Query psy5266
Match_columns 180
No_of_seqs 148 out of 1718
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:58:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 1.5E-32 3.3E-37 232.2 11.5 123 11-133 150-280 (324)
2 PRK08410 2-hydroxyacid dehydro 100.0 1.8E-30 3.9E-35 218.7 11.8 121 11-133 153-281 (311)
3 PF02826 2-Hacid_dh_C: D-isome 100.0 2.7E-31 5.9E-36 207.3 6.0 125 11-135 44-176 (178)
4 PRK06487 glycerate dehydrogena 100.0 1.2E-29 2.6E-34 214.3 11.5 120 11-133 156-282 (317)
5 PRK15409 bifunctional glyoxyla 100.0 9.4E-30 2E-34 215.4 10.9 123 11-133 153-283 (323)
6 KOG0068|consensus 100.0 5E-30 1.1E-34 213.6 9.0 159 11-170 154-337 (406)
7 PRK06932 glycerate dehydrogena 100.0 1.8E-29 3.9E-34 212.9 11.4 121 11-133 155-284 (314)
8 COG1052 LdhA Lactate dehydroge 100.0 1.7E-29 3.7E-34 213.5 10.0 123 11-133 154-286 (324)
9 PRK11790 D-3-phosphoglycerate 100.0 1.2E-28 2.6E-33 214.5 11.3 142 11-152 159-324 (409)
10 PLN02306 hydroxypyruvate reduc 100.0 3.2E-28 6.9E-33 210.2 11.3 143 11-154 173-354 (386)
11 PLN02928 oxidoreductase family 100.0 3.4E-28 7.5E-33 207.6 10.7 123 11-133 167-309 (347)
12 PLN03139 formate dehydrogenase 99.9 1.5E-27 3.3E-32 205.7 8.7 123 11-133 207-338 (386)
13 PRK15469 ghrA bifunctional gly 99.9 1.6E-27 3.4E-32 200.9 8.3 123 11-133 144-273 (312)
14 PRK07574 formate dehydrogenase 99.9 8E-28 1.7E-32 207.4 5.9 123 11-133 200-331 (385)
15 TIGR01327 PGDH D-3-phosphoglyc 99.9 2.5E-27 5.5E-32 211.9 6.8 160 11-171 146-329 (525)
16 PRK13581 D-3-phosphoglycerate 99.9 4E-27 8.8E-32 210.6 7.7 161 11-172 148-331 (526)
17 PRK13243 glyoxylate reductase; 99.9 1.7E-26 3.7E-31 196.2 9.8 122 11-133 158-286 (333)
18 PRK15438 erythronate-4-phospha 99.9 4.1E-25 8.8E-30 190.1 11.4 120 11-133 124-252 (378)
19 PRK06436 glycerate dehydrogena 99.9 2.3E-24 5E-29 181.0 11.7 118 11-133 130-253 (303)
20 KOG0069|consensus 99.9 1.1E-25 2.4E-30 189.7 3.4 120 11-133 170-299 (336)
21 PRK00257 erythronate-4-phospha 99.9 2.4E-24 5.2E-29 185.7 11.5 120 11-133 124-252 (381)
22 PRK12480 D-lactate dehydrogena 99.9 2.4E-24 5.1E-29 183.0 7.3 123 11-133 154-294 (330)
23 PRK08605 D-lactate dehydrogena 99.9 2.4E-22 5.3E-27 170.8 10.4 123 11-133 154-296 (332)
24 COG0111 SerA Phosphoglycerate 99.8 6.4E-21 1.4E-25 161.4 5.2 114 59-178 139-281 (324)
25 PF02826 2-Hacid_dh_C: D-isome 99.8 3E-20 6.5E-25 145.0 1.3 116 58-178 32-175 (178)
26 PRK06932 glycerate dehydrogena 99.8 2.8E-19 6E-24 151.0 5.0 114 59-178 144-285 (314)
27 PRK06487 glycerate dehydrogena 99.8 3.3E-19 7.1E-24 150.7 5.1 114 59-178 145-283 (317)
28 PRK08410 2-hydroxyacid dehydro 99.8 5.2E-19 1.1E-23 149.2 5.0 114 58-178 141-282 (311)
29 PRK15409 bifunctional glyoxyla 99.7 8.1E-19 1.8E-23 148.7 5.0 115 58-178 141-284 (323)
30 PLN02928 oxidoreductase family 99.7 9.9E-19 2.1E-23 149.5 5.0 116 58-178 155-310 (347)
31 PRK07574 formate dehydrogenase 99.7 2.5E-18 5.5E-23 148.5 1.9 115 58-178 188-332 (385)
32 PLN03139 formate dehydrogenase 99.7 3.7E-18 7.9E-23 147.6 2.0 115 58-178 195-339 (386)
33 PRK15469 ghrA bifunctional gly 99.7 6.7E-18 1.4E-22 142.5 3.1 115 59-178 133-274 (312)
34 PRK11790 D-3-phosphoglycerate 99.7 2E-17 4.4E-22 144.2 3.5 115 58-178 147-291 (409)
35 PRK13243 glyoxylate reductase; 99.7 4.6E-17 9.9E-22 138.5 4.5 115 58-178 146-287 (333)
36 PLN02306 hydroxypyruvate reduc 99.6 1.2E-16 2.7E-21 138.2 4.4 115 58-178 161-319 (386)
37 COG1052 LdhA Lactate dehydroge 99.6 1.1E-16 2.3E-21 135.7 3.9 131 42-178 119-287 (324)
38 PRK13581 D-3-phosphoglycerate 99.6 3.1E-16 6.7E-21 140.7 3.4 115 58-178 136-277 (526)
39 TIGR01327 PGDH D-3-phosphoglyc 99.6 5.6E-16 1.2E-20 139.0 4.4 115 58-178 134-276 (525)
40 KOG0068|consensus 99.6 1E-15 2.3E-20 128.3 2.5 118 55-178 139-286 (406)
41 KOG0069|consensus 99.6 2.3E-15 5E-20 127.3 4.0 112 61-178 161-300 (336)
42 PRK06436 glycerate dehydrogena 99.5 1.4E-14 3E-19 121.9 4.6 113 58-178 118-254 (303)
43 PRK12480 D-lactate dehydrogena 99.5 3.1E-15 6.7E-20 127.2 0.5 121 58-178 142-295 (330)
44 PRK15438 erythronate-4-phospha 99.5 3.8E-14 8.2E-19 122.3 5.4 118 58-178 112-253 (378)
45 PRK00257 erythronate-4-phospha 99.5 7.4E-14 1.6E-18 120.7 5.7 118 58-178 112-253 (381)
46 PRK08605 D-lactate dehydrogena 99.4 8.6E-14 1.9E-18 118.5 4.8 115 59-178 143-297 (332)
47 KOG0067|consensus 99.1 5.3E-11 1.2E-15 101.2 5.5 117 11-133 186-310 (435)
48 PTZ00075 Adenosylhomocysteinas 98.6 5.7E-08 1.2E-12 86.0 6.7 97 11-118 262-366 (476)
49 PLN02494 adenosylhomocysteinas 98.6 2.5E-08 5.4E-13 88.2 4.4 101 11-116 262-373 (477)
50 TIGR00936 ahcY adenosylhomocys 98.2 1.6E-06 3.5E-11 75.8 4.5 99 11-114 203-311 (406)
51 PRK13403 ketol-acid reductoiso 98.1 1.5E-06 3.3E-11 73.8 2.5 76 11-88 24-107 (335)
52 TIGR02853 spore_dpaA dipicolin 97.3 0.00016 3.4E-09 60.6 2.8 78 11-93 159-248 (287)
53 TIGR01505 tartro_sem_red 2-hyd 97.2 0.00016 3.4E-09 60.2 1.4 103 11-113 7-120 (291)
54 PRK11559 garR tartronate semia 97.2 0.00045 9.8E-09 57.5 4.0 105 11-115 10-125 (296)
55 PRK05476 S-adenosyl-L-homocyst 97.1 0.00063 1.4E-08 60.0 4.2 85 11-99 220-313 (425)
56 PRK05225 ketol-acid reductoiso 96.7 0.00047 1E-08 61.1 0.7 75 11-88 44-132 (487)
57 PF00670 AdoHcyase_NAD: S-aden 96.7 0.0012 2.7E-08 50.8 2.8 84 12-99 32-124 (162)
58 PRK12490 6-phosphogluconate de 96.3 0.0022 4.9E-08 53.7 2.1 102 11-113 8-121 (299)
59 PRK15461 NADH-dependent gamma- 96.0 0.01 2.2E-07 49.7 4.6 105 11-115 9-124 (296)
60 TIGR01692 HIBADH 3-hydroxyisob 95.7 0.0071 1.5E-07 50.3 2.5 103 11-113 4-117 (288)
61 PRK08306 dipicolinate synthase 95.7 0.01 2.2E-07 49.9 3.2 72 11-87 160-242 (296)
62 cd00401 AdoHcyase S-adenosyl-L 95.4 0.017 3.7E-07 50.9 3.7 84 11-98 210-302 (413)
63 PRK09599 6-phosphogluconate de 95.4 0.011 2.4E-07 49.5 2.5 102 11-113 8-121 (301)
64 PF03446 NAD_binding_2: NAD bi 95.3 0.0074 1.6E-07 46.1 1.1 103 11-113 9-121 (163)
65 PLN02712 arogenate dehydrogena 94.5 0.012 2.7E-07 54.7 0.5 92 11-103 377-477 (667)
66 PRK05479 ketol-acid reductoiso 94.5 0.0065 1.4E-07 52.0 -1.3 46 41-88 64-109 (330)
67 TIGR01724 hmd_rel H2-forming N 94.2 0.11 2.3E-06 44.5 5.4 78 21-102 43-129 (341)
68 COG2084 MmsB 3-hydroxyisobutyr 93.8 0.084 1.8E-06 44.3 4.1 107 11-117 8-126 (286)
69 PRK09287 6-phosphogluconate de 92.9 0.2 4.3E-06 44.8 5.3 96 21-117 13-120 (459)
70 PLN02350 phosphogluconate dehy 92.9 0.12 2.7E-06 46.5 3.9 106 11-117 14-138 (493)
71 PLN02858 fructose-bisphosphate 92.8 0.05 1.1E-06 54.6 1.4 104 11-114 332-448 (1378)
72 PRK15059 tartronate semialdehy 92.5 0.064 1.4E-06 44.9 1.6 76 39-114 44-121 (292)
73 PLN02712 arogenate dehydrogena 92.2 0.046 1E-06 51.0 0.3 91 11-102 60-159 (667)
74 PTZ00142 6-phosphogluconate de 92.0 0.045 9.8E-07 49.0 0.0 106 11-117 9-132 (470)
75 PLN02256 arogenate dehydrogena 91.4 0.06 1.3E-06 45.5 0.1 92 11-103 44-144 (304)
76 PRK14619 NAD(P)H-dependent gly 91.0 0.039 8.4E-07 46.4 -1.4 72 11-89 12-85 (308)
77 TIGR00518 alaDH alanine dehydr 90.9 0.35 7.5E-06 42.0 4.3 76 11-86 175-267 (370)
78 PRK11199 tyrA bifunctional cho 90.7 0.19 4E-06 43.7 2.5 71 11-88 107-177 (374)
79 PLN02858 fructose-bisphosphate 90.3 0.14 3.1E-06 51.5 1.6 104 11-114 12-128 (1378)
80 PRK14189 bifunctional 5,10-met 89.8 0.43 9.4E-06 40.1 3.9 42 41-89 192-233 (285)
81 PTZ00075 Adenosylhomocysteinas 89.7 0.36 7.8E-06 43.4 3.5 102 44-163 241-367 (476)
82 COG0499 SAM1 S-adenosylhomocys 88.9 0.87 1.9E-05 39.6 5.1 57 39-99 253-310 (420)
83 PRK08655 prephenate dehydrogen 88.5 0.24 5.3E-06 43.9 1.6 90 11-102 9-108 (437)
84 PRK08818 prephenate dehydrogen 88.5 0.074 1.6E-06 46.2 -1.6 67 11-87 13-89 (370)
85 KOG0067|consensus 88.0 0.24 5.1E-06 43.1 1.1 35 41-75 105-139 (435)
86 PRK12557 H(2)-dependent methyl 87.8 0.76 1.6E-05 39.5 4.1 79 22-101 44-132 (342)
87 KOG1370|consensus 87.7 0.91 2E-05 38.8 4.4 79 12-94 223-310 (434)
88 PLN02494 adenosylhomocysteinas 87.7 0.4 8.8E-06 43.0 2.4 111 41-160 238-373 (477)
89 cd05212 NAD_bind_m-THF_DH_Cycl 86.2 2.1 4.6E-05 32.1 5.3 40 43-89 64-103 (140)
90 TIGR00872 gnd_rel 6-phosphoglu 84.9 2.1 4.6E-05 35.8 5.3 101 11-113 8-120 (298)
91 PRK08306 dipicolinate synthase 84.5 5.7 0.00012 33.3 7.7 66 37-107 42-117 (296)
92 TIGR00873 gnd 6-phosphoglucona 84.5 1.8 3.9E-05 38.8 4.9 106 11-117 7-129 (467)
93 PF05222 AlaDh_PNT_N: Alanine 84.1 3.7 7.9E-05 30.5 5.7 63 42-114 56-118 (136)
94 TIGR01546 GAPDH-II_archae glyc 81.8 2.5 5.5E-05 36.3 4.6 45 41-88 66-110 (333)
95 TIGR03026 NDP-sugDHase nucleot 80.2 26 0.00057 30.5 10.6 63 40-102 66-137 (411)
96 PLN02688 pyrroline-5-carboxyla 79.7 1.7 3.7E-05 35.3 2.8 61 39-103 50-110 (266)
97 PRK13302 putative L-aspartate 78.1 3.6 7.7E-05 34.1 4.3 62 40-106 57-118 (271)
98 PRK14190 bifunctional 5,10-met 77.8 5 0.00011 33.7 5.0 41 42-89 193-233 (284)
99 PRK06545 prephenate dehydrogen 77.6 0.44 9.6E-06 41.0 -1.3 56 41-99 51-108 (359)
100 TIGR02371 ala_DH_arch alanine 77.2 6.3 0.00014 33.5 5.6 42 39-86 181-222 (325)
101 PRK14618 NAD(P)H-dependent gly 76.6 1.7 3.6E-05 36.7 1.9 58 39-102 63-123 (328)
102 PRK14174 bifunctional 5,10-met 76.2 3.6 7.9E-05 34.7 3.8 38 42-86 198-235 (295)
103 PRK14178 bifunctional 5,10-met 75.0 3.9 8.5E-05 34.3 3.7 38 42-86 187-224 (279)
104 TIGR00561 pntA NAD(P) transhyd 74.7 8.2 0.00018 35.2 5.9 46 44-89 241-289 (511)
105 PRK07066 3-hydroxybutyryl-CoA 74.6 15 0.00032 31.4 7.1 71 40-113 73-143 (321)
106 PF03720 UDPG_MGDP_dh_C: UDP-g 74.5 4.9 0.00011 28.2 3.6 64 20-85 29-100 (106)
107 PRK14188 bifunctional 5,10-met 74.2 1.4 3E-05 37.2 0.8 38 43-87 194-231 (296)
108 COG0686 Ald Alanine dehydrogen 73.5 3.2 6.9E-05 35.7 2.8 53 41-93 222-277 (371)
109 COG0287 TyrA Prephenate dehydr 72.5 2.5 5.4E-05 35.3 2.0 81 44-133 58-142 (279)
110 PRK14194 bifunctional 5,10-met 71.0 1.8 3.9E-05 36.7 0.8 39 42-87 194-232 (301)
111 cd01080 NAD_bind_m-THF_DH_Cycl 70.8 8.4 0.00018 29.7 4.4 45 41-92 78-122 (168)
112 PF01262 AlaDh_PNT_C: Alanine 70.7 4.5 9.8E-05 30.8 2.9 44 43-86 95-139 (168)
113 PF08123 DOT1: Histone methyla 68.9 3.8 8.2E-05 32.7 2.2 43 44-87 116-159 (205)
114 cd01079 NAD_bind_m-THF_DH NAD 68.2 13 0.00027 29.7 5.0 39 44-89 120-159 (197)
115 TIGR00936 ahcY adenosylhomocys 68.2 3.3 7.1E-05 36.6 1.8 107 59-171 192-321 (406)
116 TIGR02853 spore_dpaA dipicolin 68.1 33 0.00072 28.6 7.8 83 21-108 24-117 (287)
117 PLN02353 probable UDP-glucose 67.4 68 0.0015 28.9 10.0 92 41-136 69-180 (473)
118 PRK14184 bifunctional 5,10-met 67.4 7.5 0.00016 32.7 3.7 38 42-86 196-233 (286)
119 PF02882 THF_DHG_CYH_C: Tetrah 67.4 7.9 0.00017 29.7 3.6 42 42-90 71-112 (160)
120 TIGR00465 ilvC ketol-acid redu 65.8 5.9 0.00013 33.6 2.9 48 40-89 49-96 (314)
121 PRK06928 pyrroline-5-carboxyla 65.6 9.3 0.0002 31.5 4.0 61 41-105 55-115 (277)
122 PRK15057 UDP-glucose 6-dehydro 65.6 44 0.00096 29.2 8.3 85 43-133 66-161 (388)
123 PRK06407 ornithine cyclodeamin 65.5 18 0.00039 30.4 5.8 43 39-87 171-213 (301)
124 PRK09260 3-hydroxybutyryl-CoA 64.8 6 0.00013 32.7 2.7 70 40-113 71-141 (288)
125 PRK07340 ornithine cyclodeamin 64.7 13 0.00027 31.3 4.6 40 41-87 179-218 (304)
126 KOG0409|consensus 64.3 13 0.00027 31.8 4.4 92 21-112 58-156 (327)
127 PRK07531 bifunctional 3-hydrox 62.9 9.6 0.00021 34.3 3.8 65 39-105 69-133 (495)
128 PRK10792 bifunctional 5,10-met 61.8 13 0.00029 31.2 4.2 39 41-86 193-231 (285)
129 PF01210 NAD_Gly3P_dh_N: NAD-d 61.2 9.4 0.0002 28.6 3.0 62 38-105 57-127 (157)
130 PRK14191 bifunctional 5,10-met 61.1 10 0.00023 31.8 3.5 39 42-87 192-230 (285)
131 TIGR01723 hmd_TIGR 5,10-methen 60.8 72 0.0016 27.2 8.2 93 41-145 130-227 (340)
132 cd01065 NAD_bind_Shikimate_DH 60.5 47 0.001 24.1 6.7 61 40-105 71-133 (155)
133 PF02423 OCD_Mu_crystall: Orni 60.5 11 0.00023 31.9 3.5 46 39-88 181-226 (313)
134 PRK05472 redox-sensing transcr 60.5 2.4 5.3E-05 33.6 -0.4 63 40-102 134-201 (213)
135 PF02056 Glyco_hydro_4: Family 60.1 16 0.00034 28.7 4.1 64 38-101 61-159 (183)
136 PF01488 Shikimate_DH: Shikima 60.0 21 0.00045 26.1 4.6 46 39-87 64-110 (135)
137 PRK07589 ornithine cyclodeamin 59.9 23 0.0005 30.6 5.5 43 40-86 183-225 (346)
138 PLN02545 3-hydroxybutyryl-CoA 59.3 6.5 0.00014 32.6 2.0 54 46-102 79-133 (295)
139 COG2875 CobM Precorrin-4 methy 59.0 28 0.00062 28.6 5.5 39 44-89 22-60 (254)
140 PRK14179 bifunctional 5,10-met 58.3 5.7 0.00012 33.4 1.5 38 42-86 193-230 (284)
141 PRK00961 H(2)-dependent methyl 58.1 75 0.0016 27.0 7.9 93 41-145 132-229 (342)
142 PRK14173 bifunctional 5,10-met 57.8 16 0.00035 30.8 4.0 41 42-89 190-230 (287)
143 PRK06823 ornithine cyclodeamin 57.8 23 0.00051 30.0 5.1 42 40-87 182-223 (315)
144 PRK07417 arogenate dehydrogena 57.7 1.5 3.3E-05 36.2 -2.1 75 11-87 8-92 (279)
145 PRK06199 ornithine cyclodeamin 57.3 27 0.00059 30.5 5.5 47 38-87 211-260 (379)
146 PRK14170 bifunctional 5,10-met 57.0 28 0.0006 29.3 5.3 40 42-88 192-231 (284)
147 PRK06046 alanine dehydrogenase 57.0 28 0.00061 29.5 5.5 40 40-86 184-223 (326)
148 PRK11064 wecC UDP-N-acetyl-D-m 56.6 6.8 0.00015 34.5 1.7 54 49-102 74-135 (415)
149 COG2423 Predicted ornithine cy 56.4 36 0.00077 29.3 6.0 44 38-87 183-226 (330)
150 PRK09424 pntA NAD(P) transhydr 55.0 36 0.00077 31.0 6.1 59 45-115 61-120 (509)
151 PRK14175 bifunctional 5,10-met 54.9 19 0.00042 30.3 4.1 39 42-87 193-231 (286)
152 cd01075 NAD_bind_Leu_Phe_Val_D 54.6 23 0.00051 27.8 4.4 88 11-105 36-133 (200)
153 PRK06035 3-hydroxyacyl-CoA deh 54.6 58 0.0013 26.8 6.9 72 42-117 78-149 (291)
154 PRK08618 ornithine cyclodeamin 54.4 22 0.00047 30.1 4.4 41 40-87 182-222 (325)
155 PRK06476 pyrroline-5-carboxyla 54.4 20 0.00044 29.0 4.1 58 40-103 51-108 (258)
156 PRK14169 bifunctional 5,10-met 54.1 18 0.0004 30.3 3.8 39 42-87 191-229 (282)
157 COG1486 CelF Alpha-galactosida 54.1 16 0.00034 32.7 3.5 71 38-108 65-168 (442)
158 PRK14181 bifunctional 5,10-met 54.0 20 0.00043 30.2 4.0 40 41-87 191-230 (287)
159 PLN02516 methylenetetrahydrofo 53.3 21 0.00046 30.2 4.1 39 41-86 201-239 (299)
160 PRK15182 Vi polysaccharide bio 51.9 1E+02 0.0022 27.3 8.3 93 41-133 67-174 (425)
161 COG0240 GpsA Glycerol-3-phosph 51.2 12 0.00026 32.1 2.3 66 38-105 59-129 (329)
162 PLN02616 tetrahydrofolate dehy 51.1 23 0.0005 30.8 4.0 39 41-86 265-303 (364)
163 PRK14177 bifunctional 5,10-met 51.0 24 0.00053 29.6 4.1 40 41-87 193-232 (284)
164 PRK08291 ectoine utilization p 50.9 30 0.00066 29.3 4.7 40 40-85 187-226 (330)
165 PRK14172 bifunctional 5,10-met 49.7 27 0.00059 29.3 4.1 39 41-86 192-230 (278)
166 PRK14186 bifunctional 5,10-met 49.6 26 0.00056 29.7 4.0 40 42-88 193-232 (297)
167 COG1004 Ugd Predicted UDP-gluc 49.2 80 0.0017 28.0 7.0 66 39-104 65-138 (414)
168 PF09370 TIM-br_sig_trns: TIM- 49.1 30 0.00066 28.8 4.3 58 49-109 169-244 (268)
169 PRK14193 bifunctional 5,10-met 49.0 27 0.00058 29.4 4.0 41 41-88 194-234 (284)
170 PLN02897 tetrahydrofolate dehy 47.8 28 0.00061 30.1 4.0 39 41-86 248-286 (345)
171 TIGR02992 ectoine_eutC ectoine 46.8 48 0.001 28.1 5.3 41 40-86 184-224 (326)
172 PRK14171 bifunctional 5,10-met 46.6 30 0.00066 29.1 4.0 39 41-86 193-231 (288)
173 PRK14166 bifunctional 5,10-met 46.5 30 0.00064 29.1 3.9 39 41-86 191-229 (282)
174 PRK14180 bifunctional 5,10-met 46.1 31 0.00067 29.0 4.0 38 42-86 193-230 (282)
175 PRK14182 bifunctional 5,10-met 46.1 31 0.00067 29.0 4.0 38 42-86 192-229 (282)
176 PRK14185 bifunctional 5,10-met 46.0 29 0.00063 29.3 3.8 39 41-86 195-233 (293)
177 PF02515 CoA_transf_3: CoA-tra 45.4 15 0.00032 28.6 1.8 44 42-85 12-55 (191)
178 cd05298 GH4_GlvA_pagL_like Gly 44.9 29 0.00064 30.9 3.8 71 38-108 62-165 (437)
179 PRK06141 ornithine cyclodeamin 44.9 56 0.0012 27.5 5.4 41 40-86 179-219 (314)
180 PRK06444 prephenate dehydrogen 44.8 4.5 9.7E-05 32.1 -1.2 34 11-61 9-42 (197)
181 PF03721 UDPG_MGDP_dh_N: UDP-g 44.5 23 0.0005 27.5 2.8 63 40-102 66-137 (185)
182 TIGR03376 glycerol3P_DH glycer 44.4 24 0.00052 30.4 3.1 50 39-90 71-120 (342)
183 PRK08293 3-hydroxybutyryl-CoA 43.5 22 0.00048 29.3 2.7 61 40-102 74-134 (287)
184 TIGR00561 pntA NAD(P) transhyd 43.0 52 0.0011 30.0 5.2 58 45-114 60-118 (511)
185 PRK14176 bifunctional 5,10-met 42.7 35 0.00076 28.8 3.7 40 41-87 198-237 (287)
186 PRK07530 3-hydroxybutyryl-CoA 42.3 24 0.00051 29.2 2.7 56 41-101 75-132 (292)
187 PRK14183 bifunctional 5,10-met 41.9 37 0.00081 28.5 3.8 38 42-86 192-229 (281)
188 PRK14168 bifunctional 5,10-met 41.9 41 0.00089 28.5 4.1 38 42-86 200-237 (297)
189 PRK14187 bifunctional 5,10-met 41.8 39 0.00084 28.6 3.9 38 42-86 195-232 (294)
190 PF07991 IlvN: Acetohydroxy ac 41.3 10 0.00022 29.4 0.3 47 39-88 49-96 (165)
191 COG2085 Predicted dinucleotide 40.8 5.5 0.00012 32.0 -1.2 66 39-107 49-129 (211)
192 PRK12491 pyrroline-5-carboxyla 40.6 22 0.00048 29.4 2.3 76 23-102 31-111 (272)
193 TIGR01851 argC_other N-acetyl- 40.3 11 0.00024 32.1 0.5 39 42-86 41-80 (310)
194 KOG3045|consensus 40.2 53 0.0011 27.7 4.3 58 49-106 227-285 (325)
195 cd05311 NAD_bind_2_malic_enz N 40.1 76 0.0016 25.4 5.3 54 43-103 90-143 (226)
196 PF02153 PDH: Prephenate dehyd 40.1 1.2E+02 0.0026 24.6 6.6 111 20-133 10-129 (258)
197 PRK14192 bifunctional 5,10-met 39.6 45 0.00097 27.9 4.0 40 40-86 192-231 (283)
198 PRK07502 cyclohexadienyl dehyd 39.4 29 0.00064 28.8 2.9 75 11-87 14-101 (307)
199 cd07387 MPP_PolD2_C PolD2 (DNA 38.7 49 0.0011 27.3 4.0 43 137-179 167-211 (257)
200 PF03807 F420_oxidored: NADP o 37.6 21 0.00047 23.8 1.5 20 42-61 53-72 (96)
201 PRK14167 bifunctional 5,10-met 36.3 53 0.0012 27.8 3.9 38 42-86 196-233 (297)
202 TIGR00347 bioD dethiobiotin sy 35.4 1.5E+02 0.0033 21.8 6.1 50 43-92 92-144 (166)
203 PRK07680 late competence prote 33.9 54 0.0012 26.7 3.6 58 40-101 52-109 (273)
204 PRK05398 formyl-coenzyme A tra 33.9 43 0.00093 29.5 3.1 43 43-85 82-124 (416)
205 TIGR01915 npdG NADPH-dependent 33.9 8.7 0.00019 30.5 -1.1 20 42-61 60-79 (219)
206 PTZ00345 glycerol-3-phosphate 33.6 31 0.00068 29.9 2.2 50 38-89 81-132 (365)
207 PRK05808 3-hydroxybutyryl-CoA 33.4 1.9E+02 0.004 23.6 6.7 60 41-103 74-133 (282)
208 PRK13403 ketol-acid reductoiso 32.4 27 0.0006 30.1 1.6 52 59-110 13-79 (335)
209 COG3288 PntA NAD/NADP transhyd 32.3 74 0.0016 27.4 4.1 45 44-89 238-286 (356)
210 PRK00094 gpsA NAD(P)H-dependen 31.9 42 0.00091 27.7 2.7 47 40-88 61-107 (325)
211 TIGR03026 NDP-sugDHase nucleot 31.1 86 0.0019 27.3 4.6 53 21-75 346-399 (411)
212 PRK03525 crotonobetainyl-CoA:c 30.7 45 0.00097 29.3 2.7 42 43-85 81-123 (405)
213 PRK08269 3-hydroxybutyryl-CoA 30.7 1.3E+02 0.0029 25.3 5.5 56 44-101 73-128 (314)
214 COG1023 Gnd Predicted 6-phosph 30.4 61 0.0013 27.1 3.2 93 11-106 8-114 (300)
215 PRK07819 3-hydroxybutyryl-CoA 30.4 1.1E+02 0.0025 25.2 5.0 71 40-115 75-147 (286)
216 cd05197 GH4_glycoside_hydrolas 30.4 53 0.0011 29.2 3.1 72 38-109 62-166 (425)
217 PF15366 DUF4597: Domain of un 30.0 50 0.0011 20.9 2.1 17 164-180 15-31 (62)
218 PRK07679 pyrroline-5-carboxyla 29.8 49 0.0011 27.1 2.7 59 40-102 55-113 (279)
219 PRK00748 1-(5-phosphoribosyl)- 29.5 89 0.0019 24.6 4.1 59 51-110 160-219 (233)
220 PLN00203 glutamyl-tRNA reducta 29.1 89 0.0019 28.6 4.4 35 40-77 319-353 (519)
221 KOG2711|consensus 28.6 75 0.0016 27.7 3.6 49 38-88 93-141 (372)
222 PRK11064 wecC UDP-N-acetyl-D-m 27.4 77 0.0017 27.9 3.6 40 22-61 355-397 (415)
223 TIGR03253 oxalate_frc formyl-C 27.2 68 0.0015 28.2 3.3 43 43-85 81-123 (415)
224 PRK11430 putative CoA-transfer 26.7 66 0.0014 28.0 3.1 43 43-85 86-128 (381)
225 TIGR02279 PaaC-3OHAcCoADH 3-hy 26.7 2.1E+02 0.0045 26.0 6.3 73 40-117 75-148 (503)
226 PF10727 Rossmann-like: Rossma 26.5 34 0.00075 25.1 1.1 45 40-86 58-104 (127)
227 PRK13304 L-aspartate dehydroge 25.8 84 0.0018 25.7 3.4 60 40-105 51-114 (265)
228 PRK14806 bifunctional cyclohex 25.7 85 0.0019 29.5 3.8 79 22-102 29-113 (735)
229 PRK06130 3-hydroxybutyryl-CoA 25.0 1.2E+02 0.0027 25.0 4.3 59 41-102 70-129 (311)
230 PRK05225 ketol-acid reductoiso 24.0 20 0.00043 32.4 -0.7 56 58-113 32-108 (487)
231 PF05148 Methyltransf_8: Hypot 23.7 36 0.00078 27.6 0.8 68 42-111 116-184 (219)
232 TIGR01035 hemA glutamyl-tRNA r 23.7 1.1E+02 0.0025 26.8 4.0 74 11-87 188-278 (417)
233 smart00859 Semialdhyde_dh Semi 23.6 52 0.0011 23.2 1.6 36 49-86 64-99 (122)
234 TIGR00658 orni_carb_tr ornithi 23.2 2.8E+02 0.0061 23.3 6.1 46 40-85 206-263 (304)
235 PF00389 2-Hacid_dh: D-isomer 22.9 1.1E+02 0.0024 21.8 3.3 56 42-105 30-85 (133)
236 PF04016 DUF364: Domain of unk 22.8 1.7E+02 0.0036 21.8 4.3 37 21-57 31-69 (147)
237 PF00208 ELFV_dehydrog: Glutam 22.8 1.5E+02 0.0033 24.1 4.4 54 46-105 109-164 (244)
238 KOG1975|consensus 22.2 1.2E+02 0.0025 26.5 3.5 68 41-112 183-259 (389)
239 PRK07634 pyrroline-5-carboxyla 21.6 71 0.0015 25.3 2.1 59 40-103 56-114 (245)
240 COG0345 ProC Pyrroline-5-carbo 21.6 2E+02 0.0044 23.9 4.9 59 41-107 53-114 (266)
241 TIGR02354 thiF_fam2 thiamine b 21.6 66 0.0014 25.3 1.9 42 42-84 102-143 (200)
242 PF02639 DUF188: Uncharacteriz 21.6 1.9E+02 0.004 21.3 4.2 50 44-105 45-95 (130)
243 COG2306 Predicted RNA-binding 21.5 1.4E+02 0.0029 23.5 3.5 50 101-150 81-138 (183)
244 COG1004 Ugd Predicted UDP-gluc 21.4 78 0.0017 28.1 2.4 40 20-59 342-385 (414)
245 PRK00048 dihydrodipicolinate r 21.3 22 0.00047 29.1 -1.0 20 40-59 50-69 (257)
246 PLN02342 ornithine carbamoyltr 21.3 2.9E+02 0.0062 23.9 5.9 47 39-85 248-306 (348)
247 cd05213 NAD_bind_Glutamyl_tRNA 20.8 1.5E+02 0.0032 24.9 4.0 61 40-102 228-302 (311)
248 COG0677 WecC UDP-N-acetyl-D-ma 20.5 1.6E+02 0.0034 26.3 4.1 63 21-88 355-421 (436)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.98 E-value=1.5e-32 Score=232.16 Aligned_cols=123 Identities=37% Similarity=0.497 Sum_probs=113.4
Q ss_pred cCCcccc-----ceeeeEEEeccccccC---CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTG---GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
.|+||+. ..|||++++||+.... ...+.+...+|++++++||||++|+|+|++|+||||++.|++||+|+++
T Consensus 150 ~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gail 229 (324)
T COG0111 150 LGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAIL 229 (324)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEE
Confidence 7888885 4789999999995554 2344667889999999999999999999999999999999999999999
Q ss_pred EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
||++||++||+++|.++|++|+|.+|+||||++||++.++|||.+|||++|
T Consensus 230 IN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~T 280 (324)
T COG0111 230 INAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILT 280 (324)
T ss_pred EECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEEC
Confidence 999999999999999999999999999999999999999999999999986
No 2
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.97 E-value=1.8e-30 Score=218.75 Aligned_cols=121 Identities=31% Similarity=0.476 Sum_probs=109.9
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
+|+||+. +.|||++++||+..... +..+...+|++++++||||++|+|+|++|+||||++.|++||+|+++||+
T Consensus 153 ~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 153 LGTIGKRVAKIAQAFGAKVVYYSTSGKNK-NEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINV 231 (311)
T ss_pred CCHHHHHHHHHHhhcCCEEEEECCCcccc-ccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEEC
Confidence 8899985 57899999998864322 22346779999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCC---Cceeec
Q psy5266 86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQL---DNCGNG 133 (180)
Q Consensus 86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~---~Nv~~g 133 (180)
+||++||+++|.++|++|++. ++||||++||++.++||+.+ |||+++
T Consensus 232 aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilT 281 (311)
T PRK08410 232 GRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLIT 281 (311)
T ss_pred CCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEEC
Confidence 999999999999999999999 99999999999889999986 899996
No 3
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.97 E-value=2.7e-31 Score=207.27 Aligned_cols=125 Identities=34% Similarity=0.455 Sum_probs=110.2
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
.|+||+. +.|||++.+|++...... +......+|+|++++||||++|+|+|++|+++||++.|++||+|+++
T Consensus 44 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~l 123 (178)
T PF02826_consen 44 YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVL 123 (178)
T ss_dssp TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEE
T ss_pred EcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEE
Confidence 7889985 578999999999888532 23357889999999999999999999999999999999999999999
Q ss_pred EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeeccc
Q psy5266 83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLL 135 (180)
Q Consensus 83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g~~ 135 (180)
||++||++||+++|.++|+++++.+++||||+.||++.++||+++||++.+++
T Consensus 124 vN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH 176 (178)
T PF02826_consen 124 VNVARGELVDEDALLDALESGKIAGAALDVFEPEPLPADSPLWDLPNVILTPH 176 (178)
T ss_dssp EESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS
T ss_pred EeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCCCCChHHcCCCEEEeCc
Confidence 99999999999999999999999999999999999998899999999999865
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.96 E-value=1.2e-29 Score=214.28 Aligned_cols=120 Identities=33% Similarity=0.459 Sum_probs=108.0
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
.|+||+. +.|||++++|++... +......+|++++++||||++|+|+|++|+||||++.|++||+|+++||+
T Consensus 156 ~G~IG~~vA~~l~~fgm~V~~~~~~~~---~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~ 232 (317)
T PRK06487 156 HGELGGAVARLAEAFGMRVLIGQLPGR---PARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINT 232 (317)
T ss_pred CCHHHHHHHHHHhhCCCEEEEECCCCC---cccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEEC
Confidence 7899985 467888888876532 12234579999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC--CCceeec
Q psy5266 86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ--LDNCGNG 133 (180)
Q Consensus 86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~--~~Nv~~g 133 (180)
+||++||+++|.++|+++++.+++||||++||++.++||++ +|||+.|
T Consensus 233 aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilT 282 (317)
T PRK06487 233 ARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVT 282 (317)
T ss_pred CCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEEC
Confidence 99999999999999999999999999999999988899995 8999997
No 5
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.96 E-value=9.4e-30 Score=215.36 Aligned_cols=123 Identities=33% Similarity=0.443 Sum_probs=110.1
Q ss_pred cCCcccc-----c-eeeeEEEeccccccCCc--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQV-----H-LIVCVLIRYHVDLTGGS--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~-----~-~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
.|+||+. + .|||++++|++...... .....+.+|++++++||+|++|+|+|++|+||||++.|++||+|+++
T Consensus 153 ~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~l 232 (323)
T PRK15409 153 MGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIF 232 (323)
T ss_pred ccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEE
Confidence 7889985 4 78888888887643211 11135679999999999999999999999999999999999999999
Q ss_pred EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
||++||++||+++|.++|+++++.+++||||++||++.++||+++|||+++
T Consensus 233 IN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilT 283 (323)
T PRK15409 233 INAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAV 283 (323)
T ss_pred EECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEc
Confidence 999999999999999999999999999999999999889999999999996
No 6
>KOG0068|consensus
Probab=99.96 E-value=5e-30 Score=213.64 Aligned_cols=159 Identities=26% Similarity=0.370 Sum_probs=130.9
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCcccee--eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVY--LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI 83 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv 83 (180)
+|+||+. ..+||+++.||+-.++.-.+-+ .+.+++|+++.||||++|+||+|+|.+|++.+.|++||+|+.+|
T Consensus 154 ~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI 233 (406)
T KOG0068|consen 154 LGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRII 233 (406)
T ss_pred cccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEE
Confidence 8999985 3689999999998876443333 78999999999999999999999999999999999999999999
Q ss_pred ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCC--CCCCCCCCceeec----ccCHHH-----------HHHHHHc
Q psy5266 84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPA--DHPLVQLDNCGNG----LLDQEA-----------LVEFLRD 146 (180)
Q Consensus 84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~--~~~l~~~~Nv~~g----~~~~~a-----------l~~~L~~ 146 (180)
|++||++||+.+|.+++++|++.++|+|||++||... ++.|.++|||+.+ .+|.|| +.+++..
