (267)
Q Consensus 116 ~~~~ad~VV~aaG~~s 131 (267)
..+++|+||+|||...
T Consensus 102 ~~~~a~~liiATGs~p 117 (304)
T 4fk1_A 102 TKYLAERVLLATGMQE 117 (304)
T ss_dssp CEEEEEEEEECCCCEE
T ss_pred CEEEeCEEEEccCCcc
Confidence 0267999999999753
No 172
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=41.80 E-value=15 Score=26.01 Aligned_cols=52 Identities=12% Similarity=-0.037 Sum_probs=37.8
Q ss_pred eeeeeeehHHHHHHHHHHHHhCCcEEEE--EeeCCccc----ccc-CCCEEEEccCcCc
Q psy5261 80 SETLVIENSDFLPWAMKRVSKQGGKFRR--GTVSSFSG----LES-EFDFVFNCAGLGA 131 (267)
Q Consensus 80 ~~~~~vdp~~~~~~L~~~~~~~G~~~~~--~~V~~l~~----~~~-~ad~VV~aaG~~s 131 (267)
.++|..+......+|.+.++++|.++.- +...+++. ..+ .||.||+++-...
T Consensus 11 CptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~v 69 (106)
T 2m1z_A 11 CATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKV 69 (106)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccccc
Confidence 3458888888889999999999988763 34333331 123 7999999988654
No 173
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=41.59 E-value=14 Score=32.86 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH-HhCCcEEEE-EeeCCccc----------------cccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRV-SKQGGKFRR-GTVSSFSG----------------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~-~~~G~~~~~-~~V~~l~~----------------~~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.+ +++|++|+. ++|.+++. ..+.+|.||+|+|....
T Consensus 215 ~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~ 277 (468)
T 2qae_A 215 EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPF 277 (468)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence 45677888888 899999987 46655531 12578999999998764
No 174
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=39.64 E-value=27 Score=26.15 Aligned_cols=56 Identities=7% Similarity=-0.175 Sum_probs=39.4
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-----cCCCEEEEccCcCchh
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-----SEFDFVFNCAGLGAQA 133 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-----~~ad~VV~aaG~~s~~ 133 (267)
+.|.+.+.|..++...+++.+.+.|+++.-..+....... ..+|.||+++-.|...
T Consensus 5 IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~ 65 (161)
T 3hly_A 5 IGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQPS 65 (161)
T ss_dssp EEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSSCC
T ss_pred EEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcCCc
Confidence 4455567899999999999999889765433343322111 2699999999988643
No 175
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=39.34 E-value=14 Score=32.95 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
+..+...+.+.+++.|++|+. ++|.+++.. .+.+|.||+|+|....
T Consensus 217 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 280 (470)
T 1dxl_A 217 DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF 280 (470)
T ss_dssp CHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred cHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence 356677888889999999987 566555321 2568999999998754
No 176
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=39.24 E-value=6.4 Score=36.32 Aligned_cols=54 Identities=6% Similarity=0.105 Sum_probs=33.3
Q ss_pred HHHHHhCCcEEEE---EeeCCcccc-------ccCCCEEEEccCcCch-hhcCCCCceeecceEE
Q psy5261 95 MKRVSKQGGKFRR---GTVSSFSGL-------ESEFDFVFNCAGLGAQ-ALCRDRKLTPIRGQVI 148 (267)
Q Consensus 95 ~~~~~~~G~~~~~---~~V~~l~~~-------~~~ad~VV~aaG~~s~-~l~~~~~l~p~rg~~~ 148 (267)
.+.+.+.+|++.. .+|.++... .+++|.||+|||..+. ..+...++.-..|..+
T Consensus 345 ~~al~~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~D~IV~ATGf~~~~~~~~~~~i~g~~G~~l 409 (545)
T 3uox_A 345 YETYNRDNVHLVDIREAPIQEVTPEGIKTADAAYDLDVIIYATGFDAVTGSLDRIDIRGKDNVRL 409 (545)
T ss_dssp HHHTTSTTEEEEETTTSCEEEEETTEEEESSCEEECSEEEECCCCBSSSCSCTTSEEECGGGCBH
T ss_pred HHHhcCCCEEEEecCCCCceEEccCeEEeCCCeeecCEEEECCccccccccCCCceEECCCCccH
Confidence 3444556888884 466665432 3689999999999853 2333445554455443
No 177
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=39.22 E-value=16 Score=33.47 Aligned_cols=47 Identities=15% Similarity=0.321 Sum_probs=32.3
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
..++-..+...|.+.+++. ++. ++|++++.. .++||.||.|.|.+|.
T Consensus 133 ~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 133 AICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSP 197 (549)
T ss_dssp EECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCH
T ss_pred cccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcH
Confidence 3455566778888888776 444 455554321 2579999999999985
No 178
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=38.81 E-value=20 Score=29.81 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=26.8
Q ss_pred HHHHHHHHhC-CcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 92 PWAMKRVSKQ-GGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 92 ~~L~~~~~~~-G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
..+.+.+.+. |++|+. ++|.+++.. .+.+|.||+|+|....
T Consensus 212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 272 (338)
T 3itj_A 212 TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPA 272 (338)
T ss_dssp HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEEC
T ss_pred HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCC
Confidence 4455566555 999986 566555321 2568999999997643
No 179
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=38.59 E-value=20 Score=31.96 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc--------------c---ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG--------------L---ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~--------------~---~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++|+. ++|++++. . .+.+|.||+|+|....
T Consensus 210 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~ 272 (464)
T 2eq6_A 210 PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR 272 (464)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence 45677788888999999987 56655421 1 2468999999998654
No 180
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=38.18 E-value=27 Score=28.79 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=28.9
Q ss_pred HHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch-hhcCC
Q psy5261 95 MKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ-ALCRD 137 (267)
Q Consensus 95 ~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~-~l~~~ 137 (267)
.+.+++.|++++. ++|.+++.. .+.+|.||+|+|.... .++..
T Consensus 196 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~ 257 (332)
T 3lzw_A 196 VENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKN 257 (332)
T ss_dssp HHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGG
T ss_pred HHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhh
Confidence 4557889999986 566555321 2579999999997653 34433
No 181
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=37.63 E-value=26 Score=31.44 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s 131 (267)
..+...+.+.++++|++++. ++|.+++.. .+.+|.||+|+|.-.
T Consensus 225 ~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p 287 (488)
T 3dgz_A 225 QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVP 287 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCc
Confidence 45677888889999999987 565555310 146899999999754
No 182
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=37.61 E-value=58 Score=23.85 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhCCc-EEEEEeeCCccccccCCCEEEEccCcCchhhc
Q psy5261 87 NSDFLPWAMKRVSKQGG-KFRRGTVSSFSGLESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~-~~~~~~V~~l~~~~~~ad~VV~aaG~~s~~l~ 135 (267)
...++...++.+.+..+ .|.--.|..+ ..-+|.+|+|||...+.+-
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~---s~~~DyfVIaTg~S~rqv~ 49 (130)
T 2id1_A 3 IQEISKLAIEALEDIKGKDIIELDTSKL---TSLFQRMIVATGDSNRQVK 49 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEGGGT---CSSCSEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC---CcccCEEEEEEcCCHHHHH
Confidence 45666777777766544 3432233333 2458999999999887663
No 183
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=37.60 E-value=22 Score=29.44 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=26.1
Q ss_pred HHHHHHHhCCcEEEE-EeeCCcccc------------------ccCCCEEEEccCcCch
Q psy5261 93 WAMKRVSKQGGKFRR-GTVSSFSGL------------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~-~~V~~l~~~------------------~~~ad~VV~aaG~~s~ 132 (267)
.+.+.+++.|++|+. ++|+++... .+.+|.||+|+|....
