Query psy5269
Match_columns 190
No_of_seqs 121 out of 1172
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:02:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11838 ERAP1_C: ERAP1-like C 100.0 1.5E-29 3.3E-34 214.2 14.2 164 3-178 49-229 (324)
2 KOG1046|consensus 99.9 1E-22 2.2E-27 193.4 14.2 164 3-178 596-769 (882)
3 TIGR02412 pepN_strep_liv amino 99.6 1.8E-15 3.9E-20 143.6 11.8 155 3-177 561-727 (831)
4 PF13646 HEAT_2: HEAT repeats; 75.8 3.8 8.2E-05 27.2 3.2 63 88-157 14-76 (88)
5 COG0308 PepN Aminopeptidase N 74.3 16 0.00035 35.7 8.2 156 4-174 581-749 (859)
6 KOG2062|consensus 67.7 23 0.0005 34.1 7.2 96 82-183 494-604 (929)
7 PRK00523 hypothetical protein; 62.1 19 0.00042 24.1 4.2 49 106-154 22-70 (72)
8 PF12390 Se-cys_synth_N: Selen 55.7 9.3 0.0002 22.3 1.7 32 42-73 1-33 (40)
9 PF03672 UPF0154: Uncharacteri 50.3 39 0.00085 22.1 4.1 47 108-154 16-62 (64)
10 PRK01844 hypothetical protein; 49.2 41 0.00088 22.6 4.1 49 106-154 21-69 (72)
11 COG3763 Uncharacterized protei 37.8 1.2E+02 0.0027 20.2 5.4 47 106-152 21-67 (71)
12 cd06403 PB1_Par6 The PB1 domai 36.4 27 0.00059 23.9 1.8 39 42-82 11-51 (80)
13 COG5443 FlbT Flagellar biosynt 33.0 65 0.0014 24.3 3.4 48 126-173 52-99 (148)
14 PF01417 ENTH: ENTH domain; I 31.5 2E+02 0.0043 20.7 6.5 34 83-116 53-87 (125)
15 PF12796 Ank_2: Ankyrin repeat 30.1 1.4E+02 0.0029 19.4 4.6 52 94-150 29-80 (89)
16 TIGR02270 conserved hypothetic 27.4 2.1E+02 0.0045 25.6 6.4 81 88-175 161-248 (410)
17 KOG3192|consensus 27.2 1.9E+02 0.004 22.6 5.2 81 106-186 3-117 (168)
18 smart00315 RGS Regulator of G 25.4 2.2E+02 0.0049 19.3 8.9 72 48-134 3-78 (118)
19 PF09324 DUF1981: Domain of un 25.1 2.3E+02 0.0049 19.2 6.2 51 52-113 30-82 (86)
20 PF13606 Ank_3: Ankyrin repeat 24.4 1.1E+02 0.0024 16.2 2.7 19 94-112 5-23 (30)
21 PLN03218 maturation of RBCL 1; 24.1 7.7E+02 0.017 25.1 11.6 25 92-119 583-607 (1060)
22 PF10585 UBA_e1_thiolCys: Ubiq 21.9 1.1E+02 0.0023 18.4 2.4 16 103-118 29-44 (45)
23 cd03571 ENTH_epsin ENTH domain 21.3 3.4E+02 0.0073 19.9 6.0 72 24-116 10-84 (123)
24 KOG1861|consensus 21.1 6.7E+02 0.014 23.2 8.5 114 68-181 284-403 (540)
25 TIGR02284 conserved hypothetic 20.9 3.6E+02 0.0077 20.0 8.9 80 52-133 27-122 (139)
No 1
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.96 E-value=1.5e-29 Score=214.20 Aligned_cols=164 Identities=26% Similarity=0.434 Sum_probs=138.0
Q ss_pred cccccccHHHHHHhhcCc-CCCCCchHh--hhhhhhccccccccccccccccc-C-chhHHHHHHHHHHHhhhhhhhcCC
Q psy5269 3 AIECVIKVIFIMLEKKPF-ERLPKYTSW--LTSGLAERGLRQFRRIPVDLLLS-N-TEYHHLFYQFGVQILKPAGQSLGW 77 (190)
Q Consensus 3 a~~G~i~~~~~l~l~~yL-~~E~~~~~W--~~~~L~~l~~~~~~~~~~~~~l~-~-~~~~~~~~~f~~~l~~~~~~~lg~ 77 (190)
+.+|.++++.+|+++.|+ ++|++|.|| +.+.+..+ ...+. . +.....|++|+++++.|+++++||
T Consensus 49 ~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l----------~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 118 (324)
T PF11838_consen 49 ARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSL----------RNRLYAEDEELQEAFRKFVRRLLEPLYERLGW 118 (324)
T ss_dssp HHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHH----------HHHHCSC-HHHHHHHHHHHHHHHHHHHHH--S
T ss_pred HHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHH----------HHHHHhccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457999999999999999 999999999 99999999 54444 3 344455999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcC-CC---CCCCCchHHHHHHHhhcCCHHHHHHHHHHHH
Q psy5269 78 EPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKG-TA---ILPADLRSPVYRAAIAGGSEATYQQLLKVIH 153 (190)
