RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5269
(190 letters)
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 85.6 bits (212), Expect = 6e-20
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 26 YTSWLTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANENH 85
+ L L F + + ++ ++ +Q KP W K +
Sbjct: 693 SPALLE---GLSYLESFYHMMDRR--NISDISENLKRYLLQYFKPVIDRQSWSDK--GSV 745
Query: 86 LNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVK--GTAILPADLRSPVYRAAIAGGSEA 143
+ +LRS ++ + A F ++ G +P D+ VY +
Sbjct: 746 WDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGAQTTAG- 804
Query: 144 TYQQLLKVIHN 154
+ LL+
Sbjct: 805 -WNYLLEQYEL 814
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 82.5 bits (204), Expect = 8e-19
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 53 NTEYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARA 112
E F F +++L+ W + + +LRS ++ V+ + A
Sbjct: 647 MNEVETQFKAFLIRLLRDLIDKQTWTDE--GSVSERMLRSQLLLLACVHNYQPCVQRAEG 704
Query: 113 KFEAHVKG--TAILPADLRSPVYRAAIAGGSEATYQQLLKVIHN 154
F + LP D+ V+ A+ S + L
Sbjct: 705 YFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQF 746
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 80.6 bits (199), Expect = 3e-18
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 17/130 (13%)
Query: 26 YTSWLTSGLAERGLRQFRRIPVDLLLSNTEYHHL---FYQFGVQILKPAGQSLGWEPKAN 82
L + L+ + + + F F +++L+ W +
Sbjct: 142 IMPVFQ---GLNELIPMYK-----LMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDE-- 191
Query: 83 ENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKG--TAILPADLRSPVYRAAIAGG 140
+ +LRS ++ V+ + A F + LP D+ V+ A+
Sbjct: 192 GSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQ 249
Query: 141 SEATYQQLLK 150
S + L
Sbjct: 250 STEGWDFLYS 259
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 63.1 bits (154), Expect = 3e-12
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 55 EYHHLFYQFGVQILKPAGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKF 114
+ F ++ K +EN L R +SRL V D F
Sbjct: 561 AFDDDARAFCRSRMQF------LTGKQDENLKIALGR---VSRLYVMVDESYAEEMSKLF 611
Query: 115 EAHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHN 154
+ ++RS + A + + LL+ +
Sbjct: 612 KDFDS----AEPEMRSSIATAYALVTGD--LKGLLEKFRS 645
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 56.6 bits (136), Expect = 4e-10
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 149 LKVIHNYGHGGYGVTTAPGTSRYAVQLVTRALD--PTSSL-KSKL 190
+VIHNYGHGGYG+T G + A +L R L+ S + S L
Sbjct: 303 TEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL 347
Score = 26.6 bits (58), Expect = 6.6
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 17/79 (21%)
Query: 107 LTLARAKFEAHVKGTAILPADLRSPVYRAAIAGG-----------------SEATYQQLL 149
L + + AD +P+ +A G S+ T+ LL
Sbjct: 17 LCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLL 76
Query: 150 KVIHNYGHGGYGVTTAPGT 168
+H+ G+ G
Sbjct: 77 SHVHSPNAENLGLFLISGY 95
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 53.1 bits (127), Expect = 7e-09
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 123 ILPADLRSPVYRAAIAGGSEATYQQLLKVIHNYGHGGYGVTTAPGTSRYAVQLVTRALD 181
I+ R+ + G + A ++ + ++H YG G + G + QLV A
Sbjct: 301 IVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDVAQLVDEAFQ 359
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.12
Identities = 18/124 (14%), Positives = 31/124 (25%), Gaps = 27/124 (21%)
Query: 7 VIKVIFIMLEKKP--FERLPKYTSWLTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQFG 64