T Consensus 195 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 253 (319)
T 3cty_A 195 AYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQ 253 (319)
T ss_dssp HHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEEC
T ss_pred HHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccC
Confidence 355666788999886 455544211 2578888888887543
No 184
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=36.81 E-value=35 Score=32.10 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccccc-CCCEEEEccCcC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGLES-EFDFVFNCAGLG 130 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~~~-~ad~VV~aaG~~ 130 (267)
..++..+.+.+++.|++++. +.|... .+ .+|+||+|||..
T Consensus 425 ~~~~~~~~~~~~~~gv~~~~~~~v~~~---~~~~~d~lviAtG~~ 466 (671)
T 1ps9_A 425 YETLRYYRRMIEVTGVTLKLNHTVTAD---QLQAFDETILASGIV 466 (671)
T ss_dssp HHHHHHHHHHHHHHTCEEEESCCCCSS---SSCCSSEEEECCCEE
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEecHH---HhhcCCEEEEccCCC
Confidence 34566677778888999988 455432 35 899999999984
No 185
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=36.41 E-value=17 Score=32.29 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc---------------cccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG---------------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---------------~~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++|+. ++|++++. ..+.+|.||+|+|....
T Consensus 212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 272 (464)
T 2a8x_A 212 ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN 272 (464)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence 45667788888899999987 46655531 12568999999998654
No 186
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=36.27 E-value=18 Score=32.21 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc------------cccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG------------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~------------~~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++++. ++|++++. ..+.+|.||+|+|....
T Consensus 212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~ 269 (458)
T 1lvl_A 212 SELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPR 269 (458)
T ss_dssp HHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcC
Confidence 45667788888889999986 45555431 13679999999998654
No 187
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=36.00 E-value=9.3 Score=33.97 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=30.0
Q ss_pred ehHHHHHHHHHHHHhCCcEEEE-EeeCCccc---------------cccCCCEEEEccCcCc
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSG---------------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---------------~~~~ad~VV~aaG~~s 131 (267)
++..+...+.+.+++.|++++. ++|..+.. ..+++|.+|+|+|...
T Consensus 56 ~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p 117 (452)
T 2cdu_A 56 DPRGLFYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKP 117 (452)
T ss_dssp CGGGGBSCCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred CHHHhhhcCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCc
Confidence 3444433445556778999876 56665531 1267999999999754
No 188
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=35.84 E-value=3.7 Score=37.90 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=30.9
Q ss_pred hCCcEEEE---EeeCCcccc--------ccCCCEEEEccCcCchh-hcCCCCceeecceEE
Q psy5261 100 KQGGKFRR---GTVSSFSGL--------ESEFDFVFNCAGLGAQA-LCRDRKLTPIRGQVI 148 (267)
Q Consensus 100 ~~G~~~~~---~~V~~l~~~--------~~~ad~VV~aaG~~s~~-l~~~~~l~p~rg~~~ 148 (267)
+.++++.. ..|.++... .+++|.||+|||..+.. .+...++.-..|..+
T Consensus 342 ~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~l 402 (540)
T 3gwf_A 342 RPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHI 402 (540)
T ss_dssp STTEEEEETTTSCEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCBH
T ss_pred CCCEEEEeCCCCCccEEecCeEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCcCH
Confidence 45788883 456555432 26799999999998764 334445544445443
No 189
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=35.44 E-value=6.4 Score=36.14 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=29.6
Q ss_pred CCcEEE---EEeeCCcccc-------ccCCCEEEEccCcCch-hhcCCCCceeecceEE
Q psy5261 101 QGGKFR---RGTVSSFSGL-------ESEFDFVFNCAGLGAQ-ALCRDRKLTPIRGQVI 148 (267)
Q Consensus 101 ~G~~~~---~~~V~~l~~~-------~~~ad~VV~aaG~~s~-~l~~~~~l~p~rg~~~ 148 (267)
-+|++. ...|.++... .+.+|.||.|||..+. .++...++....|..+
T Consensus 351 ~~v~lv~~~~~~i~~i~~~gv~~~d~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~~l 409 (542)
T 1w4x_A 351 DNVHLVDTLSAPIETITPRGVRTSEREYELDSLVLATGFDALTGALFKIDIRGVGNVAL 409 (542)
T ss_dssp TTEEEEETTTSCEEEECSSEEEESSCEEECSEEEECCCCCCTTHHHHTSEEECGGGCBH
T ss_pred CCEEEEecCCCCceEEcCCeEEeCCeEEecCEEEEcCCccccccCcCceeeECCCCCCH
Confidence 456666 2345444322 3689999999999973 4444555555555544
No 190
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=34.67 E-value=22 Score=30.07 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch-hhcCC
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ-ALCRD 137 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~-~l~~~ 137 (267)
.+...|.+..++.|++|+. ++|.+++.. .+.+|.||+|+|.... .++..
T Consensus 203 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~ 270 (360)
T 3ab1_A 203 KTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLAR 270 (360)
T ss_dssp HHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGG
T ss_pred HHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHh
Confidence 4566677777888999986 466554311 2579999999997654 24443
No 191
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=34.54 E-value=2.5 Score=37.50 Aligned_cols=73 Identities=10% Similarity=-0.096 Sum_probs=41.9
Q ss_pred hCCCcEECChhhhhcC-CCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc----------ccCCCEE
Q psy5261 55 LVPVYRDAQPDELVVG-NKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL----------ESEFDFV 123 (267)
Q Consensus 55 ~g~~~~~l~~~el~~~-P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~----------~~~ad~V 123 (267)
.+.++.++++++-... | .+. .+..+..++..+...+.+.+++.|++++..+|+.++.. .+.+|.+
T Consensus 26 ~g~~Vtlie~~~~~~~~~-~~~---~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~v~~~~g~~i~~d~l 101 (430)
T 3h28_A 26 PDLKITLISDRPYFGFTP-AFP---HLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYL 101 (430)
T ss_dssp TTCEEEEECSSSEEECGG-GHH---HHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEE
T ss_pred CCCeEEEECCCCCCCcCC-Ccc---hhccCccCHHHHHHHHHHHHHhcCCEEEEEEEEEEECCCCEEEECCCcEEECCEE
Confidence 4567777777653322 2 110 00113333344444455556678999887666665432 2679999
Q ss_pred EEccCcCc
Q psy5261 124 FNCAGLGA 131 (267)
Q Consensus 124 V~aaG~~s 131 (267)
|+|+|...
T Consensus 102 iiAtG~~~ 109 (430)
T 3h28_A 102 VIATGPKL 109 (430)
T ss_dssp EECCCCEE
T ss_pred EEcCCccc
Confidence 99999763
No 192
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=34.34 E-value=27 Score=30.80 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCCcccc-----------ccCCCEEEEccCcCch
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------~~~ad~VV~aaG~~s~ 132 (267)
+..+...+.+.++++ ++++. ++|.+++.. .+.||.||+|+|....
T Consensus 189 ~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~ 245 (449)
T 3kd9_A 189 DKEVTDILEEKLKKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPN 245 (449)
T ss_dssp CHHHHHHHHHHHTTT-SEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEEC
T ss_pred CHHHHHHHHHHHHhC-cEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccC
Confidence 355677788888888 99987 466655321 2579999999998754
No 193
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=33.69 E-value=22 Score=31.69 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc---------------------cccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG---------------------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~---------------------~~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++|+. ++|++++. ..+.+|.||+|+|....
T Consensus 228 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~ 294 (478)
T 3dk9_A 228 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPN 294 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEES
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccC
Confidence 45677788888999999986 55555431 11468999999997643
No 194
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=32.97 E-value=28 Score=32.01 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
..+...+.+.+++.|++|+. ..|..++.. .+.+|.|++|+|--.
T Consensus 263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~P 319 (542)
T 4b1b_A 263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKG 319 (542)
T ss_dssp HHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred hhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccC
Confidence 34667788899999999988 466666432 246899999999653
No 195
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=32.91 E-value=7.3 Score=34.82 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhC--------CcEEEE-EeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 89 DFLPWAMKRVSKQ--------GGKFRR-GTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 89 ~~~~~L~~~~~~~--------G~~~~~-~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
.++.+|++.+.+. |++++. ++|++|+.. .++||+||+|++.+.
