Query psy5269
Match_columns 190
No_of_seqs 121 out of 1172
Neff 7.6
Searched_HMMs 13730
Date Fri Aug 16 22:03:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5269.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5269hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wmhb_ d.15.2.2 (B:) Partitio 36.3 7.6 0.00055 24.1 1.6 24 42-67 13-36 (82)
2 d1k1aa_ d.211.1.1 (A:) bcl-3 { 35.2 46 0.0034 21.6 6.2 56 94-150 6-61 (228)
3 d1cmza_ a.91.1.1 (A:) Galpha i 34.5 51 0.0037 20.9 6.4 71 48-133 14-88 (128)
4 d1lsha1 a.118.4.1 (A:285-620) 28.6 19 0.0013 27.8 3.2 57 9-76 276-336 (336)
5 d2oyoa1 a.152.1.3 (A:10-195) U 26.8 77 0.0056 21.4 6.2 45 101-145 40-85 (186)
6 d2b5id1 g.18.1.1 (D:1-64) Inte 26.6 6.7 0.00049 22.9 0.1 8 40-47 32-39 (64)
7 d2jm5a1 a.91.1.1 (A:3-134) Reg 24.8 79 0.0057 19.9 5.7 78 48-141 14-95 (132)
8 d1te4a_ a.118.1.16 (A:) MTH187 22.2 48 0.0035 20.0 3.9 59 87-152 35-93 (111)
9 d1w98b2 a.74.1.1 (B:88-227) G1 18.9 68 0.0049 20.8 4.3 45 86-130 38-87 (140)
10 d1agre_ a.91.1.1 (E:) Regulato 16.9 1.2E+02 0.0087 18.9 7.5 72 48-134 14-89 (128)
No 1
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.34 E-value=7.6 Score=24.11 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=18.2
Q ss_pred cccccccccccCchhHHHHHHHHHHH
Q psy5269 42 FRRIPVDLLLSNTEYHHLFYQFGVQI 67 (190)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~f~~~l 67 (190)
||||++.+-- +..++.|...++.+
T Consensus 13 fRRFsl~r~~--~~~fe~F~~Lle~~ 36 (82)
T d1wmhb_ 13 FRRFALPRAS--VSGFQEFSRLLRAV 36 (82)
T ss_dssp EEEEEEEGGG--CCCHHHHHHHHHHH
T ss_pred EEEeeecccc--ccCHHHHHHHHHHH
Confidence 8999988653 44678888888776
No 2
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.23 E-value=46 Score=21.56 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=33.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHH
Q psy5269 94 IISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLK 150 (190)
Q Consensus 94 il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~ 150 (190)
.+.+||..|+.+|++...+.+.+.-.+.. .......+.+-.|+..|..+-.+.+++
T Consensus 6 pLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~ 61 (228)
T d1k1aa_ 6 PLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVT 61 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhccccccccccccc
Confidence 35688899999888777665544311111 111223345666777787776666665
No 3
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.51 E-value=51 Score=20.87 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=43.4
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|.+|+..-... + .-.+-..+-.+-...+.....+.|.++|+.|+... ..
