Query psy5269
Match_columns 190
No_of_seqs 121 out of 1172
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:03:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjo_A Endoplasmic reticulum a 100.0 1.1E-33 3.8E-38 247.6 16.6 162 3-178 119-295 (419)
2 2xdt_A Endoplasmic reticulum a 100.0 9.3E-31 3.2E-35 247.8 15.4 162 3-178 602-778 (897)
3 3se6_A Endoplasmic reticulum a 100.0 3.8E-30 1.3E-34 244.9 15.1 162 3-178 670-846 (967)
4 4fke_A Aminopeptidase N; zinc 100.0 1.8E-29 6.2E-34 239.3 16.0 165 3-177 605-785 (909)
5 1z5h_A Tricorn protease intera 99.9 5.3E-25 1.8E-29 205.8 7.6 149 3-178 519-677 (780)
6 2gtq_A Aminopeptidase N; alani 98.8 3.1E-10 1.1E-14 107.2 -0.9 163 5-184 580-772 (867)
7 1k1a_A B-cell lymphoma 3-encod 40.6 66 0.0023 23.5 6.1 55 95-150 13-67 (241)
8 1cmz_A Protein (GAIP (G-alpha 27.7 1.3E+02 0.0044 21.2 5.6 72 48-134 25-100 (152)
9 2oj4_A RGS3, regulator of G-pr 25.9 1.5E+02 0.0053 19.9 5.9 70 48-132 12-85 (127)
10 2rfa_A Transient receptor pote 25.7 1.1E+02 0.0037 22.3 5.1 58 94-151 40-97 (232)
11 1vdy_A Hypothetical protein (R 25.5 1.5E+02 0.0053 21.2 5.6 29 88-116 65-94 (140)
12 2kkc_A Sequestosome-1; P62, PB 25.4 26 0.00089 24.0 1.3 42 42-83 22-73 (102)
13 1wmh_B Partitioning defective- 24.9 31 0.0011 22.9 1.5 27 41-69 16-42 (86)
14 2af0_A Regulator of G-protein 24.4 1.8E+02 0.0062 20.2 5.9 71 48-133 28-102 (146)
15 1agr_E RGS4; GI-alpha-1, hydro 23.7 2.2E+02 0.0074 21.5 6.5 71 48-133 64-138 (205)
16 2ihd_A RGS8, regulator of G-pr 23.7 1.8E+02 0.0061 20.7 5.7 71 48-133 40-114 (155)
17 2crp_A RGS5, regulator of G-pr 23.6 1.9E+02 0.0064 20.3 5.8 71 48-133 30-104 (150)
18 1zv4_X RGS17, regulator of G-p 22.6 2.1E+02 0.0073 20.3 6.7 71 48-133 38-112 (158)
19 3c7l_A Regulator of G-protein 22.4 1.6E+02 0.0056 20.3 5.2 71 48-133 23-97 (137)
20 2rfa_A Transient receptor pote 22.3 2.1E+02 0.0073 20.6 6.2 58 95-152 158-220 (232)
21 1wgn_A UBAP1, ubiquitin associ 20.8 69 0.0024 20.0 2.4 16 169-184 47-62 (63)
No 1
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=247.59 Aligned_cols=162 Identities=12% Similarity=0.066 Sum_probs=151.4
Q ss_pred cccccccHHHHHHhhcCcCCCCCchHh--hhhhhhcccccccccccccccccC---chhHHHHHHHHHHHhhhhhhhcCC
Q psy5269 3 AIECVIKVIFIMLEKKPFERLPKYTSW--LTSGLAERGLRQFRRIPVDLLLSN---TEYHHLFYQFGVQILKPAGQSLGW 77 (190)
Q Consensus 3 a~~G~i~~~~~l~l~~yL~~E~~~~~W--~~~~L~~l~~~~~~~~~~~~~l~~---~~~~~~~~~f~~~l~~~~~~~lg~ 77 (190)
|.+|.++|+.+|++++||++|++|+|| +.+.|+++ ..++.. ++.++.|++|+++++.|+++++||
T Consensus 119 a~ag~~~~~~~l~l~~yL~~E~~y~~w~~~~~~l~~l----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw 188 (419)
T 3rjo_A 119 VSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM----------YKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTW 188 (419)
T ss_dssp HHHTSSCHHHHHHHHGGGGGCCSHHHHHHHHHHHHHH----------HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHcCCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHH----------HHHHhccCchhHHHHHHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999 99999999 677753 567899999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCC--CCCCCchHHHHHHHhhcCCHHHHHHHHHHHHhc
Q psy5269 78 EPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTA--ILPADLRSPVYRAAIAGGSEATYQQLLKVIHNY 155 (190)