T Consensus 234 N~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 234 NVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred EecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999544 8899999999985 566655 5556555
Q ss_pred cccccc-cccCCCCCCCCCCCCccc
Q psy5266 147 KKIGGA-GLDVMIPEPMPADHPLVQ 170 (180)
Q Consensus 147 g~l~ga-~ldV~~~Eplp~~~pl~~ 170 (180)
...++ +..-...|-++..+|+.-
T Consensus 314 -~~~g~Vna~~v~~~~l~~~~~~~~ 337 (406)
T KOG0068|consen 314 -NSAGSVNAPEVALESLTELKPNIV 337 (406)
T ss_pred -CccceechhhhhhhhhhccCchhH
Confidence 33232 333334445666666653
No 7
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.96 E-value=1.8e-29 Score=212.94 Aligned_cols=121 Identities=34% Similarity=0.463 Sum_probs=107.2
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
.|+||+. +.|||++++|++..... ....+.+|++++++||||++|+|+|++|+||||++.|++||+|+++||+
T Consensus 155 ~G~IG~~va~~l~~fg~~V~~~~~~~~~~--~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~ 232 (314)
T PRK06932 155 KGCLGTEVGRLAQALGMKVLYAEHKGASV--CREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINT 232 (314)
T ss_pred CCHHHHHHHHHHhcCCCEEEEECCCcccc--cccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEEC
Confidence 7889985 46788888777543211 1124679999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCC----CCCceeec
Q psy5266 86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLV----QLDNCGNG 133 (180)
Q Consensus 86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~----~~~Nv~~g 133 (180)
+||++||+++|.++|+++++.+++||||++||++.++||+ ++|||+.+
T Consensus 233 aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilT 284 (314)
T PRK06932 233 GRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLIT 284 (314)
T ss_pred CCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEEC
Confidence 9999999999999999999999999999999998899998 48999996
No 8
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.96 E-value=1.7e-29 Score=213.53 Aligned_cols=123 Identities=38% Similarity=0.553 Sum_probs=110.8
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccc--eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQ--VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI 83 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv 83 (180)
+|+|||. ++|||+++.|+++.....+. ...+.+|+|++++||+|++|||++++|+|+||++.|++||+|+++|
T Consensus 154 ~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV 233 (324)
T COG1052 154 LGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILV 233 (324)
T ss_pred CCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE
Confidence 8999996 58999999999887522212 2566679999999999999999999999999999999999999999
Q ss_pred ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCc---eeec
Q psy5266 84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDN---CGNG 133 (180)
Q Consensus 84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~N---v~~g 133 (180)
|++||++||+++|.++|++|+|.+++||||+.||.+.+++|+.++| |+.+
T Consensus 234 NtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvlt 286 (324)
T COG1052 234 NTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLT 286 (324)
T ss_pred ECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEc
Confidence 9999999999999999999999999999999999777899998877 9886
No 9
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.96 E-value=1.2e-28 Score=214.53 Aligned_cols=142 Identities=30% Similarity=0.362 Sum_probs=119.8
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
+|+||+. +.|||++++||+.............+|+|++++||+|++|+|++++|+||||++.|++||+|+++||+
T Consensus 159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~ 238 (409)
T PRK11790 159 YGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINA 238 (409)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 7889985 57899999999764322222345569999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCC----CCCCCCCCceeec----ccCH-----------HHHHHHHHc
Q psy5266 86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPA----DHPLVQLDNCGNG----LLDQ-----------EALVEFLRD 146 (180)
Q Consensus 86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~----~~~l~~~~Nv~~g----~~~~-----------~al~~~L~~ 146 (180)
+||+++|+++|.++|+++++.+++||||++||++. ++||+++|||+.+ ..+. +.+.+++++
T Consensus 239 aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 239 SRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDN 318 (409)
T ss_pred CCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999865 4699999999986 2233 336667777
Q ss_pred cccccc
Q psy5266 147 KKIGGA 152 (180)
Q Consensus 147 g~l~ga 152 (180)
|.+.+.
T Consensus 319 ~~~~~~ 324 (409)
T PRK11790 319 GSTLSA 324 (409)
T ss_pred CCcCcc
Confidence 766544
No 10
>PLN02306 hydroxypyruvate reductase
Probab=99.95 E-value=3.2e-28 Score=210.16 Aligned_cols=143 Identities=26% Similarity=0.299 Sum_probs=117.2
Q ss_pred cCCcccc------ceeeeEEEeccccccCCcc------------------ceeeccCHHHHhccCCEEEEccCCCCCCcc
Q psy5266 11 TGTPGQV------HLIVCVLIRYHVDLTGGSK------------------QVYLILVIRTRSAQSDFIFVTCALTKDTEQ 66 (180)
Q Consensus 11 ~G~iG~~------~~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~l~~~~D~v~~h~pl~~~T~g 66 (180)
+|+||+. +.|||++++||+......+ ......+|+|++++||||++|+|+|++|+|
T Consensus 173 ~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~ 252 (386)
T PLN02306 173 AGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYH 252 (386)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhh
Confidence 7889974 3789999999987542110 011235899999999999999999999999
Q ss_pred eeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec----ccCH-----
Q psy5266 67 LIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG----LLDQ----- 137 (180)
Q Consensus 67 lIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g----~~~~----- 137 (180)
|||++.|++||+|+++||++||++||+++|.++|+++++.+++||||++||+ .+++|+++|||++| ..+.
T Consensus 253 lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~~pNVilTPHiag~T~e~~~~ 331 (386)
T PLN02306 253 LINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLADMKNAVVVPHIASASKWTREG 331 (386)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhhCCCEEECCccccCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999996 45789999999996 2233
Q ss_pred ------HHHHHHHHccccccccc
Q psy5266 138 ------EALVEFLRDKKIGGAGL 154 (180)
Q Consensus 138 ------~al~~~L~~g~l~ga~l 154 (180)
+.+.++++++.+.+..-
T Consensus 332 ~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 332 MATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred HHHHHHHHHHHHHcCCCCccccc
Confidence 33555666665555543
No 11
>PLN02928 oxidoreductase family protein
Probab=99.95 E-value=3.4e-28 Score=207.64 Aligned_cols=123 Identities=28% Similarity=0.397 Sum_probs=109.7
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCc---------------cceeeccCHHHHhccCCEEEEccCCCCCCcceeCH
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---------------KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGR 70 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~ 70 (180)
.|+||+. +.|||++.+|++...... .......+|++++++||+|++|+|+|++|++|||.
T Consensus 167 ~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~ 246 (347)
T PLN02928 167 YGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVND 246 (347)
T ss_pred CCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCH
Confidence 7888885 578899999887632111 01125679999999999999999999999999999
Q ss_pred hHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 71 KQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 71 ~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
+.|++||+|+++||++||++||+++|.++|++|++.+|+||||++||++.++||+++|||+++
T Consensus 247 ~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiT 309 (347)
T PLN02928 247 EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIIT 309 (347)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEEC
Confidence 999999999999999999999999999999999999999999999999889999999999997
No 12
>PLN03139 formate dehydrogenase; Provisional
Probab=99.94 E-value=1.5e-27 Score=205.69 Aligned_cols=123 Identities=23% Similarity=0.397 Sum_probs=110.0
Q ss_pred cCCcccc-----ceeeeEEEeccccccCC--c--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGG--S--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 81 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~ 81 (180)
.|+||+. +.|||++..||+..... . .+.....++++++++||+|++|+|++++|+++||.+.|++||+|++
T Consensus 207 ~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 286 (386)
T PLN03139 207 AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVL 286 (386)
T ss_pred ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence 7888885 46889999998764321 1 1123456999999999999999999999999999999999999999
Q ss_pred EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
+||++||+++|+++|.++|++|++.+++||||++||++.++||+.+||++++
T Consensus 287 lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilT 338 (386)
T PLN03139 287 IVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMT 338 (386)
T ss_pred EEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEc
Confidence 9999999999999999999999999999999999999999999999999997
No 13
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.94 E-value=1.6e-27 Score=200.95 Aligned_cols=123 Identities=22% Similarity=0.217 Sum_probs=109.9
Q ss_pred cCCcccc-----ceeeeEEEeccccccCC--ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGG--SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI 83 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv 83 (180)
+|+||+. +.|||++.+|++..... ........+|++++++||+|++|+|++++|+++||.+.|++||+|+++|
T Consensus 144 ~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI 223 (312)
T PRK15469 144 AGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLL 223 (312)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE
Confidence 7888885 46888888888765432 1222345789999999999999999999999999999999999999999
Q ss_pred ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
|++||++||+++|.++|+++++.+++||||++||++.++||+++|||+.+
T Consensus 224 N~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~T 273 (312)
T PRK15469 224 NLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAIT 273 (312)
T ss_pred ECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEEC
Confidence 99999999999999999999999999999999999999999999999986
No 14
>PRK07574 formate dehydrogenase; Provisional
Probab=99.94 E-value=8e-28 Score=207.44 Aligned_cols=123 Identities=26% Similarity=0.380 Sum_probs=110.1
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 81 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~ 81 (180)
.|+||+. +.|||++.+||+...... .+.....+++|++++||+|++|+|++++|++|||++.|++||+|++
T Consensus 200 ~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 279 (385)
T PRK07574 200 AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY 279 (385)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence 7889985 468888888887653211 1223467999999999999999999999999999999999999999
Q ss_pred EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
+||++||.++|+++|.++|+++++.+|+||||++||++.++||+.+|||+++
T Consensus 280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilT 331 (385)
T PRK07574 280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMT 331 (385)
T ss_pred EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEEC
Confidence 9999999999999999999999999999999999999999999999999997
No 15
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.94 E-value=2.5e-27 Score=211.91 Aligned_cols=160 Identities=29% Similarity=0.437 Sum_probs=129.0
Q ss_pred cCCcccc-----ceeeeEEEeccccccCC---ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGG---SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
.|+||+. +.|||++.+||+..... ........+|+|++++||+|++|+|++++|+++||.+.|++||+|+++
T Consensus 146 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l 225 (525)
T TIGR01327 146 LGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVII 225 (525)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEE
Confidence 7888885 46888888888753321 111223458999999999999999999999999999999999999999
Q ss_pred EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec----ccCH-----------HHHHHHHHcc
Q psy5266 83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG----LLDQ-----------EALVEFLRDK 147 (180)
Q Consensus 83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g----~~~~-----------~al~~~L~~g 147 (180)
||++||+++|+++|.++|+++++.+|+||||++|| +.++||+++|||+.+ ..+. +.+.++++.+
T Consensus 226 IN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP-~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 304 (525)
T TIGR01327 226 VNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGL 304 (525)
T ss_pred EEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCC-CCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999 568999999999986 2222 4466677776
Q ss_pred ccccc-cccCCCCCCCCCCCCcccC
Q psy5266 148 KIGGA-GLDVMIPEPMPADHPLVQL 171 (180)
Q Consensus 148 ~l~ga-~ldV~~~Eplp~~~pl~~~ 171 (180)
.+.+. ......++.++...||++|
T Consensus 305 ~~~~~vn~~~~~~~~~~~~~~~~~l 329 (525)
T TIGR01327 305 PVPNAVNAPGIDADVMEKLKPYLDL 329 (525)
T ss_pred CCCceeeCCCCCchhhhhhhhHHHH
Confidence 66554 4555555656667777765
No 16
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.94 E-value=4e-27 Score=210.65 Aligned_cols=161 Identities=30% Similarity=0.437 Sum_probs=130.1
Q ss_pred cCCcccc-----ceeeeEEEeccccccCC--ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGG--SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI 83 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv 83 (180)
.|+||+. +.|||++.+||+..... .+......+++|++++||+|++|+|++++|+++||.+.|++||+|+++|
T Consensus 148 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI 227 (526)
T PRK13581 148 LGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRII 227 (526)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE
Confidence 7888885 46888888888754321 1111234499999999999999999999999999999999999999999
Q ss_pred ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec----ccCH-----------HHHHHHHHccc
Q psy5266 84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG----LLDQ-----------EALVEFLRDKK 148 (180)
Q Consensus 84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g----~~~~-----------~al~~~L~~g~ 148 (180)
|++||+++|+++|.++|+++++.+|+||||++||.+ ++||+++|||+++ ..+. +.+.++++.+.
T Consensus 228 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~ 306 (526)
T PRK13581 228 NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGP 306 (526)
T ss_pred ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999965 8999999999996 2232 33666777766
Q ss_pred cccc-cccCCCCCCCCCCCCcccCC
Q psy5266 149 IGGA-GLDVMIPEPMPADHPLVQLD 172 (180)
Q Consensus 149 l~ga-~ldV~~~Eplp~~~pl~~~~ 172 (180)
+.+. .+....++-++..+||+++.
T Consensus 307 ~~~~vn~~~~~~~~~~~~~~~~~la 331 (526)
T PRK13581 307 VPNAVNLPSITAEEAEKLKPYLDLA 331 (526)
T ss_pred cCceeeCCCCchhhhHHhHHHHHHH
Confidence 6555 45555566667777877653
No 17
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.93 E-value=1.7e-26 Score=196.24 Aligned_cols=122 Identities=34% Similarity=0.446 Sum_probs=108.3
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccc--eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQ--VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI 83 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv 83 (180)
.|+||+. +.|||++.+||+........ .....++++++++||+|++|+|++++|+++||.+.|++||+|+++|
T Consensus 158 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI 237 (333)
T PRK13243 158 FGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILV 237 (333)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 7888885 46888888888765432111 1245699999999999999999999999999999999999999999
Q ss_pred ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
|++||+++|+++|.++|++|++.+|+||||++||++ ++||+++|||+++
T Consensus 238 N~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilT 286 (333)
T PRK13243 238 NTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLA 286 (333)
T ss_pred ECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEEC
Confidence 999999999999999999999999999999999987 8999999999996
No 18
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.92 E-value=4.1e-25 Score=190.11 Aligned_cols=120 Identities=23% Similarity=0.234 Sum_probs=104.1
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCC----CcceeCHhHHhccCCCcE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAI 81 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~----T~glIg~~~i~~mk~g~~ 81 (180)
.|+||+. +.|||++++||+.+.... ....+.+|++++++||||++|+|||++ |+||||.+.|++||+|++
T Consensus 124 ~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~-~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gai 202 (378)
T PRK15438 124 VGNVGRRLQARLEALGIKTLLCDPPRADRG-DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAI 202 (378)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCcccccc-cccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcE
Confidence 7888885 478999999997654321 113567999999999999999999986 999999999999999999
Q ss_pred EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
+||++||++||+++|.++|+++++.+++||||++||. .+.+|+..+| +.|
T Consensus 203 lIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~T 252 (378)
T PRK15438 203 LINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGT 252 (378)
T ss_pred EEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EEC
Confidence 9999999999999999999999999999999999995 5677877665 443
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.91 E-value=2.3e-24 Score=181.02 Aligned_cols=118 Identities=22% Similarity=0.321 Sum_probs=104.1
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCcccee-eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEe
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVY-LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN 84 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn 84 (180)
.|+||+. +.|||++.+|+++... ++.. ...++++++++||+|++|+|++++|+++|+.+.|++||+|+++||
T Consensus 130 ~G~IG~~vA~~l~afG~~V~~~~r~~~~--~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN 207 (303)
T PRK06436 130 YGGIGRRVALLAKAFGMNIYAYTRSYVN--DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIIN 207 (303)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCcc--cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEE
Confidence 7889985 4688888888876432 1222 257999999999999999999999999999999999999999999
Q ss_pred cCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 85 TSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 85 ~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
++||+++|+++|.++|+++++.+++||||++||++.++ .+|||+.+
T Consensus 208 ~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiT 253 (303)
T PRK06436 208 VARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILS 253 (303)
T ss_pred CCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEEC
Confidence 99999999999999999999999999999999986554 68999987
No 20
>KOG0069|consensus
Probab=99.91 E-value=1.1e-25 Score=189.67 Aligned_cols=120 Identities=43% Similarity=0.611 Sum_probs=103.6
Q ss_pred cCCccccceeeeEEEeccc------cccCCccce----eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266 11 TGTPGQVHLIVCVLIRYHV------DLTGGSKQV----YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTA 80 (180)
Q Consensus 11 ~G~iG~~~~~~~~~~~~~~------~~~~~~~~~----~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~ 80 (180)
.|+|||. ++.|+.+|++ +.....+.. ..+.++++++++||+|++|||||++|+|+||++.|.+||+|+
T Consensus 170 ~G~IG~~--ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~ 247 (336)
T KOG0069|consen 170 LGRIGKA--IAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGA 247 (336)
T ss_pred CcHHHHH--HHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCe
Confidence 7999997 5555555542 222211111 246699999999999999999999999999999999999999
Q ss_pred EEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 81 ILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 81 ~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
++||++||.++|++++.++|++|++.+++||||++|| +.+++++.++||+..
T Consensus 248 vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~ 299 (336)
T KOG0069|consen 248 VLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVIL 299 (336)
T ss_pred EEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEe
Confidence 9999999999999999999999999999999999999 899999999999885
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.91 E-value=2.4e-24 Score=185.65 Aligned_cols=120 Identities=26% Similarity=0.236 Sum_probs=105.5
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCC----CCcceeCHhHHhccCCCcE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTK----DTEQLIGRKQFSLMKPTAI 81 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~----~T~glIg~~~i~~mk~g~~ 81 (180)
.|+||+. ..||+++++||+.... .+....+.+|+|++++||+|++|+|+|+ +|+||||.+.|++||+|++
T Consensus 124 ~G~IG~~va~~l~a~G~~V~~~Dp~~~~-~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gai 202 (381)
T PRK00257 124 AGHVGGRLVRVLRGLGWKVLVCDPPRQE-AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAW 202 (381)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCcccc-cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeE
Confidence 6788874 3689999999986543 2222456799999999999999999998 5999999999999999999
Q ss_pred EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
+||++||++||+++|.++|+++++.+++||||++||. .+++|+.. |++.|
T Consensus 203 lIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~T 252 (381)
T PRK00257 203 LINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIAT 252 (381)
T ss_pred EEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEc
Confidence 9999999999999999999999999999999999994 57788886 98886
No 22
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.90 E-value=2.4e-24 Score=182.95 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=105.3
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
.|+||+. ..||+++.+||++............++++++++||+|++|+|++++|.++++.+.+.+||+|+++||+
T Consensus 154 ~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 154 TGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEc
Confidence 6888885 35788888888765432211223458999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCC---------CC----CCCCCCCceeec
Q psy5266 86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLP---------AD----HPLVQLDNCGNG 133 (180)
Q Consensus 86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~---------~~----~~l~~~~Nv~~g 133 (180)
+||.++|+++|.++|++|++.+++||||++||.. .+ ++|+++|||++|
T Consensus 234 aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilT 294 (330)
T PRK12480 234 ARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVT 294 (330)
T ss_pred CCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEEC
Confidence 9999999999999999999999999999999952 11 369999999996
No 23
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.88 E-value=2.4e-22 Score=170.77 Aligned_cols=123 Identities=24% Similarity=0.289 Sum_probs=104.8
Q ss_pred cCCcccc------ceeeeEEEeccccccCCcccee-eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266 11 TGTPGQV------HLIVCVLIRYHVDLTGGSKQVY-LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI 83 (180)
Q Consensus 11 ~G~iG~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv 83 (180)
.|+||+. ..||+++.+||++......... ...++++++++||+|++|+|+++.|.++++.+.+++||+|+++|
T Consensus 154 ~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailI 233 (332)
T PRK08605 154 TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFV 233 (332)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEE
Confidence 6888874 2477888888876543222222 34589999999999999999999999999999999999999999
Q ss_pred ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC--CCCCC-----------CCCCCCceeec
Q psy5266 84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP--LPADH-----------PLVQLDNCGNG 133 (180)
Q Consensus 84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep--~~~~~-----------~l~~~~Nv~~g 133 (180)
|++||.++|+++|.++|++|++.+++||||+.|| ++.++ +|+++|||+.|
T Consensus 234 N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilT 296 (332)
T PRK08605 234 NCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILT 296 (332)
T ss_pred ECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEEC
Confidence 9999999999999999999999999999999998 34443 49999999996
No 24
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.82 E-value=6.4e-21 Score=161.44 Aligned_cols=114 Identities=32% Similarity=0.508 Sum_probs=97.4
Q ss_pred CCCCCCcceeCHhHHhc-----cCC-CcEEEecCC--CC-------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCC
Q psy5266 59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSR--GG-------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADH 122 (180)
Q Consensus 59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~R--g~-------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~ 122 (180)
-|.++|.|+||.+.|++ ++. |+.++...+ .. .....+|.+.|+++|+ ++.|.|+ ++++
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDi------v~lh~PlT~eT~ 212 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADI------LTLHLPLTPETR 212 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCE------EEEcCCCCcchh
Confidence 46689999999999996 777 888887776 22 2334569999999999 6666665 6677
Q ss_pred CCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 123 PLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 123 ~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
.|++.. |++|| .++++||+++|++|+|+||++|||++||+|+++|||++|||++|+
T Consensus 213 g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TP 281 (324)
T COG0111 213 GLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTP 281 (324)
T ss_pred cccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECC
Confidence 777633 99997 999999999999999999999999999999999999999999997
No 25
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.78 E-value=3e-20 Score=144.96 Aligned_cols=116 Identities=33% Similarity=0.490 Sum_probs=91.9
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------cCHHHHHHHHhcCCcceEEeecCCCCCCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------LDQEALVEFLRDKKIGGAGLDVMIPEPLPADH 122 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~ 122 (180)
..+.++|.|+||.+.+++ +++ |+.++...|..- +...++.++++++|++...++.+ +.+.
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt-----~~T~ 106 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLT-----PETR 106 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSS-----TTTT
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccc-----cccc
Confidence 356789999999999997 777 888888877643 12346999999999955444443 4566
Q ss_pred CCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 123 PLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 123 ~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
.+++.+ |++|| +++++||+++|++|++++|++|||++||+|+++|||++|||++|+
T Consensus 107 ~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TP 175 (178)
T PF02826_consen 107 GLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLPADSPLWDLPNVILTP 175 (178)
T ss_dssp TSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSSTTHHHHTSTTEEEES
T ss_pred eeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCCCCChHHcCCCEEEeC
Confidence 777633 89998 999999999999999999999999999999999999999999997
No 26
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.77 E-value=2.8e-19 Score=151.01 Aligned_cols=114 Identities=29% Similarity=0.480 Sum_probs=95.6
Q ss_pred CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc----cCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCCCCC
Q psy5266 59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL----LDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPLVQL 127 (180)
Q Consensus 59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~----vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l~~~ 127 (180)
.+.++|.|+||.+.|++ +|. |+.++...|... ....+|.++|+++|+ |+.+.|+ +.++.|++.
