BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5266
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 55/83 (66%)
Query: 48 SAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
+AQSDFI V C+LT TE L + F MK TA+ IN SRG +++Q+ L + L KI
Sbjct: 208 AAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAA 267
Query: 108 AGLDVMIPEPLPADHPLVQLDNC 130
AGLDV PEPLP +HPL+ L NC
Sbjct: 268 AGLDVTSPEPLPTNHPLLTLKNC 290
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 54/83 (65%)
Query: 48 SAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
+AQSDFI V C+LT TE L + F K TA+ IN SRG +++Q+ L + L KI
Sbjct: 206 AAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAA 265
Query: 108 AGLDVMIPEPLPADHPLVQLDNC 130
AGLDV PEPLP +HPL+ L NC
Sbjct: 266 AGLDVTSPEPLPTNHPLLTLKNC 288
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SD + + L + T LI ++ LMK TAILINTSRG ++D ALV+ L++ I GAG
Sbjct: 196 ESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAG 255
Query: 110 LDVMIPEPLPADHPLVQLDNC 130
LDV EPLP DHPL + DN
Sbjct: 256 LDVFEEEPLPKDHPLTKFDNV 276
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVE 98
Y L + ++D + + LT +T +L+ R++ MK AIL+NT+RG L+D EALVE
Sbjct: 182 YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVE 241
Query: 99 FLRDKKIGGAGLDVMIPEPLPADHPLVQLDNC 130
LR + GAGLDV PEPLP HPL L N
Sbjct: 242 ALRG-HLFGAGLDVTDPEPLPPGHPLYALPNA 272
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SDF+ + LT++T LI ++ LMK TAILIN +RG ++D ALV+ L++ I GAG
Sbjct: 204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAG 263
Query: 110 LDVMIPEPLPADHPLVQLDNC 130
LDV EP + L +LDN
Sbjct: 264 LDVFEEEPY-YNEELFKLDNV 283
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SDF+ + LT++T LI ++ L K TAILIN +RG ++D ALV+ L++ I GAG
Sbjct: 204 ESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAG 263
Query: 110 LDVMIPEPLPADHPLVQLDNC 130
LDV EP + L +LDN
Sbjct: 264 LDVFEEEPY-YNEELFKLDNV 283
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 48/92 (52%)
Query: 33 GGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD 92
G QVY + + AQ+D I T++T L +F KP AIL N RG ++
Sbjct: 177 AGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 93 QEALVEFLRDKKIGGAGLDVMIPEPLPADHPL 124
+ L+ LR K+G A LDV EPLPAD PL
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPL 268
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 52 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
D + + C L +TE +I + L K A L+NT+RG L D++A+V L ++ G D
Sbjct: 249 DVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGD 308
Query: 112 VMIPEPLPADHPLVQLDNCG 131
V P+P P DHP + + G
Sbjct: 309 VWFPQPAPNDHPWRTMPHNG 328
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 52 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
D + + C L +TE +I + L K A L+NT+RG L D++A+V L ++ G D
Sbjct: 250 DVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGD 309
Query: 112 VMIPEPLPADHPLVQLDNCG 131
V P+P P DHP + + G
Sbjct: 310 VWFPQPAPNDHPWRTMPHNG 329
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 52 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
D + + C L +TE +I + L K A ++NT+RG L D++A+ L ++ G D
Sbjct: 249 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD 308
Query: 112 VMIPEPLPADHPL 124
V P+P P DHP
Sbjct: 309 VWFPQPAPKDHPW 321
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 52 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
D + + C L +TE +I + L K A ++NT+RG L D++A+ L ++ G D
Sbjct: 250 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD 309
Query: 112 VMIPEPLPADHPL 124
V P+P P DHP
Sbjct: 310 VWFPQPAPKDHPW 322
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 52 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
D + + C L +TE +I + L K A ++NT+RG L D++A+ L ++ G D
Sbjct: 250 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD 309
Query: 112 VMIPEPLPADHPL 124
V P+P P DHP