Q Consensus 78 ~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~-~~---~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~ 153 (190)
+..+++++....+|..++.++| |+++|+++|.++|++|+.+ .+ +||||+|.+|||.++++|++++|+++++.|+
T Consensus 119 ~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~ 196 (324)
T PF11838_consen 119 DPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYK 196 (324)
T ss_dssp SSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHh
Confidence 9988899999999999999999 9999999999999999987 33 7999999999999999999999999999999
Q ss_pred hcCC--------ceeeccCCHHHHHHHHHHHHH
Q psy5269 154 NYGH--------GGYGVTTAPGTSRYAVQLVTR 178 (190)
Q Consensus 154 ~s~~--------~aLg~t~d~~~l~~~L~~~l~ 178 (190)
++++ .||||++||++++++|+++++
T Consensus 197 ~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 197 NSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp TTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 9887 999999999999999999877
No 2
>KOG1046|consensus
Probab=99.89 E-value=1e-22 Score=193.38 Aligned_cols=164 Identities=23% Similarity=0.347 Sum_probs=152.8
Q ss_pred cccccccHHHHHHhhcCcCCCCCchHh--hhhhhhcccccccccccccccccCchhHHHHHHHHHHHhhhhhhhcCCccC
Q psy5269 3 AIECVIKVIFIMLEKKPFERLPKYTSW--LTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPK 80 (190)
Q Consensus 3 a~~G~i~~~~~l~l~~yL~~E~~~~~W--~~~~L~~l~~~~~~~~~~~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~ 80 (190)
|.+|.++++.+|+++.|+.+|++|.|| +...+..+ .. ++..+.+..++.|+.+++.|.++++||...
T Consensus 596 a~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~----------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 664 (882)
T KOG1046|consen 596 ARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKL----------HS-LEDTEIYSKFKEFVKKLILPIFEKLGWSDG 664 (882)
T ss_pred HhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHH----------hh-cccchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 578999999999999999999999999 77888888 45 777899999999999999999999999986
Q ss_pred CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHhcCC---
Q psy5269 81 ANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHNYGH--- 157 (190)
Q Consensus 81 ~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~s~~--- 157 (190)
..++ ....+|..++..||..|+++|...|..+|..|..+..++|+++|.+|||.++++|+++.|+++++.|+++..
T Consensus 665 ~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~~~~ip~~lr~~vy~~~~~~g~~~~w~~~~~~y~~~~~~~e 743 (882)
T KOG1046|consen 665 ADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAGTNPIPPDLREVVYCTAVQFGTEEDWEQLLELYKKETTAAE 743 (882)
T ss_pred ccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCCChhhhhhhhhHHHHhcCHhHHHHHHHHHhccccHHH
Confidence 4444 889999999999999999999999999999999998899999999999999999999999999999999987
Q ss_pred -----ceeeccCCHHHHHHHHHHHHH
Q psy5269 158 -----GGYGVTTAPGTSRYAVQLVTR 178 (190)
Q Consensus 158 -----~aLg~t~d~~~l~~~L~~~l~ 178 (190)
.||||+++++.++++|++.++
T Consensus 744 ~~~~l~al~~~~~~~~l~~~l~~~~~ 769 (882)
T KOG1046|consen 744 KRKLLNALSCSKDPWLLQRLLDLAFD 769 (882)
T ss_pred HHHHHHHhccCccHHHHHHHHHHhcc
Confidence 999999999999999987544
No 3
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=99.63 E-value=1.8e-15 Score=143.63 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=125.4
Q ss_pred cccccccHHHHHHhh-cCcCCCCCchHh--hhhhhh-cccccccccccccccccCchhHHHHHHHHHHHhhhhhhhcCCc
Q psy5269 3 AIECVIKVIFIMLEK-KPFERLPKYTSW--LTSGLA-ERGLRQFRRIPVDLLLSNTEYHHLFYQFGVQILKPAGQSLGWE 78 (190)
Q Consensus 3 a~~G~i~~~~~l~l~-~yL~~E~~~~~W--~~~~L~-~l~~~~~~~~~~~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~ 78 (190)
+.+|.++++.+|+++ .||++|++|.|| +...+. .+ ...+...+.+..+++|+..++.+....