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDi------v~l~~Plt~~T~~li~~ 217 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADI------VTLHCPLTETTQNLINA 217 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCE------EEEcCCCChHHhcccCH
Confidence 57799999999999997 788 998888776432 123469999999999 5555554 456677763
Q ss_pred C------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcc----cCCcEEEcC
Q psy5266 128 D------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV----QLDNCEIRG 178 (180)
Q Consensus 128 ~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~----~~~nv~it~ 178 (180)
+ |++|| ++|++||+++|++|+|+||++|||++||+|+++||| ++|||++|+
T Consensus 218 ~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTP 285 (314)
T PRK06932 218 ETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITP 285 (314)
T ss_pred HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECC
Confidence 3 99998 999999999999999999999999999999999999 599999997
No 27
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.76 E-value=3.3e-19 Score=150.74 Aligned_cols=114 Identities=25% Similarity=0.361 Sum_probs=95.9
Q ss_pred CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC---ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCCCCCC
Q psy5266 59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG---LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPLVQLD 128 (180)
Q Consensus 59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~---~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l~~~~ 128 (180)
.+.++|.|+||.+.|++ ++. |+.++...|.. .....+|.++|+++|+ |+.+.|+ +.++.+++.+
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDi------v~l~lPlt~~T~~li~~~ 218 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDA------LTLHCPLTEHTRHLIGAR 218 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCE------EEECCCCChHHhcCcCHH
Confidence 57899999999999986 777 88888776642 2334579999999999 5556665 5567777643
Q ss_pred ------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCccc--CCcEEEcC
Q psy5266 129 ------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQ--LDNCEIRG 178 (180)
Q Consensus 129 ------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~--~~nv~it~ 178 (180)
|++|| +++++||+++|++|+|+||++|||++||+|+++|||+ +|||++|+
T Consensus 219 ~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTP 283 (317)
T PRK06487 219 ELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTP 283 (317)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECC
Confidence 99998 9999999999999999999999999999999999995 89999997
No 28
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.76 E-value=5.2e-19 Score=149.20 Aligned_cols=114 Identities=28% Similarity=0.464 Sum_probs=95.5
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC-----ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG-----LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPLV 125 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~-----~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l~ 125 (180)
..|.++|.|+||.+.|++ ++. |+.++...|.. .+...+|+++|+++|+ |+.+.|+ ++++.|+
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDv------v~lh~Plt~~T~~li 214 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDI------ISIHAPLNEKTKNLI 214 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCE------EEEeCCCCchhhccc
Confidence 357899999999999987 777 88888877642 1234479999999999 4455554 5567777
Q ss_pred CCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccC---CcEEEcC
Q psy5266 126 QLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL---DNCEIRG 178 (180)
Q Consensus 126 ~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~---~nv~it~ 178 (180)
+.+ |++|| ++|++||+++|++|+|+ |++|||++||+|+++|||++ |||++|+
T Consensus 215 ~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTP 282 (311)
T PRK08410 215 AYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITP 282 (311)
T ss_pred CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECC
Confidence 643 99998 99999999999999999 99999999999999999997 8999997
No 29
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.75 E-value=8.1e-19 Score=148.72 Aligned_cols=115 Identities=27% Similarity=0.418 Sum_probs=94.2
Q ss_pred cCCCCCCcceeCHhHHhc-----cC-C-CcEEEecCCCCc--------cCHHHHHHHHhcCCcceEEeecCCCCCC-CCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MK-P-TAILINTSRGGL--------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PAD 121 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk-~-g~~lvn~~Rg~~--------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~ 121 (180)
..|.++|.|+||.+.|++ ++ . |+.++...|..- +...++.++++++|+ |+.+.|+ +.+
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDv------v~lh~plt~~T 214 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDF------VCIILPLTDET 214 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCE------EEEeCCCChHH
Confidence 357899999999999996 76 6 887776555311 122368999999999 5555554 456
Q ss_pred CCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 122 HPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 122 ~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
+.|++.+ |++|| +++++||+++|++|+|+||++|||++||+|.++|||++|||++|+
T Consensus 215 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTP 284 (323)
T PRK15409 215 HHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVP 284 (323)
T ss_pred hhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcC
Confidence 6666632 99998 999999999999999999999999999999999999999999997
No 30
>PLN02928 oxidoreductase family protein
Probab=99.74 E-value=9.9e-19 Score=149.50 Aligned_cols=116 Identities=25% Similarity=0.363 Sum_probs=94.7
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------------------cCHHHHHHHHhcCCcceEEe
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------------------LDQEALVEFLRDKKIGGAGL 110 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------------------vd~~al~~~L~~~~i~~~~l 110 (180)
..+.++|.|+||.+.+++ ++. |+.++...|..- ....+|.++++++|++...+
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence 357799999999999986 777 888887766310 13347899999999954444
Q ss_pred ecCCCCCCCCCCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEc
Q psy5266 111 DVMIPEPLPADHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIR 177 (180)
Q Consensus 111 Dv~~~ep~~~~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it 177 (180)
+.+ +.++.+++.. |++|| +++++||+++|++|+|+||++|||++||+|+++|||++|||++|
T Consensus 235 Plt-----~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiT 309 (347)
T PLN02928 235 TLT-----KETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIIT 309 (347)
T ss_pred CCC-----hHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEEC
Confidence 443 4456666532 99998 99999999999999999999999999999999999999999999
Q ss_pred C
Q psy5266 178 G 178 (180)
Q Consensus 178 ~ 178 (180)
+
T Consensus 310 P 310 (347)
T PLN02928 310 P 310 (347)
T ss_pred C
Confidence 7
No 31
>PRK07574 formate dehydrogenase; Provisional
Probab=99.70 E-value=2.5e-18 Score=148.54 Aligned_cols=115 Identities=28% Similarity=0.432 Sum_probs=93.2
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc----------cCHHHHHHHHhcCCcceEEeecCCCCCC-CC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL----------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PA 120 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~----------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~ 120 (180)
..+.++|.|+||.+.+++ +++ |+.++...|... .-..++.++++++|+ |+.+.|+ +.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDv------V~l~lPlt~~ 261 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDV------VTIHCPLHPE 261 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCE------EEEcCCCCHH
Confidence 457899999999999986 777 888887776531 112468899999999 5555554 33
Q ss_pred CCCCCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 121 DHPLVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 121 ~~~l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
++.+++. + |++|| +++++||+++|++|+|+||++|||++||+|+++|||++|||++|+
T Consensus 262 T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTP 332 (385)
T PRK07574 262 TEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTP 332 (385)
T ss_pred HHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECC
Confidence 4445442 2 88998 999999999999999999999999999999999999999999996
No 32
>PLN03139 formate dehydrogenase; Provisional
Probab=99.70 E-value=3.7e-18 Score=147.55 Aligned_cols=115 Identities=25% Similarity=0.373 Sum_probs=92.3
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc----------cCHHHHHHHHhcCCcceEEeecCCCCCC-CC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL----------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PA 120 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~----------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~ 120 (180)
..|.++|.|+||.+.+++ |++ |+.++...|... ...+++.++++++|++.. +.|+ +.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l------~lPlt~~ 268 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVI------NTPLTEK 268 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEE------eCCCCHH
Confidence 457899999999999986 666 888877766421 112368999999999444 5554 33
Q ss_pred CCCCCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 121 DHPLVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 121 ~~~l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
+..+++. + |+.|| +++++||+++|++|+|+||++|||++||+|+++|||++|||++|+
T Consensus 269 T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTP 339 (386)
T PLN03139 269 TRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTP 339 (386)
T ss_pred HHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcc
Confidence 4445442 2 88897 999999999999999999999999999999999999999999997
No 33
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.69 E-value=6.7e-18 Score=142.51 Aligned_cols=115 Identities=25% Similarity=0.304 Sum_probs=91.0
Q ss_pred CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC--------ccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCC
Q psy5266 59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG--------LLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPL 124 (180)
Q Consensus 59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~--------~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l 124 (180)
.+.++|.|+||.+.+++ +++ |+.++...|.. .....++.++++++|++...++.+ +.++.+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt-----~~T~~l 207 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNT-----PETVGI 207 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCC-----HHHHHH
Confidence 46789999999999985 776 77776555421 112457999999999955544443 233444
Q ss_pred CC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 125 VQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 125 ~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
++ ++ |++|| +++++||+++|++|+|+||++|||++||+|.++|||++|||++|+
T Consensus 208 i~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TP 274 (312)
T PRK15469 208 INQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITP 274 (312)
T ss_pred hHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECC
Confidence 43 22 89998 999999999999999999999999999999999999999999997
No 34
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.67 E-value=2e-17 Score=144.17 Aligned_cols=115 Identities=22% Similarity=0.350 Sum_probs=94.1
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPL 124 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l 124 (180)
..|.++|.|+||.+.+++ ++. |+.++...|.. .....++.++++++|+ |+.+.|+ +.++.+
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDi------Vslh~Plt~~T~~l 220 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDV------VSLHVPETPSTKNM 220 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCE------EEEcCCCChHHhhc
Confidence 457899999999999997 667 88888776532 1122379999999999 5556665 446666
Q ss_pred CCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCC----CCCcccCCcEEEcC
Q psy5266 125 VQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPA----DHPLVQLDNCEIRG 178 (180)
Q Consensus 125 ~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~----~~pl~~~~nv~it~ 178 (180)
++.+ |++|| ++|++||.++|++|+|+||++|||++||+|. ++|||++|||++|+
T Consensus 221 i~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTP 291 (409)
T PRK11790 221 IGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTP 291 (409)
T ss_pred cCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECC
Confidence 6532 88897 9999999999999999999999999999887 47999999999997
No 35
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.66 E-value=4.6e-17 Score=138.55 Aligned_cols=115 Identities=25% Similarity=0.330 Sum_probs=90.8
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cCHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LDQEALVEFLRDKKIGGAGLDVMIPEPLPADHP 123 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~ 123 (180)
..|.++|.|+||.+.+++ ++. |+.++...|..- +...++.++++++|++...++.+ +.+..
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t-----~~T~~ 220 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLT-----KETYH 220 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCC-----hHHhh
Confidence 357899999999999996 566 777776665421 11235888999999955555444 33444
Q ss_pred CCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 124 LVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 124 l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
+++. + |+.|| +++++||.++|++|+|+||++|||++||+| ++|||++|||++|+
T Consensus 221 ~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTP 287 (333)
T PRK13243 221 MINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAP 287 (333)
T ss_pred ccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECC
Confidence 5542 2 88887 999999999999999999999999999987 89999999999997
No 36
>PLN02306 hydroxypyruvate reductase
Probab=99.64 E-value=1.2e-16 Score=138.21 Aligned_cols=115 Identities=24% Similarity=0.268 Sum_probs=91.1
Q ss_pred cCCCCCCcceeCHhHHhc-----cC-C-CcEEEecCCCC---c---------------------cCHHHHHHHHhcCCcc
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MK-P-TAILINTSRGG---L---------------------LDQEALVEFLRDKKIG 106 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk-~-g~~lvn~~Rg~---~---------------------vd~~al~~~L~~~~i~ 106 (180)
..+.++|.|+||.+.|++ ++ . |+.++...|.. . ....+|.++|+++|++
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 357899999999999996 43 6 88888665431 0 0023789999999994
Q ss_pred eEEeecCCCCCCCCCCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCc
Q psy5266 107 GAGLDVMIPEPLPADHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 173 (180)
Q Consensus 107 ~~~lDv~~~ep~~~~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~n 173 (180)
...++.+ +.++.|++.+ |++|| +++++||+++|++|+++||++|||++||++ ++|||++||
T Consensus 241 ~lh~Plt-----~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pN 314 (386)
T PLN02306 241 SLHPVLD-----KTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKN 314 (386)
T ss_pred EEeCCCC-----hhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCC
Confidence 4444443 4566666633 99998 999999999999999999999999999975 589999999
Q ss_pred EEEcC
Q psy5266 174 CEIRG 178 (180)
Q Consensus 174 v~it~ 178 (180)
|++|+
T Consensus 315 VilTP 319 (386)
T PLN02306 315 AVVVP 319 (386)
T ss_pred EEECC
Confidence 99997
No 37
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.64 E-value=1.1e-16 Score=135.68 Aligned_cols=131 Identities=30% Similarity=0.441 Sum_probs=104.7
Q ss_pred cCHHHHhccCCEEEE-------ccCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cCHHHHHHHH
Q psy5266 42 LVIRTRSAQSDFIFV-------TCALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LDQEALVEFL 100 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~-------h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd~~al~~~L 100 (180)
..-++..++.++-.. ...+.++|.|+||.+.|++ +|. |+.++...|... ...-++.+++
T Consensus 119 ~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell 198 (324)
T COG1052 119 HEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELL 198 (324)
T ss_pred HHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHH
Confidence 344455555554433 2345689999999999997 788 888888877642 1222399999
Q ss_pred hcCCcceEEeecCCCCCC-CCCCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCC
Q psy5266 101 RDKKIGGAGLDVMIPEPL-PADHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADH 166 (180)
Q Consensus 101 ~~~~i~~~~lDv~~~ep~-~~~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~ 166 (180)
+++|+ ++.+.|+ ++++.|++.+ |++|| ++|++|++++|++|+|++|++|||+.||.+.++
T Consensus 199 ~~sDi------i~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~ 272 (324)
T COG1052 199 AESDI------ISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDH 272 (324)
T ss_pred HhCCE------EEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCCh
Confidence 99999 6667776 6677888743 99998 999999999999999999999999999988899
Q ss_pred CcccCCc---EEEcC
Q psy5266 167 PLVQLDN---CEIRG 178 (180)
Q Consensus 167 pl~~~~n---v~it~ 178 (180)
||++++| |++|+
T Consensus 273 ~l~~l~~~~~vvltP 287 (324)
T COG1052 273 PLLRLDNFPNVVLTP 287 (324)
T ss_pred hHhhccCCCCEEEcc
Confidence 9999999 99997
No 38
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.60 E-value=3.1e-16 Score=140.68 Aligned_cols=115 Identities=28% Similarity=0.370 Sum_probs=91.1
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cCHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LDQEALVEFLRDKKIGGAGLDVMIPEPLPADHP 123 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~ 123 (180)
..|.++|.|+||.+.+++ +++ |+.++...|..- +...++.++++++|+....++.+ +.+..
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t-----~~t~~ 210 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLT-----PETRG 210 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCC-----hHhhc
Confidence 457899999999999986 777 888887766310 11126889999999944444443 34555
Q ss_pred CCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 124 LVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 124 l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
+++. + |+.|| +++++||+++|++|+|+||++|||++||++ ++|||++|||++|+
T Consensus 211 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTP 277 (526)
T PRK13581 211 LIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTP 277 (526)
T ss_pred CcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcC
Confidence 6642 1 88887 999999999999999999999999999976 89999999999997
No 39
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.60 E-value=5.6e-16 Score=139.01 Aligned_cols=115 Identities=27% Similarity=0.376 Sum_probs=90.6
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cC-HHHHHHHHhcCCcceEEeecCCCCCCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LD-QEALVEFLRDKKIGGAGLDVMIPEPLPADH 122 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd-~~al~~~L~~~~i~~~~lDv~~~ep~~~~~ 122 (180)
..|.++|.|+||.+.+++ +++ |+.++...|..- +. .+++.++++++|+....++.+ +.+.
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt-----~~T~ 208 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLT-----PETR 208 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCC-----hhhc
Confidence 468899999999999886 676 888877765310 11 135899999999954444433 3455
Q ss_pred CCCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 123 PLVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 123 ~l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
.+++. + |++|| +++++||+++|++|+|+||++|||++|| |+++|||++|||++|+
T Consensus 209 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP-~~~~pL~~~~nvi~TP 276 (525)
T TIGR01327 209 GLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLFDLDNVIATP 276 (525)
T ss_pred cCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCC-CCCChhhcCCCeEECC
Confidence 56542 1 88887 9999999999999999999999999999 5589999999999997
No 40
>KOG0068|consensus
Probab=99.56 E-value=1e-15 Score=128.30 Aligned_cols=118 Identities=25% Similarity=0.357 Sum_probs=98.3
Q ss_pred EEccCCCCCCcceeCHhHHhc-----cCC-CcEEEecC------CCC--ccCHHHHHHHHhcCCcceEEeecCCCCCC-C
Q psy5266 55 FVTCALTKDTEQLIGRKQFSL-----MKP-TAILINTS------RGG--LLDQEALVEFLRDKKIGGAGLDVMIPEPL-P 119 (180)
Q Consensus 55 ~~h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~------Rg~--~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~ 119 (180)
.....+.++|.|+||.+++++ ||. |..+|..- +++ =|..-.+++++..+|+ ++.|.|+ |
T Consensus 139 ~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADF------itlH~PLtP 212 (406)
T KOG0068|consen 139 YLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADF------ITLHVPLTP 212 (406)
T ss_pred eeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCE------EEEccCCCc
Confidence 455678899999999999986 776 66666441 222 2455678999999999 8889997 7
Q ss_pred CCCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCC--CCCcccCCcEEEcC
Q psy5266 120 ADHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPA--DHPLVQLDNCEIRG 178 (180)
Q Consensus 120 ~~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~--~~pl~~~~nv~it~ 178 (180)
.++.+++.+ |+.|| ++|+.||+++|++|+++||++|||..||... ++.|.++|||++|+
T Consensus 213 ~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~Tp 286 (406)
T KOG0068|consen 213 STEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTP 286 (406)
T ss_pred chhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecC
Confidence 788888755 99996 9999999999999999999999999999554 89999999999997
No 41
>KOG0069|consensus
Probab=99.55 E-value=2.3e-15 Score=127.28 Aligned_cols=112 Identities=35% Similarity=0.569 Sum_probs=93.1
Q ss_pred CCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc-cCHH--------HHHHHHhcCCcceEEeecCCCCCCCCCCCCC
Q psy5266 61 TKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL-LDQE--------ALVEFLRDKKIGGAGLDVMIPEPLPADHPLV 125 (180)
Q Consensus 61 ~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~-vd~~--------al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~ 125 (180)
..+|.|++|.+.|++ |++ |+.+...+|-.. -++. ++++.+.++|+...+++.+ +.++.++
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt-----~~T~~li 235 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLT-----KETRHLI 235 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCC-----HHHHHHh
Confidence 478999999999986 888 877888888543 2222 7999999999966655555 4455566
Q ss_pred CCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 126 QLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 126 ~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
+.+ |++|| +++++++.++|++|+++++++|||++|| +.++||++++||++|+
T Consensus 236 Nk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~P 300 (336)
T KOG0069|consen 236 NKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILP 300 (336)
T ss_pred hHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEec
Confidence 533 99998 9999999999999999999999999999 9999999999999986
No 42
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.50 E-value=1.4e-14 Score=121.95 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=88.9
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---cC--HHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---LD--QEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ 126 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---vd--~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~ 126 (180)
..|.++|.|+||.+.+++ +|. |+.++...|... +. ..++.++++++|+....++.+ ++++.+++
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t-----~~T~~li~ 192 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLT-----DETRGMIN 192 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCC-----chhhcCcC
Confidence 357899999999999986 777 888877776321 11 246899999999944444433 34555555
Q ss_pred C------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 127 L------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 127 ~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
. + |+.|| +++++||.++|++|+++++++|||++||+|+++ .+|||++|+
T Consensus 193 ~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTP 254 (303)
T PRK06436 193 SKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSP 254 (303)
T ss_pred HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECC
Confidence 2 2 88887 999999999999999999999999999998876 689999997
No 43
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.50 E-value=3.1e-15 Score=127.20 Aligned_cols=121 Identities=15% Similarity=0.158 Sum_probs=86.9
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc-----cC-HHHHHHHHhcCCcceEEeecCCCCCCCCCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL-----LD-QEALVEFLRDKKIGGAGLDVMIPEPLPADHPLV 125 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~-----vd-~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~ 125 (180)
..+.++|.|+||.+.+++ ++. |..++...|..- +. ..++.++++++|++..+++....+-...+..++
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHH
Confidence 357788999999999996 555 777776655321 11 125888999999966665554321100011111
Q ss_pred -CC------Cceeec-ccCHHHHHHHHHccccccccccCCCCCCCC-------------CCCCcccCCcEEEcC
Q psy5266 126 -QL------DNCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMP-------------ADHPLVQLDNCEIRG 178 (180)
Q Consensus 126 -~~------~Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp-------------~~~pl~~~~nv~it~ 178 (180)
.+ -|++|| .++++||+++|++|+|+||++|||++||++ ..+|||++|||++|+
T Consensus 222 ~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 295 (330)
T PRK12480 222 DHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP 295 (330)
T ss_pred hcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence 11 288887 999999999999999999999999999962 224799999999997
No 44
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.48 E-value=3.8e-14 Score=122.32 Aligned_cols=118 Identities=18% Similarity=0.134 Sum_probs=89.4
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC-----ccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG-----LLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ 126 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~-----~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~ 126 (180)
..+.++|.|+||.+.+++ ++. |+.++...+.. .....+|.++++++|++...++.+...+ .++..|++
T Consensus 112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~-~~T~~li~ 190 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGP-YKTLHLAD 190 (378)
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcc-cccccccC
Confidence 356789999999999986 666 77776654421 1223469999999999665555554322 23566665
Q ss_pred CC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 127 LD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 127 ~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
.+ |+.|| ++|++||+++|++|++.+|++|||++||+ +++|||..++ ++|+
T Consensus 191 ~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TP 253 (378)
T PRK15438 191 EKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTP 253 (378)
T ss_pred HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECC
Confidence 32 88998 99999999999999999999999999995 5688988765 8886
No 45
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.45 E-value=7.4e-14 Score=120.72 Aligned_cols=118 Identities=20% Similarity=0.147 Sum_probs=89.7
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCC-----CccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRG-----GLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ 126 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg-----~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~ 126 (180)
..+.++|.|+||.+.+++ ++. |..++...+. ......++.++++++|++...++.+...+ ..+..|++
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~-~~T~~li~ 190 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGE-HPTRHLLD 190 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCcc-ccccccCC
Confidence 456789999999999986 555 7666655432 12334468999999999555555543211 13566665
Q ss_pred CC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266 127 LD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG 178 (180)
Q Consensus 127 ~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~ 178 (180)
.+ |+.|| +++++||.++|++|++.+|++|||++||+ +++|||+. ||++|+
T Consensus 191 ~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TP 253 (381)
T PRK00257 191 EAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATP 253 (381)
T ss_pred HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcC
Confidence 32 88887 99999999999999999999999999995 57899996 999997
No 46
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.44 E-value=8.6e-14 Score=118.46 Aligned_cols=115 Identities=23% Similarity=0.331 Sum_probs=88.0
Q ss_pred CCCCCCcceeCHhHHhc-----c-CC-CcEEEecCCCCc------cCH-HHHHHHHhcCCcceEEeecCCCCCCCCCCCC
Q psy5266 59 ALTKDTEQLIGRKQFSL-----M-KP-TAILINTSRGGL------LDQ-EALVEFLRDKKIGGAGLDVMIPEPLPADHPL 124 (180)
Q Consensus 59 pl~~~T~glIg~~~i~~-----m-k~-g~~lvn~~Rg~~------vd~-~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l 124 (180)
.|.++|.|+||.+.+++ + +. |+.++...|..- +.. .++.++++++|+...+++....+ ..+
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t-----~~l 217 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYN-----HYL 217 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcch-----hhh
Confidence 57789999999999886 5 65 777776665321 111 36889999999976666555333 333
Q ss_pred CC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCC--CCCCC-----------CcccCCcEEEcC
Q psy5266 125 VQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEP--MPADH-----------PLVQLDNCEIRG 178 (180)
Q Consensus 125 ~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Ep--lp~~~-----------pl~~~~nv~it~ 178 (180)
++ ++ |+.|| .++++++.++|++|+|+||++|||++|| +|.++ |||++|||++|+
T Consensus 218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 297 (332)
T PRK08605 218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP 297 (332)
T ss_pred cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence 32 11 77887 9999999999999999999999999998 46665 499999999997
No 47
>KOG0067|consensus
Probab=99.14 E-value=5.3e-11 Score=101.15 Aligned_cols=117 Identities=29% Similarity=0.395 Sum_probs=92.0
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCccce---eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQV---YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
-|++||. ..||..++.||+......+.. ....+|++++.++|.+|+|+-+++.++++|+.-.+.+|++|+.+
T Consensus 186 ~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGafl 265 (435)
T KOG0067|consen 186 FGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFL 265 (435)
T ss_pred cccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceE
Confidence 5666765 125566666676666433332 45668999999999999999999999999999999999999999
Q ss_pred EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266 83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG 133 (180)
Q Consensus 83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g 133 (180)
+|++||.++|+++|.++|++|++.+++=.- ....++.+.||.+..
T Consensus 266 vnta~gglvdekaLaqaLk~G~i~~aa~~~------~~~~~l~d~pn~ic~ 310 (435)
T KOG0067|consen 266 VNTARGGLVDEKALAQALKSGRIRGAAPRS------FKQGPLKDAPNLICT 310 (435)
T ss_pred eeecccccCChHHHHhhhccCceecccCcc------cccccccCCCCCCCC
Confidence 999999999999999999999998777111 223456666666664
No 48
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.64 E-value=5.7e-08 Score=86.04 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=73.3
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
.|+||+. +.||+++..++.+..... ..-+...+++++++.||+|+.|. .|.++|+.+.|++||+|+++
T Consensus 262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiL 337 (476)
T PTZ00075 262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIV 337 (476)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEE
Confidence 5777775 467888888865543210 11234568999999999999984 58899999999999999999
Q ss_pred EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCC
Q psy5266 83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPL 118 (180)
Q Consensus 83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~ 118 (180)
+|++|+ |.+.+.+.|+++. ++|+++.+|.
T Consensus 338 INvGr~---d~Ei~i~aL~~~~----~vdv~evep~ 366 (476)
T PTZ00075 338 GNIGHF---DNEIQVAELEAYP----GIEIVEIKPQ 366 (476)
T ss_pred EEcCCC---chHHhHHHHHhcC----CceeecccCC
Confidence 999999 5666666666543 5678888885
No 49
>PLN02494 adenosylhomocysteinase
Probab=98.64 E-value=2.5e-08 Score=88.20 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=80.8
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
.|.||+. +.||++++.++.+..... ...+...+++++++.+|+|+. +..|.++|+...|.+||+|+++
T Consensus 262 yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~~e~L~~MK~GAiL 337 (477)
T PLN02494 262 YGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIMVDHMRKMKNNAIV 337 (477)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchHHHHHhcCCCCCEE
Confidence 6778875 467888888876654211 111344589999999999997 5578899999999999999999
Q ss_pred EecCC-CCccCHHHHHHH--HhcCCcceEEeecCCCC
Q psy5266 83 INTSR-GGLLDQEALVEF--LRDKKIGGAGLDVMIPE 116 (180)
Q Consensus 83 vn~~R-g~~vd~~al~~~--L~~~~i~~~~lDv~~~e 116 (180)
+|++| +..||+.+|.++ ++...+. ..+|++..+
T Consensus 338 iNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 338 CNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred EEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 99999 579999999998 8888886 889988654
No 50
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.19 E-value=1.6e-06 Score=75.76 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=78.0
Q ss_pred cCCcccc-----ceeeeEEEeccccccC----CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTG----GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 81 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~ 81 (180)
.|.||+. +.+|+++..++.+... ..++ +...++++.++.+|+++... .+.++|+...+..||+|++
T Consensus 203 ~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-~~v~~leeal~~aDVVItaT----G~~~vI~~~~~~~mK~Gai 277 (406)
T TIGR00936 203 YGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-FRVMTMEEAAKIGDIFITAT----GNKDVIRGEHFENMKDGAI 277 (406)
T ss_pred CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-CEeCCHHHHHhcCCEEEECC----CCHHHHHHHHHhcCCCCcE
Confidence 5677765 3578888888655432 1111 34567899999999997643 4789999999999999999
Q ss_pred EEecCCCCc-cCHHHHHHHHhcCCcceEEeecCC
Q psy5266 82 LINTSRGGL-LDQEALVEFLRDKKIGGAGLDVMI 114 (180)
Q Consensus 82 lvn~~Rg~~-vd~~al~~~L~~~~i~~~~lDv~~ 114 (180)
++|++|+.+ ||.++|.+++.+.......+|.|.
T Consensus 278 liN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~ 311 (406)
T TIGR00936 278 VANIGHFDVEIDVKALEELAVEKRNVRPQVDEYI 311 (406)
T ss_pred EEEECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence 999999998 999999998888777788888764
No 51
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.11 E-value=1.5e-06 Score=73.75 Aligned_cols=76 Identities=8% Similarity=0.045 Sum_probs=56.4
Q ss_pred cCCccccc-----eeeeEEEeccccccCCc--cc-eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGGS--KQ-VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~--~~-~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
.|+||+.| .+|+++..|+....... .. -....++++++++||+|++|+|. ++|.++++.+.+..||+|+++
T Consensus 24 ~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~eil~~MK~GaiL 102 (335)
T PRK13403 24 YGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKAEVEENLREGQML 102 (335)
T ss_pred EcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHHHHHhcCCCCCEE
Confidence 68888863 57888878764322111 11 12456999999999999999997 678999999999999999877
Q ss_pred EecCCC
Q psy5266 83 INTSRG 88 (180)
Q Consensus 83 vn~~Rg 88 (180)
+. ++|
T Consensus 103 ~f-~hg 107 (335)
T PRK13403 103 LF-SHG 107 (335)
T ss_pred EE-CCC
Confidence 53 344
No 52
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.31 E-value=0.00016 Score=60.62 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=56.5
Q ss_pred cCCcccc-----ceeeeEEEeccccccCC------ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCC
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGG------SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPT 79 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g 79 (180)
.|+||+. +.+|+++..++++.... ........+++++++++|+|+.|+|+. +++.+.+++||++
T Consensus 159 ~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~ 233 (287)
T TIGR02853 159 FGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKH 233 (287)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCC
Confidence 6788885 34677777776654321 011224557889999999999999974 7889999999999
Q ss_pred cEEEecCCC-CccCH
Q psy5266 80 AILINTSRG-GLLDQ 93 (180)
Q Consensus 80 ~~lvn~~Rg-~~vd~ 93 (180)
+++||++-. .-.|.
T Consensus 234 aliIDlas~Pg~tdf 248 (287)
T TIGR02853 234 AVIIDLASKPGGTDF 248 (287)
T ss_pred eEEEEeCcCCCCCCH
Confidence 999999764 33444
No 53
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.17 E-value=0.00016 Score=60.21 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=71.4
Q ss_pred cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee-C-HhHHhccCCC
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI-G-RKQFSLMKPT 79 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI-g-~~~i~~mk~g 79 (180)
.|.+|+.. -.|..+..||++..... .+.....+.++++++||+|++++|..+....++ + .+.+..++++
T Consensus 7 ~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g 86 (291)
T TIGR01505 7 LGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPG 86 (291)
T ss_pred ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCC
Confidence 46777641 12456677776643211 122345688999999999999999876666554 3 3456778999
Q ss_pred cEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266 80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM 113 (180)
Q Consensus 80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~ 113 (180)
.+++|+++....+...+.+.+++..+..+.-+++
T Consensus 87 ~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~ 120 (291)
T TIGR01505 87 KTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS 120 (291)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCC
Confidence 9999999988777788999888766554444444
No 54
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.15 E-value=0.00045 Score=57.51 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=72.7
Q ss_pred cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCCC
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKPT 79 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~g 79 (180)
+|.+|+.+ -.|..+..||++..... .+.....++++++++||+|++++|-......++. .+.+..+++|
T Consensus 10 ~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g 89 (296)
T PRK11559 10 LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPG 89 (296)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCC
Confidence 56777651 12456677877653211 1223456899999999999999998777666653 2356678999
Q ss_pred cEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCC
Q psy5266 80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIP 115 (180)
Q Consensus 80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ 115 (180)
.++++++........++.+.+++..+.++-.+|+-.