Q Consensus 78 ~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~--~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~s 155 (190)
++ ++++.+.++|..++++||.+|+++|++.|+++|++|+.++. +||||+|.+|||+++++ +++|++++++|+++
T Consensus 189 ~~--~~~~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~--~~~~~~l~~~y~~s 264 (419)
T 3rjo_A 189 TD--EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS--TEGWDFLYSKYQFS 264 (419)
T ss_dssp SC--CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS--HHHHHHHHHHHHHC
T ss_pred CC--CchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC--HHHHHHHHHHHhcC
Confidence 85 68999999999999999999999999999999999998754 59999999999999987 89999999999999
Q ss_pred CC--------ceeeccCCHHHHHHHHHHHHH
Q psy5269 156 GH--------GGYGVTTAPGTSRYAVQLVTR 178 (190)
Q Consensus 156 ~~--------~aLg~t~d~~~l~~~L~~~l~ 178 (190)
++ .||||++||++++++|+++++
T Consensus 265 ~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~ 295 (419)
T 3rjo_A 265 LSSTEKSQIEFALCRTQNKEKLQWLLDESFK 295 (419)
T ss_dssp CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 87 999999999999999999875
No 2
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=99.97 E-value=9.3e-31 Score=247.77 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=152.2
Q ss_pred cccccccHHHHHHhhcCcCCCCCchHh--hhhhhhcccccccccccccccccCchhH---HHHHHHHHHHhhhhhhhcCC
Q psy5269 3 AIECVIKVIFIMLEKKPFERLPKYTSW--LTSGLAERGLRQFRRIPVDLLLSNTEYH---HLFYQFGVQILKPAGQSLGW 77 (190)
Q Consensus 3 a~~G~i~~~~~l~l~~yL~~E~~~~~W--~~~~L~~l~~~~~~~~~~~~~l~~~~~~---~~~~~f~~~l~~~~~~~lg~ 77 (190)
|.+|.++++.+|+++.||++|++|+|| +.+.|.++ ..++.+++.+ +.|++|+++++.|+++++||
T Consensus 602 a~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~ 671 (897)
T 2xdt_A 602 VSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM----------YKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTW 671 (897)
T ss_dssp HTTTSSCHHHHHHHHGGGGGCCCHHHHHHHHHHHHHH----------HHHHHTSSCHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHcCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH----------HHHhcCChhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999 99999999 6777777666 89999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC--CCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHhc
Q psy5269 78 EPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT--AILPADLRSPVYRAAIAGGSEATYQQLLKVIHNY 155 (190)
Q Consensus 78 ~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~--~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~s 155 (190)
+. ++++.+..+|..++.+||.+|+++|++.|+++|++|+.++ ++||||+|.+|||+++ |++++|++++++|+++
T Consensus 672 ~~--~~~~~~~~lr~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~--g~~~~~~~l~~~y~~~ 747 (897)
T 2xdt_A 672 TD--EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA--QSTEGWDFLYSKYQFS 747 (897)
T ss_dssp SC--CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT--TSHHHHHHHHHHHTTC
T ss_pred CC--CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec--CCHHHHHHHHHHHHcc
Confidence 98 6889999999999999999999999999999999999875 3799999999999998 9999999999999998
Q ss_pred CC--------ceeeccCCHHHHHHHHHHHHH
Q psy5269 156 GH--------GGYGVTTAPGTSRYAVQLVTR 178 (190)
Q Consensus 156 ~~--------~aLg~t~d~~~l~~~L~~~l~ 178 (190)