T Consensus 14 ~~iL~d~~~~~~F~~fL~~~~~~--e-------------~l~Fw~~ve~fk~~~~~~~~~~~a~~Iy~~yi~~~s~~~~~ 78 (128)
T d1cmza_ 14 DKLMHSPAGRSVFRAFLRTEYSE--E-------------NMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKEVS 78 (128)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTCC--H-------------HHHHHHHHHHGGGTCCSHHHHHHHHHHHHHTTTCSSSCCCS
T ss_pred HHHHcChHHHHHHHHHHHHhcCH--H-------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhccCCCccCC
Confidence 56778888899999998654211 1 11111122222223345677888999999999742 33
Q ss_pred CCCCchHHHH
Q psy5269 124 LPADLRSPVY 133 (190)
Q Consensus 124 ip~d~r~~vy 133 (190)
+|+.+|..|-
T Consensus 79 i~~~~r~~i~ 88 (128)
T d1cmza_ 79 LDSRVREGIN 88 (128)
T ss_dssp CCSHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 6776776664
No 4
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}
Probab=28.64 E-value=19 Score=27.76 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=34.4
Q ss_pred cHHHHHHhhcCcCCCCCchHh--hhhhhhcccccccccccccccccCc--hhHHHHHHHHHHHhhhhhhhcC
Q psy5269 9 KVIFIMLEKKPFERLPKYTSW--LTSGLAERGLRQFRRIPVDLLLSNT--EYHHLFYQFGVQILKPAGQSLG 76 (190)
Q Consensus 9 ~~~~~l~l~~yL~~E~~~~~W--~~~~L~~l~~~~~~~~~~~~~l~~~--~~~~~~~~f~~~l~~~~~~~lg 76 (190)
+....-.+..++..|++.-|= +.++|..+ ... .++ .....-.+...+++.|.++++|
T Consensus 276 ~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~l----------a~s-~~P~~~~la~~a~~a~~ll~p~~~r~~ 336 (336)
T d1lsha1 276 SVALVSMVAVRLRREPNLQVASFVYSQMRSL----------SRS-SNPEFRDVAAACSVAIKMLGSKLDRLG 336 (336)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH----------TTC-CSGGGHHHHHHHHHHHTTSCSGGGGCC
T ss_pred CHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH----------HhC-CCcchHHHHHHHHHHHHHhCcccccCC
Confidence 344555677777788887775 55666555 221 222 2233334567778888888887
No 5
>d2oyoa1 a.152.1.3 (A:10-195) Uncharacterized protein Dgeo_1446 {Deinococcus geothermalis [TaxId: 68909]}
Probab=26.82 E-value=77 Score=21.42 Aligned_cols=45 Identities=9% Similarity=-0.095 Sum_probs=26.1
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHH-HhhcCCHHHH
Q psy5269 101 YGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRA-AIAGGSEATY 145 (190)
Q Consensus 101 ~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~-~~~~g~~~~~ 145 (190)
...|+.......++...+.....+|+.+|+.|... +..+|-.-.|
T Consensus 40 a~~P~~l~~~~~~~~~l~~~~~~L~~~~rEli~l~vs~~n~C~YC~ 85 (186)
T d2oyoa1 40 AVNGEQFLAWWNYFNLLLNKEGYLTNAERELVAVVVSGVNRCLYCA 85 (186)
T ss_dssp GGSHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCCcHHH
Confidence 34566666666666766655556888777665443 3334544333
No 6
>d2b5id1 g.18.1.1 (D:1-64) Interleukin-2 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.64 E-value=6.7 Score=22.93 Aligned_cols=8 Identities=63% Similarity=0.937 Sum_probs=6.6
Q ss_pred cccccccc
Q psy5269 40 RQFRRIPV 47 (190)
Q Consensus 40 ~~~~~~~~ 47 (190)
+|||||+-
T Consensus 32 rGFRRi~~ 39 (64)
T d2b5id1 32 RGFRRIKS 39 (64)
T ss_dssp TTEEECTT
T ss_pred ccceecCC
Confidence 78999965
No 7
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.79 E-value=79 Score=19.94 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=44.5
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|.+|+...-.. +. -.+-..+-.+-...+...+.+.|.++|+.|+... ..