T Consensus 90 ~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~ 125 (296)
T PRK11559 90 TVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGG 125 (296)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCC
Confidence 999999998877777888888876665544455533
No 55
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.06 E-value=0.00063 Score=59.99 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=63.6
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCcc---ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGSK---QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
.|.||+. ..+|+++..+|.+...... .-+...+++++++.+|+|+.+. .+.++|+...+..||+|+++
T Consensus 220 ~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~Gail 295 (425)
T PRK05476 220 YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAIL 295 (425)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEE
Confidence 5777774 3567888888766543111 1124568999999999998764 46789999999999999999
Q ss_pred EecCCCCc-cCHHHHHHH
Q psy5266 83 INTSRGGL-LDQEALVEF 99 (180)
Q Consensus 83 vn~~Rg~~-vd~~al~~~ 99 (180)
+|+++... ++.++|.+.
T Consensus 296 iNvG~~d~Eid~~~L~~~ 313 (425)
T PRK05476 296 ANIGHFDNEIDVAALEEL 313 (425)
T ss_pred EEcCCCCCccChHHHhhc
Confidence 99999764 788877653
No 56
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.73 E-value=0.00047 Score=61.09 Aligned_cols=75 Identities=17% Similarity=0.090 Sum_probs=58.4
Q ss_pred cCCccccceeeeEEEeccccc-----------cCCcc---ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhcc
Q psy5266 11 TGTPGQVHLIVCVLIRYHVDL-----------TGGSK---QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLM 76 (180)
Q Consensus 11 ~G~iG~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~m 76 (180)
+|++|+.|.++++..+.+..+ ..+.. .-+...+++|.+++||+|.+.+|.+ . .+.+..+.+..|
T Consensus 44 yGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~L 121 (487)
T PRK05225 44 CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-Q-HSDVVRAVQPLM 121 (487)
T ss_pred cCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH-H-HHHHHHHHHhhC
Confidence 799999999999988876651 11111 2246678999999999999999999 4 888889999999
Q ss_pred CCCcEEEecCCC
Q psy5266 77 KPTAILINTSRG 88 (180)
Q Consensus 77 k~g~~lvn~~Rg 88 (180)
|+|+.+. .++|
T Consensus 122 K~Ga~L~-fsHG 132 (487)
T PRK05225 122 KQGAALG-YSHG 132 (487)
T ss_pred CCCCEEE-ecCC
Confidence 9997774 3444
No 57
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.72 E-value=0.0012 Score=50.80 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=55.1
Q ss_pred CCcccc-----ceeeeEEEeccccccCCccc---eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266 12 GTPGQV-----HLIVCVLIRYHVDLTGGSKQ---VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI 83 (180)
Q Consensus 12 G~iG~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv 83 (180)
|.+|+. +.+|+++..++.+.....+. -++..++++.++++|+++... -...+|..+.|.+||+|+++.
T Consensus 32 G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaT----G~~~vi~~e~~~~mkdgail~ 107 (162)
T PF00670_consen 32 GKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTAT----GNKDVITGEHFRQMKDGAILA 107 (162)
T ss_dssp SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-S----SSSSSB-HHHHHHS-TTEEEE
T ss_pred CcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECC----CCccccCHHHHHHhcCCeEEe
Confidence 566664 35677777777766542221 245678999999999988773 346889999999999999999
Q ss_pred ecCCC-CccCHHHHHHH
Q psy5266 84 NTSRG-GLLDQEALVEF 99 (180)
Q Consensus 84 n~~Rg-~~vd~~al~~~ 99 (180)
|++.. .-+|.+.|.+.
T Consensus 108 n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 108 NAGHFDVEIDVDALEAN 124 (162)
T ss_dssp ESSSSTTSBTHHHHHTC
T ss_pred ccCcCceeEeecccccc
Confidence 99874 34777766654
No 58
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.30 E-value=0.0022 Score=53.70 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=72.4
Q ss_pred cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQFSLMKP 78 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i~~mk~ 78 (180)
.|++|+.+ -.+..+..||++..... .+.....+.+++.++ +|+|++++|-.+.+..++ .+.+..+++
T Consensus 8 lG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i~~~l~~ 86 (299)
T PRK12490 8 LGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDLYPLLSP 86 (299)
T ss_pred ccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHHhccCCC
Confidence 46677641 12345667776643211 123356689999876 699999999776777777 356667889
Q ss_pred CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266 79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM 113 (180)
Q Consensus 79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~ 113 (180)
|.++|+++.....+..++.+.+++..+..+-.+|+
T Consensus 87 g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 87 GDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCC
Confidence 99999999999888889999888877765554555
No 59
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.98 E-value=0.01 Score=49.67 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=73.7
Q ss_pred cCCccccc---e--eeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCCC
Q psy5266 11 TGTPGQVH---L--IVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKPT 79 (180)
Q Consensus 11 ~G~iG~~~---~--~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~g 79 (180)
.|.+|... + -|..+..||++..... .+.....+..+++++||+|++++|-.......+. .+.+..+++|
T Consensus 9 lG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g 88 (296)
T PRK15461 9 LGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRD 88 (296)
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCC
Confidence 46666641 0 1346777877654311 1223466889999999999999997765555543 2345668889
Q ss_pred cEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCC
Q psy5266 80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIP 115 (180)
Q Consensus 80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ 115 (180)
.++|+++.........+.+.+++..+...-.+|+-.
T Consensus 89 ~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~ 124 (296)
T PRK15461 89 ALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRT 124 (296)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCC
Confidence 999999999988888999999888876665556543
No 60
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.73 E-value=0.0071 Score=50.32 Aligned_cols=103 Identities=10% Similarity=-0.021 Sum_probs=65.9
Q ss_pred cCCcccc---ce--eeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCCC
Q psy5266 11 TGTPGQV---HL--IVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKPT 79 (180)
Q Consensus 11 ~G~iG~~---~~--~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~g 79 (180)
+|.+|+. ++ -|..+..||++..... .+.....++.++.++||+|++++|-......++. .+....+++|
T Consensus 4 lG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g 83 (288)
T TIGR01692 4 LGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKG 83 (288)
T ss_pred ccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCC
Confidence 4666664 11 1345677776644211 1223456899999999999999997666565552 3455678889
Q ss_pred cEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266 80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM 113 (180)
Q Consensus 80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~ 113 (180)
.++|+++--..-....+.+.+++..+.+.-.+|+
T Consensus 84 ~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~ 117 (288)
T TIGR01692 84 SLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVS 117 (288)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCC
Confidence 9999998444334456777777666655444454
No 61
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.66 E-value=0.01 Score=49.92 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=53.1
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCc------cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCC
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGS------KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPT 79 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g 79 (180)
.|.+|+. +.+|+.+..++.+..... .....+.++.+.++++|+|+.++|. .+++++.++.|+++
T Consensus 160 ~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g 234 (296)
T PRK08306 160 FGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPE 234 (296)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCC
Confidence 5777764 357888888877754210 0112345788999999999999883 57899999999999
Q ss_pred cEEEecCC
Q psy5266 80 AILINTSR 87 (180)
Q Consensus 80 ~~lvn~~R 87 (180)
.++|+++-
T Consensus 235 ~vIIDla~ 242 (296)
T PRK08306 235 ALIIDLAS 242 (296)
T ss_pred cEEEEEcc
Confidence 99998864
No 62
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.37 E-value=0.017 Score=50.91 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=59.6
Q ss_pred cCCcccc-----ceeeeEEEeccccccC--Cccce-eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTG--GSKQV-YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 82 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l 82 (180)
.|.||+. +.+|+++..+|.+... ..... +...++++.++.+|+|+.+. .+.++|+.+.+..||+|.++
T Consensus 210 ~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at----G~~~~i~~~~l~~mk~Ggil 285 (413)
T cd00401 210 YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT----GNKDIITGEHFEQMKDGAIV 285 (413)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC----CCHHHHHHHHHhcCCCCcEE
Confidence 5677764 3577788877665432 11111 23446788999999998763 35678999999999999999
Q ss_pred EecCCCCc-cCHHHHHH
Q psy5266 83 INTSRGGL-LDQEALVE 98 (180)
Q Consensus 83 vn~~Rg~~-vd~~al~~ 98 (180)
+|+++..+ ++...+..
T Consensus 286 vnvG~~~~eId~~~L~~ 302 (413)
T cd00401 286 CNIGHFDVEIDVKGLKE 302 (413)
T ss_pred EEeCCCCCccCHHHHHh
Confidence 99999764 66666554
No 63
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.36 E-value=0.011 Score=49.49 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=71.6
Q ss_pred cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQFSLMKP 78 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i~~mk~ 78 (180)
+|.+|+.+ --|.++..||++..... .+.....+.+++.+. +|+|++++|-...+..++ .+....+++
T Consensus 8 lG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l~~~l~~ 86 (301)
T PRK09599 8 LGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DELAPLLSP 86 (301)
T ss_pred ccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHHHhhCCC
Confidence 56777741 12345677777654311 123345688898876 699999999766667776 356677899
Q ss_pred CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266 79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM 113 (180)
Q Consensus 79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~ 113 (180)
|.++|+.+.........+.+.+++..+.++-.+|+
T Consensus 87 g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 87 GDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred CCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCC
Confidence 99999999988877888888888888765544454
No 64
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.31 E-value=0.0074 Score=46.05 Aligned_cols=103 Identities=16% Similarity=0.121 Sum_probs=68.7
Q ss_pred cCCcccc---cee--eeEEEeccccccC----CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCH-hHHhccCCCc
Q psy5266 11 TGTPGQV---HLI--VCVLIRYHVDLTG----GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGR-KQFSLMKPTA 80 (180)
Q Consensus 11 ~G~iG~~---~~~--~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~-~~i~~mk~g~ 80 (180)
+|++|+. |+. |..+..||++... ...+.....++.|+.++||+|++++|-..+...++.. +.+..+++|.
T Consensus 9 lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~ 88 (163)
T PF03446_consen 9 LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGK 88 (163)
T ss_dssp -SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTE
T ss_pred hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhccccce
Confidence 4666664 111 4566778866543 1234567889999999999999999976666555432 3567789999
Q ss_pred EEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266 81 ILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM 113 (180)
Q Consensus 81 ~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~ 113 (180)
++|+++-...-....+.+.+++..+.+.-.+|+
T Consensus 89 iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 89 IIIDMSTISPETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp EEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEecCCcchhhhhhhhhhhhhccceeeeeeee
Confidence 999998877777778888888877765555554
No 65
>PLN02712 arogenate dehydrogenase
Probab=94.49 E-value=0.012 Score=54.72 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=63.4
Q ss_pred cCCccccc-----eeeeEEEeccccccC-Cc--cceeeccCHHHHhc-cCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTG-GS--KQVYLILVIRTRSA-QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 81 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~l~~-~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~ 81 (180)
.|.||+.+ -.|..+.+|+.+... .. .+.....+++++++ .+|+|++++| ...+..++..-....||+|++
T Consensus 377 lG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi~~l~~~~lk~g~i 455 (667)
T PLN02712 377 FGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVLKSLPFQRLKRSTL 455 (667)
T ss_pred cCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHHHHHHHhcCCCCcE
Confidence 67788762 134567777766321 00 11223568888876 5999999999 467888887765557999999
Q ss_pred EEecCCCCccCHHHHHHHHhcC
Q psy5266 82 LINTSRGGLLDQEALVEFLRDK 103 (180)
Q Consensus 82 lvn~~Rg~~vd~~al~~~L~~~ 103 (180)
+++++...-...+.+.+.+..+
T Consensus 456 vvDv~SvK~~~~~~~~~~l~~~ 477 (667)
T PLN02712 456 FVDVLSVKEFPRNLFLQHLPQD 477 (667)
T ss_pred EEECCCccHHHHHHHHHhccCC
Confidence 9999887755566677776654
No 66
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.45 E-value=0.0065 Score=51.96 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=37.4
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
..+.++++++||+|++++|.+.. ..+++.+.+..||+|+++ .++.|
T Consensus 64 ~~s~~eaa~~ADVVvLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 64 VLTVAEAAKWADVIMILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred eCCHHHHHhcCCEEEEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCC
Confidence 45899999999999999997654 777777778889999877 55555
No 67
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=94.17 E-value=0.11 Score=44.54 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=56.1
Q ss_pred eeEEEeccccccCCc---------cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCcc
Q psy5266 21 VCVLIRYHVDLTGGS---------KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 91 (180)
Q Consensus 21 ~~~~~~~~~~~~~~~---------~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~v 91 (180)
|-.+..||+++.... .+.....+..++.++||+|++++|-...+..++ .+.+..+++|.++|+++- +
T Consensus 43 GheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~GaIVID~ST---I 118 (341)
T TIGR01724 43 GHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENAVICNTCT---V 118 (341)
T ss_pred CCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCCEEEECCC---C
Confidence 344677777654321 233566789999999999999999777777777 568888999999999854 4
Q ss_pred CHHHHHHHHhc
Q psy5266 92 DQEALVEFLRD 102 (180)
Q Consensus 92 d~~al~~~L~~ 102 (180)
+.+.+.+.|+.
T Consensus 119 sP~t~~~~~e~ 129 (341)
T TIGR01724 119 SPVVLYYSLEK 129 (341)
T ss_pred CHHHHHHHHHH
Confidence 45555555444
No 68
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.83 E-value=0.084 Score=44.34 Aligned_cols=107 Identities=16% Similarity=0.096 Sum_probs=80.8
Q ss_pred cCCcccc---cee--eeEEEeccccccCCc-----cceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCC
Q psy5266 11 TGTPGQV---HLI--VCVLIRYHVDLTGGS-----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKP 78 (180)
Q Consensus 11 ~G~iG~~---~~~--~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~ 78 (180)
+|..|+- |++ |-.+..||.+..+.. .+.....+..|..+++|+|+.++|-.+.-+.++- .+.++.+|+
T Consensus 8 LG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~ 87 (286)
T COG2084 8 LGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP 87 (286)
T ss_pred CchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC
Confidence 5666664 122 355677777766511 2345677889999999999999998877666664 678888999
Q ss_pred CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266 79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 117 (180)
Q Consensus 79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep 117 (180)
|.++|+.+--..-....+.+.+++.-+..+--+|+-..+
T Consensus 88 G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 88 GAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 999999988877778889999999888777667765555
No 69
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=92.93 E-value=0.2 Score=44.80 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=75.0
Q ss_pred eeEEEeccccccCC---cc------ceeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 21 VCVLIRYHVDLTGG---SK------QVYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 21 ~~~~~~~~~~~~~~---~~------~~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
|-.+..||.+.... .+ +.....+++++.++ +|+|.+.+|-.+.+..+| .+.+..|++|.++|..+-.
T Consensus 13 G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l~~GdiiID~gn~ 91 (459)
T PRK09287 13 GYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLLEKGDIIIDGGNS 91 (459)
T ss_pred CCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcCCCCCEEEECCCC
Confidence 34567787776531 11 25567899999985 899999999888888888 4678889999999999887
Q ss_pred CccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266 89 GLLDQEALVEFLRDKKIGGAGLDVMIPEP 117 (180)
Q Consensus 89 ~~vd~~al~~~L~~~~i~~~~lDv~~~ep 117 (180)
..-+.....+.+++..+.++..+|+-.++
T Consensus 92 ~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 92 NYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 77778888888988888888888876554
No 70
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=92.87 E-value=0.12 Score=46.55 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=79.6
Q ss_pred cCCccccc---e--eeeEEEeccccccCCc---c-----c---eeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHh
Q psy5266 11 TGTPGQVH---L--IVCVLIRYHVDLTGGS---K-----Q---VYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRK 71 (180)
Q Consensus 11 ~G~iG~~~---~--~~~~~~~~~~~~~~~~---~-----~---~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~ 71 (180)
+|.+|+.+ + =|..+..||++..... + + .....+++|+.+. +|+|++++|-.+....++ .+
T Consensus 14 LG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi-~g 92 (493)
T PLN02350 14 LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTI-KA 92 (493)
T ss_pred eHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHH-HH
Confidence 56666641 1 1456777877654311 1 1 1245689998876 999999999888888888 56
Q ss_pred HHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266 72 QFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 117 (180)
Q Consensus 72 ~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep 117 (180)
.+..|++|.++|+.+-...-+...+.+.+++..+.++..+|+-.++
T Consensus 93 l~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 93 LSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 7888999999999988887888889999999889888888886555
No 71
>PLN02858 fructose-bisphosphate aldolase
Probab=92.79 E-value=0.05 Score=54.64 Aligned_cols=104 Identities=13% Similarity=-0.045 Sum_probs=73.2
Q ss_pred cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee--CHhHHhccCCC
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI--GRKQFSLMKPT 79 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI--g~~~i~~mk~g 79 (180)
+|.+|..+ -.|..+..||.+..... .+.....+..++.++||+|++++|-...+..++ ..+.+..+++|
T Consensus 332 lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g 411 (1378)
T PLN02858 332 LGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAG 411 (1378)
T ss_pred chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCC
Confidence 56666531 12446777876654311 122346789999999999999999888777776 34577889999
Q ss_pred cEEEecCCCCccCHHHHHHHHhc--CCcceEEeecCC
Q psy5266 80 AILINTSRGGLLDQEALVEFLRD--KKIGGAGLDVMI 114 (180)
Q Consensus 80 ~~lvn~~Rg~~vd~~al~~~L~~--~~i~~~~lDv~~ 114 (180)
.++|+.+-...-....+.+.+++ ..+..+--+|+-
T Consensus 412 ~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsG 448 (1378)
T PLN02858 412 ASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSG 448 (1378)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 99999987766666678888877 666555555653
No 72
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.55 E-value=0.064 Score=44.93 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=54.4
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCccee-C-HhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLI-G-RKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI 114 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glI-g-~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~ 114 (180)
....+..++.++||+|++++|-.+.....+ + .+.+..+++|.++|+++-...-....+.+.+++..+.++--+|+-
T Consensus 44 ~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG 121 (292)
T PRK15059 44 VSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG 121 (292)
T ss_pred eecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 356688899999999999999765555544 2 234566888999999977666666677777777666555445554
No 73
>PLN02712 arogenate dehydrogenase
Probab=92.16 E-value=0.046 Score=50.98 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=58.0
Q ss_pred cCCccccc-----eeeeEEEeccccccC-C--ccceeeccCHHHHh-ccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTG-G--SKQVYLILVIRTRS-AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 81 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~l~-~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~ 81 (180)
.|.||+.+ -.|..+.+|+.+... . ..+.....++++++ .+||+|++++|. ..+..++..-.+..+|++++
T Consensus 60 ~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l~~~~l~~g~i 138 (667)
T PLN02712 60 FGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSLPLQRLKRNTL 138 (667)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhhhhhcCCCCeE
Confidence 68888862 123466677665321 0 01223456788866 569999999995 46788887654567899999
Q ss_pred EEecCCCCccCHHHHHHHHhc
Q psy5266 82 LINTSRGGLLDQEALVEFLRD 102 (180)
Q Consensus 82 lvn~~Rg~~vd~~al~~~L~~ 102 (180)
+++++.-...-.+.+.+.+.+
T Consensus 139 VvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 139 FVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred EEECCCCcHHHHHHHHHhcCC
Confidence 999964332223455666544
No 74
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=92.02 E-value=0.045 Score=49.02 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=77.9
Q ss_pred cCCccccc-----eeeeEEEeccccccCC---cc-----c--eeeccCHHHHhc---cCCEEEEccCCCCCCcceeCHhH
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGG---SK-----Q--VYLILVIRTRSA---QSDFIFVTCALTKDTEQLIGRKQ 72 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~---~~-----~--~~~~~~l~~l~~---~~D~v~~h~pl~~~T~glIg~~~ 72 (180)
+|.+|+.. --|..+..||.+.... .+ + .....+++|+++ ++|+|.+.+|-...+..+| .+.
T Consensus 9 LG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi-~~l 87 (470)
T PTZ00142 9 LAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETI-DNL 87 (470)
T ss_pred EhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHH-HHH
Confidence 46666641 0134677787766541 11 1 235678999987 4899999999888888888 456
Q ss_pred HhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266 73 FSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 117 (180)
Q Consensus 73 i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep 117 (180)
+..+++|.++|+.+.+..-+.....+.+++..+.++..+|+-.++
T Consensus 88 ~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 88 LPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 778999999999998888888888888988888877777776544
No 75
>PLN02256 arogenate dehydrogenase
Probab=91.40 E-value=0.06 Score=45.49 Aligned_cols=92 Identities=11% Similarity=0.121 Sum_probs=59.9
Q ss_pred cCCccccc-----eeeeEEEeccccccCC---ccceeeccCHHHHh-ccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGG---SKQVYLILVIRTRS-AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 81 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~-~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~ 81 (180)
.|.||+.+ -.|..+.+|+++.... ..+.....++++++ ..+|+|++++|-. .+..++..-....++++++
T Consensus 44 ~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l~~~~l~~~~i 122 (304)
T PLN02256 44 FGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSLPLQRLKRSTL 122 (304)
T ss_pred eCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhhhhhccCCCCE
Confidence 57778762 1234566777664210 01122356788886 4799999999954 6677775543556889999
Q ss_pred EEecCCCCccCHHHHHHHHhcC
Q psy5266 82 LINTSRGGLLDQEALVEFLRDK 103 (180)
Q Consensus 82 lvn~~Rg~~vd~~al~~~L~~~ 103 (180)
+++++...-...+++.+.+..+
T Consensus 123 viDv~SvK~~~~~~~~~~l~~~ 144 (304)
T PLN02256 123 FVDVLSVKEFPKNLLLQVLPEE 144 (304)
T ss_pred EEecCCchHHHHHHHHHhCCCC
Confidence 9999886555566777776553
No 76
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.00 E-value=0.039 Score=46.39 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=45.8
Q ss_pred cCCccccceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHh--ccCCCcEEEecCCC
Q psy5266 11 TGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFS--LMKPTAILINTSRG 88 (180)
Q Consensus 11 ~G~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~--~mk~g~~lvn~~Rg 88 (180)
+|.+|+. ++.++...+.++..|.+. ...++++++++||+|++++|. .....++. .+. .++++.++++.++|
T Consensus 12 ~G~~G~~--lA~~l~~~G~~V~~~~r~--~~~~~~~~~~~advvi~~vp~-~~~~~v~~--~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 12 AGAWGST--LAGLASANGHRVRVWSRR--SGLSLAAVLADADVIVSAVSM-KGVRPVAE--QVQALNLPPETIIVTATKG 84 (308)
T ss_pred ccHHHHH--HHHHHHHCCCEEEEEeCC--CCCCHHHHHhcCCEEEEECCh-HHHHHHHH--HHHHhcCCCCcEEEEeCCc
Confidence 5777776 544443222222222211 126789999999999999996 46666663 343 47788999998875
Q ss_pred C
Q psy5266 89 G 89 (180)
Q Consensus 89 ~ 89 (180)
-
T Consensus 85 i 85 (308)
T PRK14619 85 L 85 (308)
T ss_pred c
Confidence 3
No 77
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.85 E-value=0.35 Score=41.97 Aligned_cols=76 Identities=12% Similarity=0.235 Sum_probs=52.9
Q ss_pred cCCcccc-----ceeeeEEEeccccccC-------Cccce----eeccCHHHHhccCCEEEEccCCC-CCCcceeCHhHH
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTG-------GSKQV----YLILVIRTRSAQSDFIFVTCALT-KDTEQLIGRKQF 73 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~-------~~~~~----~~~~~l~~l~~~~D~v~~h~pl~-~~T~glIg~~~i 73 (180)
.|.+|+. ..+|+++..+|.+... +.... ....++.+.++++|+|+.+++.. ..+..+|+.+.+
T Consensus 175 aG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l 254 (370)
T TIGR00518 175 GGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLV 254 (370)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHH
Confidence 4555553 2467788888876421 11111 11246788899999999998764 346678999999
Q ss_pred hccCCCcEEEecC
Q psy5266 74 SLMKPTAILINTS 86 (180)
Q Consensus 74 ~~mk~g~~lvn~~ 86 (180)
++||++.++++++
T Consensus 255 ~~mk~g~vIvDva 267 (370)
T TIGR00518 255 AQMKPGAVIVDVA 267 (370)
T ss_pred hcCCCCCEEEEEe
Confidence 9999999998875
No 78
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.73 E-value=0.19 Score=43.67 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=45.5
Q ss_pred cCCccccceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 11 TGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 11 ~G~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
+|.+|+. |+..+...+..+..+... ...+.++++++||+|++++|... +..++. + +..+++|++++.++.-
T Consensus 107 ~GlmG~s--lA~~l~~~G~~V~~~d~~--~~~~~~~~~~~aDlVilavP~~~-~~~~~~-~-l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 107 KGQLGRL--FAKMLTLSGYQVRILEQD--DWDRAEDILADAGMVIVSVPIHL-TEEVIA-R-LPPLPEDCILVDLTSV 177 (374)
T ss_pred CChhhHH--HHHHHHHCCCeEEEeCCC--cchhHHHHHhcCCEEEEeCcHHH-HHHHHH-H-HhCCCCCcEEEECCCc
Confidence 5777787 554444333333222211 12467889999999999999763 456662 2 4448889999988543
No 79
>PLN02858 fructose-bisphosphate aldolase
Probab=90.31 E-value=0.14 Score=51.47 Aligned_cols=104 Identities=10% Similarity=-0.054 Sum_probs=72.6
Q ss_pred cCCcccc---ce--eeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee--CHhHHhccCCC
Q psy5266 11 TGTPGQV---HL--IVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI--GRKQFSLMKPT 79 (180)
Q Consensus 11 ~G~iG~~---~~--~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI--g~~~i~~mk~g 79 (180)
+|.+|.. ++ =|-.+..||.+..... .+.....+..|+.++||+|++++|-.+....++ ..+.+..+++|
T Consensus 12 LG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g 91 (1378)
T PLN02858 12 LDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKG 91 (1378)
T ss_pred hhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCc
Confidence 5666664 11 1344567777654311 223467799999999999999999887777775 34667789999
Q ss_pred cEEEecCCCCccCHHHHHHHHhcCC--cceEEeecCC
Q psy5266 80 AILINTSRGGLLDQEALVEFLRDKK--IGGAGLDVMI 114 (180)
Q Consensus 80 ~~lvn~~Rg~~vd~~al~~~L~~~~--i~~~~lDv~~ 114 (180)
.++|+++--..-....+.+.+++.. +..+-.+|+-
T Consensus 92 ~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsG 128 (1378)
T PLN02858 92 AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSK 128 (1378)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcC
Confidence 9999998766666677887777766 6555555653
No 80
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.84 E-value=0.43 Score=40.09 Aligned_cols=42 Identities=14% Similarity=0.312 Sum_probs=35.1
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 89 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~ 89 (180)
..+|++.+++||||+..++ +.++|+. ..+|+|+++|+++-..
T Consensus 192 t~~l~~~~~~ADIVV~avG----~~~~i~~---~~ik~gavVIDVGin~ 233 (285)
T PRK14189 192 TRDLAAHTRQADIVVAAVG----KRNVLTA---DMVKPGATVIDVGMNR 233 (285)
T ss_pred CCCHHHHhhhCCEEEEcCC----CcCccCH---HHcCCCCEEEEccccc
Confidence 3579999999999999999 5578887 6689999999987443
No 81
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=89.70 E-value=0.36 Score=43.36 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=63.4
Q ss_pred HHHHhccCCEEEEccCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------cCHHHHHHHHhcCCcceE
Q psy5266 44 IRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------LDQEALVEFLRDKKIGGA 108 (180)
Q Consensus 44 l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------vd~~al~~~L~~~~i~~~ 108 (180)
++.+++..+ ..+.++|.+++|.+.+++ ++. |+.++-+.+... +....+.++++.+|++..
T Consensus 241 ~d~~~R~~~-----~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~ 315 (476)
T PTZ00075 241 IDGIFRATD-----VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVT 315 (476)
T ss_pred HHHHHHhcC-----CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEE
Confidence 455665553 478899999999999996 454 766655533211 112347788999999544
Q ss_pred EeecCCCCCCCCCCCCCC------C-Cceee---cccCHHHHHHHHHccccccccccCCCCCCCC
Q psy5266 109 GLDVMIPEPLPADHPLVQ------L-DNCGN---GLLDQEALVEFLRDKKIGGAGLDVMIPEPMP 163 (180)
Q Consensus 109 ~lDv~~~ep~~~~~~l~~------~-~Nv~~---g~~~~~al~~~L~~g~l~ga~ldV~~~Eplp 163 (180)
+ . .+..+++ + ++.++ |..+.+..+++|+.+. ++|+++.+|..
T Consensus 316 a------t---Gt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 316 A------T---GNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred C------C---CcccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcC----CceeecccCCC
Confidence 3 1 1223333 2 22222 3447888888888652 68888888744
No 82
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=88.95 E-value=0.87 Score=39.64 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=48.0
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC-ccCHHHHHHH
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG-LLDQEALVEF 99 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~-~vd~~al~~~ 99 (180)
+++.++++..+.+||++-+. .+.++|..+.+..||.|+++-|.++=. -|+...|++.
T Consensus 253 f~V~~m~~Aa~~gDifiT~T----GnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~ 310 (420)
T COG0499 253 FRVMTMEEAAKTGDIFVTAT----GNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEEL 310 (420)
T ss_pred cEEEEhHHhhhcCCEEEEcc----CCcCccCHHHHHhccCCeEEecccccceeccHHHHHHh
Confidence 67889999999999988763 578999999999999999999998643 4777777754
No 83
>PRK08655 prephenate dehydrogenase; Provisional
Probab=88.50 E-value=0.24 Score=43.86 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=55.2
Q ss_pred cCCccccc-----eeeeEEEeccccccCCc-----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGGS-----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTA 80 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~ 80 (180)
+|.+|+.. -.|..+..|+++..... .+.....++++.+++||+|++++|.. .+..++ .+....+++++
T Consensus 9 ~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l~~~l~~~~ 86 (437)
T PRK08655 9 TGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEVAPHVKEGS 86 (437)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHHHhhCCCCC
Confidence 46677751 01334566665533210 11223457888999999999999964 344555 33445688899
Q ss_pred EEEecCCCCccCHHHHHHHHhc
Q psy5266 81 ILINTSRGGLLDQEALVEFLRD 102 (180)
Q Consensus 81 ~lvn~~Rg~~vd~~al~~~L~~ 102 (180)
+++.++.-.....+.+.+.+..
T Consensus 87 iViDvsSvK~~~~~~l~~~~~~ 108 (437)
T PRK08655 87 LLMDVTSVKERPVEAMEEYAPE 108 (437)
T ss_pred EEEEcccccHHHHHHHHHhcCC
Confidence 9999886544445566666554
No 84
>PRK08818 prephenate dehydrogenase; Provisional
Probab=88.49 E-value=0.074 Score=46.25 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=43.2
Q ss_pred cCCccccceeee--------EEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHh-HH-hccCCCc
Q psy5266 11 TGTPGQVHLIVC--------VLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRK-QF-SLMKPTA 80 (180)
Q Consensus 11 ~G~iG~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~-~i-~~mk~g~ 80 (180)
+|-||+. |+. .+.+||+. .....++++.+++||+|++++|.. .+..+|..- .+ ..+|+++
T Consensus 13 ~GliGgs--lA~alk~~~~~~V~g~D~~-------d~~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~~~l~~~~ 82 (370)
T PRK08818 13 AGAYGRW--LARFLRTRMQLEVIGHDPA-------DPGSLDPATLLQRADVLIFSAPIR-HTAALIEEYVALAGGRAAGQ 82 (370)
T ss_pred CCHHHHH--HHHHHHhcCCCEEEEEcCC-------ccccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhhcCCCCCe
Confidence 4778876 433 44455542 122456889999999999999965 344444321 11 3478999
Q ss_pred EEEecCC
Q psy5266 81 ILINTSR 87 (180)
Q Consensus 81 ~lvn~~R 87 (180)
+++.++.