++ .||||++|+++++++|+++++
T Consensus 748 ~~~~ek~~ll~aL~c~~~~~~l~~~L~~~~~ 778 (897)
T 2xdt_A 748 LSSTEKSQIEFALCRTQNKEKLQWLLDESFK 778 (897)
T ss_dssp CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 86 999999999999999999875
No 3
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=99.97 E-value=3.8e-30 Score=244.91 Aligned_cols=162 Identities=12% Similarity=0.090 Sum_probs=150.7
Q ss_pred cccccccHHHHHHhhcCcCCCCCchHh--hhhhhhccccccccccccccccc-C--chhHHHHHHHHHHHhhhhhhhcCC
Q psy5269 3 AIECVIKVIFIMLEKKPFERLPKYTSW--LTSGLAERGLRQFRRIPVDLLLS-N--TEYHHLFYQFGVQILKPAGQSLGW 77 (190)
Q Consensus 3 a~~G~i~~~~~l~l~~yL~~E~~~~~W--~~~~L~~l~~~~~~~~~~~~~l~-~--~~~~~~~~~f~~~l~~~~~~~lg~ 77 (190)
|.+|.++++.+|++++||++|++|+|| +++.|.++ ..++. . ++.++.|++|+++++.|+++++||
T Consensus 670 a~~g~~~~~~~l~l~~~l~~E~~~~~w~~a~~~l~~l----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~ 739 (967)
T 3se6_A 670 VGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESF----------YHMMDRRNISDISENLKRYLLQYFKPVIDRQSW 739 (967)
T ss_dssp HHTTSSCHHHHHHHTTGGGTCCCHHHHHHHHHHHHHH----------HHHHHHSCCHHHHHHHHHHHHHTTHHHHHHCCS
T ss_pred HHcCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH----------HHHHhccCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 568999999999999999999999999 99999999 66765 2 577899999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCC--CCCCCchHHHHHHHhhcCCHHHHHHHHHHHHhc
Q psy5269 78 EPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTA--ILPADLRSPVYRAAIAGGSEATYQQLLKVIHNY 155 (190)
Q Consensus 78 ~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~--~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~s 155 (190)
++ ++++.++++|..++.+||.+|+++|++.|+++|++|+.++. +||||+|.+|||+|+++ +++|++++++|+++
T Consensus 740 ~~--~~~~~~~~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~Vyc~~~~~--~~~~~~l~~~y~~s 815 (967)
T 3se6_A 740 SD--KGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGAQT--TAGWNYLLEQYELS 815 (967)
T ss_dssp SC--CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHTTS--HHHHHHHHHHHHHC
T ss_pred CC--CCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhhHhHhhhhcc--HHHHHHHHHHHhcc
Confidence 84 78999999999999999999999999999999999998754 59999999999999875 89999999999999
Q ss_pred CC--------ceeeccCCHHHHHHHHHHHHH
Q psy5269 156 GH--------GGYGVTTAPGTSRYAVQLVTR 178 (190)
Q Consensus 156 ~~--------~aLg~t~d~~~l~~~L~~~l~ 178 (190)
++ .||||++|+++++++|+++++
T Consensus 816 ~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~ 846 (967)
T 3se6_A 816 MSSAEQNKILYALSTSKHQEKLLKLIELGME 846 (967)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHhC
Confidence 87 999999999999999999765
No 4
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=99.96 E-value=1.8e-29 Score=239.26 Aligned_cols=165 Identities=17% Similarity=0.182 Sum_probs=154.0
Q ss_pred cccccccHHHHHHhhcCcCCCCCchHh--hhhhhhcccccccccccccccccCchhHHHHHHHHHHHhhhhhhhcCCccC
Q psy5269 3 AIECVIKVIFIMLEKKPFERLPKYTSW--LTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPK 80 (190)
Q Consensus 3 a~~G~i~~~~~l~l~~yL~~E~~~~~W--~~~~L~~l~~~~~~~~~~~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~ 80 (190)
|.+|.++++.+|+++.||++|++|+|| +.+.|.++ ..++.+++.+..|++|+++++.|+++++||...
