RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5261
(267 letters)
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 179 bits (456), Expect = 7e-55
Identities = 83/247 (33%), Positives = 121/247 (48%), Gaps = 29/247 (11%)
Query: 48 KNASIENLVPVYRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRR 107
+ S ++ V +R P EL + Y YG + +L++E ++L W +R++++G KF +
Sbjct: 103 PDPSWKDTVLGFRKLTPRELDMFPD-YGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQ 161
Query: 108 GTVSSFSGLESE-FDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAPWLSHFYYL----- 161
V SF + E D + NC G+ A AL RD L P RGQ++KV APW+ HF
Sbjct: 162 RKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPER 221
Query: 162 --DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWC 219
Y+IP + VTLGG ++S + D +I E C L P L+ A ++ E
Sbjct: 222 GIYNSPYIIPGTQT-VTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERT 280
Query: 220 GLRPHRSL----------------VIHNYGHGGYGVTTAPGTSRYAVQLVKQALD--PTS 261
G RP R VIHNYGHGGYG+T G + A +L + L+ S
Sbjct: 281 GFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLS 340
Query: 262 SL-KSKL 267
+ S L
Sbjct: 341 RMPPSHL 347
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 165 bits (418), Expect = 3e-49
Identities = 59/253 (23%), Positives = 86/253 (33%), Gaps = 51/253 (20%)
Query: 53 ENLVPVYRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSS 112
+++ P YR E G G +TL + + + + + K G F R TV+S
Sbjct: 111 KDITPNYRPLPSSECPPG----AIGVTYDTLSVHAPKYCQYLARELQKLGATFERRTVTS 166
Query: 113 FSGLESEFDFVFNCAGLGAQALC--RDRKLTPIRGQVIKVWAPWLSHFYYLD---YDVYV 167
D V N GLGA+++ D+ PIRGQ + V +P Y+
Sbjct: 167 LEQAFDGADLVVNATGLGAKSIAGIDDQAAEPIRGQTVLVKSPCKRCTMDSSDPASPAYI 226
Query: 168 IPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPR------LEEAPVLYEWCGL 221
IP G V GG + ++ IL+ C L P +E VL GL
Sbjct: 227 IPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNVGL 286
Query: 222 RPHR------------------------------------SLVIHNYGHGGYGVTTAPGT 245
RP R ++H YG G + G
Sbjct: 287 RPARRGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGA 346
Query: 246 SRYAVQLVKQALD 258
+ QLV +A
Sbjct: 347 AEDVAQLVDEAFQ 359
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 78.8 bits (195), Expect = 4e-17
Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 20/152 (13%)
Query: 121 DFVFNCAGLGAQALCR----DRKLTPIRGQVIKVWAP--WLSHFYYLDYDVYVIPHSNGA 174
+ V +G+ + + + P++G+ + VW L+ Y D Y++P +G
Sbjct: 209 NHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHD-HCYIVPRKSGR 267
Query: 175 VTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRP----------- 223
+ +G +S S++++ ++LP ++ V W GLRP
Sbjct: 268 LVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGR 327
Query: 224 HRSL--VIHNYGHGGYGVTTAPGTSRYAVQLV 253
H ++ GH G+ AP T L+
Sbjct: 328 HPEDSRILFAAGHFRNGILLAPATGALISDLI 359
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; structural genomics, PSI-biology; HET:
FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Length = 689
Score = 43.7 bits (102), Expect = 3e-05
Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 11/120 (9%)
Query: 115 GLESEFDFVFNCAGLGAQALCRDRKL--TPIRGQVIKVWAP----WLSHFYYLDYDVYVI 168
V G + L + +RGQV + L D + +
Sbjct: 453 QAAKHHATVILATGHRLPEWEQTHHLPLSAVRGQVSHIPTTPVLSQLQQVLCYDGYLTPV 512
Query: 169 PHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE-----EAPVLYEWCGLRP 223
+N +G + D + ER LP++ + CG+R
Sbjct: 513 NPANQHHCIGASYQRGDIATDFRLTEQQENRERLLRCLPQVSWPQQVDVSDNQARCGVRC 572
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 7e-05
Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 78/218 (35%)
Query: 53 ENLVPVYRDA---------QPDEL--VVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQ 101
++++ V+ DA D ++ + + + + L W + ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 102 GGKFRRGTVSSF--SGLESEFDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAPWLSHFY 159