T Consensus 561 ~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 626 (831)
T TIGR02412 561 VRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAV----------AAQYAPIADRPALLAVAALACRSLRRA---- 626 (831)
T ss_pred HHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH----------HHHhCCHHHHHHHHHHHHHHHHHHHhc----
Confidence 467999999999966 899999999999 888888 77 556656678899999998888764322
Q ss_pred cCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHhcCC-
Q psy5269 79 PKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHNYGH- 157 (190)
Q Consensus 79 ~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~s~~- 157 (190)
++++.+.+++ .+..++|..|+++|++.++++|+.|+.| ..||||+|..|||.++++ +..+|+.++++|+.+++
T Consensus 627 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~dlr~~v~~~~~~~-~~~~~~~l~~~~~~~~~~ 700 (831)
T TIGR02412 627 ---MESGPDFQLR-WLRALALTATDPDSLRRLLSLLDGKIKG-LALDPDLRWRIIARLAAL-GFIDADDIAAELERDNTA 700 (831)
T ss_pred ---cCCCccHHHH-HHHHHHHhcCCHHHHHHHHHHHhCCCCC-cccCHhHHHHHHHHHHhc-CCCCHHHHHHHHhcCCCH
Confidence 2333344443 3555799999999999999999998776 479999999999987775 56788889999988776
Q ss_pred -------ceeeccCCHHHHHHHHHHHH
Q psy5269 158 -------GGYGVTTAPGTSRYAVQLVT 177 (190)
Q Consensus 158 -------~aLg~t~d~~~l~~~L~~~l 177 (190)
.||||++||+++++.+..++
T Consensus 701 ~~~~~~l~al~~~~~~~~~~~~~~~~~ 727 (831)
T TIGR02412 701 SGEEHAAAARAARPDAAAKREAWQKLV 727 (831)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 89999999999997666654
No 4
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=75.82 E-value=3.8 Score=27.21 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q psy5269 88 TLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHNYGH 157 (190)
Q Consensus 88 ~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~s~~ 157 (190)
...|..++..++..++++.+....+++ .++ .+.+|..+.....+.|+++.++.+.+.+.++.+
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d~---~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~ 76 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KDE---DPMVRRAAARALGRIGDPEAIPALIKLLQDDDD 76 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TSS---SHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-SS
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCc
Confidence 367778888999988876665555544 332 567888888777788888888989888766544
No 5
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=74.30 E-value=16 Score=35.66 Aligned_cols=156 Identities=16% Similarity=0.030 Sum_probs=93.3
Q ss_pred ccccccHHHHHHhhcCcCCCCCchHh----hhhhhhcccccccccccccccccCchhHHHHHHHHHHHhhhhhhhcCCcc
Q psy5269 4 IECVIKVIFIMLEKKPFERLPKYTSW----LTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQFGVQILKPAGQSLGWEP 79 (190)
Q Consensus 4 ~~G~i~~~~~l~l~~yL~~E~~~~~W----~~~~L~~l~~~~~~~~~~~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~ 79 (190)
.+|..+.......+....++..+.++ ..+.+..+ ..... .+ ..+.......+...+.+.|+..
