BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5270
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|6 Chain 6, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|6 Chain 6, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|G Chain G, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 181
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 280 MLEPRWVISMGSCANXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
M +P+WVISMG+CA+ D ++PVD+YVPGCPP EAL+Y ++QLQKK
Sbjct: 99 MPDPKWVISMGACASSGGMFNNYAIVQNV-DSVVPVDVYVPGCPPRPEALIYAVMQLQKK 157
Query: 340 VK 341
V+
Sbjct: 158 VR 159
>pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid
Dehydrogenase Type Xi
pdb|1YB1|B Chain B, Crystal Structure Of Human 17-Beta-Hydroxysteroid
Dehydrogenase Type Xi
Length = 272
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXXXXXXXNSKI 185
+ FLP M + N GHIV ++S AG V +P L+ YC+SKFA + +
Sbjct: 148 KAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQI-TGV 206
Query: 186 KFTSIFPFMVDTGLCKNPKIKM 207
K T + P V+TG KNP +
Sbjct: 207 KTTCLCPNFVNTGFIKNPSTSL 228
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 4 ITRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIEXX-XXXXXXXXKLRILNLGMNRLS 61
+T + L+ N+L+ +P G+ + L NL+ L L NQ++ L LNL N+L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNL 118
SLP+G F L LDL+YN L QSLP G F L L+ L L N + +P + L
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQL--QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Query: 119 KNLQII 124
+LQ I
Sbjct: 205 TSLQYI 210
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXXXXXX-XXXXKLRILNLGMNRLSS 62
TR+ L NKL+ +P G+ L L L+L NQI+ KL IL L N+L S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 110
LP G F L+ L L N L +S+P G F L +L+ ++L N ++
Sbjct: 91 LPNGVFDKLTQLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPWDC 138
>pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
C-Terminal Deletion Mutant Complexed With Estradiol And
Nadp+
Length = 289
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+L+ FLPDM + G ++ S+ G++GLP YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162
>pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221q Complexed With Estradiol
Length = 327
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+L+ FLPDM + G ++ S+ G++GLP YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 9 LSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXXX-XXXXXXXKLRILNLGMNRLSSLPRG 66
++ NKL+ +P G+ LVNL L L NQ++ KL L+LG N L SLP+G
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 67 -FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112
F L+ L L YNN ++ G F L L+ L L +N + +P
Sbjct: 152 VFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 229 TTILDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPAEI-GNLKNLQIMLEPRWV 286
T LDL N L+ SLP F L LR LYL DN + LPA I LKNL+ + WV
Sbjct: 39 TKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL----WV 92
Query: 287 IS 288
Sbjct: 93 TD 94
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 1 MLYITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXX-XXXXXXXXKLRILNLGMN 58
+ +T ++L +N+L+ +P G+ L +L+ L L+NNQ++ +L+ L L N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 59 RLSSLPRG-FGAFPVLEVLDLTYN 81
+L +P G F + L++L L N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 53 LNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVL 111
++ +L+++P A + LDL N L+ SLP F L LR LYL DN + L
Sbjct: 21 VDCSSKKLTAIPSNIPADT--KKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 112 PAEI-GNLKNLQIILET 127
PA I LKNL+ + T
Sbjct: 77 PAGIFKELKNLETLWVT 93
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXX-XXXXXXXXKLRILNLGMNRLSSLPR 65
+ S KL IP + + + L L +N++ KLR+L L N+L +LP
Sbjct: 21 VDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 66 G-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI 115
G F LE L +T N L Q+LP G F L L L L N + LP +
Sbjct: 79 GIFKELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 205 IKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE-QSLPGNFFM-LETLRALYLGDN 262
++ N+LSSLP +AF T L L Y N N+ Q+LP F L+ L L++ DN
Sbjct: 44 LQSNKLSSLPS--------KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
Query: 263 DFEVLP 268
+ LP
Sbjct: 96 KLQALP 101
>pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed
17-beta- Estradiol
Length = 327
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+L+ FLPDM + G ++ S+ G++GLP YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162
>pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
Complexed With 17- Beta-Estradiol
pdb|1FDT|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
Complexed With Estradiol And Nadp+
pdb|3KLM|X Chain X, 17beta-Hsd1 In Complex With Dht
Length = 327
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+L+ FLPDM + G ++ S+ G++GLP YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162
>pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDV|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
Length = 327
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+L+ FLPDM + G ++ S+ G++GLP YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162
>pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
pdb|1EQU|B Chain B, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
pdb|1DHT|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dihydrotestosterone
pdb|3DHE|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dehydroepiandrosterone
pdb|1I5R|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Em1745 Complex
pdb|1JTV|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase
Type 1 Complexed With Testosterone
pdb|1QYV|A Chain A, Crystal Structure Of Human Estrogenic
17beta-hydroxysteroid Dehydrogenase Complex With Nadp
pdb|1QYW|A Chain A, Crystal Structure Of Human Estrogenic
17beta-hydroxysteroid Dehydrogenase Comlex With
Androstanedione And Nadp
pdb|1QYX|A Chain A, Crystal Structure Of Human Estrogenic
17beta-Hydroxysteroid Dehydrogenase Complex With
Androstenedione And Nadp
pdb|1BHS|A Chain A, Human Estrogenic 17beta-hydroxysteroid Dehydrogenase
pdb|3DEY|X Chain X, Crystal Structure Of 17beta-Hsd1 With Dht In Normal And
Reverse Orientation.