T Consensus 605 a~ag~~~~~~~l~l~~~l~~E~~y~~w~~~~~~l~~l----------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 674 (909)
T 4fke_A 605 ATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYF----------SLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTK 674 (909)
T ss_dssp HHTTSSCHHHHHHTTGGGGGCCSHHHHHHHHHHHHHH----------HHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHccCccHHHHHHHHHHHHHH----------HHHhcCchHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 578999999999999999999999999 99999999 788888899999999999999999999976532
Q ss_pred ----CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcC--CCCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHh
Q psy5269 81 ----ANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKG--TAILPADLRSPVYRAAIAGGSEATYQQLLKVIHN 154 (190)
Q Consensus 81 ----~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~--~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~ 154 (190)
.++++.++.+|..++.+||.+|+++|++.|+++|++|+.+ ..+||||+|.+|||+++++|++++|++++++|++
T Consensus 675 ~~~~~~~~~~~~~lr~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~ 754 (909)
T 4fke_A 675 NWTERPENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQ 754 (909)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3578899999999999999999999999999999999986 3579999999999999999999999999999999
Q ss_pred cCC--------ceeeccCCHHHHHHHHHHHH
Q psy5269 155 YGH--------GGYGVTTAPGTSRYAVQLVT 177 (190)
Q Consensus 155 s~~--------~aLg~t~d~~~l~~~L~~~l 177 (190)
+++ .||||++|+++++++|++++
T Consensus 755 ~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 755 AQLVNEADKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp CCSHHHHHHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 987 99999999999999999954
No 5
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=99.91 E-value=5.3e-25 Score=205.81 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=137.2
Q ss_pred cccccccHHHHHHhhcCcCCCCCchHh--hhhhhhcccccccccccccccccCchhHHHHHHHHHHHhhhhhhhcCCccC
Q psy5269 3 AIECVIKVIFIMLEKKPFERLPKYTSW--LTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPK 80 (190)
Q Consensus 3 a~~G~i~~~~~l~l~~yL~~E~~~~~W--~~~~L~~l~~~~~~~~~~~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~ 80 (190)
|.+|.++++.+++++.||.+|++|.|| +.+.|.++ ..+ . +.|++|+++++.|+++++| ..
T Consensus 519 ~~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~~----------~~~--~----~~~~~~~~~l~~~~~~~l~--~~ 580 (780)
T 1z5h_A 519 LLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYL----------RML--T----HAFDDDARAFCRSRMQFLT--GK 580 (780)
T ss_dssp HHHTSSCHHHHHHHHGGGTTCCCHHHHHHHHHHHHHH----------HTT--C----STTHHHHHHHHHHHHHHHT--TC
T ss_pred HHcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHH----------Hhc--h----HHHHHHHHHHHHHHHHHcC--CC
Confidence 568999999999999999999999999 88999999 454 2 3489999999999999999 32
Q ss_pred CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHHHhcCC---
Q psy5269 81 ANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHNYGH--- 157 (190)
Q Consensus 81 ~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~~~s~~--- 157 (190)
+++.+..+|..++.+||.+|+++|++ |+++|++| ..||||+|.+|||.++++|++ |++++++|+++++
T Consensus 581 --~~~~~~~~r~~~~~~a~~~~~~~~~~-a~~~f~~~----~~i~~~lr~~v~~~~~~~g~~--~~~l~~~~~~~~~~~~ 651 (780)
T 1z5h_A 581 --QDENLKIALGRVSRLYVMVDESYAEE-MSKLFKDF----DSAEPEMRSSIATAYALVTGD--LKGLLEKFRSVDRDED 651 (780)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCHHHHHH-HHTTGGGG----GGSCHHHHHHHHHHHHHHTCC--HHHHHHHHHSCCSHHH
T ss_pred --CChHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHhc----CCCCHHHHHHHHHHHHHcCcH--HHHHHHHHhcCCCHHH
Confidence 88899999999999999999999999 99999998 469999999999999999987 9999999999886