T Consensus 581 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~ 647 (859)
T COG0308 581 AAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLAL----------PSFAD-LE--KFIDPDAIDQLRDALVRLGAEA 647 (859)
T ss_pred HhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhc----------ccchh-hh--hhcCHHHHHHHHHHHHHHHHHh
Confidence 34555666666666655555555555 11222222 11111 11 4566667788888888888876
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCC-HHHHHHHHHHHHhcCC-
Q psy5269 80 KANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGS-EATYQQLLKVIHNYGH- 157 (190)
Q Consensus 80 ~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~-~~~~~~l~~~~~~s~~- 157 (190)
.. +..........+ ..++...++.+......+|..+-.....++|++|..+--.-...++ .+.+..+.+.|..+..
T Consensus 648 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 725 (859)
T COG0308 648 VA-DDLLALYHIGAL-SQSLYEEDASLAALRALRNACLERLEKQEDPELRSLVVKAYAAAGNMTDALKALLEAYQSPTRA 725 (859)
T ss_pred hc-chHHHHHHhhhh-ccccccccHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHhcChHHHHHHHHHhcccCChH
Confidence 53 222233333323 6677778999999999999888665556788888776666555444 3357788888776665
Q ss_pred -------ceeeccCCHHHHHHHHH
Q psy5269 158 -------GGYGVTTAPGTSRYAVQ 174 (190)
Q Consensus 158 -------~aLg~t~d~~~l~~~L~ 174 (190)
.+.+-...+..+..+|.
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~l~ 749 (859)
T COG0308 726 EALRDFADAFGRFPLVMDKWFALQ 749 (859)
T ss_pred HHHHHHHHHhcccccHHHHHHHHH
Confidence 45555555555544444
No 6
>KOG2062|consensus
Probab=67.73 E-value=23 Score=34.12 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=68.7
Q ss_pred CCChHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCCCCCCCch-HHHHHHHhhc---CCHHHHHHHHHHHHhcC
Q psy5269 82 NENHLNTLLRSLIISRLGVY-GDPDTLTLARAKFEAHVKGTAILPADLR-SPVYRAAIAG---GSEATYQQLLKVIHNYG 156 (190)
Q Consensus 82 ~e~~~~~~lR~~il~~ac~~-g~~~c~~~a~~~f~~~~~~~~~ip~d~r-~~vy~~~~~~---g~~~~~~~l~~~~~~s~ 156 (190)
.|+...+..|.+.++.||.. |-+ +.|..+.++...+. +|-+| .-+|..++.+ |+...-..+++.-.+-.
T Consensus 494 ~ETQHeki~RGl~vGiaL~~ygrq---e~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~ 567 (929)
T KOG2062|consen 494 QETQHEKIIRGLAVGIALVVYGRQ---EDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV 567 (929)
T ss_pred hhhhHHHHHHHHHHhHHHHHhhhh---hhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhccccccc
Confidence 46667889999999999965 533 35666666665554 44444 5689888885 45666777777644333
Q ss_pred C--------ceee--ccCCHHHHHHHHHHHHHhcCCC
Q psy5269 157 H--------GGYG--VTTAPGTSRYAVQLVTRALDPT 183 (190)
Q Consensus 157 ~--------~aLg--~t~d~~~l~~~L~~~l~~~dp~ 183 (190)
+ -||| |++||.++-.++++..++.+|-
T Consensus 568 nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~H 604 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPH 604 (929)
T ss_pred chHHHHHHHHHheeeEecChhhchHHHHHHhhhcChh
Confidence 3 4444 9999999999999999998884
No 7
>PRK00523 hypothetical protein; Provisional
Probab=62.14 E-value=19 Score=24.13 Aligned_cols=49 Identities=12% Similarity=0.284 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHh
Q psy5269 106 TLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHN 154 (190)
Q Consensus 106 c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~ 154 (190)
-.=-|++.|..++....+|.++...+.|..--+..+++.-+++....++
T Consensus 22 Gffiark~~~k~l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~mk~ 70 (72)
T PRK00523 22 GYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSVKN 70 (72)
T ss_pred HHHHHHHHHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 3456789999999877789999888888888888888877777665543
No 8
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=55.73 E-value=9.3 Score=22.32 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=19.6
Q ss_pred ccccc-ccccccCchhHHHHHHHHHHHhhhhhh
Q psy5269 42 FRRIP-VDLLLSNTEYHHLFYQFGVQILKPAGQ 73 (190)
Q Consensus 42 ~~~~~-~~~~l~~~~~~~~~~~f~~~l~~~~~~ 73 (190)
||++| |+.++..++.......|-+.++.....