pdb|3HB4|X Chain X, 17beta-Hydroxysteroid Dehydrogenase Type1 Complexed With
E2b
pdb|3HB5|X Chain X, Binary And Ternary Crystal Structures Of A Novel Inhibitor
Of 17 Beta-Hsd Type 1: A Lead Compound For Breast Cancer
Therapy
pdb|3KLP|X Chain X, 17beta-Hsd1 In Complex With A-Diol
pdb|3KM0|A Chain A, 17betahsd1 In Complex With 3beta-Diol
pdb|3KM0|B Chain B, 17betahsd1 In Complex With 3beta-Diol
Length = 327
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+L+ FLPDM + G ++ S+ G++GLP YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
L L L N L+ LP L VLDL++N L SLP L+ Y DN
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVT 306
Query: 110 VLPAEIGNLKNLQII 124
LP E GNL NLQ +
Sbjct: 307 TLPWEFGNLCNLQFL 321
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSS 62
++TR+ L+ N L E+P + NL NL +L L +N++ +L+ N +++
Sbjct: 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT 307
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL-----YLGDNDFEV-LPAE 114
LP FG L+ L + N L +Q F + T +++ YL DN E+ LP E
Sbjct: 308 LPWEFGNLCNLQFLGVEGNPLEKQ-----FLKILTEKSVTGLIFYLRDNRPEIPLPHE 360
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 231 ILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM 280
+LDL++N L SLP L+ Y DN LP E GNL NLQ +
Sbjct: 274 VLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 72 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
+ LDL+ NL ++ N F + L LYL N LPAEI NL NL+++
Sbjct: 225 LWHALDLS--NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVL 275
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM 280
LDL+ NL ++ N F + L LYL N LPAEI NL NL+++
Sbjct: 229 LDLS--NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVL 275
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 226 FSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+ F T L L N+L E LP L LR L L N LPAE+G+ L+
Sbjct: 246 YDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
>pdb|1HDC|A Chain A, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid
Dehydrogenase By A Licorice-Derived Steroidal Inhibitor
pdb|1HDC|B Chain B, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid
Dehydrogenase By A Licorice-Derived Steroidal Inhibitor
pdb|1HDC|C Chain C, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid
Dehydrogenase By A Licorice-Derived Steroidal Inhibitor
pdb|1HDC|D Chain D, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid
Dehydrogenase By A Licorice-Derived Steroidal Inhibitor
Length = 254
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL + I ++T +P M + G IV ISS AG++GL Y ASK+ V
Sbjct: 110 NLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGV----RGLSKLA 165
Query: 177 XXXXXNSKIKFTSIFPFM------VDTGLCKN----PKIKMNRLSSLP 214
+I+ S+ P M +TG+ + P M R+ + P
Sbjct: 166 AVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEP 213
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 4 ITRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIEXXXXXX-XXXXKLRILNLGMNRLS 61
+T++ L NKL+ +P G+ N L +L L L NQ++ +L+ L L N+L
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 110
SLP G F L+ L L N L +S+P G F L +L+ ++L DN ++
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQL--KSVPDGVFDRLTSLQYIWLHDNPWDC 162
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 4 ITRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIEXXXXXX-XXXXKLRILNLGMNRLS 61
T + L N LK +P G+ + L +L L L N+++ L LNL N+L
Sbjct: 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNL 118
SLP G F L+ L L N L QSLP G F L L+ L L N + +P + L
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQL--QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 119 KNLQII 124
+LQ I
Sbjct: 148 TSLQYI 153
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 229 TTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGN 273
TT LDL N+L +SLP G F L +L LYLG N + LP + N
Sbjct: 30 TTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 61 SSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGN 117
+S+P G A LDL N+L +SLP G F L +L LYLG N + LP + N
Sbjct: 20 TSVPTGIPA--QTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 4 ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSS 62
+ R + +L IP L ++ NL L L N E L + G N+L
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQ 184
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 110
+PRG FG P L+ L+L N L +S+P G F L +L+ ++L N ++
Sbjct: 185 MPRGIFGKMPKLKQLNLASNQL--KSVPDGIFDRLTSLQKIWLHTNPWDC 232
>pdb|2HSD|A Chain A, The Refined Three-Dimensional Structure Of 3alpha,20beta-
Hydroxysteroid Dehydrogenase And Possible Roles Of The
Residues Conserved In Short-Chain Dehydrogenases
pdb|2HSD|B Chain B, The Refined Three-Dimensional Structure Of 3alpha,20beta-
Hydroxysteroid Dehydrogenase And Possible Roles Of The
Residues Conserved In Short-Chain Dehydrogenases
pdb|2HSD|C Chain C, The Refined Three-Dimensional Structure Of 3alpha,20beta-
Hydroxysteroid Dehydrogenase And Possible Roles Of The
Residues Conserved In Short-Chain Dehydrogenases
pdb|2HSD|D Chain D, The Refined Three-Dimensional Structure Of 3alpha,20beta-
Hydroxysteroid Dehydrogenase And Possible Roles Of The
Residues Conserved In Short-Chain Dehydrogenases
Length = 253
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL + I ++T +P M + G IV ISS AG++GL Y ASK+ V
Sbjct: 110 NLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGV----RGLSKLA 165
Query: 177 XXXXXNSKIKFTSIFPFMVDTGLCKNPKIKMN 208
+I+ S+ P M T + I+
Sbjct: 166 AVELGTDRIRVNSVHPGMTYTPMTAETGIRQG 197
>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|B Chain B, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|C Chain C, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|D Chain D, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
Length = 287
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
N+ L I + LP KN G IV + S+AG P YCASKFAV
Sbjct: 147 NVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAV----GAFTDSL 202
Query: 177 XXXXXNSKIKFTSIFPFMVDT 197
N+KI+ I P +V+T
Sbjct: 203 RKELINTKIRVILIAPGLVET 223
>pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
pdb|3RKR|B Chain B, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
pdb|3RKR|C Chain C, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
pdb|3RKR|D Chain D, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
Length = 262
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKF 163
NLK ++L F P M+ RGHI+ ISS+AG + + Y ASK+
Sbjct: 138 NLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKW 184
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 9 LSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXX-XXXXXXXXKLRILNLGMNRLSSLPRG 66
L++N+L +P G+ +L L+ L L NQ++ KL+ L L N+L S+P G
Sbjct: 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149
Query: 67 -FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI 115
F L+ L L+ N L QS+P G F L L+ + L N F+ EI
Sbjct: 150 AFDKLTNLQTLSLSTNQL--QSVPHGAFDRLGKLQTITLFGNQFDCSRCEI 198
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 49 KLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
KL LNL N+L +L G F L L L N L SLP G F L L LYLG N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGN 117
Query: 107 DFEVLPAEI 115
+ LP+ +
Sbjct: 118 QLKSLPSGV 126
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 15 KEIPPGLANLVNLEILTLFNNQI-EXXXXXXXXXXKLRILNLGMNRLSSLPRGFGAF--- 70
K++PP + L+L N I E +LR+L L NR+ SL F F
Sbjct: 48 KDLPP------RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL--DFHVFLFN 99
Query: 71 PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA--EIGNLKNLQII 124