+ +I + ++ + + E L L EY +F +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---------LEPAEYRKMFDRLS 379
Query: 65 -----VQILKPAGQSLG--W---EPKANENHLNTLL-RSLIISRL--GVYGDPDTLTLAR 111
I P L W +N L SL+ + P +
Sbjct: 380 VFPPSAHI--PT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 112 AKFE 115
K E
Sbjct: 437 VKLE 440
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.16
Identities = 42/215 (19%), Positives = 65/215 (30%), Gaps = 85/215 (39%)
Query: 17 KKPFERLPKYTSWLTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQ---FGV-----QIL 68
+K F+ + ++++ T FR LL S T+ F Q + + L
Sbjct: 1704 EKIFKEINEHSTSYT----------FRS-EKGLL-SATQ----FTQPALTLMEKAAFEDL 1747
Query: 69 K-----P-----AGQSLGWEPKANENHLNTLLRSLIISRL----GVYGDPDTLTL--ARA 112
K P AG SLG E + L V + + R
Sbjct: 1748 KSKGLIPADATFAGHSLG------EY-----------AALASLADVMSIESLVEVVFYRG 1790
Query: 113 KFEAHVKGTAILPAD--LRSPVYRAAI------AGGSEATYQQLLKVIH----------N 154
+P D RS AI A S+ Q +++ + N
Sbjct: 1791 MTMQVA-----VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 155 YGHGGYGVTTAPGTSRYAVQLVTRALDPTSSLKSK 189
Y A G R A+ VT L+ +K +
Sbjct: 1846 YNVENQQYVAA-GDLR-ALDTVTNVLN---FIKLQ 1875
Score = 31.6 bits (71), Expect = 0.17
Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 43/149 (28%)
Query: 19 PFERLPKYTSWLTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQFGVQILKPAGQSLGWE 78
P E + K+ +++S + + QF ++ L L +F L+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQV---LNL-------CLTEFENCYLE--------- 97
Query: 79 PKANENHLNTLLRSLIISRLGVYGDPDTLT----LARAKFEAHVKGTAILPADLRSPVYR 134
N+ H L L+ + TL L + A + S ++R
Sbjct: 98 --GNDIH--ALAAKLLQE------NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 135 AAIAGGSEATYQQLLKVIHNYGHGGYGVT 163
A G ++ GG G T
Sbjct: 148 AVGEGNAQ-LVAIF---------GGQGNT 166
Score = 28.5 bits (63), Expect = 1.8
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 107 LTLARAKFEAHVKGTAIL--PADLRSPVY 133
L A + + D++ PVY
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVY 460
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.91
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 90 LRSLIISRLGVYGDPDTL-TLA-RAKFE 115
L+ L + L +Y D+ LA +A E
Sbjct: 22 LKKLQ-ASLKLYA-DDSAPALAIKATME 47
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 28.7 bits (65), Expect = 1.1
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 156 GHGGYGVTTAPGTSRYAVQLVT 177
GGYG+ T+ + L+
Sbjct: 335 AQGGYGIQTSAAMGEASAALIR 356
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 28.4 bits (64), Expect = 1.6
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 123 ILPADLRSPVYRAAIAGG 140
I PADLR VYRA+ AGG
Sbjct: 234 INPADLRIDVYRASGAGG 251
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 28.3 bits (63), Expect = 1.6
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 151 VIHNYGHGGYGVTTAPGTSRYAVQLVTRA----LDPTSSLKS 188
+ + YG+ A++L R DP KS
Sbjct: 259 LDERFAGPEYGLPNEGTLE--AIRLCARTEGMLTDPVYEGKS 298
>3g7p_A Nitrogen fixation protein; DUF 269 family protein, structural
genomics, joint center FO structural genomics; HET: SO4
PG6; 2.00A {Acidithiobacillus ferrooxidans atcc
23ORGANISM_TAXID}
Length = 156
Score = 27.1 bits (60), Expect = 2.5
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 27/90 (30%)
Query: 77 WEPKANENHLNTLLRSLIISR-----LGVYGDPDTLTLARAKFEAHVKGTAILPADLRSP 131
WE K++ LL ++ + + + GDPD L R +
Sbjct: 35 WEKKSDM----ELLAPYVLDKEQRRAIPIIGDPDPEILWRVE------------------ 72
Query: 132 VYRAAIAGGSEATYQQLLKVIHNYGHGGYG 161
++ A+ +E ++ + H G+G
Sbjct: 73 LFYNAVGLATERASGVMVSPMMKMSHEGFG 102