Sbjct: 310 VWFPQPAPKDHPW 322
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
SD + + T+ ++G K+ SLMKP ++LIN SRG ++D AL + L K + GA +
Sbjct: 204 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAI 263
Query: 111 DVMIPEPL----PADHPLVQLDNC 130
DV EP P PL + DN
Sbjct: 264 DVFPTEPATNSDPFTSPLAEFDNV 287
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
SD + + T+ ++G K+ SLMKP ++LIN SRG ++D AL + L K + GA +
Sbjct: 204 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAI 263
Query: 111 DVMIPEPL----PADHPLVQLDNC 130
DV EP P PL + DN
Sbjct: 264 DVFPTEPATNSDPFTSPLAEFDNV 287
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
QSD + V L +T +I + MKPTA+ +NTSR L+++ +V L + G A
Sbjct: 215 QSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAA 274
Query: 110 LDVMIPEPLPADHPLVQLDNC 130
+DV EP+ H L++++NC
Sbjct: 275 IDVFETEPILQGHTLLRMENC 295
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
SD + + T+ ++G K+ SLMKP ++LIN SRG ++D AL + L K + GA +
Sbjct: 203 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAI 262
Query: 111 DVMIPEPL----PADHPLVQLDN 129
DV EP P PL + DN
Sbjct: 263 DVFPTEPATNSDPFTSPLCEFDN 285
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 40/79 (50%)
Query: 52 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
+FI LT T L + F K +LIN RG +D AL+ L ++ A LD
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 112 VMIPEPLPADHPLVQLDNC 130
V PEPLP DHPL Q D+
Sbjct: 253 VTEPEPLPTDHPLWQRDDV 271
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 127 LDNCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEI 176
L N G G +D AL+ L ++ A LDV PEP+P DHPL Q D+ I
Sbjct: 223 LINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLI 273
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 48 SAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
++ SD + V C LT +T +I R+ + P +LIN RG +D+ LV L + ++GG
Sbjct: 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272
Query: 108 AGLDVM-----IPEPLPADHPLVQLDNCGNGLLD 136
AGLDV +PE L +V L + G+G ++
Sbjct: 273 AGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVE 306
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
AQ+D + V L T+ LI ++ S K A L+NT+RG + E + L ++ G
Sbjct: 220 AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGY 279
Query: 109 GLDVMIPEPLPADHPLVQLDN---CGNGL 134
G DV P+P P DHP + N GN +
Sbjct: 280 GGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
AQ+D + V L T+ LI ++ S K A L+NT+RG + E + L ++ G
Sbjct: 221 AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGY 280
Query: 109 GLDVMIPEPLPADHPLVQLDN---CGNGL 134
G DV P+P P DHP + N GN +
Sbjct: 281 GGDVWFPQPAPKDHPWRDMRNKYGAGNAM 309
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
A++DFI V T +T LI ++ + KP I++N +RGGL+D+ AL + + + A
Sbjct: 194 ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAA 253
Query: 109 GLDVMIPEPLPADHPLVQL 127
GLDV EP D PL +L
Sbjct: 254 GLDVFATEPC-TDSPLFEL 271
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
A++DFI V T +T LI ++ + KP I++N +RGGL+D+ AL + + + A
Sbjct: 195 ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAA 254
Query: 109 GLDVMIPEPLPADHPLVQL 127
GLDV EP D PL +L
Sbjct: 255 GLDVFATEPC-TDSPLFEL 272
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
++D + + L TE +IG KQ MK +A LIN +RG L+D AL++ L+D +I GAG
Sbjct: 200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAG 259
Query: 110 LDVMIPE 116
LD + E
Sbjct: 260 LDTLAGE 266
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
SD + + C L + LI M+ A L+NT+RGGL+D++AL + L++ +I GA
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 110 LDVMIPEPL 118
LDV EP
Sbjct: 286 LDVHESEPF 294
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
SD + + C L + LI M+ A L+NT+RGGL+D++AL + L++ +I GA
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 110 LDVMIPEPL 118
LDV EP
Sbjct: 286 LDVHESEPF 294
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