LE LD+++N L S + +LR L L NDF+VLP E GNL L +
Sbjct: 100 QDLEYLDVSHNRLQNISCCP----MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 49 KLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDND 107
K+++L+L NR+ S+P+ L+ L++ N L +S+P G F L +L+ ++L DN
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL--KSVPDGVFDRLTSLQYIWLHDNP 508
Query: 108 FE 109
++
Sbjct: 509 WD 510
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 204 KIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDND 263
++ NR+ SL F F + + LD+++N L S + +LR L L ND
Sbjct: 82 RLSHNRIRSL--DFHVFLFNQDLEY---LDVSHNRLQNISCCP----MASLRHLDLSFND 132
Query: 264 FEVLPA--EIGNLKNLQIM 280
F+VLP E GNL L +
Sbjct: 133 FDVLPVCKEFGNLTKLTFL 151
>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
pdb|3F9I|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
Length = 249
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 100 ALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159
A+ + D DF+ + +I NLK I+ + M++K G I+ ISS+ GI G P YC
Sbjct: 100 AIRMKDQDFDKVI-DI-NLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYC 157
Query: 160 ASK 162
ASK
Sbjct: 158 ASK 160
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQI-EXXXXXXXXXXKLRILNLGMNRLSSL 63
T + L +P G+ ++L L+ NQI + +L LNL +N+L++L
Sbjct: 22 TTVNCQERSLASVPAGIPTTT--QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTAL 79
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
P G F L L L N L +S+P G F L++L +YL +N ++ ++I LKN
Sbjct: 80 PVGVFDKLTKLTHLALHINQL--KSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKN 136
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE 38
+L +T + LSHN+L+ +PP LA L LE+L +N +E
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE 38
+L +T + LSHN+L+ +PP LA L LE+L +N +E
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 9 LSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXX-XXXXXXXXKLRILNLGMNRLSSLPRG 66
L++N+L +P G+ +L L+ L L NQ++ KL+ L L N+L S+P G
Sbjct: 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149
Query: 67 -FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI 115
F L+ L L+ N L QS+P G F L L+ + L N F+ E
Sbjct: 150 AFDKLTNLQTLSLSTNQL--QSVPHGAFDRLGKLQTITLFGNQFDCSRCET 198
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 49 KLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
KL LNL N+L +L G F L L L N L SLP G F L L LYLG N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGN 117
Query: 107 DFEVLPAEI 115
+ LP+ +
Sbjct: 118 QLKSLPSGV 126
>pdb|3P19|A Chain A, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|B Chain B, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|C Chain C, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|D Chain D, Improved Nadph-Dependent Blue Fluorescent Protein
Length = 266
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXXXXXXXNSK 184
++ L M +N G I+ ISS+AG P+ YC +KFAV S
Sbjct: 126 MQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAA----SN 181
Query: 185 IKFTSIFPFMVDTGL 199
++ +I P V T L
Sbjct: 182 VRVMTIAPSAVKTEL 196
>pdb|3GMD|A Chain A, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|B Chain B, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|C Chain C, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|D Chain D, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|E Chain E, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|F Chain F, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|G Chain G, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
pdb|3GMD|H Chain H, Structure-Based Design Of 7-Azaindole-Pyrrolidines As
Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I
Length = 264
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+++ T M++++ G I ISS+AG V P + PY ASKFA+
Sbjct: 123 VVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFAL 165
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 136
Query: 109 EVLP 112
+ LP
Sbjct: 137 KTLP 140
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 135
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +N LPA + N L+NL +L
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 136
Query: 109 EVLP 112
+ LP
Sbjct: 137 KTLP 140
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 135
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +N LPA + N L+NL +L
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|C Chain C, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|D Chain D, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
Length = 266
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 105 DNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
D D++ + A NL + + MM + G I+ I+S+ G+VG P YCA+K
Sbjct: 122 DQDWDDVLAV--NLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAK 177
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 136
Query: 109 EVLP 112
+ LP
Sbjct: 137 KTLP 140
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 135
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +N LPA + N L+NL +L
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 136
Query: 109 EVLP 112
+ LP
Sbjct: 137 KTLP 140
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 135
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +N LPA + N L+NL +L
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 136
Query: 109 EVLP 112
+ LP
Sbjct: 137 KTLP 140
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 135
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +N+ LPA + N L+NL +L
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 136
Query: 109 EVLP 112
+ LP
Sbjct: 137 KTLP 140
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 135
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +N+ LPA + N L+NL +L
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 137
Query: 109 EVLP 112
+ LP
Sbjct: 138 KTLP 141
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 136
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +N+ LPA + N L+NL +L
Sbjct: 137 LKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 179
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 136
Query: 109 EVLP 112
+ LP
Sbjct: 137 KTLP 140
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 135
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +N+ LPA + N L+NL +L
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 136
Query: 109 EVLP 112
+ LP
Sbjct: 137 KTLP 140
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 135
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +ND LPA + N L+NL +L
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLL 178
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 108
L L+L N+L SLP P L VLD+++N L SLP G L L+ LYL N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNEL 136
Query: 109 EVLP 112
+ LP
Sbjct: 137 KTLP 140
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 27 LEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP----RGFGAFPVLEVLDLTYNN 82
L L L +NQ++ L +L++ NRL+SLP RG G L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNE 135
Query: 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQIIL 125
L PG L L L +N+ LPA + N L+NL +L
Sbjct: 136 LKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
>pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|B Chain B, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|C Chain C, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|D Chain D, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|E Chain E, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|F Chain F, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|G Chain G, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|H Chain H, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