V F L + F+ + + R +
Sbjct: 78 -------MVQKFVEEVLRINYKFLMS----PIKTEQRQPSM------------------- 107
Query: 160 YLDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWC 219
+Y+ + + Y+ +SR +L +A L E
Sbjct: 108 --MTRMYIEQRDR---LYNDNQVFAKYN--VSRLQ----------PYLKLRQA--LLE-- 146
Query: 220 GLRPHRSLVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL 257
LRP ++++I G G G T +
Sbjct: 147 -LRPAKNVLID--GVLGSGKTW----------VALDVC 171
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 40.3 bits (95), Expect = 4e-04
Identities = 29/162 (17%), Positives = 45/162 (27%), Gaps = 34/162 (20%)
Query: 121 DFVFNCAG-----LGAQALCRDRKLTPIRGQVIKV-WAPWLSHFYY-----LDYDVYVIP 169
+ N AG + A R L P R P + + LD Y+ P
Sbjct: 199 AVLVNAAGAWCDAIAGLAGVRPLGLQPKRRSAFIFAPPPGIDCHDWPMLVSLDESFYLKP 258
Query: 170 HSNGAVTLGGCRH-----YDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLR-- 222
+ G + +D + ++E L + W GLR
Sbjct: 259 DA-GMLLGSPANADPVEAHDVQPEQLDIATGMYLIEE----ATTLTIRRPEHTWAGLRSF 313
Query: 223 -PHRSLVI----------HNYGHGGYGVTTAPGTSRYAVQLV 253
LV GGYG+ T+ + L+
Sbjct: 314 VADGDLVAGYAANAEGFFWVAAQGGYGIQTSAAMGEASAALI 355
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 39.6 bits (93), Expect = 7e-04
Identities = 26/190 (13%), Positives = 40/190 (21%), Gaps = 40/190 (21%)
Query: 96 KRVSKQGGKFR----RGTVSSFSGLESEFDFVFNCAGLGAQALCRDRKLTPIRGQV---- 147
+ G + CAG + L + + P+R
Sbjct: 173 TAIRHDDDGVTIETADGEYQA--------KKAIVCAGTWVKDLLPELPVQPVRKVFAWYQ 224
Query: 148 ----IKVWAPWLSHFYYLDYD--VYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILER 201
V + + L Y P N A+ +G R A ++
Sbjct: 225 ADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVVSD 284
Query: 202 CYSLLPRLEE-----APVLYEWCGLR-------------PHRSLVIHNYGHGGYGVTTAP 243
P L LY P + G G+G A
Sbjct: 285 GSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITGLSGHGFKFAS 344
Query: 244 GTSRYAVQLV 253
A
Sbjct: 345 VLGEIAADFA 354
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 38.2 bits (89), Expect = 0.002
Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 51/233 (21%)
Query: 77 GSYSETLVIENSDFLPWAMKRVSKQGGKFRRGT---------------VSSFSGLESEF- 120
++ T + +F ++QG + +G + E
Sbjct: 95 NGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIE 154
Query: 121 -DFVFNCAG--------LGAQALCRDRKLTPIRGQVIKVWAP---------WLSHFYYLD 162
F+ + +G G + + V P + +
Sbjct: 155 ARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPK 214
Query: 163 YDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTA--SILERCYSLLPRLEEAPVLYEWCG 220
++VIP SNG ++G + + +++ + R + L+E
Sbjct: 215 VWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERFKSEEFLFEPRT 274
Query: 221 LRPHRSLVIHNYGHG---------------GYGVTTAPGTSRYAVQLVKQALD 258
+ + YG G G T A + +L Q L
Sbjct: 275 IEGYAISASKLYGDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLK 327
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; rossmann fold, oxidase, methyl
transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli}
PDB: 3awi_A*
Length = 676
Score = 37.6 bits (86), Expect = 0.003
Identities = 25/182 (13%), Positives = 42/182 (23%), Gaps = 47/182 (25%)
Query: 109 TVSSFSGLESEFDFVFNCAGLGAQAL--CRDRKLTPIRGQVIKV----WAPWLSHFYYLD 162
++ ++ V G + + GQV + L D
Sbjct: 451 LLNFAGDQQATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYD 510
Query: 163 YDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEA-----PVLYE 217
+ +N +G H S S D +R P+ + A
Sbjct: 511 GYLTPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEA 570
Query: 218 WCGLR-------------PHRSLVIHNY-----------------------GHGGYGVTT 241
CG+R P + Y G G+ +
Sbjct: 571 RCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCS 630
Query: 242 AP 243
AP
Sbjct: 631 AP 632
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 37.2 bits (87), Expect = 0.004
Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 38/195 (19%)
Query: 84 VIENSDFLPWAMKRVSKQGGKFR-----RGTVSSFSGLESEFDFVFNCAGLGAQALCR-- 136
+I+N + K G K RGT+ + V + L
Sbjct: 191 IIQN-----CEVTGFIKDGEKVTGVKTTRGTIHA--------GKVALAGAGHSSVLAEMA 237
Query: 137 --DRKLTPIRGQVIKVWA-PWLSHFYYLDYDV--YVIPHSNGAVTLGG-CRHYDSYSRDI 190
+ + Q + + + + YV G + +G Y+ Y +
Sbjct: 238 GFELPIQSHPLQALVSELFEPVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRG 297
Query: 191 SRHDTASILERCYSLLPRLEEAPVLYEWCGLR---PHRSLVI---------HNYGHGGYG 238
+ H + L P A VL W G+ S +I N G G G
Sbjct: 298 AFHVIQEQMAAAVELFPIFARAHVLRTWGGIVDTTMDASPIISKTPIQNLYVNCGWGTGG 357
Query: 239 VTTAPGTSRYAVQLV 253
PG +
Sbjct: 358 FKGTPGAGFTLAHTI 372
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 36.7 bits (85), Expect = 0.007
Identities = 31/210 (14%), Positives = 56/210 (26%), Gaps = 42/210 (20%)
Query: 85 IENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLE-SEFDFVFNCAGLGAQALCR----DRK 139
+E + ++ + R G + + AG+ + L D
Sbjct: 207 VELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVGEKLVVAAGVWSNRLLNPLGIDTF 266
Query: 140 LTPIRGQVIKVWAP----------------WLSHFYYLDYDVYVIP-HSNGAVTLGGCRH 182
P + V +V A L V V P G+ + +
Sbjct: 267 SRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILPKRVLVRPAPREGSFWVQLSDN 326
Query: 183 -------YDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGL------------RP 223
+ + + A IL LP+ ++A W G P
Sbjct: 327 LGRPFALEEDPQPEEHYYSLA-ILPILSLYLPQFQDAYPSGGWAGHYDISFDANPVVFEP 385
Query: 224 HRSLVIHNYGHGGYGVTTAPGTSRYAVQLV 253
S ++ G G G+ + R A +
Sbjct: 386 WESGIVVAAGTSGSGIMKSDSIGRVAAAVA 415
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.008
Identities = 45/288 (15%), Positives = 94/288 (32%), Gaps = 83/288 (28%)
Query: 7 SVDASVQNEDGS---RTLTLSQTKFSADGSTGKAMISTYQTSLLKNASIENLVPVYRDA- 62
++ A + E+ + +T L + +A + ++L + N + A
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN-AQLV--AI 159
Query: 63 ---QP------DELVVGNKTYK-YGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSS 112
Q +EL Y+ Y L+ +++ L ++ F +G ++
Sbjct: 160 FGGQGNTDDYFEELR---DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LNI 215
Query: 113 FSGLES-----EFDFVFNCA------GLGAQ-----ALCRDRKLTPIRGQVIKVWAPWLS 156
LE+ + D++ + G+ Q + TP G++ +L
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGV-IQLAHYVVTAKLLGFTP--GEL----RSYLK 268
Query: 157 HFYYLDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLY 216
HS G VT + I+ D+ S + +A +
Sbjct: 269 G---------ATGHSQGLVT----------AVAIAETDSWE------SFFVSVRKAITVL 303
Query: 217 EWCGLR-----PHRSL---VIHNYGHGGYGVTTAP-----GTSRYAVQ 251
+ G+R P+ SL ++ + GV + P ++ VQ
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQ 350
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 34.5 bits (79), Expect = 0.028
Identities = 26/224 (11%), Positives = 47/224 (20%), Gaps = 55/224 (24%)
Query: 91 LPWAMKRVSKQGGKFRRGTVSSF-----------------SGLESEFDFVFNCAGLGAQA 133
L A + + G KF GT G + F CAG A
Sbjct: 164 LVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQ 223
Query: 134 LCRDRKLTPIRGQVIKVWAPW---------LSHFYYLDYDVYVIPHSNGAVTLGGCRHY- 183
+ + A + + ++ + P H
Sbjct: 224 FLDFKNQLRPTAWTLVHIALKPEERALYKNIPVIFNIERGFFFEPDEERGEIKICDEHPG 283
Query: 184 ---------------DSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLR------ 222
I + + +P+L + P +
Sbjct: 284 YTNMVQSADGTMMSIPFEKTQIPKEAETRVRALLKETMPQLADRPFSFARICWCADTANR 343
Query: 223 -------PHRSLVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP 259
P ++ G G G P V ++ +
Sbjct: 344 EFLIDRHPQYHSLVLGCGASGRGFKYLPSIGNLIVDAMEGKVPQ 387
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 34.1 bits (78), Expect = 0.047
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 1 MGFPVISVDASVQNEDGSRTLTLSQTKFSADGSTGK 36
G P +S + E ++ ++Q + K