T Consensus 14 ~~iL~d~~~~~~F~~fl~~~~~~------------e~---l~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~~i~ 78 (132)
T d2jm5a1 14 DKLLSHRDGLEAFTRFLKTEFSE------------EN---IEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVN 78 (132)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTCT------------TT---HHHHHHHHHHHTCCCHHHHHHHHHHHHHHTTCSSSSSCCC
T ss_pred HHHHcChHHHHHHHHHHhHcCCH------------HH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 55677888889999998764111 11 1111122222223355678889999999998853 23
Q ss_pred CCCCchHHHHHHHhhcCC
Q psy5269 124 LPADLRSPVYRAAIAGGS 141 (190)
Q Consensus 124 ip~d~r~~vy~~~~~~g~ 141 (190)
+|+.+|..+-- .+...+
T Consensus 79 ~~~~~~~~i~~-~~~~~~ 95 (132)
T d2jm5a1 79 LDFHTKEVITN-SITQPT 95 (132)
T ss_dssp CCHHHHHHHHH-HTTSCC
T ss_pred CCHHHHHHHHH-HhcCCC
Confidence 45555544443 334444
No 8
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.25 E-value=48 Score=19.99 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHhhcCCHHHHHHHHHHH
Q psy5269 87 NTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVI 152 (190)
Q Consensus 87 ~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ip~d~r~~vy~~~~~~g~~~~~~~l~~~~ 152 (190)
+...|..++...+..+++..+....+.+. +. .+.+|..+.....+-|++.....+.+..
T Consensus 35 ~~~vR~~a~~~L~~~~~~~~~~~L~~~l~----d~---~~~VR~~a~~aL~~i~~~~~~~~L~~ll 93 (111)
T d1te4a_ 35 DWRIRGAAAWIIGNFQDERAVEPLIKLLE----DD---SGFVRSGAARSLEQIGGERVRAAMEKLA 93 (111)
T ss_dssp CHHHHHHHHHHHGGGCSHHHHHHHHHHHH----HC---CTHHHHHHHHHHHHHCSHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcchhhhHHHHHhhhc----cc---hhHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 56788888888888888776665544443 32 4567766665555667766666665443
No 9
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.91 E-value=68 Score=20.82 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhc----C-ChHHHHHHHHHHHHHhcCCCCCCCCchH
Q psy5269 86 LNTLLRSLIISRLGVY----G-DPDTLTLARAKFEAHVKGTAILPADLRS 130 (190)
Q Consensus 86 ~~~~lR~~il~~ac~~----g-~~~c~~~a~~~f~~~~~~~~~ip~d~r~ 130 (190)
.+...|..++.|.... + ..+++-.|..+|+.|+.....++++...
T Consensus 38 i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v~~~~lq 87 (140)
T d1w98b2 38 LQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQ 87 (140)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhccccccHHHHh
Confidence 3456788888887753 4 7889999999999998754456765443
No 10
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.87 E-value=1.2e+02 Score=18.91 Aligned_cols=72 Identities=11% Similarity=-0.023 Sum_probs=43.6
Q ss_pred cccccCchhHHHHHHHHHHHhhhhhhhcCCccCCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----CC
Q psy5269 48 DLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGT----AI 123 (190)
Q Consensus 48 ~~~l~~~~~~~~~~~f~~~l~~~~~~~lg~~~~~~e~~~~~~lR~~il~~ac~~g~~~c~~~a~~~f~~~~~~~----~~ 123 (190)
..++.++.....|.+|+.+.-. ...-.+-..+-.+-.........+.|..+|+.|+... ..
T Consensus 14 ~~iL~d~~~~~~F~~FL~~~~~---------------~e~l~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~~~~ 78 (128)
T d1agre_ 14 ENLINHECGLAAFKAFLKSEYS---------------EENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVN 78 (128)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTC---------------THHHHHHHHHHHHHHCCCTTTHHHHHHHHHHHHTSTTCTTCCC
T ss_pred HHHHCChHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCCCcccC
Confidence 5667778888888888764321 1111222222223233455678899999999999743 33
Q ss_pred CCCCchHHHHH
Q psy5269 124 LPADLRSPVYR 134 (190)
Q Consensus 124 ip~d~r~~vy~ 134 (190)
+|+.+|..+-.
T Consensus 79 l~~~~r~~i~~ 89 (128)
T d1agre_ 79 LDSCTREETSR 89 (128)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666666653
Done!