Length = 262
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 57 MNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG 116
+ + S+ R FG +D +NN Q G F ++ Y D+ VL
Sbjct: 72 IGTVDSVVRDFGK------IDFLFNNAGYQ---GAFAPVQD----YPSDDFARVLTI--- 115
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
N+ +L+ M+ +N G IV +SMAG+ G PN+ Y SK A+
Sbjct: 116 NVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAI 164
>pdb|1Y5M|A Chain A, The Crystal Structure Of Murine 11b-Hydroxysteroid
Dehydrogenase: An Important Therapeutic Target For
Diabetes
pdb|1Y5M|B Chain B, The Crystal Structure Of Murine 11b-Hydroxysteroid
Dehydrogenase: An Important Therapeutic Target For
Diabetes
pdb|1Y5R|A Chain A, The Crystal Structure Of Murine 11b-hydroxysteroid
Dehydrogenase Complexed With Corticosterone
pdb|1Y5R|B Chain B, The Crystal Structure Of Murine 11b-hydroxysteroid
Dehydrogenase Complexed With Corticosterone
Length = 276
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+++ T M++++ G I ISS+AG + P + PY ASKFA+
Sbjct: 132 VVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFAL 174
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Query: 5 TRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIEXXXXXXXX---XXKLRILNLGMNRL 60
TR+ L NKL+ +P G+ + L L L+L +N + L+ L+L N +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 61 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LK 119
++ F LE LD ++NL + S F L L L + V I N L
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 120 NLQII-------LETFLPDMMEKNR 137
+L+++ E FLPD+ + R
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELR 175
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 1 MLYITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXX-XXXXXXXXKLRILNLGMN 58
++ + + L N+L +P G+ +L L +L L NQ+ L+ L + N
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 59 RLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGN 117
+L+ LPRG L L L N L +S+P G F L +L YL N ++ +I
Sbjct: 123 KLTELPRGIERLTHLTHLALDQNQL--KSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMY 180
Query: 118 LKN 120
L+N
Sbjct: 181 LRN 183
>pdb|3TFO|A Chain A, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|B Chain B, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|C Chain C, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|D Chain D, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
Length = 264
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
N+K + + LP M + G I+ I S+ + +P YCA+KFAV
Sbjct: 112 NIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAV------RAISD 165
Query: 177 XXXXXNSKIKFTSIFPFMVDTGLC 200
++ I+ T + P +V++ L
Sbjct: 166 GLRQESTNIRVTCVNPGVVESELA 189
>pdb|3PDJ|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase 1 (11b-Hsd1) In Complex With
4,4-Disubstituted Cyclohexylbenzamide Inhibitor
pdb|3PDJ|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase 1 (11b-Hsd1) In Complex With
4,4-Disubstituted Cyclohexylbenzamide Inhibitor
Length = 273
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 138 MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFAL 171
>pdb|3D5Q|A Chain A, Crystal Structure Of 11b-Hsd1 In Complex With Triazole
Inhibitor
pdb|3D5Q|B Chain B, Crystal Structure Of 11b-Hsd1 In Complex With Triazole
Inhibitor
pdb|3D5Q|C Chain C, Crystal Structure Of 11b-Hsd1 In Complex With Triazole
Inhibitor
pdb|3D5Q|D Chain D, Crystal Structure Of 11b-Hsd1 In Complex With Triazole
Inhibitor
Length = 272
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 137 MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFAL 170
>pdb|1XU7|A Chain A, Crystal Structure Of The Interface Open Conformation Of
Tetrameric 11b-hsd1
pdb|1XU7|B Chain B, Crystal Structure Of The Interface Open Conformation Of
Tetrameric 11b-hsd1
pdb|1XU7|C Chain C, Crystal Structure Of The Interface Open Conformation Of
Tetrameric 11b-hsd1
pdb|1XU7|D Chain D, Crystal Structure Of The Interface Open Conformation Of
Tetrameric 11b-hsd1
pdb|1XU9|A Chain A, Crystal Structure Of The Interface Closed Conformation Of
11b-Hydroxysteroid Dehydrogenase Isozyme 1
pdb|1XU9|B Chain B, Crystal Structure Of The Interface Closed Conformation Of
11b-Hydroxysteroid Dehydrogenase Isozyme 1
pdb|1XU9|C Chain C, Crystal Structure Of The Interface Closed Conformation Of
11b-Hydroxysteroid Dehydrogenase Isozyme 1
pdb|1XU9|D Chain D, Crystal Structure Of The Interface Closed Conformation Of
11b-Hydroxysteroid Dehydrogenase Isozyme 1
pdb|3BZU|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase(Hsd1) In Complex With Nadp And Thiazolone
Inhibitor
pdb|3BZU|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase(Hsd1) In Complex With Nadp And Thiazolone
Inhibitor
pdb|3BZU|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase(Hsd1) In Complex With Nadp And Thiazolone
Inhibitor
pdb|3BZU|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase(Hsd1) In Complex With Nadp And Thiazolone
Inhibitor
pdb|3CZR|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With
Arylsulfonylpiperazine Inhibitor
pdb|3CZR|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With
Arylsulfonylpiperazine Inhibitor
pdb|3D3E|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Benzamide Inhibitor
pdb|3D3E|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Benzamide Inhibitor
pdb|3D3E|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Benzamide Inhibitor
pdb|3D3E|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Benzamide Inhibitor
pdb|3D4N|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Sulfonamide
Inhibitor
pdb|3D4N|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Sulfonamide
Inhibitor
pdb|3D4N|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Sulfonamide
Inhibitor
pdb|3D4N|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Sulfonamide
Inhibitor
pdb|3FRJ|A Chain A, Crystal Structure Of 11b-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Piperidyl Benzamide Inhibitor
pdb|3FRJ|B Chain B, Crystal Structure Of 11b-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Piperidyl Benzamide Inhibitor
pdb|3HFG|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An Sulfonyl-Piperazine Inhibitor
pdb|3HFG|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An Sulfonyl-Piperazine Inhibitor
pdb|3HFG|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An Sulfonyl-Piperazine Inhibitor
pdb|3HFG|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An Sulfonyl-Piperazine Inhibitor
pdb|3FCO|A Chain A, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Benzamide Inhibitor
pdb|3FCO|B Chain B, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Benzamide Inhibitor
pdb|3H6K|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An
Ortho-Chlro-Sulfonyl-Piperazine Inhibitor
pdb|3H6K|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An
Ortho-Chlro-Sulfonyl-Piperazine Inhibitor
pdb|3H6K|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An
Ortho-Chlro-Sulfonyl-Piperazine Inhibitor
pdb|3H6K|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An
Ortho-Chlro-Sulfonyl-Piperazine Inhibitor
pdb|3OQ1|A Chain A, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Diarylsulfone Inhibitor
pdb|3OQ1|B Chain B, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Diarylsulfone Inhibitor
