RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5269
         (190 letters)



>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
           domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 246

 Score = 51.8 bits (123), Expect = 6e-09
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 116 AHVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHNYGHGGYGVTTAPGTSRYAVQL 175
             V    + P  L+  + R  +  GS        +VIHNYGHGGYG+T   G +    +L
Sbjct: 182 TGVWAGVLQPDPLQVRLEREQLRFGSSN-----TEVIHNYGHGGYGLTIHWGCALEVAKL 236

Query: 176 VTRALD 181
             + L+
Sbjct: 237 FGKVLE 242


>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
           N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
          Length = 268

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 117 HVKGTAILPADLRSPVYRAAIAGGSEATYQQLLKVIHNYGHGGYGVTTAPGTSRYAVQLV 176
            V+   I+    R+    +   G + A  ++ + ++H YG    G   + G +    QLV
Sbjct: 200 RVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDVAQLV 259

Query: 177 TRALD 181
             A  
Sbjct: 260 DEAFQ 264


>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
           [TaxId: 562]}
          Length = 213

 Score = 27.4 bits (61), Expect = 0.94
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 73  QSLGWEPKANENHLNTLLRSLII----SRLGVYGDPD 105
           Q L  +   + + L+  L S+I     S L V+G  +
Sbjct: 23  QQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSE 59


>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus
           sp. [TaxId: 1409]}
          Length = 276

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 151 VIHNYGHGGYGVTTAPGTSRYAVQLVTRA 179
           ++   GH   G+  AP T      L+   
Sbjct: 233 ILFAAGHFRNGILLAPATGALISDLIMNK 261


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 363

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 7   VIKVIFIMLEKK------PFERLPKYTSWLTSGLAERGLRQFRRIPVDLLLSNTEYH--H 58
           V++ +F  ++ K      P   +PK  +    GL    + +   I  +      E    +
Sbjct: 277 VLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGHINMMELFSISKEFWDKEVEDIEKY 336

Query: 59  LFYQFG 64
           L  Q  
Sbjct: 337 LVDQVN 342


>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 277

 Score = 25.9 bits (56), Expect = 2.9
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 7   VIKVIFIMLEKKPFERLPKYTSWLTSGLAERGLRQFRRIPVDLLLSNTEYHHLFYQ 62
            + + F   E K FE++ +  + L S    RGL     I      S   Y  L   
Sbjct: 224 TLMMFFKSCEPKTFEKMAQLNNKLES----RGLVGVECI---TPYS---YKSLAMA 269


>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos
           (Oryza sativa) [TaxId: 4530]}
          Length = 111

 Score = 24.3 bits (52), Expect = 6.6
 Identities = 12/67 (17%), Positives = 23/67 (34%)

Query: 71  AGQSLGWEPKANENHLNTLLRSLIISRLGVYGDPDTLTLARAKFEAHVKGTAILPADLRS 130
            G +L                S     + V  + +TL       + ++ GT ++   L+ 
Sbjct: 36  QGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKK 95

Query: 131 PVYRAAI 137
           P  RA +
Sbjct: 96  PQERADL 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 705,637
Number of extensions: 31216
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 8
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)