SD + + C L + LI M+ A L+NT+RGGL+D++AL + L++ +I GA
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 110 LDVMIPEPL 118
LDV EP
Sbjct: 286 LDVHESEPF 294
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
QSD + + C L + LI M+ A L+N +RGGL+D++AL + L++ +I GA
Sbjct: 207 QSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAA 266
Query: 110 LDVMIPEPLP-ADHPL 124
LDV EP A PL
Sbjct: 267 LDVHESEPFSFAQGPL 282
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
SD + + C L + LI M+ A L+NT+RGGL+D++AL + L++ +I GA
Sbjct: 223 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 282
Query: 110 LDVMIPEPLP 119
LDV EP
Sbjct: 283 LDVHESEPFS 292
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
SD + + T+ G K+ SL KP ++LIN SRG ++D AL + L K + GA +
Sbjct: 198 SDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLAGAAI 257
Query: 111 DVMIPEPL----PADHPLVQLDNC 130
DV EP P PL + DN
Sbjct: 258 DVFPTEPATNSDPFTSPLAEFDNV 281
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+ D I + LT+ T + ++ +K +++N +RG +++++A+V+ + IGG
Sbjct: 226 KCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYS 285
Query: 110 LDVMIPEPLPADHPLVQLDN 129
DV P+P P DHP + N
Sbjct: 286 GDVWDPQPAPKDHPWRYMPN 305
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 127 LDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 173
++N +++++A+V+ + IGG DV P+P P DHP + N
Sbjct: 259 VNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 305
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+ D I + LT+ T + ++ +K +++N +RG +++++A+V+ + IGG
Sbjct: 220 KCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYS 279
Query: 110 LDVMIPEPLPADHPLVQLDN 129
DV P+P P DHP + N
Sbjct: 280 GDVWDPQPAPKDHPWRYMPN 299
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 127 LDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 173
++N +++++A+V+ + IGG DV P+P P DHP + N
Sbjct: 253 VNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 299
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
SD + V A + T+ ++ + P I++N +RG ++D++AL+E L+ I GAGL
Sbjct: 223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGL 282
Query: 111 DVMIPEP 117
DV + EP
Sbjct: 283 DVFVNEP 289
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 134 LLDQEALVEFLRDKKIGGAGLDVMIPEP 161
++D++AL+E L+ I GAGLDV + EP
Sbjct: 262 VVDEDALIEALKSGTIAGAGLDVFVNEP 289
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
SD + + T+ G K+ SL KP ++LIN SRG ++D AL + L K + GA +
Sbjct: 204 SDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAAI 263
Query: 111 DVMIPEPL----PADHPLVQLDN 129
DV EP P PL + DN
Sbjct: 264 DVFPTEPATNSDPFTSPLCEFDN 286
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SDFIFV A+T + ++ +G + FS + A I SR ++D +AL + I A
Sbjct: 230 KSDFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS 289
Query: 110 LDVMIPEPLPADHPLVQL 127
DV EPLP DHP+ L
Sbjct: 290 -DVYPEEPLPLDHPVRSL 306
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SD + V+ K T LI F+ MKP + ++NT+RG ++ Q+AL+ L+ K+ AG
Sbjct: 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAG 279
Query: 110 LDVMIPEP 117
LDV EP
Sbjct: 280 LDVHEFEP 287
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SD + V+ K T LI F+ MKP + ++NT+RG ++ Q+AL+ L+ K+ AG
Sbjct: 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAG 279
Query: 110 LDVMIPEP 117
LDV EP
Sbjct: 280 LDVHEFEP 287
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SD + V+ K T LI F+ MKP + ++NT+RG ++ Q+AL+ L+ K+ AG
Sbjct: 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAG 279
Query: 110 LDVMIPEP 117
LDV EP
Sbjct: 280 LDVHEFEP 287
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A++ L ++GG
Sbjct: 200 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 259
Query: 109 GLDVMIPEPLP-ADHP 123
DV E AD P
Sbjct: 260 AADVFEXEDWARADRP 275
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A++ L ++GG