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 27.6 bits (62), Expect = 2.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 123 ILPADLRSPVYRAAIAGG 140
+ P +LR V RA+ GG
Sbjct: 222 LKPEELRIDVMRASGPGG 239
>3giw_A Protein of unknown function DUF574; rossmann-fold protein,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces
avermitilis} PDB: 3go4_A*
Length = 277
Score = 27.2 bits (60), Expect = 3.1
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 103 DPDTLTLARAKFEAHVKG-TAILPADLRSP 131
DP LTL++ + +G TA + AD+ P
Sbjct: 114 DPIVLTLSQGLLASTPEGRTAYVEADMLDP 143
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Length = 274
Score = 27.2 bits (60), Expect = 3.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 100 VYGDPDTLTLARAKFE-AHVKGTAILPADLRSP 131
VY D D + L + A TA+ AD+R P
Sbjct: 108 VYVDIDPMVLTHGRALLAKDPNTAVFTADVRDP 140
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 26.8 bits (58), Expect = 4.1
Identities = 13/123 (10%), Positives = 31/123 (25%), Gaps = 2/123 (1%)
Query: 24 PKYTSWLTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQFGVQILKPAGQSLGWEPKANE 83
T ++ + + F ++ + + + K AG SL +
Sbjct: 37 KAVTGPVSEKVKDIV--AFTPFHLETKGEYGKQASEVFAVLINKDKAAGISLFDANSQFK 94
Query: 84 NHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRSPVYRAAIAGGSEA 143
+ + D + +A A A L+ P + + +
Sbjct: 95 KAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAALKEPAVQETLEKWKAS 154
Query: 144 TYQ 146
Sbjct: 155 YDV 157
>3nj2_A DUF269-containing protein; cyanobacteria, circadium rhythms,
nitrogen fixation, unknown; 1.59A {Cyanothece SP}
Length = 174
Score = 26.8 bits (59), Expect = 4.2
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 27/90 (30%)
Query: 77 WEPKANENHLNTLLRSLIISR-----LGVYGDPDTLTLARAKFEAHVKGTAILPADLRSP 131
+ +E ++ +I + + + GD D T R
Sbjct: 53 YRTWTDE----LVIAPYVIPKKKRREISLEGDIDPTTKLRIL------------------ 90
Query: 132 VYRAAIAGGSEATYQQLLKVIHNYGHGGYG 161
Y AIA E L +V+ + H G+G
Sbjct: 91 CYFRAIAALIEKETGLLCQVVVDLNHEGFG 120
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 26.8 bits (60), Expect = 4.2
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 151 VIHNYGHGGYGVTTAPGTSRYAVQLVT 177
++ GH G+ AP T L+
Sbjct: 334 ILFAAGHFRNGILLAPATGALISDLIM 360
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 26.4 bits (59), Expect = 6.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 123 ILPADLRSPVYRAAIAGG 140
I P DL+ +RA+ GG
Sbjct: 193 IRPEDLKIETFRASGHGG 210
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial;
GGQ domain, translation; NMR {Mus musculus}
Length = 115
Score = 25.4 bits (56), Expect = 7.5
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 123 ILPADLRSPVYRAAIAGG 140
+ ++L + GG
Sbjct: 43 LNESELEEQFVKGHGPGG 60
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 26.0 bits (58), Expect = 9.0
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 123 ILPADLRSPVYRAAIAGG 140
+ ++R V RA+ GG
Sbjct: 212 LNMDEIRIDVMRASGPGG 229
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 26.0 bits (58), Expect = 9.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 123 ILPADLRSPVYRAAIAGG 140
+ PADLR +R++ AGG
Sbjct: 217 VNPADLRIDTFRSSGAGG 234
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 26.0 bits (58), Expect = 9.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 123 ILPADLRSPVYRAAIAGG 140
I P DLR +Y A+ AGG
Sbjct: 230 IDPKDLRVDIYHASGAGG 247
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,991,830
Number of extensions: 176343
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 35
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)