Q ss_pred -----ceeeccCCHHHHHHHHHHHHH
Q psy5269 158 -----GGYGVTTAPGTSRYAVQLVTR 178 (190)
Q Consensus 158 -----~aLg~t~d~~~l~~~L~~~l~ 178 (190)
.||||++|+++++++|+++++
T Consensus 652 ~~~~l~al~~~~~~~~~~~~l~~~~~ 677 (780)
T 1z5h_A 652 RVRIISAFGKLKSNTDLSTVYGMVEK 677 (780)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHhc
Confidence 999999999999999999875
No 6
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=98.82 E-value=3.1e-10 Score=107.18 Aligned_cols=163 Identities=10% Similarity=-0.039 Sum_probs=119.6
Q ss_pred cccc-c-HHHHHHhhcCcC-CCC-CchHh--hhh--hhhcccccccccccccccc--cCchh----HHHHHH-HHHHH--
Q psy5269 5 ECVI-K-VIFIMLEKKPFE-RLP-KYTSW--LTS--GLAERGLRQFRRIPVDLLL--SNTEY----HHLFYQ-FGVQI-- 67 (190)
Q Consensus 5 ~G~i-~-~~~~l~l~~yL~-~E~-~~~~W--~~~--~L~~l~~~~~~~~~~~~~l--~~~~~----~~~~~~-f~~~l-- 67 (190)
+|.. + +..+++++.++. +|+ |+.+| ++. .+.++ ...+ .+++. .+.+++ +...+
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~l~lp~~~~l----------~~~~~~~d~~~~~~~~~~~~~~~~~~l~~ 649 (867)
T 2gtq_A 580 DGVELPKHEKLLAAVEKVISDDLLDNAFKALLLGVPSEAEL----------WDGAENIDPLRYHQAREALLDTLAVHFLP 649 (867)
T ss_dssp HTCCCCCCHHHHHHHHHHHHCSSSCHHHHHHHTCCCCHHHH----------TTTCSSBCHHHHHHHHHHHHHHHHHHTHH
T ss_pred cCCCCCchHHHHHHHHHHhcCcCCCHHHHHHHhcCCCHHHH----------HhhcccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4544 6 788999999976 777 99999 555 56677 3322 23332 234444 55556
Q ss_pred -hhhhhhhc-----C-CccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcC
Q psy5269 68 -LKPAGQSL-----G-WEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGG 140 (190)
Q Consensus 68 -~~~~~~~l-----g-~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g 140 (190)
+.++|+++ | |++++ ++...+.||..+++++|..| ++|++.|++.|.++..+-+..++.++ +++.+...+
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~-~~~~~r~lr~~~l~~l~~~~-~~~~~~a~~~~~~~a~nmt~~~~al~--~l~~~~~~~ 725 (867)
T 2gtq_A 650 KWHELNRQAAKQENQSYEYSP-EAAGWRTLRNVCRAFVLRAD-PAHIETVAEKYGEMAQNMTHEWGILS--AVNGNESDT 725 (867)
T ss_dssp HHHHHHHHHHHHHTTCCSCCH-HHHHHHHHHHHHHHHHHHHC-TTHHHHHHHTHHHHCSSHHHHHHHHH--HHTTCCSHH
T ss_pred HHHHHHHHhhccCCCCCCCCh-HHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHhCCCHhHHHHHHH--HHHhcCccc
Confidence 89999977 7 88775 88889999999999999999 99999999999976544333455555 555554445
Q ss_pred CHHHHHHHHHHHHhcCC------ceeeccCCHHHHHHHHHHHHHhcCCCC
Q psy5269 141 SEATYQQLLKVIHNYGH------GGYGVTTAPGTSRYAVQLVTRALDPTS 184 (190)
Q Consensus 141 ~~~~~~~l~~~~~~s~~------~aLg~t~d~~~l~~~L~~~l~~~dp~~ 184 (190)
+++.++.+.++|++... ...|++.+|.++++++.+. .+|.-
T Consensus 726 ~~~~~~~f~~~~~~~~~~~~k~~~~~a~~~~~~~~~~v~~l~---~~~~f 772 (867)
T 2gtq_A 726 RNRLLAQFADKFSDDALVMDKYFALVGSSRRSDTLQQVRTAL---QHPKF 772 (867)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHCCSTTHHHHHHHHT---TSTTC
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCChHHHHHHHHHh---hCcCC
Confidence 67788989998887765 3448999999999999994 55543
No 7
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.61 E-value=66 Score=23.50 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=23.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHH
Q psy5269 95 ISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLK 150 (190)
Q Consensus 95 l~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~ 150 (190)
+.+||..|+.++++...+.+...-.+.. .......+.+..++..|+.+..+.+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 3455666666655555444333211111 111112234444555555554444443
No 8
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=27.65 E-value=1.3e+02 Score=21.17 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=43.3
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|++|+.+-... +.+ .+-..+-.+-...+.......|..+|+.|+... ..