Sbjct: 454 SGTPHVSFKYNYDAEKKQYSIHVNQYTKPDENQKEK 489
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 32.5 bits (75), Expect = 0.12
Identities = 26/186 (13%), Positives = 51/186 (27%), Gaps = 38/186 (20%)
Query: 98 VSKQGGKFR-----RGTVSSFSGLESEFDFVFNCAG-----LGAQA-LCRDRKLTPIRGQ 146
+ + + +G + + V N + A A + + P + Q
Sbjct: 175 FLIENNEIKGVKTNKGIIKT--------GIVVNATNAWANLINAMAGIKTKIPIEPYKHQ 226
Query: 147 V-----IKVWAPWLSHFYYLDYDVYVIPHSNGAVTLGGCR-HYDSYSRDISRHDTASILE 200
IK + Y+ +G + G +Y + +
Sbjct: 227 AVITQPIKRGTINPMVISFKYGHAYLTQTFHGGIIGGIGYEIGPTYDLTPTYEFLREVSY 286
Query: 201 RCYSLLPRLEEAPVLYEWCGLR---PHRSLVI----------HNYGHGGYGVTTAPGTSR 247
++P L+ +L W G P + I G G+G AP
Sbjct: 287 YFTKIIPALKNLLILRTWAGYYAKTPDSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGE 346
Query: 248 YAVQLV 253
+L+
Sbjct: 347 MVAELI 352
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 32.6 bits (74), Expect = 0.14
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 1 MGFPVISVDASVQNEDGSRTLTLSQTKFSADGSTGK 36
G P+++V E TLT+SQ + K
Sbjct: 464 SGTPIVTVKDDYNPETEQYTLTISQRTPATPDQAEK 499
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 32.2 bits (72), Expect = 0.17
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Query: 91 LPWAMKRVSKQGGKFRRG--TVSSFSGLESEFDFVFNCAGLG--AQALCRDRKLTPIRGQ 146
P M+ + +GGKF + GL ++D + C G + + + +P
Sbjct: 125 QPMLMRALEARGGKFCYDAVSAEDLEGLSEQYDLLVVCTGKYALGKVFEKQSENSPFEKP 184
Query: 147 VIKVWAPWLSHFYYLDYD--VYVIPHSNGAVTLGGCRHYD 184
+ +G + ++
Sbjct: 185 QRALCVGLFKGIKEAPIRAVTMSFSPGHGELIEIPTLSFN 224
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 31.7 bits (72), Expect = 0.21
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 2 GFPVISVDASVQNEDGSRTLTLSQTKFSADGSTG 35
GFP+I++ G R + + Q +
Sbjct: 1 GFPLITI-----TVRG-RNVHMKQEHYMKGSDGA 28
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase;
HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1
PDB: 1j0b_A*
Length = 325
Score = 31.5 bits (71), Expect = 0.27
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 161 LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEE-APVLYEWC 219
+ +D V+ +G TL G S + R ++ + +L+ E
Sbjct: 180 VKFDSIVVAAGSGG-TLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELL 238
Query: 220 GLRPHRSLVIHNYGHGGYGVTTAPGTSRYAVQLVKQA----LDPTSSLKS 265
G++ +++Y G YG T ++ V LDP + K+
Sbjct: 239 GVKVEVRPELYDYSFGEYGKITGEVAQ--IIRKVGTREGIILDPVYTGKA 286
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 30.9 bits (70), Expect = 0.46
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 1 MGFPVISVDASVQNEDGSRTLTLSQTKFSADGSTGKAMISTYQTSLL 47
G P++ V +DG +L L Q +F Q L
Sbjct: 545 KGIPLLVV-----KQDGC-SLRLQQERFLQGVFQEDPEWRALQERYL 585
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 30.9 bits (70), Expect = 0.47
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 1 MGFPVISVDASVQNEDGSRTLTLSQTKFSADGSTG 35
GFP+I++ R + + Q +
Sbjct: 483 KGFPLITITVR------GRNVHMKQEHYMKGSDGA 511
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 30.8 bits (70), Expect = 0.48
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 1 MGFPVISVDASVQNEDGSRTLTLSQTKFSADGS 33
G+PVI + + R +T+ QT+F +G
Sbjct: 414 PGYPVIKL------KRNGRKITMYQTRFLLNGE 440
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 28.6 bits (64), Expect = 0.53
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 86 ENSDFLPWAMKRVSKQGGKFR-RGTVSSFSGLESEFDFVFNCAGLGAQALCRDRKL 140
N F PW M G + R R T + + LE E +F N L R R++
Sbjct: 3 SNHTFYPW-MAIAGTNGLRRRGRQTYTRYQTLELEKEFHTN------HYLTRRRRI 51
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 30.2 bits (69), Expect = 0.63
Identities = 7/41 (17%), Positives = 10/41 (24%)
Query: 96 KRVSKQGGKFRRGTVSSFSGLESEFDFVFNCAGLGAQALCR 136
+ + + N AGL A L R
Sbjct: 174 IAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLAR 214