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~ 270 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGV 270 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHH
T ss_pred HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHH
Confidence 5677777776554 677776 577777432 257999999999875
No 196
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=32.70 E-value=57 Score=23.72 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhCCc-EEEEEeeCCccccccCCCEEEEccCcCchhhc
Q psy5261 87 NSDFLPWAMKRVSKQGG-KFRRGTVSSFSGLESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~-~~~~~~V~~l~~~~~~ad~VV~aaG~~s~~l~ 135 (267)
...++...++.+....+ .+.--.|..+ ..-+|.+|+|||...+.+-
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~---s~~~DyfVIatg~S~rqv~ 49 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNMKGI---SLIADFFLICHGNSEKQVQ 49 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBTT---BC--CEEEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC---CcccCEEEEEEcCCHHHHH
Confidence 44566777777766544 3432234433 2458999999999887663
No 197
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=32.65 E-value=38 Score=29.93 Aligned_cols=40 Identities=8% Similarity=-0.030 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCcEEEEEeeCCccc-----------cccCCCEEEEccCcCc
Q psy5261 92 PWAMKRVSKQGGKFRRGTVSSFSG-----------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 92 ~~L~~~~~~~G~~~~~~~V~~l~~-----------~~~~ad~VV~aaG~~s 131 (267)
..+.+.+++.|++++..++..+.. ..+++|++|+|+|...
T Consensus 95 ~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p 145 (455)
T 1ebd_A 95 GGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRP 145 (455)
T ss_dssp HHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEE
T ss_pred HHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCC
Confidence 345566778899998732211211 1367999999999854
No 198
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=31.52 E-value=18 Score=32.42 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------------ccCCCEEEEccCcCch
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------------~~~ad~VV~aaG~~s~ 132 (267)
..+...+.+.++++|++|+. ++|.+++.. .+.+|.||+|+|....
T Consensus 226 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~ 287 (482)
T 1ojt_A 226 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPN 287 (482)
T ss_dssp HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEEC
T ss_pred HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcC
Confidence 45667788888999999987 466555311 2468999999998754
No 199
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=31.39 E-value=51 Score=32.84 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHhCCcEEEEE-eeC--Ccccc---ccCCCEEEEccCcC
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRRG-TVS--SFSGL---ESEFDFVFNCAGLG 130 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~~-~V~--~l~~~---~~~ad~VV~aaG~~ 130 (267)
+...+....+.+++.|++|+.. .|. .+... .+.+|+||+|+|.+
T Consensus 237 ~~~~~~~~~~~~~~~gv~~~~~~~v~~~~v~~~~~~~~~~d~vvlAtGa~ 286 (1025)
T 1gte_A 237 PYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLP 286 (1025)
T ss_dssp CHHHHHHHHHHHHTTTCEEEESCCBSTTSBCHHHHHHTTCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHCCcEEEcccEeccceEEhhhcCccCCCEEEEecCCC
Confidence 3456667777888899999984 443 22211 36899999999986
No 200
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=31.25 E-value=23 Score=31.29 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=25.3
Q ss_pred HHhCCcEEEE-EeeCCcccc---------------ccCCCEEEEccCcCch
Q psy5261 98 VSKQGGKFRR-GTVSSFSGL---------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 98 ~~~~G~~~~~-~~V~~l~~~---------------~~~ad~VV~aaG~~s~ 132 (267)
.+++|++++. ++|+.+... .+.+|++|+|||....
T Consensus 67 ~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~ 117 (437)
T 4eqs_A 67 YDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN 117 (437)
T ss_dssp HHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEEC
T ss_pred HHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccc
Confidence 4567999887 677776432 2569999999998643
No 201
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=30.88 E-value=35 Score=30.34 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCcEEEEEeeCCccc---------cccCCCEEEEccCcC
Q psy5261 92 PWAMKRVSKQGGKFRRGTVSSFSG---------LESEFDFVFNCAGLG 130 (267)
Q Consensus 92 ~~L~~~~~~~G~~~~~~~V~~l~~---------~~~~ad~VV~aaG~~ 130 (267)
..+...+++.|++++..++..+.. ..+++|+||+|+|..
T Consensus 112 ~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~~ 159 (478)
T 3dk9_A 112 AIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGM 159 (478)
T ss_dssp HHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCEE
T ss_pred HHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCCC
Confidence 344555677899998743322211 136899999999964
No 202
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=30.79 E-value=86 Score=23.12 Aligned_cols=50 Identities=8% Similarity=0.126 Sum_probs=33.3
Q ss_pred eeeehHHHHHHHHHHHHhCCc-EEEEEeeCCccccccCCCEEEEccCcCchhhc
Q psy5261 83 LVIENSDFLPWAMKRVSKQGG-KFRRGTVSSFSGLESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~-~~~~~~V~~l~~~~~~ad~VV~aaG~~s~~l~ 135 (267)
...++..++...++.+....+ .|.--.|..+ ..-+|.+|+|+|...+.+-
T Consensus 15 ~~~~~~~l~~~i~~al~dkKa~DI~vlDv~~~---s~~~DyfVIatg~S~rqv~ 65 (136)
T 3ups_A 15 TSFDPEMLLKLVTDSLDDDQALEIATIPLAGK---SSIADYMVIASGRSSRQVT 65 (136)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEEEECTTT---CSSCSEEEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCeEEEECCCC---CcccCEEEEEEcCCHHHHH
Confidence 556777888888888876654 3432244433 2458999999999877653
No 203
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=30.77 E-value=4.5 Score=37.41 Aligned_cols=48 Identities=8% Similarity=0.184 Sum_probs=29.4
Q ss_pred hCCcEEE---EEeeCCcccc-------ccCCCEEEEccCcCchh-hcCCCCceeecceE
Q psy5261 100 KQGGKFR---RGTVSSFSGL-------ESEFDFVFNCAGLGAQA-LCRDRKLTPIRGQV 147 (267)
Q Consensus 100 ~~G~~~~---~~~V~~l~~~-------~~~ad~VV~aaG~~s~~-l~~~~~l~p~rg~~ 147 (267)
+.+|++. ..+|.++... .+.+|.||+|||..+.. .+...++.-..|..
T Consensus 355 ~~~V~lvd~~~~~I~~it~~gv~~~dG~~~~D~iI~ATGf~~~~~~~~~~~i~g~~G~~ 413 (549)
T 4ap3_A 355 RDNVELVDLRSTPIVGMDETGIVTTGAHYDLDMIVLATGFDAMTGSLDKLEIVGRGGRT 413 (549)
T ss_dssp STTEEEEETTTSCEEEEETTEEEESSCEEECSEEEECCCEEESSTTGGGSEEECGGGCB
T ss_pred CCCEEEEeCCCCCceEEeCCcEEeCCCceecCEEEECCcccccccccCceeEECCCCcC
Confidence 3478887 3455555332 36899999999998764 34344444444443
No 204
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=30.42 E-value=53 Score=24.51 Aligned_cols=57 Identities=9% Similarity=-0.062 Sum_probs=41.4
Q ss_pred EEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCc-ccc----c-cCCCEEEEccCcCchh
Q psy5261 77 GSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSF-SGL----E-SEFDFVFNCAGLGAQA 133 (267)
Q Consensus 77 g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l-~~~----~-~~ad~VV~aaG~~s~~ 133 (267)
.+.|.+.+.|..+++..+++.+++.|+++.-..+... ... . ..+|.||+++-.|...
T Consensus 8 ~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~ 70 (159)
T 3fni_A 8 GVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAASA 70 (159)
T ss_dssp EEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTTSH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCCCC
Confidence 3456667899999999999999999987654444433 211 1 3699999999988754
No 205
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=30.01 E-value=23 Score=31.25 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=26.2
Q ss_pred HHHHhCCcEEEE-EeeCCcccc----------ccCCCEEEEccCcCc
Q psy5261 96 KRVSKQGGKFRR-GTVSSFSGL----------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 96 ~~~~~~G~~~~~-~~V~~l~~~----------~~~ad~VV~aaG~~s 131 (267)
+.+++.|++++. ++|+.+... .+.+|.+|+|+|...