T Consensus 1 lR~LPsVD~lL~~~~~~~l~~~~~r~~v~~~vR 33 (40)
T PF12390_consen 1 LRQLPSVDELLQEPEIQDLIERYGRPLVVDAVR 33 (40)
T ss_pred CCCCchHHHHHhChhhHHHHHHcCHHHHHHHHH
Confidence 35555 566677676666666666666555443
No 9
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=50.26 E-value=39 Score=22.13 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHh
Q psy5269 108 TLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHN 154 (190)
Q Consensus 108 ~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~ 154 (190)
--|+..|..++....+|.++.....|.---+..++..-+++....++
T Consensus 16 f~ar~~~~k~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 16 FIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN 62 (64)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 45788899998766678888888888888888888777776665543
No 10
>PRK01844 hypothetical protein; Provisional
Probab=49.19 E-value=41 Score=22.59 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHh
Q psy5269 106 TLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHN 154 (190)
Q Consensus 106 c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~ 154 (190)
-.=-|++.|..++....+|.++.....+.---+..+++.-+++....++
T Consensus 21 Gff~ark~~~k~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk~ 69 (72)
T PRK01844 21 GFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNK 69 (72)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 3456789999999877789998888888887788888777776665543
No 11
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.79 E-value=1.2e+02 Score=20.19 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHH
Q psy5269 106 TLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVI 152 (190)
Q Consensus 106 c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~ 152 (190)
-.=-|++.+..++.+..+|.++.....|..--+..+++.-+++....
T Consensus 21 G~fiark~~~k~lk~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 21 GFFIARKQMKKQLKDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 35667889999988877889888888887777777777666655543
No 12
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=36.43 E-value=27 Score=23.88 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=26.5
Q ss_pred cccccccccccCchhHHHHHHHHHHHh--hhhhhhcCCccCCC
Q psy5269 42 FRRIPVDLLLSNTEYHHLFYQFGVQIL--KPAGQSLGWEPKAN 82 (190)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~f~~~l~--~~~~~~lg~~~~~~ 82 (190)
||||.+.+- .+..++.|...+..+. .++==-+||....|
T Consensus 11 fRRFsl~r~--~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~g 51 (80)
T cd06403 11 FRRFSLDRN--KPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHG 51 (80)
T ss_pred EEEEEeccc--cCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Confidence 799999874 4667889998888875 43333356655433
No 13
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=32.99 E-value=65 Score=24.26 Aligned_cols=48 Identities=10% Similarity=-0.094 Sum_probs=38.1
Q ss_pred CCchHHHHHHHhhcCCHHHHHHHHHHHHhcCCceeeccCCHHHHHHHH
Q psy5269 126 ADLRSPVYRAAIAGGSEATYQQLLKVIHNYGHGGYGVTTAPGTSRYAV 173 (190)
Q Consensus 126 ~d~r~~vy~~~~~~g~~~~~~~l~~~~~~s~~~aLg~t~d~~~l~~~L 173 (190)
..+|...|.+-|..=++..-++..++|..+-+.-++|++|++.++.+.
T Consensus 52 TPlRqlYF~aqmmlinp~gaeq~~~~F~~~l~~l~~~f~~~eil~~lk 99 (148)
T COG5443 52 TPLRQLYFIAQMMLINPAGAEQATEMFRKSLNMLLACFKDAEILAALK 99 (148)
T ss_pred ChHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345777777777777777788888888888888899999999987643
No 14
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=31.55 E-value=2e+02 Score=20.69 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=24.6
Q ss_pred CChHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHH
Q psy5269 83 ENHLNTLLRSL-IISRLGVYGDPDTLTLARAKFEA 116 (190)
Q Consensus 83 e~~~~~~lR~~-il~~ac~~g~~~c~~~a~~~f~~ 116 (190)
.......++.+ ++..++..|.+.|+..++.....