T Consensus 83 iVtDVgS 89 (370)
T PRK08818 83 LWLDVTS 89 (370)
T ss_pred EEEECCC
Confidence 9998754
No 85
>KOG0067|consensus
Probab=87.99 E-value=0.24 Score=43.13 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=27.8
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL 75 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~ 75 (180)
-.+..++.+-+|+.+.||-+...+.-.++..-+.+
T Consensus 105 g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h 139 (435)
T KOG0067|consen 105 GYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH 139 (435)
T ss_pred ccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence 44788899999999999999888777777765443
No 86
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=87.76 E-value=0.76 Score=39.52 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=53.5
Q ss_pred eEEEeccccccC---------CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccC
Q psy5266 22 CVLIRYHVDLTG---------GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD 92 (180)
Q Consensus 22 ~~~~~~~~~~~~---------~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd 92 (180)
-.+..||++... ...+.....+..+..++||+|++++|-......++ .+....++++.++++++.+....
T Consensus 44 ~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~IVId~ST~~~~~ 122 (342)
T PRK12557 44 HDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENAVICNTCTVSPVV 122 (342)
T ss_pred CeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCCEEEEecCCCHHH
Confidence 456777765531 11223345688899999999999999443366666 35667788899999998776444
Q ss_pred H-HHHHHHHh
Q psy5266 93 Q-EALVEFLR 101 (180)
Q Consensus 93 ~-~al~~~L~ 101 (180)
. +.+.+.+.
T Consensus 123 ~s~~l~~~l~ 132 (342)
T PRK12557 123 LYYSLEGELR 132 (342)
T ss_pred HHHHHHHHhc
Confidence 3 55666664
No 87
>KOG1370|consensus
Probab=87.71 E-value=0.91 Score=38.84 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=57.7
Q ss_pred CCcccc-----ceeeeEEEeccccccCC---ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266 12 GTPGQV-----HLIVCVLIRYHVDLTGG---SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI 83 (180)
Q Consensus 12 G~iG~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv 83 (180)
|..|+- .+||++++.-..+...- +-+-++..+|+|..+++||++-.. ..+.+|-.+.+.+||.++++-
T Consensus 223 GdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~H~~~mk~d~IvC 298 (434)
T KOG1370|consen 223 GDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGEHFDQMKNDAIVC 298 (434)
T ss_pred CccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHHHHHhCcCCcEEe
Confidence 555653 46777777666665531 122368889999999999987653 567899999999999999999
Q ss_pred ecCCCCc-cCHH
Q psy5266 84 NTSRGGL-LDQE 94 (180)
Q Consensus 84 n~~Rg~~-vd~~ 94 (180)
|++.-.+ +|..
T Consensus 299 N~Ghfd~EiDv~ 310 (434)
T KOG1370|consen 299 NIGHFDTEIDVK 310 (434)
T ss_pred ccccccceeehh
Confidence 9987542 4443
No 88
>PLN02494 adenosylhomocysteinase
Probab=87.65 E-value=0.4 Score=43.01 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=69.6
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------cCHHHHHHHHhcCCc
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------LDQEALVEFLRDKKI 105 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------vd~~al~~~L~~~~i 105 (180)
.+.++-+++..++ .+.++|.+++|.+.+++ ++. |+.++-+.+... +....+.++++.+|+
T Consensus 238 qS~~d~i~r~t~i-----~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADV 312 (477)
T PLN02494 238 HSLPDGLMRATDV-----MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADI 312 (477)
T ss_pred ccHHHHHHHhcCC-----ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCE
Confidence 4567888877664 26689999999999996 454 666665544321 111136778888998
Q ss_pred ceEEeecCCCCCCCCCCCCCCCC------ceeec--ccCHHHHHHH--HHccccccccccCCCCC
Q psy5266 106 GGAGLDVMIPEPLPADHPLVQLD------NCGNG--LLDQEALVEF--LRDKKIGGAGLDVMIPE 160 (180)
Q Consensus 106 ~~~~lDv~~~ep~~~~~~l~~~~------Nv~~g--~~~~~al~~~--L~~g~l~ga~ldV~~~E 160 (180)
+.. ............|-.++ |+.+. .++.++|.++ ++.+.++ ..+|++.-+
T Consensus 313 VI~---tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 313 FVT---TTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred EEE---CCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 432 11111111111222232 66662 8999999998 8888887 889988653
No 89
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=86.23 E-value=2.1 Score=32.06 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=32.9
Q ss_pred CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC
Q psy5266 43 VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 89 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~ 89 (180)
++++..++||+|+...+.. ++|..+. +|+|+++++++...
T Consensus 64 ~l~~~v~~ADIVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKP----EKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHHHHhhCCEEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence 7999999999999998744 5676554 78999999987665
No 90
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=84.91 E-value=2.1 Score=35.76 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=64.7
Q ss_pred cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHH---hccCCEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTR---SAQSDFIFVTCALTKDTEQLIGRKQFSLMKP 78 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l---~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~ 78 (180)
.|++|+.+ --|..+..||++..... .......+++++ +.++|+|++++|-. .+..++ .+....+++
T Consensus 8 lG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~l~~~l~~ 85 (298)
T TIGR00872 8 LGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EELAPTLEK 85 (298)
T ss_pred chHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HHHHhhCCC
Confidence 46666641 01335566776654211 112233455554 45689999999976 777777 355667889
Q ss_pred CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266 79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM 113 (180)
Q Consensus 79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~ 113 (180)
|.++|+++-+...+...+.+.+++..+..+...|+
T Consensus 86 g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 86 GDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred CCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCC
Confidence 99999998877667777777777766655555554
No 91
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.52 E-value=5.7 Score=33.31 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=41.7
Q ss_pred ceeeccCHHHHhccCCEEEEccCCCCCC---cc-------eeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcc
Q psy5266 37 QVYLILVIRTRSAQSDFIFVTCALTKDT---EQ-------LIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIG 106 (180)
Q Consensus 37 ~~~~~~~l~~l~~~~D~v~~h~pl~~~T---~g-------lIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~ 106 (180)
+.....+.++.+++||+|.+-+|.+.+. .. -++.+.+++||+++.++ ++ ..+.. +.+.+++..+.
T Consensus 42 g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G---~~~~~-~~~~~~~~gi~ 116 (296)
T PRK08306 42 GATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SG---IANPY-LKELAKETNRK 116 (296)
T ss_pred CceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-Ee---cCCHH-HHHHHHHCCCe
Confidence 3344557889999999999999975332 11 23678899999997444 22 22222 33555555654
Q ss_pred e
Q psy5266 107 G 107 (180)
Q Consensus 107 ~ 107 (180)
.
T Consensus 117 ~ 117 (296)
T PRK08306 117 L 117 (296)
T ss_pred E
Confidence 4
No 92
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=84.49 E-value=1.8 Score=38.85 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=72.0
Q ss_pred cCCccccc---e--eeeEEEeccccccCCc---c------ceeeccCHHHHh---ccCCEEEEccCCCCCCcceeCHhHH
Q psy5266 11 TGTPGQVH---L--IVCVLIRYHVDLTGGS---K------QVYLILVIRTRS---AQSDFIFVTCALTKDTEQLIGRKQF 73 (180)
Q Consensus 11 ~G~iG~~~---~--~~~~~~~~~~~~~~~~---~------~~~~~~~l~~l~---~~~D~v~~h~pl~~~T~glIg~~~i 73 (180)
+|.+|+.. + -|-.+..|+.+..... + ......+++++. +++|+|.+++|-...+..++ .+.+
T Consensus 7 LG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi-~~l~ 85 (467)
T TIGR00873 7 LAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI-NQLL 85 (467)
T ss_pred eHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH-HHHH
Confidence 46666641 0 1335677776655311 1 123456777776 46899999999777777777 4566
Q ss_pred hccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266 74 SLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 117 (180)
Q Consensus 74 ~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep 117 (180)
..+++|.++|+.+....-+.....+.+++..+.++..+|+-.++
T Consensus 86 ~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 86 PLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred hhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 67889999999988776677777777887778777777775544
No 93
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=84.07 E-value=3.7 Score=30.51 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=45.4
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI 114 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~ 114 (180)
.+-++++++||+|.---|.. .+.+++|++|.+++....-. ....+.+.|.+..+...++|...
T Consensus 56 ~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ip 118 (136)
T PF05222_consen 56 SRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIP 118 (136)
T ss_dssp SSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred cCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence 35669999999998776653 67888999999999776544 46677777888888888887653
No 94
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=81.76 E-value=2.5 Score=36.30 Aligned_cols=45 Identities=7% Similarity=0.014 Sum_probs=38.3
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
..++++++..+|+|+.|. +.+.++.+++.+.+|+.+++++..-..
T Consensus 66 ~g~~eeLl~~vDiVve~T---p~~~~~~na~~~~~~GakaVl~~~p~~ 110 (333)
T TIGR01546 66 AGTLEDLLEKVDIVVDAT---PGGIGAKNKPLYEKAGVKAIFQGGEKA 110 (333)
T ss_pred cCCHHHHhhcCCEEEECC---CCCCChhhHHHHHhCCcCEEEECCCCC
Confidence 447999999999999885 588999999999999999999876443
No 95
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=80.21 E-value=26 Score=30.54 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=38.7
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCH--------hHHhccCCCcEEEecCCCCccCHHHHH-HHHhc
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGR--------KQFSLMKPTAILINTSRGGLLDQEALV-EFLRD 102 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~--------~~i~~mk~g~~lvn~~Rg~~vd~~al~-~~L~~ 102 (180)
...++++.+++||+|++++|-.....+-.+. +....+++|.++++.+--..-....+. .++++
T Consensus 66 ~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 66 ATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred EECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 4457888899999999999965432222222 233457889999987632222334453 44444
No 96
>PLN02688 pyrroline-5-carboxylate reductase
Probab=79.73 E-value=1.7 Score=35.34 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=41.9
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcC
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDK 103 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~ 103 (180)
....+.+++.++||+|++++| ......++. +....++++.++|.+.-+ +..+.+.+.+...
T Consensus 50 ~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~-~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~~ 110 (266)
T PLN02688 50 KTAASNTEVVKSSDVIILAVK-PQVVKDVLT-ELRPLLSKDKLLVSVAAG--ITLADLQEWAGGR 110 (266)
T ss_pred EEeCChHHHHhcCCEEEEEEC-cHHHHHHHH-HHHhhcCCCCEEEEecCC--CcHHHHHHHcCCC
Confidence 345678899999999999997 444555552 344557788888876544 4667777666443
No 97
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=78.11 E-value=3.6 Score=34.09 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=43.7
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcc
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIG 106 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~ 106 (180)
.+.+++++++++|+|+++.|.. ++.-+. ...++.|..++..+.+.+.+.++|.++.++....
T Consensus 57 ~~~~~eell~~~D~Vvi~tp~~--~h~e~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 57 PVVPLDQLATHADIVVEAAPAS--VLRAIV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred ccCCHHHHhcCCCEEEECCCcH--HHHHHH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 4578999999999999999943 222222 2335667777777788776777888877776653
No 98
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.76 E-value=5 Score=33.74 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=33.4
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 89 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~ 89 (180)
.+|++..++||+|+..+. ..++|+.+.+ |+|+++|+++...
T Consensus 193 ~~l~~~~~~ADIvI~AvG----~p~~i~~~~i---k~gavVIDvGi~~ 233 (284)
T PRK14190 193 KNLAELTKQADILIVAVG----KPKLITADMV---KEGAVVIDVGVNR 233 (284)
T ss_pred hhHHHHHHhCCEEEEecC----CCCcCCHHHc---CCCCEEEEeeccc
Confidence 479999999999999985 3357888776 8899999987554
No 99
>PRK06545 prephenate dehydrogenase; Validated
Probab=77.57 E-value=0.44 Score=40.99 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=37.2
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHh--ccCCCcEEEecCCCCccCHHHHHHH
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFS--LMKPTAILINTSRGGLLDQEALVEF 99 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~--~mk~g~~lvn~~Rg~~vd~~al~~~ 99 (180)
..++++.+++||+|++++|.. .+..++. .+. .+++++++..++.-..-..+.+.+.
T Consensus 51 ~~~~~~~~~~aDlVilavP~~-~~~~vl~--~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 51 AADLQRAAAEADLIVLAVPVD-ATAALLA--ELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred ccCHHHHhcCCCEEEEeCCHH-HHHHHHH--HHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 357889999999999999974 4556653 333 3778888887765443233344443
No 100
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=77.19 E-value=6.3 Score=33.48 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=33.7
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
....+.++++++||+|+.+.| .+..++..+ .+|+|+.+.+++
T Consensus 181 ~~~~~~~eav~~aDiVitaT~---s~~P~~~~~---~l~~g~~v~~vG 222 (325)
T TIGR02371 181 RAATDPREAVEGCDILVTTTP---SRKPVVKAD---WVSEGTHINAIG 222 (325)
T ss_pred EEeCCHHHHhccCCEEEEecC---CCCcEecHH---HcCCCCEEEecC
Confidence 346789999999999999987 455777655 459999998886
No 101
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.60 E-value=1.7 Score=36.72 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=41.3
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCc-cC--HHHHHHHHhc
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL-LD--QEALVEFLRD 102 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~-vd--~~al~~~L~~ 102 (180)
....++++.++.+|+|++++|-.. + .+.+..++++..++++..|-. -+ ...+.+.+.+
T Consensus 63 ~~~~~~~e~~~~aD~Vi~~v~~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 63 YPTADPEEALAGADFAVVAVPSKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred EEeCCHHHHHcCCCEEEEECchHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 345689899999999999999652 2 556678899999998887632 21 3455555544
No 102
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.18 E-value=3.6 Score=34.74 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=32.6
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.+|++.+++||+|+..++ +. ++|..+.+ |+|+++|+++
T Consensus 198 ~~l~~~~~~ADIvI~Avg---~~-~li~~~~v---k~GavVIDVg 235 (295)
T PRK14174 198 KDIPSYTRQADILIAAIG---KA-RFITADMV---KPGAVVIDVG 235 (295)
T ss_pred hhHHHHHHhCCEEEEecC---cc-CccCHHHc---CCCCEEEEee
Confidence 469999999999999985 33 78998888 8899999885
No 103
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.97 E-value=3.9 Score=34.26 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=32.4
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.+|++..++||+|+..++ +. +++..+.+ |+|+++|.++
T Consensus 187 ~~L~~~~~~ADIvI~Avg---k~-~lv~~~~v---k~GavVIDVg 224 (279)
T PRK14178 187 ENLKAELRQADILVSAAG---KA-GFITPDMV---KPGATVIDVG 224 (279)
T ss_pred hHHHHHHhhCCEEEECCC---cc-cccCHHHc---CCCcEEEEee
Confidence 479999999999999996 33 78888885 9999999886
No 104
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=74.65 E-value=8.2 Score=35.15 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=34.0
Q ss_pred HHHHhccCCEEEEccCCCCC-CcceeCHhHHhccCCCcEEEecC--CCC
Q psy5266 44 IRTRSAQSDFIFVTCALTKD-TEQLIGRKQFSLMKPTAILINTS--RGG 89 (180)
Q Consensus 44 l~~l~~~~D~v~~h~pl~~~-T~glIg~~~i~~mk~g~~lvn~~--Rg~ 89 (180)
+.+.++.+|+|+.++=...+ .--+|.++.++.||+|.++|+.+ .|+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GG 289 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGG 289 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCC
Confidence 56677899999666522222 33589999999999999998774 454
No 105
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.63 E-value=15 Score=31.40 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=49.9
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM 113 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~ 113 (180)
...++++.++.||+|.-++|-+.+...-+-.+..+.+++++ ++..+-.. +...++.+.++... ..+++=.|
T Consensus 73 ~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~-R~~g~Hff 143 (321)
T PRK07066 73 FVATIEACVADADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPE-RCVVGHPF 143 (321)
T ss_pred ecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcc-cEEEEecC
Confidence 45689999999999999999888877777777778899998 44444443 45666777665433 23343344
No 106
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=74.48 E-value=4.9 Score=28.24 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=41.9
Q ss_pred eeeEEEeccccccCCcc-------ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHH-hccCCCcEEEec
Q psy5266 20 IVCVLIRYHVDLTGGSK-------QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQF-SLMKPTAILINT 85 (180)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-------~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i-~~mk~g~~lvn~ 85 (180)
.|+.+..|||....... +.....++++.++.+|.|+++.+...=. . ++.+.+ ..|+++.+++-+
T Consensus 29 ~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~-~-l~~~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 29 RGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFR-E-LDWEEIAKLMRKPPVIIDG 100 (106)
T ss_dssp TT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGG-C-CGHHHHHHHSCSSEEEEES
T ss_pred CCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHh-c-cCHHHHHHhcCCCCEEEEC
Confidence 37789999999886332 2344668999999999999998865322 2 555555 457667777765
No 107
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.23 E-value=1.4 Score=37.23 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=30.2
Q ss_pred CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 43 VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
+++++.++||+|+.+++-.+ ++.... +|+|+++|+++-
T Consensus 194 ~l~e~~~~ADIVIsavg~~~----~v~~~~---lk~GavVIDvGi 231 (296)
T PRK14188 194 DLPAVCRRADILVAAVGRPE----MVKGDW---IKPGATVIDVGI 231 (296)
T ss_pred CHHHHHhcCCEEEEecCChh----hcchhe---ecCCCEEEEcCC
Confidence 69999999999999998543 444333 899999998864
No 108
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=73.51 E-value=3.2 Score=35.66 Aligned_cols=53 Identities=17% Similarity=0.406 Sum_probs=41.4
Q ss_pred ccCHHHHhccCCEEEEccCCC-CCCcceeCHhHHhccCCCcEEEecC--CCCccCH
Q psy5266 41 ILVIRTRSAQSDFIFVTCALT-KDTEQLIGRKQFSLMKPTAILINTS--RGGLLDQ 93 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~-~~T~glIg~~~i~~mk~g~~lvn~~--Rg~~vd~ 93 (180)
...+++.+.++|+|+-.+=.. .+.--++-++.+++||+|.++|.++ .|+++..
T Consensus 222 ~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et 277 (371)
T COG0686 222 PSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFET 277 (371)
T ss_pred HHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceec
Confidence 446999999999997766544 4566788899999999999998774 5666554
No 109
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=72.53 E-value=2.5 Score=35.35 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=49.1
Q ss_pred HHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcC-CcceEEeecCCCCCCCC--
Q psy5266 44 IRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDK-KIGGAGLDVMIPEPLPA-- 120 (180)
Q Consensus 44 l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~-~i~~~~lDv~~~ep~~~-- 120 (180)
+.+....||+|++++|.. .|..+|.. ....+|+|++++.++.-.---.+++.+.+.+. .+ +. --|+..
T Consensus 58 ~~~~~~~aD~VivavPi~-~~~~~l~~-l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~------vg-~HPM~G~~ 128 (279)
T COG0287 58 LAEAAAEADLVIVAVPIE-ATEEVLKE-LAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRF------VG-GHPMFGPE 128 (279)
T ss_pred hhhhcccCCEEEEeccHH-HHHHHHHH-hcccCCCCCEEEecccccHHHHHHHHHhccCCCee------Ee-cCCCCCCc
Confidence 367788899999999954 56666532 22268999999987654433455566555442 23 22 234321
Q ss_pred -CCCCCCCCceeec
Q psy5266 121 -DHPLVQLDNCGNG 133 (180)
Q Consensus 121 -~~~l~~~~Nv~~g 133 (180)
..+++....++++
T Consensus 129 ~~~~lf~~~~~vlt 142 (279)
T COG0287 129 ADAGLFENAVVVLT 142 (279)
T ss_pred ccccccCCCEEEEc
Confidence 3455555566665
No 110
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.00 E-value=1.8 Score=36.69 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=31.5
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
.+++++.++||+|+.+++-. +.+.... +|+|+++|+++-
T Consensus 194 ~~l~e~~~~ADIVIsavg~~----~~v~~~~---ik~GaiVIDvgi 232 (301)
T PRK14194 194 TDAKALCRQADIVVAAVGRP----RLIDADW---LKPGAVVIDVGI 232 (301)
T ss_pred CCHHHHHhcCCEEEEecCCh----hcccHhh---ccCCcEEEEecc
Confidence 38999999999999999854 4555544 899999998873
No 111
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=70.78 E-value=8.4 Score=29.69 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=34.8
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD 92 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd 92 (180)
..++.+.+.+||+|+.+.+ ... +|..+. ++++.++|..+....+|
T Consensus 78 ~~~l~~~l~~aDiVIsat~---~~~-ii~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 78 TKNLKEHTKQADIVIVAVG---KPG-LVKGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred chhHHHHHhhCCEEEEcCC---CCc-eecHHH---ccCCeEEEEccCCCccc
Confidence 3578999999999999977 333 788885 46688999887665544
No 112
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=70.70 E-value=4.5 Score=30.77 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=33.4
Q ss_pred CHHHHhccCCEEEEccCC-CCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 43 VIRTRSAQSDFIFVTCAL-TKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~pl-~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.|.+.++.+|+|..++-. .+..--+|..+.+++||++.+++.++
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 588999999998865544 56777899999999999999998763
No 113
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=68.93 E-value=3.8 Score=32.67 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=26.5
Q ss_pred HHHHhccCCEEEEccCC-CCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 44 IRTRSAQSDFIFVTCAL-TKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 44 l~~l~~~~D~v~~h~pl-~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
.+.++++||+|+++--. .++...-| ...+..||+|+.+|...+
T Consensus 116 ~~~~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 116 VKDIWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGARIISTKP 159 (205)
T ss_dssp HHHHGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEEESS-
T ss_pred HhhhhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEEECCC
Confidence 56778999999998443 34444444 677788999999998643
No 114
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=68.25 E-value=13 Score=29.69 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=30.4
Q ss_pred HHHHhccCCEEEEccCCCCCCcce-eCHhHHhccCCCcEEEecCCCC
Q psy5266 44 IRTRSAQSDFIFVTCALTKDTEQL-IGRKQFSLMKPTAILINTSRGG 89 (180)
Q Consensus 44 l~~l~~~~D~v~~h~pl~~~T~gl-Ig~~~i~~mk~g~~lvn~~Rg~ 89 (180)
+.+.+++||||+..++-. ++ |..+. .|+|+++|+++-..
T Consensus 120 l~~~~~~ADIVIsAvG~~----~~~i~~d~---ik~GavVIDVGi~~ 159 (197)
T cd01079 120 TLDCLSQSDVVITGVPSP----NYKVPTEL---LKDGAICINFASIK 159 (197)
T ss_pred HHHHhhhCCEEEEccCCC----CCccCHHH---cCCCcEEEEcCCCc
Confidence 889999999999998843 34 65544 57899999987443
No 115
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.24 E-value=3.3 Score=36.56 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=60.4
Q ss_pred CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------cCHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266 59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------LDQEALVEFLRDKKIGGAGLDVMIPEPLPADHP 123 (180)
Q Consensus 59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~ 123 (180)
.+.+++.+++|++.+++ +|. |+.++-+.+... +....+.++++.+|++.. .+..........
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVIt---aTG~~~vI~~~~ 268 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFIT---ATGNKDVIRGEH 268 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEE---CCCCHHHHHHHH
Confidence 46788999999999886 555 666654432211 111124567778887422 221111111112
Q ss_pred CCCCC------ceeec--ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccC
Q psy5266 124 LVQLD------NCGNG--LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL 171 (180)
Q Consensus 124 l~~~~------Nv~~g--~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~ 171 (180)
+..++ |+.++ .++.++|.++..+.......+|+|. +|..+++.-+
T Consensus 269 ~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~---~~~g~~i~ll 321 (406)
T TIGR00936 269 FENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYI---LKDGRRIYLL 321 (406)
T ss_pred HhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEE---eCCCCEEEEE
Confidence 22222 55554 4899999998877777777888765 3444444433
No 116
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=68.07 E-value=33 Score=28.63 Aligned_cols=83 Identities=8% Similarity=0.044 Sum_probs=51.1
Q ss_pred eeEEEecccccc-CCccceeeccCHHHHhccCCEEEEccCCCCCC----------cceeCHhHHhccCCCcEEEecCCCC
Q psy5266 21 VCVLIRYHVDLT-GGSKQVYLILVIRTRSAQSDFIFVTCALTKDT----------EQLIGRKQFSLMKPTAILINTSRGG 89 (180)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T----------~glIg~~~i~~mk~g~~lvn~~Rg~ 89 (180)
|..+..|+.... ....++....+.++.++++|+|.+-+|.+... .--++++.+++|+.++++. ++
T Consensus 24 g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~~~-~G--- 99 (287)
T TIGR02853 24 DAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKGHCTIY-VG--- 99 (287)
T ss_pred CCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcCCCCEEE-Ee---
Confidence 444444544422 11335556666777799999999999976432 2236788999999865543 22
Q ss_pred ccCHHHHHHHHhcCCcceE
Q psy5266 90 LLDQEALVEFLRDKKIGGA 108 (180)
Q Consensus 90 ~vd~~al~~~L~~~~i~~~ 108 (180)
++..++.++.++..+...
T Consensus 100 -~~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 100 -ISNPYLEQLAADAGVKLI 117 (287)
T ss_pred -cCCHHHHHHHHHCCCeEE
Confidence 445566656666665444
No 117
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=67.44 E-value=68 Score=28.91 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=51.7
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcc-----eeCHhHHh--------ccCCCcEEEecCCCCccCHHHHHHHHhc---C-
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQ-----LIGRKQFS--------LMKPTAILINTSRGGLLDQEALVEFLRD---K- 103 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~g-----lIg~~~i~--------~mk~g~~lvn~~Rg~~vd~~al~~~L~~---~- 103 (180)
..++++.++.||++++++|--....| -.+...+. .++++.++|.-+--..=..+.+...+.+ +
T Consensus 69 t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~ 148 (473)
T PLN02353 69 STDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGI 148 (473)
T ss_pred EcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCC
Confidence 34567788999999999973322111 33333333 3788888887555444345566665554 2
Q ss_pred CcceEEeecCCCCCC---CCCCCCCCCCceeecccC
Q psy5266 104 KIGGAGLDVMIPEPL---PADHPLVQLDNCGNGLLD 136 (180)
Q Consensus 104 ~i~~~~lDv~~~ep~---~~~~~l~~~~Nv~~g~~~ 136 (180)
++.. ++.+|=+ ..-+.+.+-+.++.|..+
T Consensus 149 ~f~v----~~~PErl~~G~a~~d~~~p~riViG~~~ 180 (473)
T PLN02353 149 NFQI----LSNPEFLAEGTAIEDLFKPDRVLIGGRE 180 (473)
T ss_pred CeEE----EECCCccCCCCcccccCCCCEEEEccCC
Confidence 2222 2333433 233566667777777543
No 118
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.39 E-value=7.5 Score=32.71 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=31.8
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.+|++.+++||+|+.++. ..++|..+.+ |+|+++|+++
T Consensus 196 ~~l~~~~~~ADIVI~AvG----~p~li~~~~v---k~GavVIDVG 233 (286)
T PRK14184 196 PDLAEECREADFLFVAIG----RPRFVTADMV---KPGAVVVDVG 233 (286)
T ss_pred hhHHHHHHhCCEEEEecC----CCCcCCHHHc---CCCCEEEEee
Confidence 469999999999999984 4567888777 8899998875
No 119
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=67.37 E-value=7.9 Score=29.71 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=28.0
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCc
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 90 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~ 90 (180)
.++++..++||+|+....- .++|..+ .+|+|+++|+++-...
T Consensus 71 ~~l~~~~~~ADIVVsa~G~----~~~i~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGK----PNLIKAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSS----TT-B-GG---GS-TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeecc----ccccccc---cccCCcEEEecCCccc
Confidence 5799999999999999863 4566555 4689999998765433
No 120
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=65.76 E-value=5.9 Score=33.63 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=33.8
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 89 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~ 89 (180)
...+.++++++||+|++++|-.. ....+..+....++++. +|.++.|-
T Consensus 49 ~~~s~~ea~~~ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~ 96 (314)
T TIGR00465 49 KVGTVEEAIPQADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGF 96 (314)
T ss_pred EECCHHHHHhcCCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCc
Confidence 34578899999999999999432 23344455556688775 77777764
No 121
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.59 E-value=9.3 Score=31.53 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=40.1
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCc
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKI 105 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i 105 (180)
..+.++++.++|+|++++|-. ....++ .+....++++..+|.+.-| +..+.|.+.+....+
T Consensus 55 ~~~~~e~~~~aDvVilavpp~-~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v 115 (277)
T PRK06928 55 ADNEAEIFTKCDHSFICVPPL-AVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV 115 (277)
T ss_pred eCCHHHHHhhCCEEEEecCHH-HHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence 467888999999999999932 222222 1122235567788887655 667788887764444
No 122
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=65.55 E-value=44 Score=29.17 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=51.9
Q ss_pred CHHHHhccCCEEEEccCCC-CCCcceeCHh-------HHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266 43 VIRTRSAQSDFIFVTCALT-KDTEQLIGRK-------QFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI 114 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~pl~-~~T~glIg~~-------~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~ 114 (180)
+..+..+.||+|++++|-. ....+..+.. .+.++++|.++|..+--..-..+.+.+.+.+..+ .+.
T Consensus 66 ~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~ 139 (388)
T PRK15057 66 DKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFS 139 (388)
T ss_pred chhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EEC
Confidence 4677889999999999954 2222333322 2334678989988766555556667776665444 334
Q ss_pred CCCCCC---CCCCCCCCceeec
Q psy5266 115 PEPLPA---DHPLVQLDNCGNG 133 (180)
Q Consensus 115 ~ep~~~---~~~l~~~~Nv~~g 133 (180)
+|.+.+ -+.+.+-+.++.|
T Consensus 140 PE~l~~G~a~~d~~~p~rvv~G 161 (388)
T PRK15057 140 PEFLREGKALYDNLHPSRIVIG 161 (388)
T ss_pred cccccCCcccccccCCCEEEEE
Confidence 554422 2445555566666
No 123
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=65.55 E-value=18 Score=30.40 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=33.3
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
....+.++.++.||+|+.+.| .+..++..+ .+|+|+.+..++-
T Consensus 171 ~~~~~~~eav~~aDIV~taT~---s~~P~~~~~---~l~pg~hV~aiGs 213 (301)
T PRK06407 171 RPVDNAEAALRDADTITSITN---SDTPIFNRK---YLGDEYHVNLAGS 213 (301)
T ss_pred EEeCCHHHHHhcCCEEEEecC---CCCcEecHH---HcCCCceEEecCC
Confidence 345789999999999999877 566888776 4578888776643
No 124
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.76 E-value=6 Score=32.71 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=42.4
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE-EecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL-INTSRGGLLDQEALVEFLRDKKIGGAGLDVM 113 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l-vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~ 113 (180)
...++++.+++||+|+.++|-..+....+=.+..+.+++++++ +|++- ++...+.+.++.. -...++..+
T Consensus 71 ~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt---~~~~~l~~~~~~~-~r~~g~h~~ 141 (288)
T PRK09260 71 YSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST---MSPTEIASFTKRP-ERVIAMHFF 141 (288)
T ss_pred EeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCCc-ccEEEEecC
Confidence 3567889999999999999965433222222344557888766 56654 4445566665432 223444444
No 125
>PRK07340 ornithine cyclodeaminase; Validated
Probab=64.72 E-value=13 Score=31.35 Aligned_cols=40 Identities=5% Similarity=0.076 Sum_probs=32.4
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
..++++.+++||+|+.+.| .+..++.. .+|+|+.+.+++.