T Consensus 68 ~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p 114 (431)
T 1q1r_A 68 DAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRP 114 (431)
T ss_dssp HHHHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEE
T ss_pred HHHHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCc
Confidence 445678999887 567666431 267999999999854
No 206
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=30.00 E-value=24 Score=30.82 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=26.6
Q ss_pred HHHHhCCcEEEE-EeeCCcccc----------ccCCCEEEEccCcCc
Q psy5261 96 KRVSKQGGKFRR-GTVSSFSGL----------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 96 ~~~~~~G~~~~~-~~V~~l~~~----------~~~ad~VV~aaG~~s 131 (267)
+.+++.|++++. ++|+.+... .+.+|++|+|+|...
T Consensus 65 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p 111 (410)
T 3ef6_A 65 DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA 111 (410)
T ss_dssp THHHHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEE
T ss_pred HHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcc
Confidence 345567999998 488776532 257999999999753
No 207
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=29.84 E-value=28 Score=30.65 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=23.0
Q ss_pred CCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCch
Q psy5261 101 QGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 101 ~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s~ 132 (267)
.|++|+. ++|++++.. .+.+|.||+|+|....
T Consensus 329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~ 378 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ 378 (463)
T ss_dssp CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence 5888887 566665321 1579999999998755
No 208
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=29.64 E-value=25 Score=33.26 Aligned_cols=50 Identities=10% Similarity=0.059 Sum_probs=35.7
Q ss_pred eeeehHHHHHHHHHHHHhC-CcEEEE-EeeCCccccccCCCEEEEccCcCch
Q psy5261 83 LVIENSDFLPWAMKRVSKQ-GGKFRR-GTVSSFSGLESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~-G~~~~~-~~V~~l~~~~~~ad~VV~aaG~~s~ 132 (267)
+..+...+...+.+.+++. |++++. ++|+.-....+.+|.||+|+|....
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~ 489 (690)
T 3k30_A 438 GLSAWGRVKEYREAVLAELPNVEIYRESPMTGDDIVEFGFEHVITATGATWR 489 (690)
T ss_dssp TCGGGGHHHHHHHHHHHTCTTEEEESSCCCCHHHHHHTTCCEEEECCCEEEC
T ss_pred chhHHHHHHHHHHHHHHHcCCCEEEECCeecHHHHhhcCCCEEEEcCCCccc
Confidence 3446677888888888887 999887 4443211124789999999998743
No 209
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=29.54 E-value=56 Score=24.45 Aligned_cols=54 Identities=2% Similarity=-0.132 Sum_probs=37.7
Q ss_pred EEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccc-cCCCEEEEccCcC
Q psy5261 77 GSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLG 130 (267)
Q Consensus 77 g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~ 130 (267)
.+.|.+.+.|..++...+++.+.+.|+++.-..+....... ..+|.||+.+-.|
T Consensus 13 ~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~pt~ 67 (167)
T 1ykg_A 13 TIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQ 67 (167)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEEECB
T ss_pred EEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhccCCeEEEEEccc
Confidence 35566678899999999999998878654333333322222 3689999998888
No 210
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=28.93 E-value=43 Score=29.71 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=22.1
Q ss_pred CeEEEeC--CCchhhhccHHHHHHHHHHHHhhhC
Q psy5261 227 LVIHNYG--HGGYGVTTAPGTSRYAVQLVKQALD 258 (267)
Q Consensus 227 dl~~~~G--~gg~G~t~a~~~a~~la~li~~~l~ 258 (267)
+||++.. |-|.|+..+..+|+..|+.|+..|.
T Consensus 459 gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~ 492 (501)
T 4dgk_A 459 NLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDLI 492 (501)
T ss_dssp TEEECCCH------HHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 4888743 4467898889999999999988774
No 211
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=28.85 E-value=32 Score=30.73 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhCCcEEEE-EeeCC-ccc--cccCCCEEEEccCcCc
Q psy5261 87 NSDFLPWAMKRVSKQGGKFRR-GTVSS-FSG--LESEFDFVFNCAGLGA 131 (267)
Q Consensus 87 p~~~~~~L~~~~~~~G~~~~~-~~V~~-l~~--~~~~ad~VV~aaG~~s 131 (267)
...+...+.+.+++.|++|+. ..|.. +.. ..+.+|+||+|+|...
T Consensus 58 ~~~~~~~~~~~~~~~gv~~~~~~~v~~~V~~~~~~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 58 VKNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAED 106 (460)
T ss_dssp GGGHHHHHHHHHTSTTEEEEBSCCBTTTBCHHHHHHHSSEEEECCCCCE
T ss_pred HHHHHHHHHHHHHhCCcEEEeeeEEeeEEEeccceEEcCEEEEecCcCC
Confidence 345677788888889999987 45531 211 1357999999999984
No 212
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=28.80 E-value=23 Score=31.62 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=31.2
Q ss_pred ehHHHHHHHHHHHHhCCcEEEEE-eeCC-ccc--cccCCCEEEEccCcCc
Q psy5261 86 ENSDFLPWAMKRVSKQGGKFRRG-TVSS-FSG--LESEFDFVFNCAGLGA 131 (267)
Q Consensus 86 dp~~~~~~L~~~~~~~G~~~~~~-~V~~-l~~--~~~~ad~VV~aaG~~s 131 (267)
....+...+.+.+++.|++|+.. +|.. +.. ..+.+|+||+|+|...
T Consensus 59 ~~~~~~~~~~~~~~~~~v~~~~~v~v~~~v~~~~~~~~~d~lViAtG~~~ 108 (456)
T 1lqt_A 59 KIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQS 108 (456)
T ss_dssp GGGGGHHHHHHHHTSTTEEEEESCCBTTTBCHHHHHHHSSEEEECCCCCE
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeEEECCEEEECCCeEeCCEEEEeeCCCC
Confidence 34456677777788889999873 4321 111 1357999999999964
No 213
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=28.60 E-value=33 Score=30.49 Aligned_cols=40 Identities=5% Similarity=-0.060 Sum_probs=26.3
Q ss_pred HHHHHHHhCCcEEEE-EeeCC------cc--c---cc------cCCCEEEEccCcCch
Q psy5261 93 WAMKRVSKQGGKFRR-GTVSS------FS--G---LE------SEFDFVFNCAGLGAQ 132 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~-~~V~~------l~--~---~~------~~ad~VV~aaG~~s~ 132 (267)
.+.+.+++.|++++. +.+.. +. . .. +++|+||+|+|.+..
T Consensus 101 ~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~ 158 (478)
T 1v59_A 101 GIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT 158 (478)
T ss_dssp HHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred HHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC
Confidence 355566778999987 33221 11 0 13 679999999998764
No 214
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=28.27 E-value=16 Score=32.34 Aligned_cols=77 Identities=10% Similarity=-0.078 Sum_probs=40.6
Q ss_pred hHhhh--CCCcEECChhhhhcC-CCCceeEE-Eeeeeee-ehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------
Q psy5261 51 SIENL--VPVYRDAQPDELVVG-NKTYKYGS-YSETLVI-ENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------- 116 (267)
Q Consensus 51 ~~~~~--g~~~~~l~~~el~~~-P~~~~~g~-~~~~~~v-dp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------- 116 (267)
.+++. +.++.+++++.-... | .+. .+..+.. ++..+...+.+.+++.|++++. ++|+++...
T Consensus 20 ~L~~~~~g~~V~vie~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~ 95 (452)
T 3oc4_A 20 ASRKKYPQAEISLIDKQATVGYLS----GGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTR 95 (452)
T ss_dssp HHHHHCSSSEEEEECSSSCCSSCC----C----------------CCCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEE
T ss_pred HHHhhCcCCcEEEEECCCCCcccC----ccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEe
Confidence 34555 778888887764333 3 111 1111211 2222222244556778999876 577665321
Q ss_pred -----ccCCCEEEEccCcCc
Q psy5261 117 -----ESEFDFVFNCAGLGA 131 (267)
Q Consensus 117 -----~~~ad~VV~aaG~~s 131 (267)
.+++|.+|+|+|...