T Consensus 25 ~~iL~~p~~~~~F~~Fl~~e~s~--Enl-------------~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evn 89 (152)
T 1cmz_A 25 DKLMHSPAGRSVFRAFLRTEYSE--ENM-------------LFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKEVS 89 (152)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTCC--HHH-------------HHHHHHHHGGGTCCSHHHHHHHHHHHHHTTTCSSSCCCS
T ss_pred HHHHCChHHHHHHHHHHHHhcCh--hhH-------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCceee
Confidence 67778888899999998864321 111 111111111111234567889999999999742 34
Q ss_pred CCCCchHHHHH
Q psy5269 124 LPADLRSPVYR 134 (190)
Q Consensus 124 ip~d~r~~vy~ 134 (190)
||..+|..+-.
T Consensus 90 i~~~~r~~i~~ 100 (152)
T 1cmz_A 90 LDSRVREGINK 100 (152)
T ss_dssp CCSHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77777766554
No 9
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=25.86 E-value=1.5e+02 Score=19.87 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=39.9
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|.+|+.+-. .-+.+. +-..+-.+-...........|..+|+.|+... .+
T Consensus 12 ~~iL~~~~g~~~F~~Fl~~e~--~~enl~-------------Fw~~ve~~k~~~~~~~~~~~a~~I~~~yi~~~s~~evn 76 (127)
T 2oj4_A 12 EKLLVHKYGLAVFQAFLRTEF--SEENLE-------------FWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVN 76 (127)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT--CHHHHH-------------HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTCCC
T ss_pred HHHHCCHHHHHHHHHHHHHcC--CHHHHH-------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHccCCCCcCcc
Confidence 667788888999999987632 111111 00000000000122467889999999999752 34
Q ss_pred CCCCchHHH
Q psy5269 124 LPADLRSPV 132 (190)
Q Consensus 124 ip~d~r~~v 132 (190)
||..+|..+
T Consensus 77 i~~~~r~~i 85 (127)
T 2oj4_A 77 LDSYTREHT 85 (127)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 666666554
No 10
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.73 E-value=1.1e+02 Score=22.27 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=35.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHH
Q psy5269 94 IISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKV 151 (190)
Q Consensus 94 il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~ 151 (190)
.+.+||..|+.++++...+.-................+.+..|+..|+.+..+.+++.
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 97 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhC
Confidence 4668999999988877765433221111111111234567778888888877777764
No 11
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=25.49 E-value=1.5e+02 Score=21.23 Aligned_cols=29 Identities=10% Similarity=-0.064 Sum_probs=23.0
Q ss_pred HHHHHH-HHHHHHhcCChHHHHHHHHHHHH
Q psy5269 88 TLLRSL-IISRLGVYGDPDTLTLARAKFEA 116 (190)
Q Consensus 88 ~~lR~~-il~~ac~~g~~~c~~~a~~~f~~ 116 (190)
..++.+ +|..+|..|.+.|+..+++.-..
T Consensus 65 vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~ 94 (140)
T 1vdy_A 65 VKQKALRLIKYAVGKSGSEFRREMQRNSVA 94 (140)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHTTHH
T ss_pred eeehHHHHHHHHHHhCCHHHHHHHHHhHHH
Confidence 455554 89999999999999999877543
No 12
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=25.38 E-value=26 Score=24.05 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=27.6
Q ss_pred ccccccccccc-------CchhHHHHHHHHHHHhhhhhh---hcCCccCCCC
Q psy5269 42 FRRIPVDLLLS-------NTEYHHLFYQFGVQILKPAGQ---SLGWEPKANE 83 (190)
Q Consensus 42 ~~~~~~~~~l~-------~~~~~~~~~~f~~~l~~~~~~---~lg~~~~~~e 83 (190)
+|||++..-.. .+..+..|...++.++..+-. .+.|....||
T Consensus 22 iRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGD 73 (102)
T 2kkc_A 22 IRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGD 73 (102)
T ss_dssp EEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCC
T ss_pred eEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCC
Confidence 59999875321 123688899888888875554 3567664444
No 13
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=24.89 E-value=31 Score=22.95 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=19.9
Q ss_pred ccccccccccccCchhHHHHHHHHHHHhh
Q psy5269 41 QFRRIPVDLLLSNTEYHHLFYQFGVQILK 69 (190)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~f~~~l~~ 69 (190)
.||||++..-- +..++.|...++.+..