T Consensus 179 ~~~~~~av~~aDiVitaT~---s~~Pl~~~----~~~~g~hi~~iGs 218 (304)
T PRK07340 179 PLDGEAIPEAVDLVVTATT---SRTPVYPE----AARAGRLVVAVGA 218 (304)
T ss_pred ECCHHHHhhcCCEEEEccC---CCCceeCc----cCCCCCEEEecCC
Confidence 4689999999999999988 44577764 3689999998864
No 126
>KOG0409|consensus
Probab=64.26 E-value=13 Score=31.82 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=54.9
Q ss_pred eeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee--CHhHHhccCCCcEE-EecCCCCccCH
Q psy5266 21 VCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI--GRKQFSLMKPTAIL-INTSRGGLLDQ 93 (180)
Q Consensus 21 ~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI--g~~~i~~mk~g~~l-vn~~Rg~~vd~ 93 (180)
|-.+..||.+..+-. .+-.-..+-.|+.+.||+|+..+|-...-+.++ ..+.++..++|... |..+--.---.
T Consensus 58 G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s 137 (327)
T KOG0409|consen 58 GYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTS 137 (327)
T ss_pred CCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHH
Confidence 567788887776521 222356689999999999999999764433322 22333444554444 44333222234
Q ss_pred HHHHHHHhcCCcceEEeec
Q psy5266 94 EALVEFLRDKKIGGAGLDV 112 (180)
Q Consensus 94 ~al~~~L~~~~i~~~~lDv 112 (180)
..+.+.++.++....--+|
T Consensus 138 ~ei~~~i~~~~~~~vDAPV 156 (327)
T KOG0409|consen 138 LEIAKAISNKGGRFVDAPV 156 (327)
T ss_pred HHHHHHHHhCCCeEEeccc
Confidence 4688888888874433333
No 127
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=62.90 E-value=9.6 Score=34.30 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=39.5
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCc
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKI 105 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i 105 (180)
....++++.+++||+|..++|-..+....+=.+.-..+++++++ ..+-.++ ....+.+.+++...
T Consensus 69 ~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~~~r 133 (495)
T PRK07531 69 TFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTHPER 133 (495)
T ss_pred EeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCCcce
Confidence 34568999999999999999966432332212223346667654 4444443 35577777755443
No 128
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.80 E-value=13 Score=31.25 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=30.8
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
..+|++..++||+|+..++-- ++|.. +.+|+|+++|+++
T Consensus 193 T~~l~~~~~~ADIvi~avG~p----~~v~~---~~vk~gavVIDvG 231 (285)
T PRK10792 193 TKNLRHHVRNADLLVVAVGKP----GFIPG---EWIKPGAIVIDVG 231 (285)
T ss_pred CCCHHHHHhhCCEEEEcCCCc----ccccH---HHcCCCcEEEEcc
Confidence 357999999999999998422 35665 5578999999887
No 129
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=61.21 E-value=9.4 Score=28.65 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=37.7
Q ss_pred eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc----cCCCcEEEecCCCC-----ccCHHHHHHHHhcCCc
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL----MKPTAILINTSRGG-----LLDQEALVEFLRDKKI 105 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~----mk~g~~lvn~~Rg~-----~vd~~al~~~L~~~~i 105 (180)
.....++++.++.||+|.+.+|-.. + ++.+++ ++++..++++..|- ..-.+-+.+.+....+
T Consensus 57 i~~t~dl~~a~~~ad~IiiavPs~~----~--~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~ 127 (157)
T PF01210_consen 57 IKATTDLEEALEDADIIIIAVPSQA----H--REVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRI 127 (157)
T ss_dssp EEEESSHHHHHTT-SEEEE-S-GGG----H--HHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGE
T ss_pred cccccCHHHHhCcccEEEecccHHH----H--HHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcce
Confidence 3456789999999999999999431 1 333333 56688999998874 1224456666666664
No 130
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.15 E-value=10 Score=31.85 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=31.8
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
.+|.+..++||+|+.+++ ..+++..+.+ |+|+++|+++-
T Consensus 192 ~~l~~~~~~ADIvV~AvG----~p~~i~~~~v---k~GavVIDvGi 230 (285)
T PRK14191 192 KDLSFYTQNADIVCVGVG----KPDLIKASMV---KKGAVVVDIGI 230 (285)
T ss_pred HHHHHHHHhCCEEEEecC----CCCcCCHHHc---CCCcEEEEeec
Confidence 468999999999999985 3467777765 89999998864
No 131
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=60.80 E-value=72 Score=27.18 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=60.7
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHH---HhcCCcceEEeecCCCCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEF---LRDKKIGGAGLDVMIPEP 117 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~---L~~~~i~~~~lDv~~~ep 117 (180)
..+-.|-.+.+|++.+.+|..+.|.++| +..+..++.|+++-|+=- +....|.+. ++..|+. |+.--|
T Consensus 130 tsDD~EAv~~aei~I~ftPfG~~q~~Ii-kkii~~lpEgAII~~tCT---Ipt~~ly~ilE~l~R~Dvg-----VsS~HP 200 (340)
T TIGR01723 130 TTDDREAVEDADIIITWLPKGNKQPDII-KKFIDDIPEGAIVTHACT---IPTTKFAKIFEDLGREDLN-----VTSYHP 200 (340)
T ss_pred ecCcHHHhcCCCEEEEEcCCCCCchHHH-HHHHhhCCCCCEEecccc---CChHHHHHHHHhhCcccCC-----eeccCC
Confidence 3455688899999999999998888877 788999999999998733 333334444 4444543 443334
Q ss_pred C--CCCCCCCCCCceeecccCHHHHHHHHH
Q psy5266 118 L--PADHPLVQLDNCGNGLLDQEALVEFLR 145 (180)
Q Consensus 118 ~--~~~~~l~~~~Nv~~g~~~~~al~~~L~ 145 (180)
. |.+. ...=++.+.-++|++-+..+
T Consensus 201 aaVPgt~---~q~Yi~egyAtEEqI~klve 227 (340)
T TIGR01723 201 GCVPEMK---GQVYIAEGYASEEAVNKLYE 227 (340)
T ss_pred CCCCCCC---CceEeecccCCHHHHHHHHH
Confidence 2 2222 11123457888888766654
No 132
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=60.52 E-value=47 Score=24.12 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=39.8
Q ss_pred eccCHHHHhccCCEEEEccCCCCC--CcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCc
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKD--TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKI 105 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~--T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i 105 (180)
...+++++++++|+|++++|.... ..-.++.. .++++..++.++-..... .+.+.+++..+
T Consensus 71 ~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 71 AYLDLEELLAEADLIINTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALGA 133 (155)
T ss_pred eecchhhccccCCEEEeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence 456788889999999999997643 12233332 257788998886544332 66666665544
No 133
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=60.52 E-value=11 Score=31.89 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=28.7
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
....+.++.++.||+|+.+.|-+..+ -++..+ .+|+|+.+..++..
T Consensus 181 ~~~~~~~~av~~aDii~taT~s~~~~-P~~~~~---~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 181 VAVDSAEEAVRGADIIVTATPSTTPA-PVFDAE---WLKPGTHINAIGSY 226 (313)
T ss_dssp EEESSHHHHHTTSSEEEE----SSEE-ESB-GG---GS-TT-EEEE-S-S
T ss_pred eeccchhhhcccCCEEEEccCCCCCC-ccccHH---HcCCCcEEEEecCC
Confidence 45678999999999999997744322 677665 57899999888754
No 134
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=60.48 E-value=2.4 Score=33.61 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=41.1
Q ss_pred eccCHHHHhcc--CCEEEEccCCCCC---CcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhc
Q psy5266 40 LILVIRTRSAQ--SDFIFVTCALTKD---TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRD 102 (180)
Q Consensus 40 ~~~~l~~l~~~--~D~v~~h~pl~~~---T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~ 102 (180)
...++++++++ .|++.+++|.... ...+...+...-|....+.+++.|+.+++.++|...|+.
T Consensus 134 ~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 134 HIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 45678898865 9999999997643 122222222222444456678889988888877776653
No 135
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=60.10 E-value=16 Score=28.70 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=39.1
Q ss_pred eeeccCHHHHhccCCEEEEccCCC-----------CCCcceeC--H----------------------hHHhccCCCcEE
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALT-----------KDTEQLIG--R----------------------KQFSLMKPTAIL 82 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~-----------~~T~glIg--~----------------------~~i~~mk~g~~l 82 (180)
+....+++|.++.||||+..+--. +..+|+++ . +.+.++-|++++
T Consensus 61 v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~ 140 (183)
T PF02056_consen 61 VEATTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWL 140 (183)
T ss_dssp EEEESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred EEEeCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEE
Confidence 346779999999999999987643 45667776 1 222236679999
Q ss_pred EecCCCCccCHHHHHHHHh
Q psy5266 83 INTSRGGLLDQEALVEFLR 101 (180)
Q Consensus 83 vn~~Rg~~vd~~al~~~L~ 101 (180)
+|.+=..-+-.+++.+...
T Consensus 141 iNytNP~~~vt~a~~r~~~ 159 (183)
T PF02056_consen 141 INYTNPMGIVTEALSRYTP 159 (183)
T ss_dssp EE-SSSHHHHHHHHHHHST
T ss_pred EeccChHHHHHHHHHHhCC
Confidence 9986554444555554443
No 136
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=60.03 E-value=21 Score=26.08 Aligned_cols=46 Identities=7% Similarity=0.092 Sum_probs=32.6
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCc-EEEecCC
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTA-ILINTSR 87 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~-~lvn~~R 87 (180)
..+.++.+.+.++|+|+.+.|.... .+..+.+...++.. +++-.+.
T Consensus 64 ~~~~~~~~~~~~~DivI~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 64 IPLEDLEEALQEADIVINATPSGMP---IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp EEGGGHCHHHHTESEEEE-SSTTST---SSTHHHHTTTCHHCSEEEES-S
T ss_pred eeHHHHHHHHhhCCeEEEecCCCCc---ccCHHHHHHHHhhhhceecccc
Confidence 4677788889999999999885543 88888888876533 6665543
No 137
>PRK07589 ornithine cyclodeaminase; Validated
Probab=59.93 E-value=23 Score=30.56 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=31.7
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
...++++.+++||+|+.+.|- .++.-++..+ .+|+|+.+..++
T Consensus 183 ~~~~~~~av~~ADIIvtaT~S-~~~~Pvl~~~---~lkpG~hV~aIG 225 (346)
T PRK07589 183 ACRSVAEAVEGADIITTVTAD-KTNATILTDD---MVEPGMHINAVG 225 (346)
T ss_pred EeCCHHHHHhcCCEEEEecCC-CCCCceecHH---HcCCCcEEEecC
Confidence 457899999999999999872 2323566654 458898887654
No 138
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=59.29 E-value=6.5 Score=32.56 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=38.9
Q ss_pred HHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE-ecCCCCccCHHHHHHHHhc
Q psy5266 46 TRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI-NTSRGGLLDQEALVEFLRD 102 (180)
Q Consensus 46 ~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv-n~~Rg~~vd~~al~~~L~~ 102 (180)
+.++.||+|+.++|-.++....+-.+....++++++++ |++.- ....+.+.++.
T Consensus 79 ~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~ 133 (295)
T PLN02545 79 EELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR 133 (295)
T ss_pred HHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence 56799999999999887776666666666688888776 55443 45566666654
No 139
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=58.99 E-value=28 Score=28.60 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=32.6
Q ss_pred HHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC
Q psy5266 44 IRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 89 (180)
Q Consensus 44 l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~ 89 (180)
=.+++++||+|...=. +++.+.++-|++++.++|.+--.
T Consensus 22 g~~ll~~advviYAGS-------LV~~elL~~~~~~aei~nSa~~t 60 (254)
T COG2875 22 GQRLLEKADVVIYAGS-------LVPPELLEYCRPDAEIVNSASLT 60 (254)
T ss_pred HHHHHhhCCEEEECCC-------cCCHHHHhhcCCCCEEEecCcCC
Confidence 3588999999998744 67899999999999999986544
No 140
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.30 E-value=5.7 Score=33.38 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=30.2
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.++++..++||+|+..++-. +++.... +|+|+++|.++
T Consensus 193 ~~l~~~~~~ADIVI~avg~~----~~v~~~~---ik~GavVIDvg 230 (284)
T PRK14179 193 RNLAEVARKADILVVAIGRG----HFVTKEF---VKEGAVVIDVG 230 (284)
T ss_pred CCHHHHHhhCCEEEEecCcc----ccCCHHH---ccCCcEEEEec
Confidence 47999999999999999854 3455443 89999998875
No 141
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=58.06 E-value=75 Score=27.02 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=59.7
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHH---hcCCcceEEeecCCCCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL---RDKKIGGAGLDVMIPEP 117 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L---~~~~i~~~~lDv~~~ep 117 (180)
..+-.|-.+.+|++.+.+|.-+.|.++| +..+..++.|+++-|+=- +....|.+.| +..|+. |+.--|
T Consensus 132 tsDD~EAvk~aei~I~ftPfG~~t~~Ii-kki~~~ipEgAII~~tCT---Ipt~~ly~~le~l~R~Dvg-----IsS~HP 202 (342)
T PRK00961 132 TTDDREAVADADIVITWLPKGGMQPDII-EKFADDIKEGAIVTHACT---IPTTKFAKIFKDLGRDDLN-----VTSYHP 202 (342)
T ss_pred ecCcHHHhcCCCEEEEecCCCCCchHHH-HHHHhhCCCCCEEecccc---CCHHHHHHHHHHhCcccCC-----eeccCC
Confidence 3455688899999999999998888887 778999999999998733 3344444444 444442 443334
Q ss_pred C--CCCCCCCCCCceeecccCHHHHHHHHH
Q psy5266 118 L--PADHPLVQLDNCGNGLLDQEALVEFLR 145 (180)
Q Consensus 118 ~--~~~~~l~~~~Nv~~g~~~~~al~~~L~ 145 (180)
. |.+. ...-...+.-++|++-+..+
T Consensus 203 aaVPgt~---Gq~~i~egyAtEEqI~klve 229 (342)
T PRK00961 203 GAVPEMK---GQVYIAEGYADEEAVEKLYE 229 (342)
T ss_pred CCCCCCC---CceecccccCCHHHHHHHHH
Confidence 2 3222 11111235777777666554
No 142
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.85 E-value=16 Score=30.77 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=32.3
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 89 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~ 89 (180)
.+|++..++||+|+.++.- -+++..+.+ |+|+++|.++-..
T Consensus 190 ~~l~~~~~~ADIvIsAvGk----p~~i~~~~v---k~GavVIDVGin~ 230 (287)
T PRK14173 190 QDLPAVTRRADVLVVAVGR----PHLITPEMV---RPGAVVVDVGINR 230 (287)
T ss_pred CCHHHHHhhCCEEEEecCC----cCccCHHHc---CCCCEEEEccCcc
Confidence 4799999999999999863 267776654 8899999886544
No 143
>PRK06823 ornithine cyclodeaminase; Validated
Probab=57.78 E-value=23 Score=29.98 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=33.8
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
...+.++.++.||+|+.+.| .+.-++..+ .+|+|+.+..++-
T Consensus 182 ~~~~~~~av~~ADIV~taT~---s~~P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 182 TTLDAAEVAHAANLIVTTTP---SREPLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred EECCHHHHhcCCCEEEEecC---CCCceeCHH---HcCCCcEEEecCC
Confidence 35689999999999999966 666888765 4689999988863
No 144
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=57.66 E-value=1.5 Score=36.19 Aligned_cols=75 Identities=8% Similarity=0.022 Sum_probs=41.8
Q ss_pred cCCccccc-----eeeeEEEeccccccCCc----ccee-eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266 11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVY-LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTA 80 (180)
Q Consensus 11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~-~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~ 80 (180)
+|.||+.. --|..+..||.+..... .+.. ...+..+.+++||+|++++|... ...++ .+....+++++
T Consensus 8 ~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~~~l~~~~ 85 (279)
T PRK07417 8 LGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLIPALPPEA 85 (279)
T ss_pred ecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHHHhCCCCc
Confidence 57777761 01345677776543211 1111 12222356789999999999542 22222 33445578888
Q ss_pred EEEecCC
Q psy5266 81 ILINTSR 87 (180)
Q Consensus 81 ~lvn~~R 87 (180)
+++.++.
T Consensus 86 ii~d~~S 92 (279)
T PRK07417 86 IVTDVGS 92 (279)
T ss_pred EEEeCcc
Confidence 8887654
No 145
>PRK06199 ornithine cyclodeaminase; Validated
Probab=57.30 E-value=27 Score=30.46 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=35.3
Q ss_pred eeeccCHHHHhccCCEEEEccCCCC---CCcceeCHhHHhccCCCcEEEecCC
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALTK---DTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~~---~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
+....+.++.++.||+|+.+.+-+. .+..++..+ .+|+|+.++..+.
T Consensus 211 v~~~~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~~~---~lkpG~hv~~ig~ 260 (379)
T PRK06199 211 VEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVKRE---WVKPGAFLLMPAA 260 (379)
T ss_pred EEEeCCHHHHHcCCCEEEEccCCCCCCCCcCcEecHH---HcCCCcEEecCCc
Confidence 3346789999999999999987543 456888765 4578988876654
No 146
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.03 E-value=28 Score=29.32 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=31.0
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
.+|++..++||||+..+.-- ++|..+. .|+|+++|+++-.
T Consensus 192 ~~l~~~~~~ADIvI~AvG~~----~~i~~~~---vk~GavVIDvGin 231 (284)
T PRK14170 192 KDLPQVAKEADILVVATGLA----KFVKKDY---IKPGAIVIDVGMD 231 (284)
T ss_pred CCHHHHHhhCCEEEEecCCc----CccCHHH---cCCCCEEEEccCc
Confidence 47999999999999998733 4666554 5789999887643
No 147
>PRK06046 alanine dehydrogenase; Validated
Probab=56.98 E-value=28 Score=29.48 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=31.2
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
...+++++++ +|+|+++.|- +..++..+. +|+|+.+..++
T Consensus 184 ~~~~~~~~l~-aDiVv~aTps---~~P~~~~~~---l~~g~hV~~iG 223 (326)
T PRK06046 184 VAEDIEEACD-CDILVTTTPS---RKPVVKAEW---IKEGTHINAIG 223 (326)
T ss_pred EeCCHHHHhh-CCEEEEecCC---CCcEecHHH---cCCCCEEEecC
Confidence 3568999997 9999999884 457777664 48898887775
No 148
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=56.63 E-value=6.8 Score=34.46 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=33.3
Q ss_pred ccCCEEEEccCCCCCCcceeC--------HhHHhccCCCcEEEecCCCCccCHHHHHHHHhc
Q psy5266 49 AQSDFIFVTCALTKDTEQLIG--------RKQFSLMKPTAILINTSRGGLLDQEALVEFLRD 102 (180)
Q Consensus 49 ~~~D~v~~h~pl~~~T~glIg--------~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~ 102 (180)
+.||+|++++|-.....|-.+ .+....+++|+++|..+--..-..+.+...+.+
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 379999999996422112222 233345888999998766555555556555544
No 149
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=56.42 E-value=36 Score=29.26 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=34.6
Q ss_pred eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
.....+.++.++.||+|+-+.|.+. -++..+.+ |+|..+..++-
T Consensus 183 v~a~~s~~~av~~aDiIvt~T~s~~---Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 183 VGAADSAEEAVEGADIVVTATPSTE---PVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred ceeccCHHHHhhcCCEEEEecCCCC---CeecHhhc---CCCcEEEecCC
Confidence 3467799999999999999988554 67766654 58989888763
No 150
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=55.02 E-value=36 Score=31.04 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=45.7
Q ss_pred HHHhccCCEEE-EccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCC
Q psy5266 45 RTRSAQSDFIF-VTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIP 115 (180)
Q Consensus 45 ~~l~~~~D~v~-~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ 115 (180)
+|++ +||+|. +.-| ..+.+++||+|.+++..-.-. ...++.+.|.+..+...++|....
T Consensus 61 ~~v~-~~diilkV~~P---------~~~e~~~l~~g~~li~~l~p~--~~~~l~~~l~~~~it~ia~e~vpr 120 (509)
T PRK09424 61 AAVW-QSDIILKVNAP---------SDDEIALLREGATLVSFIWPA--QNPELLEKLAARGVTVLAMDAVPR 120 (509)
T ss_pred cccc-cCCEEEEeCCC---------CHHHHHhcCCCCEEEEEeCcc--cCHHHHHHHHHcCCEEEEeecccc
Confidence 4788 799998 6666 336689999999999875432 246788888999999999988753
No 151
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.90 E-value=19 Score=30.27 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.5
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
.+|++.+++||+|+..++- .++|..+. +|+|+++|.++-
T Consensus 193 ~~l~~~~~~ADIVIsAvg~----p~~i~~~~---vk~gavVIDvGi 231 (286)
T PRK14175 193 KDMASYLKDADVIVSAVGK----PGLVTKDV---VKEGAVIIDVGN 231 (286)
T ss_pred hhHHHHHhhCCEEEECCCC----CcccCHHH---cCCCcEEEEcCC
Confidence 4799999999999999984 34677764 688999988754
No 152
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=54.65 E-value=23 Score=27.79 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=54.6
Q ss_pred cCCcccc-----ceeeeEEEeccccccCCc---cc-eeeccCHHHHhc-cCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266 11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQ-VYLILVIRTRSA-QSDFIFVTCALTKDTEQLIGRKQFSLMKPTA 80 (180)
Q Consensus 11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~-~~~~~~l~~l~~-~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~ 80 (180)
.|++|+. +-.|+++..+|.+..... +. -....+.++++. +||+++-+.. .++|+.+.+.+|+..
T Consensus 36 ~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~I~~~~~~~l~~~- 109 (200)
T cd01075 36 LGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGVINDDTIPQLKAK- 109 (200)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccccCHHHHHHcCCC-
Confidence 4666664 236788888887654211 11 112334566775 7999985543 379999999999854
Q ss_pred EEEecCCCCccCHHHHHHHHhcCCc
Q psy5266 81 ILINTSRGGLLDQEALVEFLRDKKI 105 (180)
Q Consensus 81 ~lvn~~Rg~~vd~~al~~~L~~~~i 105 (180)
.++..+=+.+-+ ..-.+.|++..|
T Consensus 110 ~v~~~AN~~~~~-~~~~~~L~~~Gi 133 (200)
T cd01075 110 AIAGAANNQLAD-PRHGQMLHERGI 133 (200)
T ss_pred EEEECCcCccCC-HhHHHHHHHCCC
Confidence 455444455444 556667777766
No 153
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=54.61 E-value=58 Score=26.82 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=42.3
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 117 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep 117 (180)
.++ +.+++||+|+.++|-..+...-+=...-..++++++++....+ +....+.+.+.... ..+++-.+.+.|
T Consensus 78 ~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~~-r~ig~hf~~P~~ 149 (291)
T PRK06035 78 TSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERKD-RFIGMHWFNPAP 149 (291)
T ss_pred CCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCcc-cEEEEecCCCcc
Confidence 345 5678999999999865432222222233447778888766555 45667777665432 344554554333
No 154
>PRK08618 ornithine cyclodeaminase; Validated
Probab=54.43 E-value=22 Score=30.11 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=32.3
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
.+.++++.+++||+|+.+.|.. .-+|. +.+|+|+.++.++.
T Consensus 182 ~~~~~~~~~~~aDiVi~aT~s~---~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 182 VVNSADEAIEEADIIVTVTNAK---TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred EeCCHHHHHhcCCEEEEccCCC---CcchH----HhcCCCcEEEecCC
Confidence 4678999999999999998844 45664 56699999987753
No 155
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=54.43 E-value=20 Score=28.96 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=41.2
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDK 103 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~ 103 (180)
...+.++++++||+|++++| ......++.. + .++++.++|.+. .-+..+.|.+.++.+
T Consensus 51 ~~~~~~~~~~~aDvVilav~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 51 IAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred EeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 45688899999999999999 4334444432 2 356788888865 347788888888764
No 156
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.11 E-value=18 Score=30.33 Aligned_cols=39 Identities=21% Similarity=0.455 Sum_probs=30.9
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
.+|++..++||+|+.++.-- ++|+.+ .+|+|+++|+++-
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p----~~i~~~---~vk~GavVIDvGi 229 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVP----HFIGAD---AVKPGAVVIDVGI 229 (282)
T ss_pred CCHHHHHhhCCEEEEccCCc----CccCHH---HcCCCcEEEEeec
Confidence 47999999999999998743 567766 4678999988753
No 157
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=54.08 E-value=16 Score=32.73 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=50.3
Q ss_pred eeeccCHHHHhccCCEEEEccCCC-----------CCCcceeCHhHHh----------------------ccCCCcEEEe
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALT-----------KDTEQLIGRKQFS----------------------LMKPTAILIN 84 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~-----------~~T~glIg~~~i~----------------------~mk~g~~lvn 84 (180)
+....++++.++.||||+.+.-.- |..+|+++.+..+ ++-|+++++|
T Consensus 65 v~~ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lN 144 (442)
T COG1486 65 VEATTDRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLN 144 (442)
T ss_pred EEEecCHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEe
Confidence 356779999999999999887542 4567777754433 2668999999
Q ss_pred cCCCCccCHHHHHHHHhcCCcceE
Q psy5266 85 TSRGGLLDQEALVEFLRDKKIGGA 108 (180)
Q Consensus 85 ~~Rg~~vd~~al~~~L~~~~i~~~ 108 (180)
.+=..-+..+++.+....-++++.
T Consensus 145 ytNP~~~vTeAv~r~~~~~K~VGl 168 (442)
T COG1486 145 YTNPAAIVTEAVRRLYPKIKIVGL 168 (442)
T ss_pred ccChHHHHHHHHHHhCCCCcEEee
Confidence 876666667777776663255443
No 158
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.01 E-value=20 Score=30.22 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=31.3
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
..+|++..++||+|+.++.-- ++|..+. .|+|+++|+++-
T Consensus 191 T~~l~~~~~~ADIvV~AvG~p----~~i~~~~---ik~GavVIDvGi 230 (287)
T PRK14181 191 SENLTEILKTADIIIAAIGVP----LFIKEEM---IAEKAVIVDVGT 230 (287)
T ss_pred CCCHHHHHhhCCEEEEccCCc----CccCHHH---cCCCCEEEEecc
Confidence 357999999999999998733 5676655 578999988753
No 159
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=53.28 E-value=21 Score=30.25 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=30.9
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
..+|++..++||+|+.++.- -++|..+. .|+|+++|+++
T Consensus 201 T~nl~~~~~~ADIvv~AvGk----~~~i~~~~---vk~gavVIDvG 239 (299)
T PLN02516 201 TPDPESIVREADIVIAAAGQ----AMMIKGDW---IKPGAAVIDVG 239 (299)
T ss_pred CCCHHHHHhhCCEEEEcCCC----cCccCHHH---cCCCCEEEEee
Confidence 34799999999999999863 26777655 57899998875
No 160
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=51.89 E-value=1e+02 Score=27.29 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=50.1
Q ss_pred ccCHHHHhccCCEEEEccCCCCCC------ccee--CHhHHhccCCCcEEEecCCCCccCHHH-HHHHHhc-CCcc-eE-
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDT------EQLI--GRKQFSLMKPTAILINTSRGGLLDQEA-LVEFLRD-KKIG-GA- 108 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T------~glI--g~~~i~~mk~g~~lvn~~Rg~~vd~~a-l~~~L~~-~~i~-~~- 108 (180)
+.+-.+.+++||++++++|-..+. ..+. ..+....+++|.++|..+--..-..+. +...+++ ..+. +-
T Consensus 67 ~t~~~~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~ 146 (425)
T PRK15182 67 FTSEIEKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQD 146 (425)
T ss_pred EEeCHHHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCC
Confidence 334345688999999999955332 2222 123334588899999877655544444 3344443 1111 00
Q ss_pred EeecCCCCCCCC---CCCCCCCCceeec
Q psy5266 109 GLDVMIPEPLPA---DHPLVQLDNCGNG 133 (180)
Q Consensus 109 ~lDv~~~ep~~~---~~~l~~~~Nv~~g 133 (180)
-.=.+.+||... ...+.+.+.++.|
T Consensus 147 ~~~~~~PE~v~~G~a~~~~~~~~riv~G 174 (425)
T PRK15182 147 FYVGYSPERINPGDKKHRLTNIKKITSG 174 (425)
T ss_pred eeEeeCCCcCCCCcccccccCCCeEEEC
Confidence 001344566533 3445556666666
No 161
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=51.25 E-value=12 Score=32.13 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=42.2
Q ss_pred eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccC-----HHHHHHHHhcCCc
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD-----QEALVEFLRDKKI 105 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd-----~~al~~~L~~~~i 105 (180)
.....+|++.++.||+|++.+|-- ..+.++..-. ..+++++.+++++.|-..+ .+-+.+.|....+
T Consensus 59 l~at~Dl~~a~~~ad~iv~avPs~-~~r~v~~~l~-~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~ 129 (329)
T COG0240 59 LKATTDLAEALDGADIIVIAVPSQ-ALREVLRQLK-PLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPI 129 (329)
T ss_pred cccccCHHHHHhcCCEEEEECChH-HHHHHHHHHh-hhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeE
Confidence 345678999999999999999932 2222222211 3457799999999885433 2334455554443
No 162
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=51.06 E-value=23 Score=30.85 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=30.4
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
..+|++..++||||+.++.- -++|..+. .|+|+++|+++
T Consensus 265 T~nl~~~~r~ADIVIsAvGk----p~~i~~d~---vK~GAvVIDVG 303 (364)
T PLN02616 265 TKNPEEITREADIIISAVGQ----PNMVRGSW---IKPGAVVIDVG 303 (364)
T ss_pred CCCHHHHHhhCCEEEEcCCC----cCcCCHHH---cCCCCEEEecc
Confidence 35799999999999999863 34676655 57899998775
No 163
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.03 E-value=24 Score=29.64 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=31.2
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
..+|++..++||+|+.++.-- ++|..+. .|+|+++|+++-
T Consensus 193 T~~l~~~~~~ADIvIsAvGk~----~~i~~~~---ik~gavVIDvGi 232 (284)
T PRK14177 193 TQNLPSIVRQADIIVGAVGKP----EFIKADW---ISEGAVLLDAGY 232 (284)
T ss_pred CCCHHHHHhhCCEEEEeCCCc----CccCHHH---cCCCCEEEEecC
Confidence 357999999999999998733 5676554 578999998864
No 164
>PRK08291 ectoine utilization protein EutC; Validated
Probab=50.88 E-value=30 Score=29.31 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=29.2
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
...++++.+++||+|+.+.|. +.-+|..+. +|+|..+..+
T Consensus 187 ~~~d~~~al~~aDiVi~aT~s---~~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 187 VARDVHEAVAGADIIVTTTPS---EEPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred EeCCHHHHHccCCEEEEeeCC---CCcEecHHH---cCCCceEEee
Confidence 457899999999999999874 346776654 5677666543
No 165
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.69 E-value=27 Score=29.28 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=31.1
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
..+|.++.++||+|+..+.-- ++|..+. .|+|+++|+++
T Consensus 192 T~~l~~~~~~ADIvIsAvGkp----~~i~~~~---ik~gavVIDvG 230 (278)
T PRK14172 192 TKNLKEVCKKADILVVAIGRP----KFIDEEY---VKEGAIVIDVG 230 (278)
T ss_pred CCCHHHHHhhCCEEEEcCCCc----CccCHHH---cCCCcEEEEee
Confidence 347999999999999998743 5677665 68899998874
No 166
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.64 E-value=26 Score=29.70 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=31.1
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
.+|++..++||+|+.++.-- ++|..+. +|+|+++|+++-.