T Consensus 96 ~~~~~~~~~d~lviAtG~~p 115 (452)
T 3oc4_A 96 KEEQQWYSYDKLILATGASQ 115 (452)
T ss_dssp TTEEEEEECSEEEECCCCCB
T ss_pred cCceEEEEcCEEEECCCccc
Confidence 257999999999853
No 215
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=28.10 E-value=48 Score=25.28 Aligned_cols=53 Identities=9% Similarity=-0.048 Sum_probs=37.9
Q ss_pred eeeeehHHHHHHHHHHHHh-CCcEEEEEeeCCccccc-cCCCEEEEccCcCchhh
Q psy5261 82 TLVIENSDFLPWAMKRVSK-QGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 82 ~~~vdp~~~~~~L~~~~~~-~G~~~~~~~V~~l~~~~-~~ad~VV~aaG~~s~~l 134 (267)
....|..+++..+++.+++ .|+++....+.+..... ..+|.||+++-.|...+
T Consensus 13 S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y~g~~ 67 (188)
T 2ark_A 13 TRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNMGLV 67 (188)
T ss_dssp CSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECBTTBC
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCccCCcC
Confidence 3567889999999999988 88776544444432222 37999999999886554
No 216
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=28.06 E-value=31 Score=29.64 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=26.9
Q ss_pred HHHHHHhCCcEEEE-EeeCCcccc---------ccCCCEEEEccCcCc
Q psy5261 94 AMKRVSKQGGKFRR-GTVSSFSGL---------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 94 L~~~~~~~G~~~~~-~~V~~l~~~---------~~~ad~VV~aaG~~s 131 (267)
+.+.+++.|++++. ++|+.+... .+++|.+|+|+|...
T Consensus 66 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~d~lviAtG~~p 113 (384)
T 2v3a_A 66 PGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEP 113 (384)
T ss_dssp HHHHHHHTTCEEECSCCCCEEEGGGTEEEETTEEEECSEEEECCCEEE
T ss_pred HHHHHHhCCcEEEeCCEEEEEECCCCEEEECCcEEECCEEEEeCCCCc
Confidence 34445678999886 567665431 367999999999854
No 217
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=27.99 E-value=15 Score=33.37 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=26.0
Q ss_pred HHHHHHHHhCC-cEEEE-EeeCCcccc----------------------ccCCCEEEEccCcC
Q psy5261 92 PWAMKRVSKQG-GKFRR-GTVSSFSGL----------------------ESEFDFVFNCAGLG 130 (267)
Q Consensus 92 ~~L~~~~~~~G-~~~~~-~~V~~l~~~----------------------~~~ad~VV~aaG~~ 130 (267)
.++...++++| ++|+. ++|++|... .++|+.||+|+|.+
T Consensus 225 ~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~ 287 (504)
T 1n4w_A 225 KTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSL 287 (504)
T ss_dssp TTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHH
T ss_pred HHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCC
Confidence 34555666675 88887 566665211 13578999999998
No 218
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=27.72 E-value=32 Score=30.57 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=24.8
Q ss_pred HHHHHHhCCcEEEEEeeCCccc-------cccCCCEEEEccCcCc
Q psy5261 94 AMKRVSKQGGKFRRGTVSSFSG-------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 94 L~~~~~~~G~~~~~~~V~~l~~-------~~~~ad~VV~aaG~~s 131 (267)
+.+.+++.|++++..++..+.. ..+++|++|+|+|...
T Consensus 98 ~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p 142 (463)
T 2r9z_A 98 WDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRP 142 (463)
T ss_dssp HHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEE
T ss_pred HHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCCCC
Confidence 4445577899998743322211 1367999999999754
No 219
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=27.66 E-value=49 Score=29.58 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=35.9
Q ss_pred eeehHHHHHHHHHHHHhC-CcEEEEEeeCCccccccCCCEEEEccCcCc
Q psy5261 84 VIENSDFLPWAMKRVSKQ-GGKFRRGTVSSFSGLESEFDFVFNCAGLGA 131 (267)
Q Consensus 84 ~vdp~~~~~~L~~~~~~~-G~~~~~~~V~~l~~~~~~ad~VV~aaG~~s 131 (267)
.+|=..|...+.+.+++. ++++++.+|++|. ++.||+|||.-+
T Consensus 94 ~vDR~~f~~~~~~~le~~pni~l~q~eV~~l~-----~~~vIiatG~~~ 137 (443)
T 3g5s_A 94 AVDREEFSGYITERLTGHPLLEVVREEVREIP-----PGITVLATGPLT 137 (443)
T ss_dssp EECHHHHHHHHHHHHHTCTTEEEECSCCCSCC-----SSSEEECCCTTC
T ss_pred cCCcHHHHHHHHHHHHcCCCeEEEhhhhhhhc-----CCCEEEeCCCCc
Confidence 588888999999888775 7888877888874 679999999864
No 220
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=27.33 E-value=1.2e+02 Score=26.58 Aligned_cols=59 Identities=5% Similarity=-0.113 Sum_probs=44.7
Q ss_pred EEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc--------ccCCCEEEEccCcCchhhc
Q psy5261 77 GSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL--------ESEFDFVFNCAGLGAQALC 135 (267)
Q Consensus 77 g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~--------~~~ad~VV~aaG~~s~~l~ 135 (267)
.+.|.+.+.|..++..++++.+.+.|++....++.+++.. -.+|+.+|+++=.+...+.
T Consensus 269 ~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~ 335 (410)
T 4dik_A 269 TVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIH 335 (410)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSC
T ss_pred eeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCC
Confidence 3567778999999999999999999988765455555432 1489999998877765543
No 221
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=27.03 E-value=47 Score=30.07 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCccc----------------c-----ccCCCEEEEccCcCc
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSG----------------L-----ESEFDFVFNCAGLGA 131 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~----------------~-----~~~ad~VV~aaG~~s 131 (267)
..+...+.+.+++.|++|+. .++..++. . .+.+|.||+|+|.-.
T Consensus 250 ~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p 315 (519)
T 3qfa_A 250 QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA 315 (519)
T ss_dssp HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence 45677788888999999986 34333311 0 135899999999754
No 222
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=26.82 E-value=29 Score=31.39 Aligned_cols=41 Identities=10% Similarity=-0.087 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCcEEEE-EeeCCcccc-------------------------ccCCCEEEEccCc
Q psy5261 89 DFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------------------------ESEFDFVFNCAGL 129 (267)
Q Consensus 89 ~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------------------------~~~ad~VV~aaG~ 129 (267)
.+..+|...+++.+..+.+ ++|++++.. .+.|+.||+|+|.
T Consensus 146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~ 212 (501)
T 4b63_A 146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG 212 (501)
T ss_dssp HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence 4556666666666665665 566655310 1468999999994
No 223
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=25.80 E-value=19 Score=31.85 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=25.8
Q ss_pred HHHHHHhCCcEEEE-EeeCCccc------------c---ccCCCEEEEccCcCc
Q psy5261 94 AMKRVSKQGGKFRR-GTVSSFSG------------L---ESEFDFVFNCAGLGA 131 (267)
Q Consensus 94 L~~~~~~~G~~~~~-~~V~~l~~------------~---~~~ad~VV~aaG~~s 131 (267)
+.+.+++.|++++. ++|..+.. . .+++|++|+|+|...
T Consensus 62 ~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p 115 (447)
T 1nhp_A 62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP 115 (447)
T ss_dssp CHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred CHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence 34455677999876 56654421 0 157999999999754
No 224
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=25.63 E-value=41 Score=29.89 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=25.1
Q ss_pred HHHHHHhCCcEEEEEeeCCccc-------cccCCCEEEEccCcCch
Q psy5261 94 AMKRVSKQGGKFRRGTVSSFSG-------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 94 L~~~~~~~G~~~~~~~V~~l~~-------~~~~ad~VV~aaG~~s~ 132 (267)
+...+++.|++++..++..+.. ..+++|+||+|+|....
