RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5261
(267 letters)
>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula
gracilis [TaxId: 5286]}
Length = 95
Score = 80.2 bits (197), Expect = 5e-20
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 142 PIRGQVIKVWAPWLSHFYYL---DYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASI 198
PIRGQ + V +P Y+IP G V GG + ++ I
Sbjct: 3 PIRGQTVLVKSPCKRCTMDSSDPASPAYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRI 62
Query: 199 LERCYSLLPRL------EEAPVLYEWCGLRPHR 225
L+ C L P + E VL GLRP R
Sbjct: 63 LKHCLRLDPTISSDGTIEGIEVLRHNVGLRPAR 95
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp.
[TaxId: 1409]}
Length = 88
Score = 78.1 bits (192), Expect = 2e-19
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 140 LTPIRGQVIKVWAP--WLSHFYYLDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTAS 197
P++G+ + VW L+ Y D Y++P +G + +G +S S
Sbjct: 1 FLPVKGECLSVWNDDIPLTKTLYHD-HCYIVPRKSGRLVVGATMKPGDWSETPDLGGLES 59
Query: 198 ILERCYSLLPRLEEAPVLYEWCGLRP 223
++++ ++LP ++ V W GLRP
Sbjct: 60 VMKKAKTMLPAIQNMKVDRFWAGLRP 85
>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 93
Score = 76.7 bits (188), Expect = 9e-19
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 140 LTPIRGQVIKVWAPWLSHFYY-------LDYDVYVIPHSNGAVTLGGCRHYDSYSRDISR 192
L P RGQ+IKV APWL +F + Y+IP VTLGG +++ +
Sbjct: 1 LQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQA-VTLGGTFQVGNWNEINNI 59
Query: 193 HDTASILERCYSLLPRLEEAPVLYEWCGLRPHR 225
D +I E C L P L++A ++ E+ G RP R
Sbjct: 60 QDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVR 92
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 72.4 bits (176), Expect = 1e-15
Identities = 32/187 (17%), Positives = 53/187 (28%), Gaps = 52/187 (27%)
Query: 74 YKYGSYSETLVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLESEFDFVFNCAGLGAQA 133
G +TL + + + + + K G F R TV+S D V N GLGA++
Sbjct: 128 GAIGVTYDTLSVHAPKYCQYLARELQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKS 187
Query: 134 L--CRDRKLTPIRGQVIKVWAPWLSHFYYLDYDVYVIPHSNGAVTLGGCRHYDSYSRDIS 191
+ D+ R + ++ P L + G R
Sbjct: 188 IAGIDDQARGGPRVEAERIVLPLDRTKSPLS------------LGRGSARA--------- 226
Query: 192 RHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVIHNYGHGGYGVTTAPGTSRYAVQ 251
+ ++H YG G + G + Q
Sbjct: 227 -----------------------------AKEKEVTLVHAYGFSSAGYQQSWGAAEDVAQ 257
Query: 252 LVKQALD 258
LV +A
Sbjct: 258 LVDEAFQ 264
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 63.3 bits (153), Expect = 2e-12
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 42 YQTSLLKNASIENLVPVYRDAQPDELVVGNKTYKYGSYSETLVIENSDFLPWAMKRVSKQ 101
+ + +++V +R P EL + Y+YG ++ +L++E +L W +R++++
Sbjct: 97 LFREAVPDPYWKDMVLGFRKLTPRELDMFPD-YRYGWFNTSLILEGRKYLQWLTERLTER 155
Query: 102 GGKFRRGTVSSFSGL-ESEFDFVFNCAGLGAQALCRDRKLTPIRGQVIKVWAPWLS--HF 158
G KF V SF + D + NC G+ A L D + + ++ + H
Sbjct: 156 GVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLQVRLEREQLRFGSSNTEVIHN 215
Query: 159 YYLDYDVYVIPHSNGAVTLG-GC 180
Y H +T+ GC
Sbjct: 216 Y---------GHGGYGLTIHWGC 229
Score = 56.4 bits (135), Expect = 4e-10
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 201 RCYSLLPRLEEAPVLYEWCGLRPHRSLVIHNYGHGGYGVTTAPGTSRYAVQLVKQALD 258
L P + + E + VIHNYGHGGYG+T G + +L + L+
Sbjct: 185 WAGVLQPDPLQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLE 242
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId:
1280]}
Length = 183
Score = 28.7 bits (64), Expect = 0.43
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 145 GQVIKVWAPWLSHFYYLDYDVYVIPHSNGAVTLGGCRHYDSYS 187
+ + W PW + D D ++ S R Y+ Y
Sbjct: 143 QEKLIYWNPWDTELSIQDADSSLLHLSFN-------RDYNWYG 178
>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId:
1280]}
Length = 173
Score = 28.8 bits (64), Expect = 0.44
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 146 QVIKVWAPWLSHFYYLDYDVYVIPHSNGAVTLGGCRHYDSYS 187
+VI +W PW + F D VIP SNG HY YS
Sbjct: 134 EVIIIWNPWDNGFMTQDAKNNVIPVSNG-------DHYQWYS 168
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus
sp. [TaxId: 1409]}
Length = 276
Score = 29.0 bits (63), Expect = 0.51
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 218 WCGLRPHRSLVIHNYGHGGYGVTTAPGTSRYAVQLV 253
+ G P S ++ GH G+ AP T L+
Sbjct: 223 YIGRHPEDSRILFAAGHFRNGILLAPATGALISDLI 258
>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4,
RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 25.9 bits (57), Expect = 2.8
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 144 RGQVIKVWAPWL-----SHFYYLDYDVYVIPHSNGAVTLG 178
+G +++V +P L +HF+ L VI +NG + +
Sbjct: 1 QGVLVQV-SPSLVKRQKTHFHDLPCGASVILGNNGFIWIY 39
>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 111
Score = 25.4 bits (55), Expect = 4.7
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 155 LSHFYYLDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRL 209
L+ + I H +G ++S I+ + S+ + L +L
Sbjct: 50 LTLRKGGNNKSIKIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKL 104
>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
9606]}
Length = 242
Score = 25.6 bits (55), Expect = 6.1
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 11/123 (8%)
Query: 83 LVIENSDFLPWAMKRVSKQGGKFRRGTVSSFSGLESEFDFVFNCAGLGAQALCRDRKLTP 142
L+I N +F K + R GT L + F+ L + T
Sbjct: 15 LIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE------ELHFEIKPH-DDCTV 67
Query: 143 IRGQVIKVWAPWLSHFYYLDYDVYVIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERC 202
+ I + H + ++ H + + G D I + +C
Sbjct: 68 EQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYG----TDGQEAPIYELTSQFTGLKC 123
Query: 203 YSL 205
SL
Sbjct: 124 PSL 126
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 24.8 bits (54), Expect = 7.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 75 KYGSYSETLVIENSDFLPWAMKRVSKQGGKFR 106
KYG + E+ PW ++ K G KF+
Sbjct: 79 KYGIVLKEFRPED---QPWLLRVNGKSGRKFK 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.408
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 987,437
Number of extensions: 45541
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 14
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)