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 109 GLDVMIPEPLP-ADHP 123
DV E AD P
Sbjct: 259 AADVFEMEDWARADRP 274
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A++ L ++GG
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 109 GLDVMIPEPLP-ADHP 123
DV E AD P
Sbjct: 259 AADVFEMEDWARADRP 274
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A++ L ++GG
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 109 GLDVMIPEPLP-ADHP 123
DV E AD P
Sbjct: 259 AADVFEMEDWARADRP 274
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A++ L ++GG
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 109 GLDVMIPEPLP-ADHP 123
DV E AD P
Sbjct: 259 AADVFEMEDWARADRP 274
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 52 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
DFI V L T L+ F+ K ++N +RGG++D+ AL+ L+ + GA LD
Sbjct: 221 DFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALD 280
Query: 112 VMIPEPLPADHPLVQLDN 129
V EP P D LV +N
Sbjct: 281 VFTEEP-PRDRALVDHEN 297
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 125 VQLDNCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 173
V++ NC G ++D+ AL+ L+ + GA LDV EP P D LV +N
Sbjct: 249 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEN 297
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
QSD I + + +I F+LMKP AI+INT+R L+D +A++ L+ K+ G G
Sbjct: 197 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVG 256
Query: 110 LD 111
+D
Sbjct: 257 ID 258
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
SD I + ++KD + +I QF LMK I++NTSR ++ +AL+++++ K+
Sbjct: 196 NSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYA 255
Query: 110 LDVMIPEP 117
DV EP
Sbjct: 256 TDVFWNEP 263
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SD I + K+ ++ R MK AIL+N +RG L+D EA++E + K+GG G
Sbjct: 198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYG 257
Query: 110 LDVM 113
DV+
Sbjct: 258 CDVL 261
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 127 LDNCGNG-LLDQEALVEFLRDKKIGGAGLDVM 157
L NC G L+D EA++E + K+GG G DV+
Sbjct: 230 LVNCARGQLVDTEAVIEAVESGKLGGYGCDVL 261
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
SD + + +K T +LI + MK A LIN +RG +D EAL + L++ + GA +
Sbjct: 209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAI 268
Query: 111 DVMIPEPLPADH----PLVQLDNC 130
DV EP PL L+N
Sbjct: 269 DVFPVEPASNGERFSTPLQGLENV 292
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SD I + TK+T I ++ SL K LINT+RG ++D +AL + K G G
Sbjct: 194 ESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLG 253
Query: 110 LDVMIPEPL 118
LDV E +
Sbjct: 254 LDVFEDEEI 262
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
+SD + + LT+DT +I ++ ++ L+N RG L+D++A+ E ++ K+ G
Sbjct: 200 KSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYA 258
Query: 110 LDVMIPEPLPADHPLVQLD 128
DV EP+ +H L + +
Sbjct: 259 TDVFEKEPV-REHELFKYE 276
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 127 LDNCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLD 172
L N G G L+D++A+ E ++ K+ G DV EP+ +H L + +
Sbjct: 231 LVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPV-REHELFKYE 276
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
SD + + + + + + + A++IN SRG L++ +AL+E LR K + AGL
Sbjct: 228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGL 287
Query: 111 DVMIPEP 117
DV EP
Sbjct: 288 DVFANEP 294
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 134 LLDQEALVEFLRDKKIGGAGLDVMIPEP 161
L++ +AL+E LR K + AGLDV EP
Sbjct: 267 LINDDALIEALRSKHLFAAGLDVFANEP 294
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
S F + T +T + + AI++NT+RG L+D E +V L ++ AG
Sbjct: 203 SQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGF 262
Query: 111 DVMIPEP 117
DV EP
Sbjct: 263 DVFAGEP 269
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 49 AQSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKK 104