T Consensus 99 ~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs~p~ 144 (464)
T 2eq6_A 99 VGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPL 144 (464)
T ss_dssp HHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEEC
T ss_pred HHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCCCCC
Confidence 3455677899998732211111 13689999999998643
No 225
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=25.51 E-value=9.9 Score=33.32 Aligned_cols=79 Identities=5% Similarity=-0.134 Sum_probs=43.6
Q ss_pred hhHhhhCCC--cEECChhhhhcC--CCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEE-EeeCCcccc--------
Q psy5261 50 ASIENLVPV--YRDAQPDELVVG--NKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR-GTVSSFSGL-------- 116 (267)
Q Consensus 50 ~~~~~~g~~--~~~l~~~el~~~--P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~-------- 116 (267)
..+++.|.+ +.+++++.-... | .+... +..+...+..+.....+.+++.|++++. ++|+.+...
T Consensus 26 ~~L~~~g~~~~V~lie~~~~~~y~~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~ 102 (415)
T 3lxd_A 26 IALRQNGFEGRVLVIGREPEIPYERP-PLSKE--YLAREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGD 102 (415)
T ss_dssp HHHHHTTCCSCEEEEESSSSCCBCSG-GGGTT--TTTTSSCSGGGBSSCHHHHHHTTEEEEETCCEEEEETTTTEEEETT
T ss_pred HHHHccCcCCCEEEEecCCCCCcCcc-cCCHH--HHcCCCCHHHhccCCHHHHHHCCcEEEeCCEEEEEECCCCEEEECC
Confidence 345666766 667776543211 1 01000 1112223333333344556678999988 478776432
Q ss_pred --ccCCCEEEEccCcCc
Q psy5261 117 --ESEFDFVFNCAGLGA 131 (267)
Q Consensus 117 --~~~ad~VV~aaG~~s 131 (267)
.+.+|++|+|+|...
T Consensus 103 g~~~~~d~lvlAtG~~~ 119 (415)
T 3lxd_A 103 GSAIEYGKLIWATGGDP 119 (415)
T ss_dssp SCEEEEEEEEECCCEEC
T ss_pred CCEEEeeEEEEccCCcc
Confidence 257999999999643
No 226
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=25.30 E-value=53 Score=29.40 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCcEEEEEeeCCccc---------------c---ccCCCEEEEccCcCc
Q psy5261 92 PWAMKRVSKQGGKFRRGTVSSFSG---------------L---ESEFDFVFNCAGLGA 131 (267)
Q Consensus 92 ~~L~~~~~~~G~~~~~~~V~~l~~---------------~---~~~ad~VV~aaG~~s 131 (267)
..+.+.+++.|++++..++..+.. . .+.+|.+|+|+|...
T Consensus 99 ~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p 156 (499)
T 1xdi_A 99 ADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP 156 (499)
T ss_dssp HHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred HHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence 345666778899998744433222 1 257899999999753
No 227
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=25.23 E-value=40 Score=29.87 Aligned_cols=41 Identities=12% Similarity=-0.045 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCcEEEEEeeCCccc------------cccCCCEEEEccCcCch
Q psy5261 92 PWAMKRVSKQGGKFRRGTVSSFSG------------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 92 ~~L~~~~~~~G~~~~~~~V~~l~~------------~~~~ad~VV~aaG~~s~ 132 (267)
..+.+.+++.|++++...+..+.. ..+++|.+|+|+|..+.
T Consensus 95 ~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~ 147 (464)
T 2a8x_A 95 AGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTR 147 (464)
T ss_dssp HHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEEC
T ss_pred HHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCC
Confidence 345667778899998632211211 12579999999998653
No 228
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=25.22 E-value=44 Score=29.59 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=24.8
Q ss_pred HHHHHHhCCcEEEEEeeCCc-------c--c---cccCCCEEEEccCcCch
Q psy5261 94 AMKRVSKQGGKFRRGTVSSF-------S--G---LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 94 L~~~~~~~G~~~~~~~V~~l-------~--~---~~~~ad~VV~aaG~~s~ 132 (267)
+.+.+++.|++++...+..+ . . ..+++|.||+|+|....
T Consensus 102 ~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~ 152 (470)
T 1dxl_A 102 IEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK 152 (470)
T ss_dssp HHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEEC
T ss_pred HHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCC
Confidence 45566677999887321111 1 0 13689999999998653
No 229
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=25.19 E-value=48 Score=29.34 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=24.4
Q ss_pred HHHHHHhCCcEEEEEeeCCcc-------ccccCCCEEEEccCcCc
Q psy5261 94 AMKRVSKQGGKFRRGTVSSFS-------GLESEFDFVFNCAGLGA 131 (267)
Q Consensus 94 L~~~~~~~G~~~~~~~V~~l~-------~~~~~ad~VV~aaG~~s 131 (267)
+.+.+++.|++++..++..+. ...+++|++|+|||...
T Consensus 102 ~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs~p 146 (458)
T 1lvl_A 102 VAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSS 146 (458)
T ss_dssp HHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEE
T ss_pred HHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCCCC
Confidence 345567789998763221111 12368999999999854
No 230
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=25.07 E-value=52 Score=29.29 Aligned_cols=39 Identities=13% Similarity=-0.057 Sum_probs=25.7
Q ss_pred HHHHHHHhCCcEEEEEeeCCcccc------------ccCCCEEEEccCcCc
Q psy5261 93 WAMKRVSKQGGKFRRGTVSSFSGL------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~~~V~~l~~~------------~~~ad~VV~aaG~~s 131 (267)
.+.+.+++.|++++..++..+... .+.+|.+|+|+|...
T Consensus 110 ~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p 160 (479)
T 2hqm_A 110 IYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKA 160 (479)
T ss_dssp HHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEE
T ss_pred HHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence 344556678999987544333211 257899999999753
No 231
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=25.00 E-value=63 Score=28.98 Aligned_cols=39 Identities=21% Similarity=0.099 Sum_probs=24.0
Q ss_pred HHHHHHHhCCcEEEEEeeCCc-------cc--------------cccCCCEEEEccCcCc
Q psy5261 93 WAMKRVSKQGGKFRRGTVSSF-------SG--------------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~~~V~~l-------~~--------------~~~~ad~VV~aaG~~s 131 (267)
.+.+.+++.|++++..++..+ .. ..+++|++|+|+|...
T Consensus 94 ~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p 153 (500)
T 1onf_A 94 IYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKP 153 (500)
T ss_dssp HHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCB
T ss_pred HHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCC
Confidence 344556778999987433221 11 1368999999999754
No 232
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=24.50 E-value=11 Score=33.84 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCcEEEE-EeeCCcccc----------ccCCCEEEEccCcC
Q psy5261 88 SDFLPWAMKRVSKQGGKFRR-GTVSSFSGL----------ESEFDFVFNCAGLG 130 (267)
Q Consensus 88 ~~~~~~L~~~~~~~G~~~~~-~~V~~l~~~----------~~~ad~VV~aaG~~ 130 (267)
..+..+|++.+.+.|++++. ++|++|... .+.||+||.+.-..
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P~~ 275 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMAVD 275 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSCHH
T ss_pred HHHHHHHHHHHHhcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCCHH
Confidence 56788888888889999987 688887543 25789999887654
No 233
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=24.28 E-value=51 Score=31.39 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCcEEEE-EeeCCcc
Q psy5261 92 PWAMKRVSKQGGKFRR-GTVSSFS 114 (267)
Q Consensus 92 ~~L~~~~~~~G~~~~~-~~V~~l~ 114 (267)
..+.+.++++|++|+. ++|+++.