T Consensus 53 ~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~ 87 (125)
T PF01417_consen 53 GKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDI 87 (125)
T ss_dssp SSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHH
T ss_pred CcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 34445566655 78999999999999999866554
No 15
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=30.11 E-value=1.4e+02 Score=19.44 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHH
Q psy5269 94 IISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLK 150 (190)
Q Consensus 94 il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~ 150 (190)
.+.+||..|+.++++...+.- .+.+.-+ .--.+.+-.++.+|..+..+.+++
T Consensus 29 ~l~~A~~~~~~~~~~~Ll~~g----~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~ 80 (89)
T PF12796_consen 29 ALHYAAENGNLEIVKLLLENG----ADINSQD-KNGNTALHYAAENGNLEIVKLLLE 80 (89)
T ss_dssp HHHHHHHTTTHHHHHHHHHTT----TCTT-BS-TTSSBHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhc----ccccccC-CCCCCHHHHHHHcCCHHHHHHHHH
Confidence 666777777766665554310 0111001 112345555666776666655554
No 16
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=27.45 E-value=2.1e+02 Score=25.56 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHhcCC-------cee
Q psy5269 88 TLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHNYGH-------GGY 160 (190)
Q Consensus 88 ~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~s~~-------~aL 160 (190)
-..|...+..++..+..+++...... +.+ -.+++|.........-|+...|+-+...|...+. .++
T Consensus 161 ~~Vra~A~raLG~l~~~~a~~~L~~a----l~d---~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~l 233 (410)
T TIGR02270 161 ALVRAAALRALGELPRRLSESTLRLY----LRD---SDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLL 233 (410)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHH----HcC---CCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHH
Confidence 35677778888888877777665433 333 2677888888887778888888877775655443 344
Q ss_pred eccCCHHHHHHHHHH
Q psy5269 161 GVTTAPGTSRYAVQL 175 (190)
Q Consensus 161 g~t~d~~~l~~~L~~ 175 (190)
+...++..+..+..+
T Consensus 234 al~~~~~a~~~L~~l 248 (410)
T TIGR02270 234 AVAGGPDAQAWLREL 248 (410)
T ss_pred HhCCchhHHHHHHHH
Confidence 444555555544444
No 17
>KOG3192|consensus
Probab=27.17 E-value=1.9e+02 Score=22.58 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHH-hcCCCCCCCCchHHHHHHHhh-------------cCC--HHHHHHHHHHHHhcCC---------cee
Q psy5269 106 TLTLARAKFEAH-VKGTAILPADLRSPVYRAAIA-------------GGS--EATYQQLLKVIHNYGH---------GGY 160 (190)
Q Consensus 106 c~~~a~~~f~~~-~~~~~~ip~d~r~~vy~~~~~-------------~g~--~~~~~~l~~~~~~s~~---------~aL 160 (190)
|...+++.|..| +.-..+|||+.-...|..--+ .++ .+.=..+-+.|++-++ ...
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 455667778877 443445666655544432211 111 1112334444444333 444
Q ss_pred e-------ccCCHHHHHHHHHH--HHHhcCCCCcc
Q psy5269 161 G-------VTTAPGTSRYAVQL--VTRALDPTSSL 186 (190)
Q Consensus 161 g-------~t~d~~~l~~~L~~--~l~~~dp~~~~ 186 (190)
| .+.||.+|-.+|++ .++..|-+.++
T Consensus 83 g~e~~sne~stDpe~Lmevle~~E~IS~~~De~~l 117 (168)
T KOG3192|consen 83 GQEQTSNELSTDPEFLMEVLEYHEAISEMDDEEDL 117 (168)
T ss_pred CCCCchhhhccCHHHHHHHHHHHHHHHhccCcHHH
Confidence 4 55599999999986 44555444333
No 18
>smart00315 RGS Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
Probab=25.39 E-value=2.2e+02 Score=19.31 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=44.0
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|.+|+..--.. +.+. +-..+-.+-....+....+.|..+|+.|+... ..
T Consensus 3 ~~il~d~~~~~~F~~fl~~~~~~--e~l~-------------F~~~v~~~~~~~~~~~~~~~a~~I~~~yi~~~s~~~~n 67 (118)
T smart00315 3 ESLLSDPIGRLLFREFLESEFSE--ENLE-------------FWLAVEEFKKAEDDEERIAKAREIYDKFLSPNAPKEVN 67 (118)
T ss_pred HHHhcChHHHHHHHHHHHHhcch--HhHH-------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcee
Confidence 45677888889999998864321 2221 11111111111223678999999999999853 24
Q ss_pred CCCCchHHHHH
Q psy5269 124 LPADLRSPVYR 134 (190)
Q Consensus 124 ip~d~r~~vy~ 134 (190)
||+.+|..+-.