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp----~~i~~~~---ik~gavVIDvGin 232 (297)
T PRK14186 193 QDLASITREADILVAAAGRP----NLIGAEM---VKPGAVVVDVGIH 232 (297)
T ss_pred CCHHHHHhhCCEEEEccCCc----CccCHHH---cCCCCEEEEeccc
Confidence 47999999999999998732 4666554 5789999888643
No 167
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=49.16 E-value=80 Score=28.03 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=46.4
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc--------cCCCcEEEecCCCCccCHHHHHHHHhcCC
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL--------MKPTAILINTSRGGLLDQEALVEFLRDKK 104 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~--------mk~g~~lvn~~Rg~~vd~~al~~~L~~~~ 104 (180)
....+.++-++.||++++++|-..+..|-+|-..+.. ++..+++|+-|-=.+=..+.+.+.+.+..
T Consensus 65 ~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 65 RFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 3456788999999999999997766688888766653 55557777765544445566666555444
No 168
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=49.11 E-value=30 Score=28.84 Aligned_cols=58 Identities=28% Similarity=0.314 Sum_probs=30.4
Q ss_pred ccCCEEEEccCCCCCCcceeCHhHHh-----------------ccCCCcEEEecCCCCccCHHHHHHHHhcCC-cceEE
Q psy5266 49 AQSDFIFVTCALTKDTEQLIGRKQFS-----------------LMKPTAILINTSRGGLLDQEALVEFLRDKK-IGGAG 109 (180)
Q Consensus 49 ~~~D~v~~h~pl~~~T~glIg~~~i~-----------------~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~-i~~~~ 109 (180)
.-+|+|+.|+.+|.. |.+|.+... +.+++. ++-+-=|.+-+.++....|++.+ +.++.
T Consensus 169 AGaDiiv~H~GlT~g--G~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~di-i~l~hGGPI~~p~D~~~~l~~t~~~~Gf~ 244 (268)
T PF09370_consen 169 AGADIIVAHMGLTTG--GSIGAKTALSLEEAAERIQEIFDAARAVNPDI-IVLCHGGPIATPEDAQYVLRNTKGIHGFI 244 (268)
T ss_dssp HT-SEEEEE-SS------------S--HHHHHHHHHHHHHHHHCC-TT--EEEEECTTB-SHHHHHHHHHH-TTEEEEE
T ss_pred cCCCEEEecCCccCC--CCcCccccCCHHHHHHHHHHHHHHHHHhCCCe-EEEEeCCCCCCHHHHHHHHhcCCCCCEEe
Confidence 489999999999844 555554221 256664 44444567888999999999998 65543
No 169
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.96 E-value=27 Score=29.40 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=31.9
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
..+|++..++||+|+.++.-- ++|..+. +|+|+++|+++-.
T Consensus 194 T~~l~~~~k~ADIvV~AvGkp----~~i~~~~---ik~GavVIDvGin 234 (284)
T PRK14193 194 TRDLAAHTRRADIIVAAAGVA----HLVTADM---VKPGAAVLDVGVS 234 (284)
T ss_pred CCCHHHHHHhCCEEEEecCCc----CccCHHH---cCCCCEEEEcccc
Confidence 357999999999999998733 4676655 5789999888644
No 170
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.84 E-value=28 Score=30.10 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=30.4
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
..++++..++||||+.++.-- ++|..+. +|+|+++|+++
T Consensus 248 T~nl~~~~~~ADIvIsAvGkp----~~v~~d~---vk~GavVIDVG 286 (345)
T PLN02897 248 TKDPEQITRKADIVIAAAGIP----NLVRGSW---LKPGAVVIDVG 286 (345)
T ss_pred CCCHHHHHhhCCEEEEccCCc----CccCHHH---cCCCCEEEEcc
Confidence 357999999999999998733 4666554 57899998875
No 171
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=46.82 E-value=48 Score=28.07 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=31.6
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
...++++.+++||+|+.+.|. +.-+|..+. +|+|..+..++
T Consensus 184 ~~~~~~~av~~aDiVvtaT~s---~~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 184 AATDPRAAMSGADIIVTTTPS---ETPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred EeCCHHHHhccCCEEEEecCC---CCcEecHHH---cCCCcEEEeeC
Confidence 357899999999999999874 446777654 67888877664
No 172
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.61 E-value=30 Score=29.14 Aligned_cols=39 Identities=10% Similarity=0.254 Sum_probs=30.9
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
..+|++..++||+|+.++.-- ++|..+. .|+|+++|.++
T Consensus 193 T~~L~~~~~~ADIvV~AvGkp----~~i~~~~---vk~GavVIDvG 231 (288)
T PRK14171 193 THNLSSITSKADIVVAAIGSP----LKLTAEY---FNPESIVIDVG 231 (288)
T ss_pred CCCHHHHHhhCCEEEEccCCC----CccCHHH---cCCCCEEEEee
Confidence 357999999999999998722 5777665 57899998775
No 173
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.53 E-value=30 Score=29.10 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=30.9
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
..+|++..++||+|+.++.-- ++|..+. .|+|+++|.++
T Consensus 191 T~nl~~~~~~ADIvIsAvGkp----~~i~~~~---vk~GavVIDvG 229 (282)
T PRK14166 191 TKDLSLYTRQADLIIVAAGCV----NLLRSDM---VKEGVIVVDVG 229 (282)
T ss_pred CCCHHHHHhhCCEEEEcCCCc----CccCHHH---cCCCCEEEEec
Confidence 357999999999999998733 5677664 57899998876
No 174
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.13 E-value=31 Score=28.99 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=30.3
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.+|.+..++||+|+..+.-- ++|..+. .|+|+++|+++
T Consensus 193 ~dl~~~~k~ADIvIsAvGkp----~~i~~~~---vk~gavVIDvG 230 (282)
T PRK14180 193 TDLKSHTTKADILIVAVGKP----NFITADM---VKEGAVVIDVG 230 (282)
T ss_pred CCHHHHhhhcCEEEEccCCc----CcCCHHH---cCCCcEEEEec
Confidence 57999999999999998733 4576644 57899998875
No 175
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.11 E-value=31 Score=28.99 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=30.5
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.+|++..++||+|+..+.- .++|..+. .|+|+++|+++
T Consensus 192 ~nl~~~~~~ADIvI~AvGk----~~~i~~~~---ik~gaiVIDvG 229 (282)
T PRK14182 192 ADLAGEVGRADILVAAIGK----AELVKGAW---VKEGAVVIDVG 229 (282)
T ss_pred CCHHHHHhhCCEEEEecCC----cCccCHHH---cCCCCEEEEee
Confidence 4799999999999999873 45777665 57899998875
No 176
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.04 E-value=29 Score=29.33 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=30.3
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
..+|.+..++||+|+.++.-- ++|..+ ..|+|+++|+++
T Consensus 195 T~nl~~~~~~ADIvIsAvGkp----~~i~~~---~vk~gavVIDvG 233 (293)
T PRK14185 195 SKNLKKECLEADIIIAALGQP----EFVKAD---MVKEGAVVIDVG 233 (293)
T ss_pred CCCHHHHHhhCCEEEEccCCc----CccCHH---HcCCCCEEEEec
Confidence 347999999999999998733 456654 468899998775
No 177
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=45.41 E-value=15 Score=28.65 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=31.2
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
.-+.+|++.|||++-+.+-...-+-=++++.+.+.+|+.+.+.+
T Consensus 12 ~~l~~L~~~ADV~i~n~rpg~~~~lGl~~~~l~~~nP~LV~~~i 55 (191)
T PF02515_consen 12 AALRRLLATADVVIENFRPGVLERLGLDYEALRAINPRLVYCSI 55 (191)
T ss_dssp HHHHHHHHT-SEEEEESSTTHHHHTT-SHHHHHHH-TT-EEEEE
T ss_pred HHHHHHHHhCCEEEECCchhhhHhcCCCHHHHHhhCCCCeEEEE
Confidence 35889999999999998744333445788999999998888766
No 178
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=44.93 E-value=29 Score=30.90 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=45.1
Q ss_pred eeeccCHHHHhccCCEEEEccCCC-----------CCCcceeCHhH----------------------HhccCCCcEEEe
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALT-----------KDTEQLIGRKQ----------------------FSLMKPTAILIN 84 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~-----------~~T~glIg~~~----------------------i~~mk~g~~lvn 84 (180)
+....+++|.++.||||+..+--- +..+|++|.+. +.+..|++++||
T Consensus 62 v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin 141 (437)
T cd05298 62 FVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILN 141 (437)
T ss_pred EEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEE
Confidence 346678999999999999876643 33567766333 122557899999
Q ss_pred cCCCCccCHHHHHHHHhcCCcceE
Q psy5266 85 TSRGGLLDQEALVEFLRDKKIGGA 108 (180)
Q Consensus 85 ~~Rg~~vd~~al~~~L~~~~i~~~ 108 (180)
++-..-+-..++.+.+...++.+.
T Consensus 142 ~tNP~~~vt~~~~~~~~~~kviGl 165 (437)
T cd05298 142 YSNPAAIVAEALRRLFPNARILNI 165 (437)
T ss_pred ecCcHHHHHHHHHHHCCCCCEEEE
Confidence 865543444445544444455443
No 179
>PRK06141 ornithine cyclodeaminase; Validated
Probab=44.89 E-value=56 Score=27.47 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=29.8
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
...++++.+++||+|+.+.|- +.-++.. +.+|+|+++.-++
T Consensus 179 ~~~~~~~av~~aDIVi~aT~s---~~pvl~~---~~l~~g~~i~~ig 219 (314)
T PRK06141 179 VVTDLEAAVRQADIISCATLS---TEPLVRG---EWLKPGTHLDLVG 219 (314)
T ss_pred EeCCHHHHHhcCCEEEEeeCC---CCCEecH---HHcCCCCEEEeeC
Confidence 457899999999999877773 3566765 4568888665444
No 180
>PRK06444 prephenate dehydrogenase; Provisional
Probab=44.76 E-value=4.5 Score=32.08 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=23.2
Q ss_pred cCCccccceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCC
Q psy5266 11 TGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALT 61 (180)
Q Consensus 11 ~G~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~ 61 (180)
.|+.|+. |.......+..+. +++||+|++++|..
T Consensus 9 ~G~mG~~--~~~~~~~~g~~v~---------------~~~~DlVilavPv~ 42 (197)
T PRK06444 9 NGRLGRV--LCSILDDNGLGVY---------------IKKADHAFLSVPID 42 (197)
T ss_pred CCcHHHH--HHHHHHhCCCEEE---------------ECCCCEEEEeCCHH
Confidence 5777877 6655544433321 57999999999965
No 181
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=44.52 E-value=23 Score=27.52 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=36.9
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHh--------ccCCCcEEEecCCCCccCHH-HHHHHHhc
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFS--------LMKPTAILINTSRGGLLDQE-ALVEFLRD 102 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~--------~mk~g~~lvn~~Rg~~vd~~-al~~~L~~ 102 (180)
...+.++..++||++++++|--....+..|...+. .++++.++|.-+--..=..+ -+...|++
T Consensus 66 ~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 66 ATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp EESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence 45578888999999999998544445555554444 38888898886654443344 34444443
No 182
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=44.37 E-value=24 Score=30.36 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=33.7
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCc
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 90 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~ 90 (180)
....+++++++.||+|++.+|-. ..+.++ ...-..++++..+|+++.|--
T Consensus 71 ~at~dl~eal~~ADiIIlAVPs~-~i~~vl-~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIPHQ-FLEGIC-KQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred EEECCHHHHHhcCCEEEEECChH-HHHHHH-HHHHhhcCCCCEEEEEeCCcc
Confidence 34568999999999999999932 222222 112224677888999988843
No 183
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.52 E-value=22 Score=29.30 Aligned_cols=61 Identities=10% Similarity=0.052 Sum_probs=36.5
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhc
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRD 102 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~ 102 (180)
...++++.++.||+|+.++|-..+...-+=.+....++++++++.... .+....+.+.++.
T Consensus 74 ~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntS--t~~~~~~~~~~~~ 134 (287)
T PRK08293 74 LTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSS--TLLPSQFAEATGR 134 (287)
T ss_pred EeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcc--cCCHHHHHhhcCC
Confidence 456899999999999999995432222222233445777877743222 2344556665543
No 184
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=43.04 E-value=52 Score=30.03 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=43.4
Q ss_pred HHHhccCCEEE-EccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266 45 RTRSAQSDFIF-VTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI 114 (180)
Q Consensus 45 ~~l~~~~D~v~-~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~ 114 (180)
++++ +||+|. +.-| ..+.+++||+|.+++..-.-.. ..++.+.|.+..+...++|...
T Consensus 60 ~~~~-~adiIlkV~~P---------~~~e~~~l~~g~tli~~l~p~~--n~~ll~~l~~k~it~ia~E~vp 118 (511)
T TIGR00561 60 TLFW-QSDIILKVNAP---------SDAEIAELPAGKALVSFIWPAQ--NPELMEKLAAKNITVLAMDAVP 118 (511)
T ss_pred cchh-cCCEEEEeCCC---------CHHHHHhcCCCCEEEEEcCccC--CHHHHHHHHHcCCEEEEeeccc
Confidence 5665 799997 6666 2266899999999998865332 4667778888889999988654
No 185
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.66 E-value=35 Score=28.77 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=30.6
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 87 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R 87 (180)
..+|++..++||+|+.++--- ++|..+ .+|+|+++|+++-
T Consensus 198 T~~l~~~~~~ADIvv~AvG~p----~~i~~~---~vk~gavVIDvGi 237 (287)
T PRK14176 198 TDDLKKYTLDADILVVATGVK----HLIKAD---MVKEGAVIFDVGI 237 (287)
T ss_pred CCCHHHHHhhCCEEEEccCCc----cccCHH---HcCCCcEEEEecc
Confidence 357999999999999865532 467655 6788999988763
No 186
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.32 E-value=24 Score=29.16 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=35.3
Q ss_pred ccCHHHHhccCCEEEEccCCCCCC-cceeCHhHHhccCCCcEEE-ecCCCCccCHHHHHHHHh
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDT-EQLIGRKQFSLMKPTAILI-NTSRGGLLDQEALVEFLR 101 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T-~glIg~~~i~~mk~g~~lv-n~~Rg~~vd~~al~~~L~ 101 (180)
..++++ +++||+|+.++|-..+. ..++ .+....++++++++ |++-- +..++.+.+.
T Consensus 75 ~~~~~~-~~~aD~Vieavpe~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~---~~s~la~~~~ 132 (292)
T PRK07530 75 ATDLED-LADCDLVIEAATEDETVKRKIF-AQLCPVLKPEAILATNTSSI---SITRLASATD 132 (292)
T ss_pred eCCHHH-hcCCCEEEEcCcCCHHHHHHHH-HHHHhhCCCCcEEEEcCCCC---CHHHHHhhcC
Confidence 456654 78999999999965442 2333 34555688888887 44432 2345666553
No 187
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.95 E-value=37 Score=28.51 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=29.9
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.+|++..++||+|+.++.- -++|..+. .|+|+++|+++
T Consensus 192 ~~l~~~~~~ADIvV~AvGk----p~~i~~~~---vk~gavvIDvG 229 (281)
T PRK14183 192 KDLKAHTKKADIVIVGVGK----PNLITEDM---VKEGAIVIDIG 229 (281)
T ss_pred cCHHHHHhhCCEEEEecCc----ccccCHHH---cCCCcEEEEee
Confidence 4799999999999999863 35666554 57899998876
No 188
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.85 E-value=41 Score=28.48 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=29.7
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.+|++..++||+|+.++.-- ++|..+. .|+|+++|+++
T Consensus 200 ~~l~~~~~~ADIvVsAvGkp----~~i~~~~---ik~gavVIDvG 237 (297)
T PRK14168 200 KNLARHCQRADILIVAAGVP----NLVKPEW---IKPGATVIDVG 237 (297)
T ss_pred cCHHHHHhhCCEEEEecCCc----CccCHHH---cCCCCEEEecC
Confidence 47999999999999987522 4566554 57899999886
No 189
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.83 E-value=39 Score=28.61 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=30.1
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.+|++..++||+|+.++.-- ++|..+.+ |+|+++|+++
T Consensus 195 ~~l~~~~~~ADIvVsAvGkp----~~i~~~~i---k~gaiVIDVG 232 (294)
T PRK14187 195 RDLADYCSKADILVAAVGIP----NFVKYSWI---KKGAIVIDVG 232 (294)
T ss_pred CCHHHHHhhCCEEEEccCCc----CccCHHHc---CCCCEEEEec
Confidence 47999999999999998733 46766654 6899998874
No 190
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=41.33 E-value=10 Score=29.36 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=28.0
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCccee-CHhHHhccCCCcEEEecCCC
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLI-GRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glI-g~~~i~~mk~g~~lvn~~Rg 88 (180)
++..+..|..++||+|.+.+|-. ...-+ ..+....||+|..++ ++.|
T Consensus 49 f~v~~~~eAv~~aDvV~~L~PD~--~q~~vy~~~I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 49 FEVMSVAEAVKKADVVMLLLPDE--VQPEVYEEEIAPNLKPGATLV-FAHG 96 (165)
T ss_dssp -ECCEHHHHHHC-SEEEE-S-HH--HHHHHHHHHHHHHS-TT-EEE-ESSS
T ss_pred CeeccHHHHHhhCCEEEEeCChH--HHHHHHHHHHHhhCCCCCEEE-eCCc
Confidence 57789999999999999999932 22333 344444799987665 3455
No 191
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=40.84 E-value=5.5 Score=32.03 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=38.0
Q ss_pred eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCC-----CC---c-------cCHHHHHHHHhcC
Q psy5266 39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR-----GG---L-------LDQEALVEFLRDK 103 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~R-----g~---~-------vd~~al~~~L~~~ 103 (180)
....+.++-.+.+|+|++.+|+.. ..+.+ ++....+. |.++|.+.= ++ . -..+.+.+++.+.
T Consensus 49 i~~~~~~dA~~~aDVVvLAVP~~a-~~~v~-~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a 125 (211)
T COG2085 49 ITGGSNEDAAALADVVVLAVPFEA-IPDVL-AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA 125 (211)
T ss_pred cccCChHHHHhcCCEEEEeccHHH-HHhHH-HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc
Confidence 345678889999999999999762 11111 22222233 556654321 21 1 1134577788888
Q ss_pred Ccce
Q psy5266 104 KIGG 107 (180)
Q Consensus 104 ~i~~ 107 (180)
+++.
T Consensus 126 kVVk 129 (211)
T COG2085 126 KVVK 129 (211)
T ss_pred chhh
Confidence 7743
No 192
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=40.56 E-value=22 Score=29.36 Aligned_cols=76 Identities=9% Similarity=0.107 Sum_probs=48.9
Q ss_pred EEEeccccccCC---c--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHH
Q psy5266 23 VLIRYHVDLTGG---S--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 97 (180)
Q Consensus 23 ~~~~~~~~~~~~---~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~ 97 (180)
.+..++++.... . .+.....+.++++.+||+|++++| ......++ .+.-..++++.++|.+.-| ++.+.|.
T Consensus 31 ~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl-~~l~~~~~~~~lvISi~AG--i~i~~l~ 106 (272)
T PRK12491 31 QIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI-NQIKDQIKNDVIVVTIAAG--KSIKSTE 106 (272)
T ss_pred eEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-HHHHHhhcCCcEEEEeCCC--CcHHHHH
Confidence 366676554421 1 122344578889999999999999 34555555 2333346778888877544 5677888
Q ss_pred HHHhc
Q psy5266 98 EFLRD 102 (180)
Q Consensus 98 ~~L~~ 102 (180)
+.+..
T Consensus 107 ~~l~~ 111 (272)
T PRK12491 107 NEFDR 111 (272)
T ss_pred HhcCC
Confidence 87754
No 193
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=40.30 E-value=11 Score=32.07 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=25.5
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhcc-CCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLM-KPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~m-k~g~~lvn~~ 86 (180)
.+.+++++++|++++++|-. ...+...++ +.|+++|..+
T Consensus 41 ~~~~~~~~~~D~vFlalp~~------~s~~~~~~~~~~g~~VIDlS 80 (310)
T TIGR01851 41 AERAKLLNAADVAILCLPDD------AAREAVSLVDNPNTCIIDAS 80 (310)
T ss_pred CCHhHhhcCCCEEEECCCHH------HHHHHHHHHHhCCCEEEECC
Confidence 45678889999999999943 333444443 3366666554
No 194
>KOG3045|consensus
Probab=40.22 E-value=53 Score=27.72 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=44.4
Q ss_pred ccCCEEEEccCCCCCCcceeCHhHHhccCC-CcEEEecCCCCccCHHHHHHHHhcCCcc
Q psy5266 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKP-TAILINTSRGGLLDQEALVEFLRDKKIG 106 (180)
Q Consensus 49 ~~~D~v~~h~pl~~~T~glIg~~~i~~mk~-g~~lvn~~Rg~~vd~~al~~~L~~~~i~ 106 (180)
+.+||+++|+.|++.+..-+=.+.-.-||+ |.+-|.--++...|...+.++|...-+-
T Consensus 227 ~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 227 ESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFD 285 (325)
T ss_pred CcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCe
Confidence 579999999999988776665665556898 6666766677778888888888775553
No 195
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=40.15 E-value=76 Score=25.44 Aligned_cols=54 Identities=7% Similarity=0.025 Sum_probs=38.1
Q ss_pred CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcC
Q psy5266 43 VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDK 103 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~ 103 (180)
+|.+.++++|+|+-..| .|+++.+.++.|+++.+++-.+... .+.-++++.+.+
T Consensus 90 ~l~~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~g 143 (226)
T cd05311 90 TLKEALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAG 143 (226)
T ss_pred CHHHHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcC
Confidence 68788889999998876 5889999999999877776665322 343444444443
No 196
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=40.14 E-value=1.2e+02 Score=24.63 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=57.5
Q ss_pred eeeEEEeccccccCCcc----cee-eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHH
Q psy5266 20 IVCVLIRYHVDLTGGSK----QVY-LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 94 (180)
Q Consensus 20 ~~~~~~~~~~~~~~~~~----~~~-~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~ 94 (180)
+...+.+||.+...... +.. ...+-.+.++++|+|++++|... +..++. +....++++++++.++.-..--.+
T Consensus 10 ~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~-~~~~l~-~~~~~~~~~~iv~Dv~SvK~~~~~ 87 (258)
T PF02153_consen 10 PDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA-IEDVLE-EIAPYLKPGAIVTDVGSVKAPIVE 87 (258)
T ss_dssp TTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH-HHHHHH-HHHCGS-TTSEEEE--S-CHHHHH
T ss_pred CCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH-HHHHHH-HhhhhcCCCcEEEEeCCCCHHHHH
Confidence 34677788877764221 111 22222677899999999999652 333332 223348889999988665544455
Q ss_pred HHHHHHhcCCcceEEe-ecCCCCCC---CCCCCCCCCCceeec
Q psy5266 95 ALVEFLRDKKIGGAGL-DVMIPEPL---PADHPLVQLDNCGNG 133 (180)
Q Consensus 95 al~~~L~~~~i~~~~l-Dv~~~ep~---~~~~~l~~~~Nv~~g 133 (180)
++.+.+.. ++.+++. +.+-.|-- ..+..++.-.|+++.
T Consensus 88 ~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~ 129 (258)
T PF02153_consen 88 AMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILC 129 (258)
T ss_dssp HHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEE
T ss_pred HHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEe
Confidence 67777772 2322222 34333211 124456666677775
No 197
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.62 E-value=45 Score=27.91 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.5
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
+..+|.+.+++||+|+.+++ .+ ++|..+. +|+|++++++.
T Consensus 192 ~t~~L~~~~~~aDIvI~AtG-~~---~~v~~~~---lk~gavViDvg 231 (283)
T PRK14192 192 RTQNLPELVKQADIIVGAVG-KP---ELIKKDW---IKQGAVVVDAG 231 (283)
T ss_pred CchhHHHHhccCCEEEEccC-CC---CcCCHHH---cCCCCEEEEEE
Confidence 34578999999999999996 22 2677654 78899998764
No 198
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=39.43 E-value=29 Score=28.84 Aligned_cols=75 Identities=9% Similarity=0.088 Sum_probs=44.0
Q ss_pred cCCccccc-------eeeeEEEeccccccCCc----cc--eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccC
Q psy5266 11 TGTPGQVH-------LIVCVLIRYHVDLTGGS----KQ--VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMK 77 (180)
Q Consensus 11 ~G~iG~~~-------~~~~~~~~~~~~~~~~~----~~--~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk 77 (180)
.|.+|... ++...+..|+++..... .+ .....++++.+++||+|++++|.. .+..++ ......++
T Consensus 14 ~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~-~~l~~~l~ 91 (307)
T PRK07502 14 IGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA-AEIAPHLK 91 (307)
T ss_pred eCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-HHHHhhCC
Confidence 56777651 12235667766543100 01 112357888899999999999963 222222 23345678
Q ss_pred CCcEEEecCC
Q psy5266 78 PTAILINTSR 87 (180)
Q Consensus 78 ~g~~lvn~~R 87 (180)
++.+++.++.
T Consensus 92 ~~~iv~dvgs 101 (307)
T PRK07502 92 PGAIVTDVGS 101 (307)
T ss_pred CCCEEEeCcc
Confidence 8888887744
No 199
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=38.69 E-value=49 Score=27.33 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=34.7
Q ss_pred HHHHHHHHHccccccccccCCCCCCCCCCCCcc--cCCcEEEcCC
Q psy5266 137 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV--QLDNCEIRGG 179 (180)
Q Consensus 137 ~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~--~~~nv~it~~ 179 (180)
.+++...|+-++++=-+=|..+-.|....+||+ ++|+|+++|.
T Consensus 167 l~~me~~L~wrHlaPTaPDTL~~yP~~~~Dpfvi~~~PhVyf~Gn 211 (257)
T cd07387 167 LDILERTLKWRHIAPTAPDTLWCYPFTDRDPFILEECPHVYFAGN 211 (257)
T ss_pred HHHHHHHHHhcccCCCCCCccccccCCCCCceeecCCCCEEEeCC
Confidence 356777788899987788888777877778876 7899999995
No 200
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=37.65 E-value=21 Score=23.84 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=15.5
Q ss_pred cCHHHHhccCCEEEEccCCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALT 61 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~ 61 (180)
.+..+++++||+|++++|-.
T Consensus 53 ~~~~~~~~~advvilav~p~ 72 (96)
T PF03807_consen 53 DDNEEAAQEADVVILAVKPQ 72 (96)
T ss_dssp EEHHHHHHHTSEEEE-S-GG
T ss_pred CChHHhhccCCEEEEEECHH
Confidence 37999999999999999943
No 201
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.30 E-value=53 Score=27.80 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=29.5
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.+|++..++||+|+.++--- ++|..+. .|+|+++|+++
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp----~~i~~~~---ik~gaiVIDvG 233 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVP----ELIDGSM---LSEGATVIDVG 233 (297)
T ss_pred CCHHHHHhhCCEEEEccCCc----CccCHHH---cCCCCEEEEcc
Confidence 47999999999999976522 4676644 67899998876
No 202
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=35.39 E-value=1.5e+02 Score=21.76 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=35.5
Q ss_pred CHHHHhccCCEEEEccCC---CCCCcceeCHhHHhccCCCcEEEecCCCCccC
Q psy5266 43 VIRTRSAQSDFIFVTCAL---TKDTEQLIGRKQFSLMKPTAILINTSRGGLLD 92 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~pl---~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd 92 (180)
.++++.+++|+|.+-.|- .+-..+..+.+.++.+...+++|...+..-++
T Consensus 92 ~~~~l~~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~ 144 (166)
T TIGR00347 92 HLRTLEQKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTIN 144 (166)
T ss_pred HHHHHHhcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHH
Confidence 355677899999999883 34456677888888888787777655544343
No 203
>PRK07680 late competence protein ComER; Validated
Probab=33.92 E-value=54 Score=26.73 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=39.1
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHh
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLR 101 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~ 101 (180)
...+.++++.+||+|++++| ......++ .+....++++..++.+.-| +..+.|.+.+.
T Consensus 52 ~~~~~~~~~~~aDiVilav~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 52 VAKTIEEVISQSDLIFICVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred EECCHHHHHHhCCEEEEecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 45678888999999999997 22334444 2223356677788888633 36777777765
No 204
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=33.86 E-value=43 Score=29.50 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=33.9
Q ss_pred CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 43 VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
-+.+|+++||||+.+.+-.-.-+-=|+++.+.+.+|+.+...+
T Consensus 82 ~l~~Lv~~ADVvien~rpg~~~rlGl~~e~L~~~nP~LI~~si 124 (416)
T PRK05398 82 VLEKLIREADVLVENFGPGALDRMGFTWERIQEINPRLIVASI 124 (416)
T ss_pred HHHHHHhcCCEEEECCCcchHHHcCCCHHHHHhhCcCEEEEEE
Confidence 4889999999999987644334445789999999998777655
No 205
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=33.86 E-value=8.7 Score=30.46 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=16.9
Q ss_pred cCHHHHhccCCEEEEccCCC
Q psy5266 42 LVIRTRSAQSDFIFVTCALT 61 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~ 61 (180)
.+..+.++++|+|++++|..
T Consensus 60 ~~~~ea~~~aDvVilavp~~ 79 (219)
T TIGR01915 60 ADNAEAAKRADVVILAVPWD 79 (219)
T ss_pred eChHHHHhcCCEEEEECCHH
Confidence 46678899999999999954
No 206
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.64 E-value=31 Score=29.95 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=32.5
Q ss_pred eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHh--ccCCCcEEEecCCCC
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFS--LMKPTAILINTSRGG 89 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~--~mk~g~~lvn~~Rg~ 89 (180)
+....++++.++.||+|++.+|-. ..+.++.. .-. .+++++.+|+++.|-
T Consensus 81 i~~tsdl~eav~~aDiIvlAVPsq-~l~~vl~~-l~~~~~l~~~~~iIS~aKGI 132 (365)
T PTZ00345 81 IVAVSDLKEAVEDADLLIFVIPHQ-FLESVLSQ-IKENNNLKKHARAISLTKGI 132 (365)
T ss_pred eEEecCHHHHHhcCCEEEEEcChH-HHHHHHHH-hccccccCCCCEEEEEeCCc
Confidence 344678999999999999999943 22222211 111 345577889888774
No 207
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.43 E-value=1.9e+02 Score=23.62 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=36.8
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcC
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDK 103 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~ 103 (180)
..++++ +++||+|+.++|-......-+=.+....++++++++...-+ +....+.+.++..