T Consensus 16 E~RRFs~d~~~--~~~fe~f~~lv~~lh~ 42 (86)
T 1wmh_B 16 EFRRFALPRAS--VSGFQEFSRLLRAVHQ 42 (86)
T ss_dssp EEEEEEEEGGG--CCCHHHHHHHHHHHTT
T ss_pred eeeEeEccCCC--CCCHHHHHHHHHHHcC
Confidence 37999996442 4467888888888876
No 14
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=24.39 E-value=1.8e+02 Score=20.19 Aligned_cols=71 Identities=10% Similarity=-0.007 Sum_probs=41.7
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|.+|+.+-.. -+.+ .+-..+-.+-...+..+....|..+|+.|+... .+
T Consensus 28 ~~iL~~p~g~~~F~~Fl~~e~s--~Enl-------------~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evN 92 (146)
T 2af0_A 28 DELLASKYGLAAFRAFLKSEFC--EENI-------------EFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKEIN 92 (146)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTC--THHH-------------HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSTTCTTCCC
T ss_pred HHHHCCHHHHHHHHHHHHHhcC--HHHH-------------HHHHHHHHHhccCCHHHHHHHHHHHHHHHCcCCCCcccC
Confidence 5677788888999999876322 1111 111111111111123568899999999999752 34
Q ss_pred CCCCchHHHH
Q psy5269 124 LPADLRSPVY 133 (190)
Q Consensus 124 ip~d~r~~vy 133 (190)
||..+|..+-
T Consensus 93 i~~~~r~~i~ 102 (146)
T 2af0_A 93 IDFQTKTLIA 102 (146)
T ss_dssp CCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 7776666544
No 15
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=23.70 E-value=2.2e+02 Score=21.53 Aligned_cols=71 Identities=8% Similarity=-0.027 Sum_probs=41.8
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|.+|+.+-.. -+.+ .+-..+-.+-......+....|..+|+.|+... ..
T Consensus 64 e~IL~dp~g~~~F~~FL~~e~s--~EnL-------------~Fw~ave~yk~~~~~~~~~~~A~~Iy~~YI~~~Sp~evN 128 (205)
T 1agr_E 64 ENLINHECGLAAFKAFLKSEYS--EENI-------------DFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVN 128 (205)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTC--THHH-------------HHHHHHHHHHHCCCTTTHHHHHHHHHHHHTSTTCTTCCC
T ss_pred HHHhcCHHHHHHHHHHHHHcCC--HHHH-------------HHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCchhhh
Confidence 5666778888888888876321 1111 111112222222235678899999999999752 34
Q ss_pred CCCCchHHHH
Q psy5269 124 LPADLRSPVY 133 (190)
Q Consensus 124 ip~d~r~~vy 133 (190)
||..+|..+-
T Consensus 129 I~~~~r~~i~ 138 (205)
T 1agr_E 129 LDSCTREETS 138 (205)
T ss_dssp CCHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 7776676553
No 16
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=23.69 E-value=1.8e+02 Score=20.67 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=41.3
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|.+|+.+-.. -+.+ .+-..+-.+-...+..+....|..+|+.|+... .+
T Consensus 40 ~~iL~dp~g~~~F~~FL~~e~s--~Enl-------------~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evN 104 (155)
T 2ihd_A 40 DVLLSHKYGVAAFRAFLKTEFS--EENL-------------EFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVN 104 (155)
T ss_dssp HHHHTSHHHHHHHHHHHHHTTC--THHH-------------HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTCCC
T ss_pred HHHHCCHHHHHHHHHHHHHhCC--HHHH-------------HHHHHHHHHhccCCHHHHHHHHHHHHHHHCcCCCccccC
Confidence 6677888888999999876432 1111 111111111011123567889999999999753 34
Q ss_pred CCCCchHHHH
Q psy5269 124 LPADLRSPVY 133 (190)
Q Consensus 124 ip~d~r~~vy 133 (190)
||..+|..+-
T Consensus 105 I~~~~r~~i~ 114 (155)
T 2ihd_A 105 IDFQTREATR 114 (155)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6766665543
No 17
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.58 E-value=1.9e+02 Score=20.27 Aligned_cols=71 Identities=13% Similarity=0.034 Sum_probs=41.4
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|.+|+.+-.. -+.+ .+-..+-.+-...+..+....|..+|+.|+... ..