pdb|3OQ1|C Chain C, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Diarylsulfone Inhibitor
pdb|3OQ1|D Chain D, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Diarylsulfone Inhibitor
pdb|3QQP|A Chain A, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Urea Inhibitor
pdb|3QQP|B Chain B, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Urea Inhibitor
pdb|3QQP|C Chain C, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Urea Inhibitor
pdb|3QQP|D Chain D, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Urea Inhibitor
Length = 286
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 151 MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFAL 184
>pdb|2RBE|A Chain A, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1
Inhibitors
pdb|2RBE|B Chain B, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1
Inhibitors
pdb|2RBE|C Chain C, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1
Inhibitors
pdb|2RBE|D Chain D, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1
Inhibitors
pdb|3BYZ|A Chain A, 2-Amino-1,3-Thiazol-4(5h)-Ones As Potent And Selective 11-
Hydroxysteroid Dehydrogenase Type 1 Inhibitors
pdb|3BYZ|B Chain B, 2-Amino-1,3-Thiazol-4(5h)-Ones As Potent And Selective 11-
Hydroxysteroid Dehydrogenase Type 1 Inhibitors
pdb|3BYZ|C Chain C, 2-Amino-1,3-Thiazol-4(5h)-Ones As Potent And Selective 11-
Hydroxysteroid Dehydrogenase Type 1 Inhibitors
pdb|3BYZ|D Chain D, 2-Amino-1,3-Thiazol-4(5h)-Ones As Potent And Selective 11-
Hydroxysteroid Dehydrogenase Type 1 Inhibitors
pdb|3EY4|A Chain A, Further Studies With The 2-Amino-1,3-Thiazol-4(5h)-One
Class Of 11-Hydroxysteroid Dehydrogenase Type 1
(11-Hsd1) Inhibitors: Reducing Pregnane X Receptor (Pxr)
Activity And Exploring Activity In A Monkey
Pharmacodynamic Model
pdb|3EY4|B Chain B, Further Studies With The 2-Amino-1,3-Thiazol-4(5h)-One
Class Of 11-Hydroxysteroid Dehydrogenase Type 1
(11-Hsd1) Inhibitors: Reducing Pregnane X Receptor (Pxr)
Activity And Exploring Activity In A Monkey
Pharmacodynamic Model
pdb|3EY4|C Chain C, Further Studies With The 2-Amino-1,3-Thiazol-4(5h)-One
Class Of 11-Hydroxysteroid Dehydrogenase Type 1
(11-Hsd1) Inhibitors: Reducing Pregnane X Receptor (Pxr)
Activity And Exploring Activity In A Monkey
Pharmacodynamic Model
pdb|3EY4|D Chain D, Further Studies With The 2-Amino-1,3-Thiazol-4(5h)-One
Class Of 11-Hydroxysteroid Dehydrogenase Type 1
(11-Hsd1) Inhibitors: Reducing Pregnane X Receptor (Pxr)
Activity And Exploring Activity In A Monkey
Pharmacodynamic Model
Length = 275
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 140 MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFAL 173
>pdb|2IRW|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|B Chain B, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|C Chain C, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|D Chain D, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|E Chain E, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|F Chain F, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|G Chain G, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|H Chain H, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
Length = 264
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 132 MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFAL 165
>pdb|2AG5|A Chain A, Crystal Structure Of Human Dhrs6
pdb|2AG5|B Chain B, Crystal Structure Of Human Dhrs6
pdb|2AG5|C Chain C, Crystal Structure Of Human Dhrs6
pdb|2AG5|D Chain D, Crystal Structure Of Human Dhrs6
Length = 246
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV-GLPNLVPYCASKFAV 165
N++++ ++++ FLP M+ + G+I+ +SS+A V G+ N Y +K AV
Sbjct: 105 NVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAV 154
>pdb|2ILT|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Sulfone Inhibitor
Length = 275
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 164
M++++ G IV +SS+AG V P + Y ASKFA
Sbjct: 147 MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFA 179
>pdb|1NFF|A Chain A, Crystal Structure Of Rv2002 Gene Product From
Mycobacterium Tuberculosis
pdb|1NFF|B Chain B, Crystal Structure Of Rv2002 Gene Product From
Mycobacterium Tuberculosis
pdb|1NFQ|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFQ|B Chain B, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFQ|C Chain C, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFQ|D Chain D, Rv2002 Gene Product From Mycobacterium Tuberculosis
Length = 260
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL + + + + M E RG I+ ISS+ G+ G Y A+KFAV
Sbjct: 112 NLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALEL 171
Query: 177 XXXXXNSKIKFTSIFPFMVDT 197
S I+ SI P +V T
Sbjct: 172 GP----SGIRVNSIHPGLVKT 188
>pdb|4BB6|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
pdb|4BB6|B Chain B, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
Length = 292
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 157 MLKQSNGSIVVVSSLAGKVAYPLVAAYSASKFAL 190
>pdb|2BEL|A Chain A, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In
Complex With Nadp And Carbenoxolone
pdb|2BEL|B Chain B, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In
Complex With Nadp And Carbenoxolone
pdb|2BEL|C Chain C, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In
Complex With Nadp And Carbenoxolone
pdb|2BEL|D Chain D, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In
Complex With Nadp And Carbenoxolone
Length = 283
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 154 MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFAL 187
>pdb|3CH6|A Chain A, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3CH6|B Chain B, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3CH6|D Chain D, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3CH6|E Chain E, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3TFQ|A Chain A, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
pdb|3TFQ|B Chain B, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
pdb|3TFQ|D Chain D, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
pdb|3TFQ|E Chain E, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
Length = 286
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 151 MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFAL 184
>pdb|4BB5|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
pdb|4BB5|B Chain B, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
pdb|4BB5|C Chain C, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
pdb|4BB5|D Chain D, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
Length = 292
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 157 MLKQSNGSIVVVSSLAGKVAYPLVAAYSASKFAL 190
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLP 64
T + S+ LK +P G+ ++ L L NQ L +++L NR+S+L
Sbjct: 13 TVVRCSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS 70
Query: 65 -RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112
+ F L L L+YN L P F L++LR L L ND V+P
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHGNDISVVP 118
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXX-XXXXKLRILNLGMNRLSS 62
+T + L N+ +P L+N +L ++ L NN+I +L L L NRL
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 63 L-PRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
+ PR F L +L L N+++ +P G F L L L +G N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDIS--VVPEGAFNDLSALSHLAIGAN 136
>pdb|4HFR|A Chain A, Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In
Complex With An Orally Bioavailable Acidic Inhibitor
Azd4017.