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 29.9 bits (67), Expect = 0.85
Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 54/236 (22%)
Query: 77 GSYSETLVIENSDFLPWAMKRVSKQGGKFRRGT----------------VSSFSGLESEF 120
Y +E + F ++ ++G R + G+E
Sbjct: 100 DPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMA 159
Query: 121 --DFVFNCAG--------LGAQALCRDRKLTPIRGQVIKV------WAPWLSHFYYLDYD 164
F+ + +G +G + R + + G + + D
Sbjct: 160 HARFIVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQGNILSAAFQDGW 219
Query: 165 VYVIPHSNGAVTLGGCRHYDSYSRDISRHDTA--SILERCYSLLPRLEEAPVLYEWC--- 219
+ IP S+ ++G ++ H+ A ++RC + L A +
Sbjct: 220 FWYIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGE 279
Query: 220 --GLRPHRSLVIHNYGHG---------------GYGVTTAPGTSRYAVQLVKQALD 258
+ + + +G GV A ++ + + L
Sbjct: 280 IRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLA 335
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 29.5 bits (66), Expect = 1.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 1 MGFPVISVDASVQNEDGSRTLTLSQTKFSADGSTGK 36
G PV+ + + ++ LT+ QT T K
Sbjct: 439 AGTPVLEAEGRL--KNNIFELTVKQTVPPTPDMTDK 472
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 28.9 bits (65), Expect = 1.8
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 163 YDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE 210
Y+ Y +PH+ + L G RD++ + + ER YS + E
Sbjct: 166 YEGYALPHAIMRLDLAG--------RDLTDYLMKILTERGYSFVTTAE 205
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 28.7 bits (64), Expect = 2.2
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 228 VIHNYGHGGYGVTTAPGTSRYAVQLVKQA----LDPTSSLKS 265
+ + YG+ A++L + DP KS
Sbjct: 259 LDERFAGPEYGLPNEGTLE--AIRLCARTEGMLTDPVYEGKS 298
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 27.8 bits (62), Expect = 4.0
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 1 MGFPVISVDASVQNEDGSRTLTLSQTKFSADGSTGKA 37
G P I + + + + LSQ +A +
Sbjct: 457 PGLPPIKPNYDMTLTN--ACIALSQRWITAKEDDLNS 491
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.3
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 19 RTLTLSQTKFSADGSTGKAMISTYQTSLLKNASIE 53
+ L + K AD S +L A++E
Sbjct: 23 KKLQ-ASLKLYADDSA---------PALAIKATME 47
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 27.0 bits (60), Expect = 7.4
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 163 YDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLE 210
+ YVI + + G RDI+ + +R + P
Sbjct: 181 AEGYVIGSCIKHIPIAG--------RDITYFIQQLLRDREVGIPPEQS 220
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2,
structura genomics, PSI, protein structure initiative;
3.00A {Pseudomonas aeruginosa}
Length = 428
Score = 26.9 bits (60), Expect = 7.8
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 87 NSDFLPWAMKRVSKQGGKFRRGTVSSF 113
+ FL ++R+ +G F R S
Sbjct: 275 DGPFLEQVLRRLLPEGDAFSRAIQRSL 301
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP:
d.3.1.1 PDB: 1y4h_A
Length = 183
Score = 26.4 bits (57), Expect = 8.1
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 141 TPIRGQVIKVWAPWLSHFYYLDYDVYVIPHSNG 173
+ + W PW + D D ++ S
Sbjct: 139 KINDQEKLIYWNPWDTELSIQDADSSLLHLSFN 171
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 26.3 bits (59), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 185 SYSRDISRHDTASILERCYSLLPRLEE 211
+Y+R + LE +SL PRL+E
Sbjct: 106 AYNRK-DKEGIKRDLEWIFSLFPRLKE 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.408
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,051,170
Number of extensions: 238652
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 41
Length of query: 267
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 175
Effective length of database: 4,133,061
Effective search space: 723285675
Effective search space used: 723285675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)