T Consensus 30 ~~iL~~~~g~~~F~~Fl~~e~s--~Enl-------------~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evN 94 (150)
T 2crp_A 30 DKLLQNNYGLASFKSFLKSEFS--EENL-------------EFWIACEDYKKIKSPAKMAEKAKQIYEEFIQTEAPKEVN 94 (150)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTC--HHHH-------------HHHHHHHHHHTCCCTTHHHHHHHHHHHHTSSTTCSSCCS
T ss_pred HHHHCCHHHHHHHHHHHHHhcC--HHHH-------------HHHHHHHHHHccCCHHHHHHHHHHHHHHHccCCCCccCC
Confidence 5667788888899998876321 1111 111111111111224678899999999999742 34
Q ss_pred CCCCchHHHH
Q psy5269 124 LPADLRSPVY 133 (190)
Q Consensus 124 ip~d~r~~vy 133 (190)
||..+|..+-
T Consensus 95 i~~~~r~~i~ 104 (150)
T 2crp_A 95 IDHFTKDITM 104 (150)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6766665543
No 18
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=22.62 E-value=2.1e+02 Score=20.33 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=40.3
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|++|+.+-. .-+.+ .+-..+-.+-...+.......|..+|+.|+... ..
T Consensus 38 ~~iL~dp~g~~~F~~FL~~e~--s~Enl-------------~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evN 102 (158)
T 1zv4_X 38 DKMMKAPAGRNLFREFLRTEY--SEENL-------------LFWLACEDLKKEQNKKVIEEKARMIYEDYISILSPKEVS 102 (158)
T ss_dssp HHHHTSHHHHHHHHHHHHHTT--CHHHH-------------HHHHHHHHHHHCCSHHHHHHHHHHHHHHHTCCC-CCCCC
T ss_pred HHHhCCHHHHHHHHHHHHHcc--CHhHH-------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCCCCCceee
Confidence 566778888899999987632 11111 111111111111222467789999999999752 34
Q ss_pred CCCCchHHHH
Q psy5269 124 LPADLRSPVY 133 (190)
Q Consensus 124 ip~d~r~~vy 133 (190)
||..+|..+-
T Consensus 103 i~~~~r~~i~ 112 (158)
T 1zv4_X 103 LDSRVREVIN 112 (158)
T ss_dssp CCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 6666665543
No 19
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=22.39 E-value=1.6e+02 Score=20.26 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=40.4
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|++|+.+-.. -+.+ .+-..+-.+-...+..+....|..+|+.|+... .+
T Consensus 23 ~~iL~~p~g~~~F~~Fl~~e~s--~Enl-------------~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evN 87 (137)
T 3c7l_A 23 DLLLNSKNGVAAFHAFLKTEFS--EENL-------------EFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKEVN 87 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHTTTC--HHHH-------------HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTCCC
T ss_pred HHHHCChHHHHHHHHHHHHhCC--HHHH-------------HHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCCccCC
Confidence 5677788888999999875322 1111 110001011001112567889999999999752 34
Q ss_pred CCCCchHHHH
Q psy5269 124 LPADLRSPVY 133 (190)
Q Consensus 124 ip~d~r~~vy 133 (190)
||..+|..+-
T Consensus 88 i~~~~r~~i~ 97 (137)
T 3c7l_A 88 IDHETRELTK 97 (137)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6776666543
No 20
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.31 E-value=2.1e+02 Score=20.56 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=27.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhcCCC-----CCCCCchHHHHHHHhhcCCHHHHHHHHHHH
Q psy5269 95 ISRLGVYGDPDTLTLARAKFEAHVKGTA-----ILPADLRSPVYRAAIAGGSEATYQQLLKVI 152 (190)
Q Consensus 95 l~~ac~~g~~~c~~~a~~~f~~~~~~~~-----~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~ 152 (190)
+.+||..|+.+++....+++.+.-.+.. .+....-.+.+-.|+..|..+..+.|++..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 4556666666655444444433322110 112222234555666666666666666544
No 21
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.84 E-value=69 Score=19.97 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCCC
Q psy5269 169 SRYAVQLVTRALDPTS 184 (190)
Q Consensus 169 l~~~L~~~l~~~dp~~ 184 (190)
+.+.++++++-.||+|
T Consensus 47 vErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 47 IEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhCCCCCC
Confidence 5678899999999987
Done!