A++D I + L +D T L+ + + ++P L+N SRG ++D +AL L
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE--- 222
Query: 105 IGGAGLDVMI 114
GGA L+V +
Sbjct: 223 -GGADLEVAL 231
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 35 SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 94
K+ Y + + Q+D I + +I + + MK +++N SRG L+D +
Sbjct: 184 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD 243
Query: 95 ALVEFLRDKKIGGAGLDV 112
A++ L KI G +DV
Sbjct: 244 AVIRGLDSGKIFGYAMDV 261
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 35 SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 94
K+ Y + + Q+D I + +I + + MK +++N SRG L+D +
Sbjct: 184 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD 243
Query: 95 ALVEFLRDKKIGGAGLDV 112
A++ L KI G +DV
Sbjct: 244 AVIRGLDSGKIFGYAMDV 261
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ 126
A ++N +RG + + L+ L K+ GA LDV EPLP + PL +
Sbjct: 223 AYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWR 269
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 129 NCGNGLLDQEA-LVEFLRDKKIGGAGLDVMIPEPMPADHPLVQ 170
N G+ QEA L+ L K+ GA LDV EP+P + PL +
Sbjct: 227 NLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWR 269
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 107 GAGLDVMI------PEPLPADHPLVQLDNCGNGLLDQEALV 141
GAG+D ++ PE L A PL +L++ G GL QE V
Sbjct: 67 GAGVDAILSKLNAHPEXLDASIPLFRLEDTGXGLQXQEYAV 107
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 35 SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 94
K+ Y + + Q+D I + +I K + MK +++N SRG L+D +
Sbjct: 184 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTD 243
Query: 95 ALVEFLRDKKIGGAGLD 111
A++ L KI G +D
Sbjct: 244 AVIRGLDSGKIFGFVMD 260
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
QSDF+ + LT T + + + + ++N +R ++ + + FL+++
Sbjct: 173 QSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKERS----- 227
Query: 110 LDVMIPEPLPADHPLVQLDNCGNGLL 135
DV + + P + N N +L
Sbjct: 228 -DVWYLSDVWWNEPEITETNLRNAIL 252
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 50 QSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKI 105
++D + L KD T L +KP AILIN RG ++D AL+ L +
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229
Query: 106 GGAGLDVMIPEP 117
LDV EP
Sbjct: 230 LSVVLDVWEGEP 241
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 30.0 bits (66), Expect = 0.79, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 79 TAILINTSRGGLLDQEALVEFLRD-KKIGGAG--LDVMIP 115
T I++ ++G D EAL+EF+ D +K GG G LD +IP
Sbjct: 532 TLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIP 571
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 30.0 bits (66), Expect = 0.82, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 79 TAILINTSRGGLLDQEALVEFLRD-KKIGGAG--LDVMIP 115
T I++ ++G D EAL+EF+ D +K GG G LD +IP
Sbjct: 731 TLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIP 770
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 30.0 bits (66), Expect = 0.83, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 79 TAILINTSRGGLLDQEALVEFLRD-KKIGGAG--LDVMIP 115
T I++ ++G D EAL+EF+ D +K GG G LD +IP
Sbjct: 731 TLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIP 770
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 57 TCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPE 116
+ L K+ Q I F +KPT + N + G + L R ++I V++P
Sbjct: 180 SVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLD---RVREIAAKEGAVVVPV 236
Query: 117 PLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMI 158
+ + +LD+ E VEFL+D I GL+ +I
Sbjct: 237 CAAIESEIAELDD--------EEKVEFLQDLGIEEPGLNRVI 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,625,217
Number of Sequences: 62578
Number of extensions: 222506
Number of successful extensions: 381
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 113
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)