T Consensus 68 i~~~~~~~i~~ 78 (118)
T smart00315 68 LDSDLREKIEE 78 (118)
T ss_pred CCHHHHHHHHH
Confidence 77777766653
No 19
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.06 E-value=2.3e+02 Score=19.22 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=30.3
Q ss_pred cCchhHHHHHHHHHHHhhhhhhhc--CCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy5269 52 SNTEYHHLFYQFGVQILKPAGQSL--GWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAK 113 (190)
Q Consensus 52 ~~~~~~~~~~~f~~~l~~~~~~~l--g~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~ 113 (190)
.+.+..+..=+-+.+++....+.+ ||.. .+ .+++.++..++++.+..|-+.
T Consensus 30 ~~~~vre~il~ci~qil~~~~~~i~SGW~~---------if--~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 30 PSIDVRELILECILQILQSRGENIKSGWKV---------IF--SILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHhHHHHHhccHH---------HH--HHHHHHHhCCCccHHHHHHHH
Confidence 344566666666667777666666 6654 22 245566666667666666544
No 20
>PF13606 Ank_3: Ankyrin repeat
Probab=24.42 E-value=1.1e+02 Score=16.20 Aligned_cols=19 Identities=5% Similarity=0.029 Sum_probs=14.1
Q ss_pred HHHHHHhcCChHHHHHHHH
Q psy5269 94 IISRLGVYGDPDTLTLARA 112 (190)
Q Consensus 94 il~~ac~~g~~~c~~~a~~ 112 (190)
.+.+||..|+.++++...+
T Consensus 5 ~Lh~A~~~g~~e~v~~Ll~ 23 (30)
T PF13606_consen 5 PLHLAASNGNIEIVKYLLE 23 (30)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 5678999998887766543
No 21
>PLN03218 maturation of RBCL 1; Provisional
Probab=24.13 E-value=7.7e+02 Score=25.05 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhc
Q psy5269 92 SLIISRLGVYGDPDTLTLARAKFEAHVK 119 (190)
Q Consensus 92 ~~il~~ac~~g~~~c~~~a~~~f~~~~~ 119 (190)
..++...|+.|+. +.|.+.|+....
T Consensus 583 naLI~ay~k~G~l---deA~elf~~M~e 607 (1060)
T PLN03218 583 GALMKACANAGQV---DRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHHCCCH---HHHHHHHHHHHH
Confidence 3445555555542 455555555443
No 22
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=21.91 E-value=1.1e+02 Score=18.39 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.0
Q ss_pred ChHHHHHHHHHHHHHh
Q psy5269 103 DPDTLTLARAKFEAHV 118 (190)
Q Consensus 103 ~~~c~~~a~~~f~~~~ 118 (190)
-+.|++.|+.+|+...
T Consensus 29 ~~HcI~wAk~~f~~~F 44 (45)
T PF10585_consen 29 PEHCIEWAKDLFEELF 44 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh
Confidence 4679999999998753
No 23
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=21.32 E-value=3.4e+02 Score=19.89 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=41.5
Q ss_pred CCchHh--hhhhhhcccccccccccccccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHH-HHHHHHh
Q psy5269 24 PKYTSW--LTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSL-IISRLGV 100 (190)
Q Consensus 24 ~~~~~W--~~~~L~~l~~~~~~~~~~~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~-il~~ac~ 100 (190)
|+--|| -...+..| ...-.+.+.+..+-+.+.+-+... +.++ ...++.+ ++..+..