pdb|4HFR|B Chain B, Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In
Complex With An Orally Bioavailable Acidic Inhibitor
Azd4017
Length = 272
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M++++ G IV +SS+AG V P + Y ASKFA+
Sbjct: 137 MLKQSNGSIVVVSSLAGKVAYPLVAAYSASKFAL 170
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 50 LRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDND 107
L IL L N+ L G F LEVL LT NL+ L GNFF L +L L L DN+
Sbjct: 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140
Query: 108 F-EVLPAEIG-NLKNLQIILETF 128
++ PA N++ ++ TF
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTF 163
>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|B Chain B, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|C Chain C, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|D Chain D, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
Length = 246
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
MM + G I+ I+S+ G+ G P YCASK
Sbjct: 127 MMRRRNGRIINITSIVGVTGNPGQANYCASK 157
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 50 LRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDND 107
L IL L N+ L G F LEVL LT NL+ L GNFF L +L L L DN+
Sbjct: 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140
Query: 108 F-EVLPAEIG-NLKNLQIILETF 128
++ PA N++ ++ TF
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTF 163
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 21 LANLVNLEILTLFNNQI-EXXXXXXXXXXKLRILNLGMNRLSSL-PRGFGAFPVLEVLDL 78
++ +LE LTL N+I + L LNL N L S+ R F LEVLDL
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 79 TYNN---LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQII 124
+YN+ L +QS F L L+ L L N + +P I L +LQ I
Sbjct: 355 SYNHIRALGDQS----FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400
>pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
pdb|3G49|B Chain B, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
pdb|3G49|C Chain C, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
pdb|3G49|D Chain D, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
Length = 277
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 106 NDFEVLPAEIGNL-KNLQIILETFLP------DMMEKNRGHIVGISSMAGIVGLPNLVPY 158
N EI N+ K++++ +F+ M+ +++G I +SS+AG + P + PY
Sbjct: 101 NRLTFFHGEIDNVRKSMEVNFHSFVVLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPY 160
Query: 159 CASKFAV 165
ASKFA+
Sbjct: 161 SASKFAL 167
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLPRG 66
I +++N++ +I P LANL NL LTLFNNQI L L L N +S +
Sbjct: 90 ILMNNNQIADITP-LANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDI-SA 146
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
L+ L+ + N + + N LE L +D VL A++ NL++L
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL-AKLTNLESL 200
>pdb|3LZ6|A Chain A, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With
Pf-877423
pdb|3LZ6|B Chain B, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With
Pf-877423
pdb|3LZ6|C Chain C, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With
Pf-877423
pdb|3LZ6|D Chain D, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With
Pf-877423
Length = 263
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 106 NDFEVLPAEIGNL-KNLQIILETFLP------DMMEKNRGHIVGISSMAGIVGLPNLVPY 158
N EI N+ K++++ +F+ M+ +++G I +SS+AG + P + PY
Sbjct: 99 NRLTFFHGEIDNVRKSMEVNFHSFVVLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPY 158
Query: 159 CASKFAV 165
ASKFA+
Sbjct: 159 SASKFAL 165
>pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
pdb|3DWF|B Chain B, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
pdb|3DWF|C Chain C, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
pdb|3DWF|D Chain D, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
Length = 276
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 106 NDFEVLPAEIGNL-KNLQIILETFLP------DMMEKNRGHIVGISSMAGIVGLPNLVPY 158
N EI N+ K++++ +F+ M+ +++G I +SS+AG + P + PY
Sbjct: 101 NRLTFFHGEIDNVRKSMEVNFHSFVVLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPY 160
Query: 159 CASKFAV 165
ASKFA+
Sbjct: 161 SASKFAL 167
>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|B Chain B, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|C Chain C, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|D Chain D, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
Length = 249
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
MM + G I+ I+S+ G+ G P YCASK
Sbjct: 130 MMRRRNGRIINITSIVGVTGNPGQANYCASK 160
>pdb|1XSE|A Chain A, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1
pdb|1XSE|B Chain B, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1
Length = 295
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 106 NDFEVLPAEIGNL-KNLQIILETFLP------DMMEKNRGHIVGISSMAGIVGLPNLVPY 158
N EI N+ K++++ +F+ M+ +++G I +SS+AG + P + PY
Sbjct: 122 NRLTFFHGEIDNVRKSMEVNFHSFVVLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPY 181
Query: 159 CASKFAV 165
ASKFA+
Sbjct: 182 SASKFAL 188
>pdb|3PGX|A Chain A, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
pdb|3PGX|B Chain B, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
pdb|3PGX|C Chain C, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
pdb|3PGX|D Chain D, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
Length = 280
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Query: 91 NFFMLETLRALYLGDNDFEVLPAEIG-NLKNLQIILETFLPDMMEK-NRGHIVGISSMAG 148
N +L R L D ++ + IG NL L +P M+E N G IV +SS AG
Sbjct: 112 NAGVLSWGRVWELTDEQWDTV---IGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAG 168
Query: 149 IVGLPNLVPYCASKFAVXXXXXXXXXXXXXXXXNSKIKFTSIFPFMVDTGLCKNPKIKMN 208
+ P Y ASK + I+ SI P+ V+T + + P+ M
Sbjct: 169 LKATPGNGHYSASKHGL----TALTNTLAIELGEYGIRVNSIHPYSVETPMIE-PEAMME 223
Query: 209 RLSSLPRGFGAFP 221
+ P +FP
Sbjct: 224 IFARHPSFVHSFP 236
>pdb|1YDE|A Chain A, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|B Chain B, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|C Chain C, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|D Chain D, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|E Chain E, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|F Chain F, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|G Chain G, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|H Chain H, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|I Chain I, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|J Chain J, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|K Chain K, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|L Chain L, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|M Chain M, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|N Chain N, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|O Chain O, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|P Chain P, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