T Consensus 575 ~~~~~~l~~~GV~i~~~~~v~~i~ 598 (729)
T 1o94_A 575 PNMMRRLHELHVEELGDHFCSRIE 598 (729)
T ss_dssp HHHHHHHHHTTCEEECSEEEEEEE
T ss_pred HHHHHHHHhCCCEEEcCcEEEEEE
Confidence 4566777889999987 5666553
No 234
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=24.15 E-value=44 Score=29.81 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=25.9
Q ss_pred HHHHHHHhCCcEEEEEe-eC----C--cc---c------------cccCCCEEEEccCcCch
Q psy5261 93 WAMKRVSKQGGKFRRGT-VS----S--FS---G------------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 93 ~L~~~~~~~G~~~~~~~-V~----~--l~---~------------~~~~ad~VV~aaG~~s~ 132 (267)
.+.+.+++.|++++... +. . +. . ..+++|.||+|+|.+..
T Consensus 100 ~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~ 161 (482)
T 1ojt_A 100 GLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT 161 (482)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred HHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence 35556677899988732 11 1 11 0 13679999999999854
No 235
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=24.01 E-value=73 Score=28.38 Aligned_cols=37 Identities=16% Similarity=-0.077 Sum_probs=23.7
Q ss_pred HHHHHHhCCcEEEEEeeCCccc------------cccCCCEEEEccCcC
Q psy5261 94 AMKRVSKQGGKFRRGTVSSFSG------------LESEFDFVFNCAGLG 130 (267)
Q Consensus 94 L~~~~~~~G~~~~~~~V~~l~~------------~~~~ad~VV~aaG~~ 130 (267)
+...+++.|++++...+..+.. ..+++|+||+|||..
T Consensus 121 ~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~ 169 (491)
T 3urh_A 121 VSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSD 169 (491)
T ss_dssp HHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEE
T ss_pred HHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCC
Confidence 3445667899998732221211 136899999999975
No 236
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=24.01 E-value=58 Score=28.84 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=23.9
Q ss_pred HHHHHhCCcEEEEEeeCCccc------------cccCCCEEEEccCcCc
Q psy5261 95 MKRVSKQGGKFRRGTVSSFSG------------LESEFDFVFNCAGLGA 131 (267)
Q Consensus 95 ~~~~~~~G~~~~~~~V~~l~~------------~~~~ad~VV~aaG~~s 131 (267)
...+++.|++++..++..+.. ..+.+|++|+|+|...
T Consensus 106 ~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p 154 (476)
T 3lad_A 106 ASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKP 154 (476)
T ss_dssp HHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEE
T ss_pred HHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCC
Confidence 345566799998743222211 1368999999999754
No 237
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=23.75 E-value=53 Score=30.84 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCcEEEE-EeeCCccc-----------cccCCCEEEEccCcCch
Q psy5261 92 PWAMKRVSKQGGKFRR-GTVSSFSG-----------LESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 92 ~~L~~~~~~~G~~~~~-~~V~~l~~-----------~~~~ad~VV~aaG~~s~ 132 (267)
..+.+.++++|++++. ++|++++. ..+.+|.||+|+|.-..
T Consensus 577 ~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~ 629 (671)
T 1ps9_A 577 WIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPN 629 (671)
T ss_dssp HHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEEC
T ss_pred HHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCcccc
Confidence 4456677889999987 46655432 13689999999997643
No 238
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=23.69 E-value=28 Score=31.39 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhhCCCC---CCCC-ceeeec------cccC--CC-------------C--CeEEEeC-----CCch
Q psy5261 190 ISRHDTASILERCYSLLPRL---EEAP-VLYEWC------GLRP--HR-------------S--LVIHNYG-----HGGY 237 (267)
Q Consensus 190 ~~~~~~~~l~~~~~~~~P~l---~~~~-~~~~w~------G~rp--~~-------------p--dl~~~~G-----~gg~ 237 (267)
.+++..+.+++.+.++||.- .... ....|. |... .. | +||++.- +.|
T Consensus 356 ~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~g- 434 (520)
T 1s3e_A 356 TKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSG- 434 (520)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTT-
T ss_pred CHHHHHHHHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCcE-
Confidence 44566778888898988742 1111 123342 1111 11 1 2777732 333
Q ss_pred hhhccHHHHHHHHHHHHhhhCC
Q psy5261 238 GVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 238 G~t~a~~~a~~la~li~~~l~~ 259 (267)
++--+..+|+..|+.|...+++
T Consensus 435 ~v~GAi~SG~~aA~~i~~~l~~ 456 (520)
T 1s3e_A 435 YMEGAVEAGERAAREILHAMGK 456 (520)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTS
T ss_pred EhHHHHHHHHHHHHHHHHHHhc
Confidence 5666777899999999888754
No 239
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=23.14 E-value=56 Score=28.64 Aligned_cols=42 Identities=10% Similarity=-0.023 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCcEEEE-EeeCCcccc-----------------ccCCCEEEEccCcCc
Q psy5261 90 FLPWAMKRVSKQGGKFRR-GTVSSFSGL-----------------ESEFDFVFNCAGLGA 131 (267)
Q Consensus 90 ~~~~L~~~~~~~G~~~~~-~~V~~l~~~-----------------~~~ad~VV~aaG~~s 131 (267)
....+.+.++++|++++. ++|++++.. .+.+|.||+|+|.-.
T Consensus 210 ~~~~~~~~l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~ 269 (437)
T 3sx6_A 210 SKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKG 269 (437)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEEC
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcC
Confidence 556677888899999987 566665421 257899999988543
No 240
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=23.03 E-value=37 Score=29.45 Aligned_cols=77 Identities=8% Similarity=-0.058 Sum_probs=42.4
Q ss_pred hHhhhCC--CcEECChhhhhcC--CCCceeEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCcccc----------
Q psy5261 51 SIENLVP--VYRDAQPDELVVG--NKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGL---------- 116 (267)
Q Consensus 51 ~~~~~g~--~~~~l~~~el~~~--P~~~~~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~---------- 116 (267)
.+++.|. ++.+++++.-... | .+... +..+...+..+.....+.+.+.|++++..+|+.+...
T Consensus 19 ~L~~~g~~~~V~lie~~~~~~y~~~-~l~~~--~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g~ 95 (404)
T 3fg2_P 19 SLRQAKYPGRIALINDEKHLPYQRP-PLSKA--YLKSGGDPNSLMFRPEKFFQDQAIELISDRMVSIDREGRKLLLASGT 95 (404)
T ss_dssp HHHHTTCCSCEEEECCSSSSSBCSG-GGGTG--GGGSCCCTTSSBSSCHHHHHHTTEEEECCCEEEEETTTTEEEESSSC
T ss_pred HHHhhCcCCCEEEEeCCCCCCCCCc-cCCHH--HHCCCCCHHHccCCCHHHHHhCCCEEEEEEEEEEECCCCEEEECCCC
Confidence 4566676 6778887763221 2 11000 1111222233323334455678999887666665432
Q ss_pred ccCCCEEEEccCcC
Q psy5261 117 ESEFDFVFNCAGLG 130 (267)
Q Consensus 117 ~~~ad~VV~aaG~~ 130 (267)
.+.+|++|+|+|..
T Consensus 96 ~~~~d~lvlAtG~~ 109 (404)
T 3fg2_P 96 AIEYGHLVLATGAR 109 (404)
T ss_dssp EEECSEEEECCCEE
T ss_pred EEECCEEEEeeCCC
Confidence 25799999999974
No 241
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=23.00 E-value=46 Score=29.36 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=23.6
Q ss_pred HHHHHhCCcEEEEEeeCCccc-------cccCCCEEEEccCcC
Q psy5261 95 MKRVSKQGGKFRRGTVSSFSG-------LESEFDFVFNCAGLG 130 (267)
Q Consensus 95 ~~~~~~~G~~~~~~~V~~l~~-------~~~~ad~VV~aaG~~ 130 (267)
...+++.|++++..++..+.. ..+++|++|+|+|..