T Consensus 74 ~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~ 133 (282)
T PRK05808 74 TTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP 133 (282)
T ss_pred eCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC
Confidence 345655 78999999999855443322222233457888877443333 5566787777543
No 208
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=32.40 E-value=27 Score=30.06 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=33.7
Q ss_pred CCCCCCcceeCHhHHhc-----cCC-CcEEEecCC-CCcc--------CHHHHHHHHhcCCcceEEe
Q psy5266 59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSR-GGLL--------DQEALVEFLRDKKIGGAGL 110 (180)
Q Consensus 59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~R-g~~v--------d~~al~~~L~~~~i~~~~l 110 (180)
.|.++|.|+||.+.+++ |+. |..++-..| +.-. ...++.++++++|++...+
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llL 79 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLL 79 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeC
Confidence 45678999999999986 555 666643323 2111 1125889999999944443
No 209
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=32.27 E-value=74 Score=27.43 Aligned_cols=45 Identities=16% Similarity=0.389 Sum_probs=33.6
Q ss_pred HHHHhccCCEEEE--ccCCCCCCcceeCHhHHhccCCCcEEEec--CCCC
Q psy5266 44 IRTRSAQSDFIFV--TCALTKDTEQLIGRKQFSLMKPTAILINT--SRGG 89 (180)
Q Consensus 44 l~~l~~~~D~v~~--h~pl~~~T~glIg~~~i~~mk~g~~lvn~--~Rg~ 89 (180)
+.|..++.|||+- .+|-.+ ---++.++....||+|.++|.. .+|+
T Consensus 238 ~a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlAa~~GG 286 (356)
T COG3288 238 VAEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLAAETGG 286 (356)
T ss_pred HHHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEehhhcCC
Confidence 5677889999954 345433 3468899999999999999876 3554
No 210
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=31.85 E-value=42 Score=27.74 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=32.8
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
...++++.++.||+|++++|- ..+..++. .....++++.++|.+..|
T Consensus 61 ~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~-~l~~~~~~~~~vi~~~ng 107 (325)
T PRK00094 61 ATTDLAEALADADLILVAVPS-QALREVLK-QLKPLLPPDAPIVWATKG 107 (325)
T ss_pred EeCCHHHHHhCCCEEEEeCCH-HHHHHHHH-HHHhhcCCCCEEEEEeec
Confidence 456788899999999999995 34444442 333446778888877654
No 211
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=31.05 E-value=86 Score=27.30 Aligned_cols=53 Identities=8% Similarity=-0.053 Sum_probs=31.2
Q ss_pred eeEEEeccccccCCccce-eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc
Q psy5266 21 VCVLIRYHVDLTGGSKQV-YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL 75 (180)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~ 75 (180)
|..+..|||......... ....++++.++.||.|+++.+...= .-++...+..
T Consensus 346 g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~~--~~~~~~~~~~ 399 (411)
T TIGR03026 346 GAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDEF--KDLDLEKIKD 399 (411)
T ss_pred CCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHHH--hccCHHHHHH
Confidence 667777887754422211 1246777888888888888765421 1245555554
No 212
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=30.73 E-value=45 Score=29.31 Aligned_cols=42 Identities=7% Similarity=0.051 Sum_probs=34.0
Q ss_pred CHHHHhccCCEEEEccC-CCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 43 VIRTRSAQSDFIFVTCA-LTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~p-l~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
-+.+|+++|||++-+.+ -.-+..| |+++.+...+|..+...+
T Consensus 81 ~l~~Li~~ADVvien~rpg~~~rlG-l~~e~L~~~nP~LIy~si 123 (405)
T PRK03525 81 AFLKLMETTDIFIEASKGPAFARRG-ITDEVLWEHNPKLVIAHL 123 (405)
T ss_pred HHHHHHHhCCEEEECCCccHHHHcC-CCHHHHHHhCCCeEEEEe
Confidence 48899999999998864 4445566 899999999998777655
No 213
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.70 E-value=1.3e+02 Score=25.32 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=40.1
Q ss_pred HHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHh
Q psy5266 44 IRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLR 101 (180)
Q Consensus 44 l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~ 101 (180)
+.+.++.||+|+-++|-+.+...-+=.+..+.+++++++.... .-+....+.+.++
T Consensus 73 ~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSnt--S~~~~~~la~~~~ 128 (314)
T PRK08269 73 AADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTT--STFLVTDLQRHVA 128 (314)
T ss_pred hHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcc--ccCCHHHHHhhcC
Confidence 6688899999999999887766666566666789998884332 2345556666554
No 214
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=30.45 E-value=61 Score=27.09 Aligned_cols=93 Identities=16% Similarity=0.203 Sum_probs=60.2
Q ss_pred cCCccccceeee-------EEEeccccccCC----ccceeeccCHHHHh---ccCCEEEEccCCCCCCcceeCHhHHhcc
Q psy5266 11 TGTPGQVHLIVC-------VLIRYHVDLTGG----SKQVYLILVIRTRS---AQSDFIFVTCALTKDTEQLIGRKQFSLM 76 (180)
Q Consensus 11 ~G~iG~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~~l~---~~~D~v~~h~pl~~~T~glIg~~~i~~m 76 (180)
.|++|.. ++. .+++||.+..+. .++.....||++++ +...+|-+-+|-..-|..+| .+.-.+|
T Consensus 8 LGrMG~n--~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~la~~L 84 (300)
T COG1023 8 LGRMGAN--LVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DDLAPLL 84 (300)
T ss_pred cchhhHH--HHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HHHHhhc
Confidence 4666665 433 357788777652 23334566766654 56788999999776666666 3445568
Q ss_pred CCCcEEEecCCCCccCHHHHHHHHhcCCcc
Q psy5266 77 KPTAILINTSRGGLLDQEALVEFLRDKKIG 106 (180)
Q Consensus 77 k~g~~lvn~~Rg~~vd~~al~~~L~~~~i~ 106 (180)
.+|.++|.-+-...-|...-.+.|++..|.
T Consensus 85 ~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~ 114 (300)
T COG1023 85 SAGDIVIDGGNSNYKDSLRRAKLLAEKGIH 114 (300)
T ss_pred CCCCEEEECCccchHHHHHHHHHHHhcCCe
Confidence 889999976555555555566677777774
No 215
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.43 E-value=1.1e+02 Score=25.22 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=43.4
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc-c-CCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL-M-KPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIP 115 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~-m-k~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ 115 (180)
...+++ .++.||+|+-++|-+.+...-+=. .+.+ + ++++++...+-+ +...++...++... ..+++-.+.+
T Consensus 75 ~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~-~l~~~~~~~~~il~snTS~--~~~~~la~~~~~~~-r~~g~hf~~P 147 (286)
T PRK07819 75 FTTDLG-DFADRQLVIEAVVEDEAVKTEIFA-ELDKVVTDPDAVLASNTSS--IPIMKLAAATKRPG-RVLGLHFFNP 147 (286)
T ss_pred eeCCHH-HhCCCCEEEEecccCHHHHHHHHH-HHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCCc-cEEEEecCCC
Confidence 345674 479999999999987665554433 4444 5 778888765433 44555555554332 2455556643
No 216
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=30.36 E-value=53 Score=29.16 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=44.1
Q ss_pred eeeccCHHHHhccCCEEEEccCCC-----------CCCcceeCHhHHhc----------------------cCCCcEEEe
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALT-----------KDTEQLIGRKQFSL----------------------MKPTAILIN 84 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~-----------~~T~glIg~~~i~~----------------------mk~g~~lvn 84 (180)
+....++++.++.||||+..+-.- +..+|+++.+..+- ..|++++||
T Consensus 62 v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin 141 (425)
T cd05197 62 FEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLN 141 (425)
T ss_pred EEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEe
Confidence 346778999999999999887653 22566666543331 446889998
Q ss_pred cCCCCccCHHHHHHHHhcCCcceEE
Q psy5266 85 TSRGGLLDQEALVEFLRDKKIGGAG 109 (180)
Q Consensus 85 ~~Rg~~vd~~al~~~L~~~~i~~~~ 109 (180)
++-.--+-..++.+.....++.+.+
T Consensus 142 ~TNP~di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 142 FTNPAGEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred cCChHHHHHHHHHHhCCCCcEEEEC
Confidence 8654333334444444334454443
No 217
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=30.03 E-value=50 Score=20.85 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=13.4
Q ss_pred CCCCcccCCcEEEcCCC
Q psy5266 164 ADHPLVQLDNCEIRGGT 180 (180)
Q Consensus 164 ~~~pl~~~~nv~it~~~ 180 (180)
-.+.-+..||++||+-|
T Consensus 15 L~dKhLdVPnIIiTPPT 31 (62)
T PF15366_consen 15 LSDKHLDVPNIIITPPT 31 (62)
T ss_pred ccccccCCCceEecCCC
Confidence 35678899999999854
No 218
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=29.82 E-value=49 Score=27.12 Aligned_cols=59 Identities=10% Similarity=0.202 Sum_probs=39.3
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhc
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRD 102 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~ 102 (180)
...+..++..+||+|++++| .......+ .+....++++.++|.+.-| +..+.+.+.+..
T Consensus 55 ~~~~~~e~~~~aDvVilav~-p~~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 55 GTHNKKELLTDANILFLAMK-PKDVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred EeCCHHHHHhcCCEEEEEeC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 45678889999999999999 33333444 2333446678888887544 356667776643
No 219
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=29.52 E-value=89 Score=24.63 Aligned_cols=59 Identities=8% Similarity=0.025 Sum_probs=40.7
Q ss_pred CCEEEEc-cCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEe
Q psy5266 51 SDFIFVT-CALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110 (180)
Q Consensus 51 ~D~v~~h-~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~l 110 (180)
+|.|++| ........| ++.+.+.++++-.-+--++-|++-+.+++.++++.+.+.++.+
T Consensus 160 ~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 160 VKAIIYTDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCEEEEeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 7866666 555566677 7899988877522122224688899999999999876655544
No 220
>PLN00203 glutamyl-tRNA reductase
Probab=29.07 E-value=89 Score=28.57 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=28.2
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMK 77 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk 77 (180)
...++.+.+.++|+|+.+.| ....+|..+.+..++
T Consensus 319 ~~~dl~~al~~aDVVIsAT~---s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 319 PLDEMLACAAEADVVFTSTS---SETPLFLKEHVEALP 353 (519)
T ss_pred cHhhHHHHHhcCCEEEEccC---CCCCeeCHHHHHHhh
Confidence 34577788999999999865 777799999998864
No 221
>KOG2711|consensus
Probab=28.57 E-value=75 Score=27.69 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=35.9
Q ss_pred eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 38 VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 38 ~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
+....+|.+...+|||+++.+|..- ..-|=.+..++.|+++..|....|
T Consensus 93 vvAv~dl~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711|consen 93 VVAVPDLVEAAKDADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKG 141 (372)
T ss_pred eEecchHHHHhccCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecc
Confidence 3456789999999999999999541 122334556678888888877665
No 222
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=27.36 E-value=77 Score=27.86 Aligned_cols=40 Identities=8% Similarity=0.073 Sum_probs=21.7
Q ss_pred eEEEeccccccCCcc---ceeeccCHHHHhccCCEEEEccCCC
Q psy5266 22 CVLIRYHVDLTGGSK---QVYLILVIRTRSAQSDFIFVTCALT 61 (180)
Q Consensus 22 ~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~D~v~~h~pl~ 61 (180)
..+..|||....... ......+++|.++.||.|+++.+..
T Consensus 355 ~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~ 397 (415)
T PRK11064 355 GETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVDHS 397 (415)
T ss_pred cEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCCCH
Confidence 556666666443111 1113356666667777777766643
No 223
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=27.24 E-value=68 Score=28.20 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=33.5
Q ss_pred CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 43 VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
-+.+|+++||||+.+.+=.-.-+-=|+++.+.+.+|+.+...+
T Consensus 81 ~l~~Lv~~ADVvien~rpg~~~rlGL~~~~L~~~nP~LV~~si 123 (415)
T TIGR03253 81 VLEELIKKADVMVENFGPGALDRMGFTWEYIQEINPRLILASI 123 (415)
T ss_pred HHHHHHhhCCEEEECCCCChHHHcCCCHHHHHHhCCCeEEEEe
Confidence 4889999999999987644333445789999999998777665
No 224
>PRK11430 putative CoA-transferase; Provisional
Probab=26.75 E-value=66 Score=27.99 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=32.9
Q ss_pred CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266 43 VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 43 ~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
-+.+|+++|||++.+.+=...-+-=|+++.+...+|+.+.+.+
T Consensus 86 ~~~~L~~~ADVvien~rpg~~~rlGl~y~~L~~~nP~LI~~si 128 (381)
T PRK11430 86 IFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASS 128 (381)
T ss_pred HHHHHHhcCCEEEeCCCccHHHHcCCCHHHHHHHCCCceEEee
Confidence 4789999999999887733222233599999999998777766
No 225
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=26.66 E-value=2.1e+02 Score=25.99 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=45.0
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE-ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI-NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 117 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv-n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep 117 (180)
...+++++ ++||+|+.++|-..+....+=.+.-..+++++++. |++- ++...+.+.++.. -...++.+|.+.|
T Consensus 75 ~~~~~~~l-~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTSt---l~i~~iA~~~~~p-~r~~G~HFf~Pap 148 (503)
T TIGR02279 75 PVTDLHAL-ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSS---LSITAIAAGLARP-ERVAGLHFFNPAP 148 (503)
T ss_pred EeCCHHHh-CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC---CCHHHHHHhcCcc-cceEEEeccCccc
Confidence 45577764 69999999999765544444333334577777765 5543 3334566666543 3466777776555
No 226
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=26.47 E-value=34 Score=25.07 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=22.6
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc--cCCCcEEEecC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL--MKPTAILINTS 86 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~--mk~g~~lvn~~ 86 (180)
...+++++++++|++++.+|=. -..-+-.+.-.. .++|.+++-++
T Consensus 58 ~~~~~~~~~~~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 58 AILDLEEILRDADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp ----TTGGGCC-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-
T ss_pred cccccccccccCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECC
Confidence 4567889999999999999943 222222222222 56788888774
No 227
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=25.78 E-value=84 Score=25.73 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=37.6
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHh-ccCCCcEEEecCCCCccCHH---HHHHHHhcCCc
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFS-LMKPTAILINTSRGGLLDQE---ALVEFLRDKKI 105 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~-~mk~g~~lvn~~Rg~~vd~~---al~~~L~~~~i 105 (180)
.+.++++++.++|+|+++.|- ..+ .+.+. .++.|..++..+-+.+.|.+ .|.++.++...
T Consensus 51 ~~~~~~ell~~~DvVvi~a~~--~~~----~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~ 114 (265)
T PRK13304 51 ACLSIDELVEDVDLVVECASV--NAV----EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC 114 (265)
T ss_pred eECCHHHHhcCCCEEEEcCCh--HHH----HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence 467899999999999999862 211 22222 34556566666666666543 45555555554
No 228
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=25.70 E-value=85 Score=29.51 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=45.3
Q ss_pred eEEEeccccccCCc----cce--eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHH
Q psy5266 22 CVLIRYHVDLTGGS----KQV--YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 95 (180)
Q Consensus 22 ~~~~~~~~~~~~~~----~~~--~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~a 95 (180)
..+..||++..... .+. ....++++.++++|+|++++|.. ....++. .....+++++++++++.-.....+.
T Consensus 29 ~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~-~l~~~~~~~~ii~d~~svk~~~~~~ 106 (735)
T PRK14806 29 REVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA-DLKPLLSEHAIVTDVGSTKGNVVDA 106 (735)
T ss_pred CEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-HHHHhcCCCcEEEEcCCCchHHHHH
Confidence 35667776643211 111 13456888899999999999964 2333321 1222356788888776543223455
Q ss_pred HHHHHhc
Q psy5266 96 LVEFLRD 102 (180)
Q Consensus 96 l~~~L~~ 102 (180)
+.+.+..
T Consensus 107 l~~~~~~ 113 (735)
T PRK14806 107 ARAVFGE 113 (735)
T ss_pred HHHhccc
Confidence 6666544
No 229
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.01 E-value=1.2e+02 Score=25.00 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=35.3
Q ss_pred ccCHHHHhccCCEEEEccCCCCC-CcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhc
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKD-TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRD 102 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~-T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~ 102 (180)
..++++.+++||+|++++|-..+ ...++.. .-..++++++++...-+ +....+.+.+..
T Consensus 70 ~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~-l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~ 129 (311)
T PRK06130 70 EAGLAAAVSGADLVIEAVPEKLELKRDVFAR-LDGLCDPDTIFATNTSG--LPITAIAQAVTR 129 (311)
T ss_pred eCCHHHHhccCCEEEEeccCcHHHHHHHHHH-HHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence 45788889999999999996532 3333322 22235666666433222 345677776653
No 230
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=23.98 E-value=20 Score=32.39 Aligned_cols=56 Identities=11% Similarity=-0.001 Sum_probs=36.1
Q ss_pred cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------------cCHHHHHHHHhcCCcceEEeecC
Q psy5266 58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------------LDQEALVEFLRDKKIGGAGLDVM 113 (180)
Q Consensus 58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------------vd~~al~~~L~~~~i~~~~lDv~ 113 (180)
-.|..+|..+||.+.+++ ||. |.-++-.-|.+. +...++.++++++|++.+.++-.
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt 108 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK 108 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH
Confidence 446789999999999998 554 544441112211 12235788899999977666544
No 231
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=23.73 E-value=36 Score=27.56 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=42.7
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCC-CcEEEecCCCCccCHHHHHHHHhcCCcceEEee
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKP-TAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~-g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lD 111 (180)
.+|++ ...|++++|+.|++.+..-.=.+...-||+ |...|.--+....+.+.+.+.+++--+....-|
T Consensus 116 vPL~~--~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 116 VPLED--ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -S--T--T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred CcCCC--CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 35555 678999999999999887776777777998 666666556666788889998887655433333
No 232
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=23.66 E-value=1.1e+02 Score=26.78 Aligned_cols=74 Identities=8% Similarity=0.101 Sum_probs=46.5
Q ss_pred cCCccccc-----eee-eEEEeccccccC---Ccc----ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccC
Q psy5266 11 TGTPGQVH-----LIV-CVLIRYHVDLTG---GSK----QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMK 77 (180)
Q Consensus 11 ~G~iG~~~-----~~~-~~~~~~~~~~~~---~~~----~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk 77 (180)
+|.+|+.. ..| ..+..++.+... ..+ ......++.+.+..+|+|+.+.+ .+..+|+.+.+..+.
T Consensus 188 aG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ii~~e~l~~~~ 264 (417)
T TIGR01035 188 AGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHPIVSKEDVERAL 264 (417)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCceEcHHHHHHHH
Confidence 57777651 123 455566555432 111 12344678888999999999954 777889999888752
Q ss_pred ----CCcEEEecCC
Q psy5266 78 ----PTAILINTSR 87 (180)
Q Consensus 78 ----~g~~lvn~~R 87 (180)
...+++..+.
T Consensus 265 ~~~~~~~~viDla~ 278 (417)
T TIGR01035 265 RERTRPLFIIDIAV 278 (417)
T ss_pred hcCCCCeEEEEeCC
Confidence 2346776654
No 233
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=23.63 E-value=52 Score=23.15 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=23.2
Q ss_pred ccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecC
Q psy5266 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 86 (180)
Q Consensus 49 ~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~ 86 (180)
.++|+|++++|-. .+...+- .....+++|+++|.++
T Consensus 64 ~~~DvV~~~~~~~-~~~~~~~-~~~~~~~~g~~viD~s 99 (122)
T smart00859 64 LAVDIVFLALPHG-VSKEIAP-LLPKAAEAGVKVIDLS 99 (122)
T ss_pred cCCCEEEEcCCcH-HHHHHHH-HHHhhhcCCCEEEECC
Confidence 5899999999944 3333222 1234467888888775
No 234
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=23.23 E-value=2.8e+02 Score=23.31 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=30.3
Q ss_pred eccCHHHHhccCCEEEEcc--CCCC----------CCcceeCHhHHhccCCCcEEEec
Q psy5266 40 LILVIRTRSAQSDFIFVTC--ALTK----------DTEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~--pl~~----------~T~glIg~~~i~~mk~g~~lvn~ 85 (180)
...++++.++.||+|..-. .... ...-.|+.+.++++|+++++.-+
T Consensus 206 ~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 206 LTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred EEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 4678999999999998742 1111 12235677777777777666654
No 235
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=22.87 E-value=1.1e+02 Score=21.79 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=35.5
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCc
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKI 105 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i 105 (180)
.++.+.++.+|+++....- -++.+.++++ ++.++|.....+ +|.-++..+-+.|-.
T Consensus 30 ~~~~~~l~~~d~ii~~~~~------~~~~~~l~~~-~~Lk~I~~~~~G-~d~id~~~a~~~gI~ 85 (133)
T PF00389_consen 30 EELAERLKDADAIIVGSGT------PLTAEVLEAA-PNLKLISTAGAG-VDNIDLEAAKERGIP 85 (133)
T ss_dssp HHHHHHHTTESEEEESTTS------TBSHHHHHHH-TT-SEEEESSSS-CTTB-HHHHHHTTSE
T ss_pred HHHHHHhCCCeEEEEcCCC------CcCHHHHhcc-ceeEEEEEcccc-cCcccHHHHhhCeEE
Confidence 3567788999999986431 6788889888 455666554433 344455555555554
No 236
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=22.83 E-value=1.7e+02 Score=21.81 Aligned_cols=37 Identities=8% Similarity=-0.027 Sum_probs=23.4
Q ss_pred eeEEEecccccc--CCccceeeccCHHHHhccCCEEEEc
Q psy5266 21 VCVLIRYHVDLT--GGSKQVYLILVIRTRSAQSDFIFVT 57 (180)
Q Consensus 21 ~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~~D~v~~h 57 (180)
+..+..+|.+.. ...+.......-++++++||+|.+.
T Consensus 31 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 31 GAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIIT 69 (147)
T ss_dssp CSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEE
T ss_pred CCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEE
Confidence 345555555553 3344445777899999999999886
No 237
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=22.81 E-value=1.5e+02 Score=24.06 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=39.0
Q ss_pred HHh-ccCCEEEEccCCCCCCcceeCHhHHh-ccCCCcEEEecCCCCccCHHHHHHHHhcCCc
Q psy5266 46 TRS-AQSDFIFVTCALTKDTEQLIGRKQFS-LMKPTAILINTSRGGLLDQEALVEFLRDKKI 105 (180)
Q Consensus 46 ~l~-~~~D~v~~h~pl~~~T~glIg~~~i~-~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i 105 (180)
+++ ..|||++-| ...+.|+.+.+. ++|+++.+|--+-...+..++.. .|++.-|
T Consensus 109 ~il~~~~DiliP~-----A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI 164 (244)
T PF00208_consen 109 EILSVDCDILIPC-----ALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGI 164 (244)
T ss_dssp HGGTSSSSEEEEE-----SSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-
T ss_pred ccccccccEEEEc-----CCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCC
Confidence 555 599999988 566889999999 88888877766555556666666 6666665
No 238
>KOG1975|consensus
Probab=22.25 E-value=1.2e+02 Score=26.53 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=47.0
Q ss_pred ccCHHHHh----ccCCEEEEccCC----C-CCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEee
Q psy5266 41 ILVIRTRS----AQSDFIFVTCAL----T-KDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111 (180)
Q Consensus 41 ~~~l~~l~----~~~D~v~~h~pl----~-~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lD 111 (180)
..+|.+++ .+.|+||+...+ . .+..-+.=+...+.||||-++|.+ +-|-+-+.+-|+.+.....+=|
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT----iPdsd~Ii~rlr~~e~~~~gNd 258 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT----IPDSDVIIKRLRAGEVERFGND 258 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe----cCcHHHHHHHHHhccchhhcce
Confidence 34688888 238999765443 2 333444444555679999999987 7788888888888866666667
Q ss_pred c
Q psy5266 112 V 112 (180)
Q Consensus 112 v 112 (180)
|
T Consensus 259 i 259 (389)
T KOG1975|consen 259 I 259 (389)
T ss_pred e
Confidence 7
No 239
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=21.65 E-value=71 Score=25.28 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=36.7
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcC
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDK 103 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~ 103 (180)
...++++++.++|+|++++|-. .-..++ ..+....++..+|.+.-| ++.+.|.+.+..+
T Consensus 56 ~~~~~~~~~~~~DiViiavp~~-~~~~v~--~~l~~~~~~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 56 TTTDWKQHVTSVDTIVLAMPPS-AHEELL--AELSPLLSNQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred EeCChHHHHhcCCEEEEecCHH-HHHHHH--HHHHhhccCCEEEEECCC--CCHHHHHHHcCCC
Confidence 4567899999999999999932 212222 112211135678877655 5566677777654
No 240
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=21.60 E-value=2e+02 Score=23.86 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=42.6
Q ss_pred ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccC---CCcEEEecCCCCccCHHHHHHHHhcCCcce
Q psy5266 41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMK---PTAILINTSRGGLLDQEALVEFLRDKKIGG 107 (180)
Q Consensus 41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk---~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~ 107 (180)
..+.++...++|+|++++. -..=.+.+.++| ++..+|.+.-| +..+.|++++.+..++.
T Consensus 53 ~~~~~~~~~~advv~LavK------Pq~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vvR 114 (266)
T COG0345 53 TTDNQEAVEEADVVFLAVK------PQDLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVVR 114 (266)
T ss_pred cCcHHHHHhhCCEEEEEeC------hHhHHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCceEE
Confidence 5677899999999999986 233356666776 47788877554 56788888887555533
No 241
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=21.59 E-value=66 Score=25.29 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=32.1
Q ss_pred cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEe
Q psy5266 42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN 84 (180)
Q Consensus 42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn 84 (180)
.+++++++++|+|+.+ .-+.+++.++.......++...++..
T Consensus 102 ~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 102 ENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred hHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4567788899999988 45778888888888888876555553
No 242
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=21.57 E-value=1.9e+02 Score=21.33 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=36.7
Q ss_pred HHHHhccCCEEEEccCCCCCCcceeCHhHHhc-cCCCcEEEecCCCCccCHHHHHHHHhcCCc
Q psy5266 44 IRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL-MKPTAILINTSRGGLLDQEALVEFLRDKKI 105 (180)
Q Consensus 44 l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~-mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i 105 (180)
+-+..+..|+|+-. |.+..++ +.+|+..+|. ||.+++.+.+.+.|...++
T Consensus 45 I~~~~~~gDiVITq-----------DigLA~~~l~Kga~vl~~-rG~~yt~~nI~~~L~~R~~ 95 (130)
T PF02639_consen 45 IVNHAKPGDIVITQ-----------DIGLASLLLAKGAYVLNP-RGKEYTKENIDELLAMRHL 95 (130)
T ss_pred HHHcCCCCCEEEEC-----------CHHHHHHHHHCCCEEECC-CCCCCCHHHHHHHHHHHHH
Confidence 44666778887655 5555555 5568888885 9999999998888877655
No 243
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=21.49 E-value=1.4e+02 Score=23.46 Aligned_cols=50 Identities=22% Similarity=0.084 Sum_probs=31.7
Q ss_pred hcCCcceEEeecCCCCCCC-CCCCCC-------CCCceeecccCHHHHHHHHHccccc
Q psy5266 101 RDKKIGGAGLDVMIPEPLP-ADHPLV-------QLDNCGNGLLDQEALVEFLRDKKIG 150 (180)
Q Consensus 101 ~~~~i~~~~lDv~~~ep~~-~~~~l~-------~~~Nv~~g~~~~~al~~~L~~g~l~ 150 (180)
+.|....+.+||-+.+|.+ ...... .+|+.--.++|+++|..||+.|+|.
T Consensus 81 e~g~p~~yYiDV~~~t~~~~~~~~~~DLyLDi~a~p~ge~el~DeDEL~~Al~~GlIT 138 (183)
T COG2306 81 ERGNPQDYYIDVGEYTPREDNIARTEDLYLDIIALPGGEAELLDEDELEDALRYGLIT 138 (183)
T ss_pred cCCCchheEEEehhcccCCCCceeeeeeeEEEEEecCCCeEEecHHHHHHHHHcCCCC
Confidence 4566778888998777741 111111 1122212289999999999999884
No 244
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=21.37 E-value=78 Score=28.11 Aligned_cols=40 Identities=15% Similarity=0.020 Sum_probs=31.2
Q ss_pred eeeEEEeccccccCCccc----eeeccCHHHHhccCCEEEEccC
Q psy5266 20 IVCVLIRYHVDLTGGSKQ----VYLILVIRTRSAQSDFIFVTCA 59 (180)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~l~~~~D~v~~h~p 59 (180)
.|.++.+|||....-... +.-..++++.++.||+|++...
T Consensus 342 ~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 342 KGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred CCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence 588899999988753322 3567789999999999998854
No 245
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=21.33 E-value=22 Score=29.11 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=16.4
Q ss_pred eccCHHHHhccCCEEEEccC
Q psy5266 40 LILVIRTRSAQSDFIFVTCA 59 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~p 59 (180)
.+.+++++++.+|+|+...|
T Consensus 50 ~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 50 ITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred ccCCHHHhccCCCEEEECCC
Confidence 45789999999999986664
No 246
>PLN02342 ornithine carbamoyltransferase
Probab=21.30 E-value=2.9e+02 Score=23.93 Aligned_cols=47 Identities=9% Similarity=0.176 Sum_probs=29.3
Q ss_pred eeccCHHHHhccCCEEEEcc--CC-C-CC--------CcceeCHhHHhccCCCcEEEec
Q psy5266 39 YLILVIRTRSAQSDFIFVTC--AL-T-KD--------TEQLIGRKQFSLMKPTAILINT 85 (180)
Q Consensus 39 ~~~~~l~~l~~~~D~v~~h~--pl-~-~~--------T~glIg~~~i~~mk~g~~lvn~ 85 (180)
....++++.++.||+|..-. +. . ++ ..-.|+.+.++++|+++++.-+
T Consensus 248 ~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 248 EITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred EEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 35678999999999998753 11 1 10 1244666666666666665544
No 247
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=20.79 E-value=1.5e+02 Score=24.89 Aligned_cols=61 Identities=8% Similarity=0.100 Sum_probs=35.8
Q ss_pred eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhcc-CCCcEEEecCCCC-------------ccCHHHHHHHHhc
Q psy5266 40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLM-KPTAILINTSRGG-------------LLDQEALVEFLRD 102 (180)
Q Consensus 40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~m-k~g~~lvn~~Rg~-------------~vd~~al~~~L~~ 102 (180)
...++.+.+.++|+|+.+.|-.. .. .+-...+... +++.+++..+... +++.++|.+..++
T Consensus 228 ~~~~~~~~l~~aDvVi~at~~~~-~~-~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 228 PLDELLELLNEADVVISATGAPH-YA-KIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred eHHHHHHHHhcCCEEEECCCCCc-hH-HHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHHH
Confidence 34567888899999999988443 21 1112222222 3477888776432 3556666665543
No 248
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=20.46 E-value=1.6e+02 Score=26.32 Aligned_cols=63 Identities=8% Similarity=0.064 Sum_probs=0.0
Q ss_pred eeEEEecccccc----CCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266 21 VCVLIRYHVDLT----GGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88 (180)
Q Consensus 21 ~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg 88 (180)
|..+..|||.+. ..........++++-++.+|+|++......=. -++.+.+.+.+ .+|-..|+
T Consensus 355 g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~tDH~~fk--~id~~~i~~~~---~vivDtrn 421 (436)
T COG0677 355 GGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIATDHSEFK--EIDYEAIGKEA---KVIVDTRN 421 (436)
T ss_pred CCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEEeccHHhh--cCCHHHhccCC---cEEEECcc
Done!