Length = 270
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 133 MEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+ K++G+++ ISS+ G +G VPY A+K AV
Sbjct: 129 LRKSQGNVINISSLVGAIGQAQAVPYVATKGAV 161
>pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide
Ketoreductase With Nadph
pdb|4DBZ|B Chain B, Crystal Structure Of V151l Actinorhodin Polyketide
Ketoreductase With Nadph
Length = 281
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M+E+ G IV I+S G GL + PY ASK V
Sbjct: 151 MLERGTGRIVNIASTGGKQGLVHAAPYSASKHGV 184
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLPRG 66
I +++N++ +I P LANL NL LTLFNNQI L L L N +S +
Sbjct: 90 ILMNNNQIADITP-LANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDI-SA 146
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
L+ L + N + + N LE L +D VL A++ NL++L
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL-AKLTNLESL 200
>pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From
Staphylococcus Aureus Complex With Nadph
pdb|3SJ7|B Chain B, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From
Staphylococcus Aureus Complex With Nadph
Length = 252
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
NLK + ++ P M+ + G I+ +SS+ G VG P Y A+K V
Sbjct: 119 NLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGV 167
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLPRG 66
I +++N++ +I P LANL NL LTLFNNQI L L L N +S +
Sbjct: 90 ILMNNNQIADITP-LANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDI-SA 146
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
L+ L + N + + N LE L +D VL A++ NL++L
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL-AKLTNLESL 200
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 6 RITLSHNKLKEIPPG-LANLVNLEILTLFNNQIEXXXXXXXXXXKL-RILNLGMN-RLSS 62
RI L N++ +P NL IL L +N + L L+L N +L S
Sbjct: 35 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 63 L-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP----AEIGN 117
+ P F L L L L E PG F L L+ LYL DN + LP ++GN
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 118 LKNL 121
L +L
Sbjct: 154 LTHL 157
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 245 PGNFFMLETLRALYLGDNDFEVLP----AEIGNLKNL 277
PG F L L+ LYL DN + LP ++GNL +L
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 6 RITLSHNKLKEIPPG-LANLVNLEILTLFNNQIEXXXXXXXXXXKL-RILNLGMN-RLSS 62
RI L N++ +P NL IL L +N + L L+L N +L S
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 63 L-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP----AEIGN 117
+ P F L L L L E PG F L L+ LYL DN + LP ++GN
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 118 LKNL 121
L +L
Sbjct: 155 LTHL 158
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 245 PGNFFMLETLRALYLGDNDFEVLP----AEIGNLKNL 277
PG F L L+ LYL DN + LP ++GNL +L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
>pdb|2PD6|A Chain A, Structure Of Human Hydroxysteroid Dehydrogenase Type 8,
Hsd17b8
pdb|2PD6|B Chain B, Structure Of Human Hydroxysteroid Dehydrogenase Type 8,
Hsd17b8
pdb|2PD6|C Chain C, Structure Of Human Hydroxysteroid Dehydrogenase Type 8,
Hsd17b8
pdb|2PD6|D Chain D, Structure Of Human Hydroxysteroid Dehydrogenase Type 8,
Hsd17b8
Length = 264
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 11/159 (6%)
Query: 101 LYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYC 159
L++ ++D++ + A NLK ++ + ++ RG I+ ISS+ G VG Y
Sbjct: 109 LHMSEDDWDKVIAV--NLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYA 166
Query: 160 ASKFAVXXXXXXXXXXXXXXXXNSKIKFTSIFPFMVDTGLC-KNPKIKMNRLSSL-PRGF 217
ASK V I+ S+ P + T + K P+ +++++ + P G
Sbjct: 167 ASKAGV----IGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGH 222
Query: 218 GAFP--VLEAFSFTTILDLTYNNLNEQSLPGNFFMLETL 254
P V + +F D Y + G FM E L
Sbjct: 223 LGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENL 261
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 116 GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
G + +Q +E F E + G I+ S AG VG P L Y +SKFAV
Sbjct: 113 GVIWGIQAAVEAF---KKEGHGGKIINACSQAGHVGNPELAVYSSSKFAV 159
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 3 YITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXX-XXXXXXXXKLRILNLGMNRL 60
++ + L L+E+ PGL L L+ L L +N ++ L L L NR+
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 61 SSLPRGFGAFPVLEVLD--LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI 115
S+P AF L LD L + N + P F L L LYL N+ +LPAE+
Sbjct: 165 PSVPEH--AFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV 219
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 6 RITLSHNKLKEIPPG-LANLVNLEILTLFNNQIEXXXXXXXXXXKL-RILNLGMNRLSSL 63
RI L N++ +P + NL IL L +N + L L+L N +
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 64 --PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP----AEIGN 117
P F L L L L E PG F L L+ LYL DN+ + LP ++GN
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 118 LKNL 121
L +L
Sbjct: 154 LTHL 157
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 245 PGNFFMLETLRALYLGDNDFEVLP----AEIGNLKNL 277
PG F L L+ LYL DN+ + LP ++GNL +L
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 4 ITRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIEXX-XXXXXXXXKLRILNLGMNRLS 61
+T + L HN+L+ +P G+ + L NL L L NNQ++ +L+ L+L N+L
Sbjct: 135 LTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Query: 62 SLPRG 66
S+P G
Sbjct: 195 SVPDG 199
>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASU|B Chain B, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASV|A Chain A, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|B Chain B, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|C Chain C, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|D Chain D, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|E Chain E, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|F Chain F, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
Length = 248
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG 148
N K L + LP M+E+N GHI+ I S AG
Sbjct: 106 NNKGLVYMTRAVLPGMVERNHGHIINIGSTAG 137
>pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
Length = 317
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 127 TFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXXXXXXXNSKI 185
LP M+E+ +G ++ +SS G+ G P Y ASK V I
Sbjct: 176 AVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGV----QGLMLSLANEVGRHNI 231
Query: 186 KFTSIFPFMVDTGLCKNPKI 205
+ S+ P V+T + N K+
Sbjct: 232 RVNSVNPGAVNTEMALNEKL 251
>pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp
Bound
pdb|1X7G|B Chain B, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp
Bound