T Consensus 100 ~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~ 142 (450)
T 1ges_A 100 ENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGR 142 (450)
T ss_dssp HHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEE
T ss_pred HHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCCC
Confidence 344567899998744322221 136799999999974
No 242
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=22.34 E-value=1.4e+02 Score=23.09 Aligned_cols=59 Identities=8% Similarity=-0.176 Sum_probs=40.3
Q ss_pred eEEEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccccCCCEEEEccCcCchhh
Q psy5261 76 YGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLESEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 76 ~g~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~~~ad~VV~aaG~~s~~l 134 (267)
..+.|...+.|..++...+++.+.+.|.++.-..+.+....-..+|.||+.+-.|...+
T Consensus 24 v~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~~~l~~~d~vi~g~~Ty~G~~ 82 (191)
T 1bvy_F 24 LLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHP 82 (191)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGSTTCCCSSSEEEEEECCBTTBC
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhhhhhhhCCeEEEEEeecCCCc
Confidence 34567778899999999999999888865433333332111136899999888875443
No 243
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=22.00 E-value=52 Score=29.39 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=22.6
Q ss_pred HHHHhCCcEEEEEeeCCccc------------cccCCCEEEEccCcC
Q psy5261 96 KRVSKQGGKFRRGTVSSFSG------------LESEFDFVFNCAGLG 130 (267)
Q Consensus 96 ~~~~~~G~~~~~~~V~~l~~------------~~~~ad~VV~aaG~~ 130 (267)
..+++.|++++..++..+.. ..+++|+||+|||..
T Consensus 112 ~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~ 158 (488)
T 3dgz_A 112 VQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGR 158 (488)
T ss_dssp HHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEE
T ss_pred HHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCC
Confidence 34566799988643322211 136899999999964
No 244
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=21.98 E-value=18 Score=32.77 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=26.9
Q ss_pred HHHHHHHHhCC-cEEEE-EeeCCcccc----------------------ccCCCEEEEccCcC-chhh
Q psy5261 92 PWAMKRVSKQG-GKFRR-GTVSSFSGL----------------------ESEFDFVFNCAGLG-AQAL 134 (267)
Q Consensus 92 ~~L~~~~~~~G-~~~~~-~~V~~l~~~----------------------~~~ad~VV~aaG~~-s~~l 134 (267)
.+++..++++| ++|+. ++|++|... .++|+.||+|+|++ ++.|
T Consensus 230 ~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~l 297 (507)
T 1coy_A 230 KTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKL 297 (507)
T ss_dssp TTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHH
Confidence 34555566665 88876 566555210 13478899999998 5444
No 245
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=21.80 E-value=1.1e+02 Score=23.13 Aligned_cols=52 Identities=12% Similarity=-0.065 Sum_probs=34.6
Q ss_pred eeeehHHHHHHHHHHHHhCCcEEEEEeeCCcc-------------------ccc-cCCCEEEEccCcCchhh
Q psy5261 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFS-------------------GLE-SEFDFVFNCAGLGAQAL 134 (267)
Q Consensus 83 ~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~-------------------~~~-~~ad~VV~aaG~~s~~l 134 (267)
...|..+++.++++.+++.|+++....+.+.. ... ..||.||+++-.|...+
T Consensus 15 ~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~ 86 (200)
T 2a5l_A 15 RHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNM 86 (200)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTBC
T ss_pred CCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCc
Confidence 35678899999999998889776543333210 011 36888888888776544
No 246
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=20.90 E-value=70 Score=24.49 Aligned_cols=31 Identities=16% Similarity=-0.042 Sum_probs=25.6
Q ss_pred eEEEeC--CCchhhhccHHHHHHHHHHHHhhhCC
Q psy5261 228 VIHNYG--HGGYGVTTAPGTSRYAVQLVKQALDP 259 (267)
Q Consensus 228 l~~~~G--~gg~G~t~a~~~a~~la~li~~~l~~ 259 (267)
||++ | ++|.|+..|...|+.+|+.|.+.|..
T Consensus 297 v~l~-GDa~~g~gv~~A~~sG~~aA~~I~~~L~~ 329 (336)
T 3kkj_A 297 IYVC-GDWCLSGRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp EEEC-CGGGTTSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEE-ecccCCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 6665 5 55778999999999999999998863
No 247
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=20.76 E-value=54 Score=26.90 Aligned_cols=80 Identities=11% Similarity=-0.073 Sum_probs=45.3
Q ss_pred hHhhhCCCcEECChhhhhcCCCCceeEE--Eeee-eeeehHHHHHHHHHHHHhCCcEEEEE-eeCCccc----------c
Q psy5261 51 SIENLVPVYRDAQPDELVVGNKTYKYGS--YSET-LVIENSDFLPWAMKRVSKQGGKFRRG-TVSSFSG----------L 116 (267)
Q Consensus 51 ~~~~~g~~~~~l~~~el~~~P~~~~~g~--~~~~-~~vdp~~~~~~L~~~~~~~G~~~~~~-~V~~l~~----------~ 116 (267)
.+++.|.++-++++...-.. -...+. .++. ..+.+..+.........+.+..+... .+..... .
T Consensus 24 ~l~~~g~~V~liE~~~~gG~--~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (312)
T 4gcm_A 24 YASRANLKTVMIERGIPGGQ--MANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNK 101 (312)
T ss_dssp HHHHTTCCEEEEESSCTTGG--GGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEEEECSSCEEEECSSC
T ss_pred HHHHCCCCEEEEecCCCCCe--eecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeeeeeeecceeeccCCe
Confidence 35677888888865432110 000110 1222 44566777777777777888777652 2221111 1
Q ss_pred ccCCCEEEEccCcCch
Q psy5261 117 ESEFDFVFNCAGLGAQ 132 (267)
Q Consensus 117 ~~~ad~VV~aaG~~s~ 132 (267)
.+++|++|+|||....
T Consensus 102 ~~~~d~liiAtGs~~~ 117 (312)
T 4gcm_A 102 ELTAKAVIIATGAEYK 117 (312)
T ss_dssp EEEEEEEEECCCEEEC
T ss_pred EEEeceeEEcccCccC
Confidence 3679999999997543
No 248
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=20.46 E-value=1.4e+02 Score=21.49 Aligned_cols=56 Identities=5% Similarity=-0.105 Sum_probs=38.7
Q ss_pred EEeeeeeeehHHHHHHHHHHHHhCCcEEEEEeeCCccccccCCCEEEEccCcC-chhh
Q psy5261 78 SYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLESEFDFVFNCAGLG-AQAL 134 (267)
Q Consensus 78 ~~~~~~~vdp~~~~~~L~~~~~~~G~~~~~~~V~~l~~~~~~ad~VV~aaG~~-s~~l 134 (267)
+.|.+.+.|..++...+++.+.+.|+++.......... -..+|.||+.+..| ...+
T Consensus 6 I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~-l~~~d~vi~g~pt~g~g~~ 62 (147)
T 2hna_A 6 LISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLED-LPASGIWLVISSTHGAGDI 62 (147)
T ss_dssp EECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCTTSCS-SCSEEEEEEECCTTTTCCT
T ss_pred EEEECCchHHHHHHHHHHHHHHHCCCceEEecCCCHHH-cccCCeEEEEECccCCCCC
Confidence 45556778999999999999988888765422222111 13689999999888 4443
No 249
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=20.29 E-value=33 Score=30.50 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCcEEEEEeeCCcccc----------c--cCCCEEEEccCcC
Q psy5261 92 PWAMKRVSKQGGKFRRGTVSSFSGL----------E--SEFDFVFNCAGLG 130 (267)
Q Consensus 92 ~~L~~~~~~~G~~~~~~~V~~l~~~----------~--~~ad~VV~aaG~~ 130 (267)
..+...+++.|++++..++..+... . +.+|++|+|+|..
T Consensus 93 ~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~ 143 (466)
T 3l8k_A 93 QHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAE 143 (466)
T ss_dssp HHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEE
T ss_pred chHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCC
Confidence 3444455667999876555443221 3 6799999999973
Done!