T Consensus 10 Ts~d~wGp~~~~m~eI----------a~~t~~~~~~~~Im~~l~kRL~~~----------~k~W-R~vyKaL~lleyLl~ 68 (123)
T cd03571 10 TSNDPWGPSGTLMAEI----------ARATYNYVEFQEIMSMLWKRLNDK----------GKNW-RHVYKALTLLEYLLK 68 (123)
T ss_pred cCCCCCCCCHHHHHHH----------HHHhCCHHHHHHHHHHHHHHHHhc----------cccH-HHHHHHHHHHHHHHH
Confidence 444567 55667777 555444444444333333333222 1222 4445544 7899999
Q ss_pred cCChHHHHHHHHHHHH
Q psy5269 101 YGDPDTLTLARAKFEA 116 (190)
Q Consensus 101 ~g~~~c~~~a~~~f~~ 116 (190)
.|.+.|+..++.....
T Consensus 69 nGse~vv~~~r~~~~~ 84 (123)
T cd03571 69 NGSERVVDDARENLYI 84 (123)
T ss_pred hCCHHHHHHHHHhHHH
Confidence 9999999999876443
No 24
>KOG1861|consensus
Probab=21.08 E-value=6.7e+02 Score=23.22 Aligned_cols=114 Identities=10% Similarity=0.023 Sum_probs=63.3
Q ss_pred hhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC------CCCCCCchHHHHHHHhhcCC
Q psy5269 68 LKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT------AILPADLRSPVYRAAIAGGS 141 (190)
Q Consensus 68 ~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~------~~ip~d~r~~vy~~~~~~g~ 141 (190)
+++.|=+|.-.+++++---..-|+..+...-|.+-...--.++-+.|+...+|- +.....+-++==++|+..||
T Consensus 284 lEKsyLRLTsAPdPstVRP~~VL~ksL~~vkdk~k~~~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARIALEkGD 363 (540)
T KOG1861|consen 284 LEKSYLRLTSAPDPSTVRPLEVLKKSLCLVKDKWKAKANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYETHARIALEKGD 363 (540)
T ss_pred HHHhHhhhccCCCccccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhhheeccceeeeeehhhhHHHHhcCC
Confidence 445555565555554433345666677777776654444456666777666652 22333334444466777899
Q ss_pred HHHHHHHHHHHHhcCCceeeccCCHHHHHHHHHHHHHhcC
Q psy5269 142 EATYQQLLKVIHNYGHGGYGVTTAPGTSRYAVQLVTRALD 181 (190)
Q Consensus 142 ~~~~~~l~~~~~~s~~~aLg~t~d~~~l~~~L~~~l~~~d 181 (190)
-++|++...+.+.--..++-|..-+-+.-++|-+++....
T Consensus 364 ~~EfNQCQtQLk~LY~egipg~~~EF~AYriLY~i~tkN~ 403 (540)
T KOG1861|consen 364 LEEFNQCQTQLKALYSEGIPGAYLEFTAYRILYYIFTKNY 403 (540)
T ss_pred HHHHHHHHHHHHHHHccCCCCchhhHHHHHHHHHHHhcCc
Confidence 9999887665544333223222444444555555554443
No 25
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=20.93 E-value=3.6e+02 Score=20.00 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=47.5
Q ss_pred cCchhHHHHHHHH------HHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcC---ChHHH-------HHHHHHHH
Q psy5269 52 SNTEYHHLFYQFG------VQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYG---DPDTL-------TLARAKFE 115 (190)
Q Consensus 52 ~~~~~~~~~~~f~------~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g---~~~c~-------~~a~~~f~ 115 (190)
++++....|.+|. ..-+.+....+|-+|..+.+..-.+.|..+ .....++ +...+ +.+.+.|+
T Consensus 27 ~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~-~lks~~~~~~d~aiL~~~e~gEd~~~~~y~ 105 (139)
T TIGR02284 27 KDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWG-KIRATLTPNDDYVVLEEAERGEDRAKKAYD 105 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHhHHHHHHHHH
Confidence 4566666676665 334778888899888766666555555443 2222222 22222 34456677
Q ss_pred HHhcCCCCCCCCchHHHH
Q psy5269 116 AHVKGTAILPADLRSPVY 133 (190)
Q Consensus 116 ~~~~~~~~ip~d~r~~vy 133 (190)
+-+.+. .+||+.|..|=
T Consensus 106 ~aL~~~-~l~~~~r~~l~ 122 (139)
T TIGR02284 106 ETLADQ-DTPAAARDVAL 122 (139)
T ss_pred HHHhcC-CCChHHHHHHH
Confidence 766653 58998887664
Done!