RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5266
(180 letters)
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 83.5 bits (205), Expect = 4e-21
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
SD + + T+ ++G K+ SLMKP ++LIN SRG ++D AL + L K + GA
Sbjct: 95 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGA 154
Query: 109 GLDVMIPEPL----PADHPLVQLDNC 130
+DV EP P PL + DN
Sbjct: 155 AIDVFPTEPATNSDPFTSPLAEFDNV 180
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 82.8 bits (203), Expect = 6e-21
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
D + + C L +TE +I + L K A ++NT+RG L D++A+ L ++ G
Sbjct: 99 PVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGY 158
Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
DV P+P P DHP +
Sbjct: 159 AGDVWFPQPAPKDHPWRTMPYN 180
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 72.7 bits (177), Expect = 4e-17
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
A++DFI V T +T LI ++ + KP I++N +RGGL+D+ AL + + + A
Sbjct: 97 ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAA 156
Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
GLDV EP D PL +L
Sbjct: 157 GLDVFATEPCT-DSPLFELAQV 177
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 70.7 bits (172), Expect = 3e-16
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
+ S F + T +T + + AI++NT+RG L+D E +V L ++ A
Sbjct: 102 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 161
Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
G DV EP + L N
Sbjct: 162 GFDVFAGEP-NINEGYYDLPNT 182
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 69.7 bits (169), Expect = 8e-16
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
SD + + C L + LI M+ A L+NT+RGGL+D++AL + L++ +I GA
Sbjct: 103 FHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGA 162
Query: 109 GLDVMIPEPLP-ADHPLVQLDNC 130
LDV EP + PL N
Sbjct: 163 ALDVHESEPFSFSQGPLKDAPNL 185
Score = 51.6 bits (122), Expect = 4e-09
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 127 LDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPLVQLDNC 174
++ GL+D++AL + L++ +I GA LDV EP + PL N
Sbjct: 137 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL 185
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 44.4 bits (103), Expect = 2e-06
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 49 AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
QSD I + + +I F+LMKP AI+INT+R L+D +A++ L+ K+ G
Sbjct: 96 KQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGV 155
Query: 109 GLDVMIPEPL-------------PADHPLVQLDNC 130
G+D E P L+ + N
Sbjct: 156 GIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNV 190
Score = 32.9 bits (73), Expect = 0.014
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 127 LDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPM-------------PADHPLVQLDN 173
++ L+D +A++ L+ K+ G G+D E P L+ + N
Sbjct: 130 INTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPN 189
Query: 174 C 174
Sbjct: 190 V 190
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 43.6 bits (101), Expect = 2e-06
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 52 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
L K T L+ + +LM A+ +N R +LD++ ++ L+++ D
Sbjct: 94 RAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 153
Query: 112 VMI-PEPLPADHPLVQLDNC 130
V D L N
Sbjct: 154 VWWGRNDFAKDAEFFSLPNV 173
Score = 42.4 bits (98), Expect = 5e-06
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 128 DNCGNGLLDQEALVEFLRDKKIGGAGLDVMI-PEPMPADHPLVQLDNC 174
+ +LD++ ++ L+++ DV D L N
Sbjct: 126 NVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 43.3 bits (100), Expect = 3e-06
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 52 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
D I + +I + + MK +++N SRG L+D +A++ L KI G +D
Sbjct: 98 DVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMD 157
Query: 112 VMIPEP-------------LPADHPLVQLDNC 130
V E L+ N
Sbjct: 158 VYEGEVGIFNEDWEGKEFPDARLADLIARPNV 189
Score = 30.9 bits (68), Expect = 0.064
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 127 LDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPM-------------PADHPLVQLDN 173
++ L+D +A++ L KI G +DV E L+ N
Sbjct: 129 VNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPN 188
Query: 174 C 174
Sbjct: 189 V 189
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 28.7 bits (63), Expect = 0.40
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 75 LMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHP 123
++ ++I ++ + + + K G + + LP+D
Sbjct: 252 ILSENGLIIASTNAANMTVSQFKKQIE-KGFGKQKHTYLDLQQLPSDFA 299
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell
leukemia virus type 2 [TaxId: 11909]}
Length = 137
Score = 24.8 bits (54), Expect = 4.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 12 GTPGQVHLIVCVLIRYHV 29
G PG+V I+ +L++ V
Sbjct: 76 GYPGRVVEIINILVKNQV 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.142 0.420
Gapped
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 676,873
Number of extensions: 29510
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 19
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)