pdb|1X7H|A Chain A, Actinorhodin Polyketide Ketoreductase, With Nadph Bound
pdb|1X7H|B Chain B, Actinorhodin Polyketide Ketoreductase, With Nadph Bound
pdb|1XR3|A Chain A, Actinorhodin Polyketide Ketoreductase With Nadp And The
Inhibitor Isoniazid Bound
pdb|1XR3|B Chain B, Actinorhodin Polyketide Ketoreductase With Nadp And The
Inhibitor Isoniazid Bound
Length = 261
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M+E+ G IV I+S G G+ + PY ASK V
Sbjct: 131 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV 164
>pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
pdb|3GVC|B Chain B, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
pdb|3GVC|C Chain C, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
pdb|3GVC|D Chain D, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
Length = 277
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL+ + + P M+E+ G IV +SS+AG V + Y SK +
Sbjct: 134 NLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGI----IQLSRIT 189
Query: 177 XXXXXNSKIKFTSIFPFMVDT 197
+S I+ ++ P VDT
Sbjct: 190 AAELRSSGIRSNTLLPAFVDT 210
>pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
pdb|2RHR|A Chain A, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
Length = 277
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M+E+ G IV I+S G G+ + PY ASK V
Sbjct: 147 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV 180
>pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3CSD|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3QRW|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph
pdb|3QRW|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph
pdb|3RI3|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3RI3|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
Length = 281
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M+E+ G IV I+S G G+ + PY ASK V
Sbjct: 151 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV 184
>pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And
Inhibitor Emodin
pdb|2RH4|B Chain B, Actinorhodin Ketoreductase, Actkr, With Nadph And
Inhibitor Emodin
pdb|2RHC|B Chain B, Actinorhodin Ketordeuctase, Actkr, With Nadp+ And
Inhibitor Emodin
pdb|2RHC|A Chain A, Actinorhodin Ketordeuctase, Actkr, With Nadp+ And
Inhibitor Emodin
Length = 277
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M+E+ G IV I+S G G+ + PY ASK V
Sbjct: 147 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV 180
>pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide
Ketoreductase With Nadph
pdb|4DC1|B Chain B, Crystal Structure Of Y202f Actinorhodin Polyketide
Ketoreductase With Nadph
Length = 281
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M+E+ G IV I+S G G+ + PY ASK V
Sbjct: 151 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV 184
>pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide
Ketoreductase With Nadph
pdb|4DC0|B Chain B, Crystal Structure Of F189w Actinorhodin Polyketide
Ketoreductase With Nadph
Length = 281
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M+E+ G IV I+S G G+ + PY ASK V
Sbjct: 151 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV 184
>pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase
pdb|1W4Z|B Chain B, Structure Of Actinorhodin Polyketide (Actiii) Reductase
Length = 281
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
M+E+ G IV I+S G G+ + PY ASK V
Sbjct: 151 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV 184
>pdb|1NFR|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFR|B Chain B, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFR|C Chain C, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFR|D Chain D, Rv2002 Gene Product From Mycobacterium Tuberculosis
Length = 260
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL + + + + E RG I+ ISS+ G+ G Y A+KFAV
Sbjct: 112 NLTGVFLGIRAVVKPXKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALEL 171
Query: 177 XXXXXNSKIKFTSIFPFMVDT 197
S I+ SI P +V T
Sbjct: 172 GP----SGIRVNSIHPGLVKT 188
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQI 37
I +++N++ +I P LANL NL LTLFNNQI
Sbjct: 94 ILMNNNQIADITP-LANLTNLTGLTLFNNQI 123
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQI 37
I +++N++ +I P LANL NL LTLFNNQI
Sbjct: 90 ILMNNNQIADITP-LANLTNLTGLTLFNNQI 119
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQI 37
I +++N++ +I P LANL NL LTLFNNQI
Sbjct: 95 ILMNNNQIADITP-LANLTNLTGLTLFNNQI 124
>pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|B Chain B, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|C Chain C, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|D Chain D, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|E Chain E, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|F Chain F, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|G Chain G, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|H Chain H, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|B Chain B, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|C Chain C, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|D Chain D, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|B Chain B, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|C Chain C, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|D Chain D, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
Length = 255
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
LP M +N G I+ I+S+ G+VG Y A+K V
Sbjct: 122 LPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGV 158
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQI 37
I +++N++ +I P LANL NL LTLFNNQI
Sbjct: 90 ILMNNNQIADITP-LANLTNLTGLTLFNNQI 119
>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL
Dehydrogenase From Clostridium Thermocellum
Length = 247
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
NLK+ + + M+++ G I+ I+S+AGI+G Y ASK
Sbjct: 114 NLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASK 159
>pdb|3AK4|A Chain A, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
pdb|3AK4|B Chain B, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
pdb|3AK4|C Chain C, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
pdb|3AK4|D Chain D, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
Length = 263
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
QI FL +G IV +S+A VG P L Y ASKFAV
Sbjct: 126 QIACRHFLA---SNTKGVIVNTASLAAKVGAPLLAHYSASKFAV 166
>pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain
Dehydrogenase From Mycobacterium Paratuberculosis
pdb|3TJR|B Chain B, Crystal Structure Of A Rv0851c Ortholog Short Chain
Dehydrogenase From Mycobacterium Paratuberculosis
Length = 301
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 125 LETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXXXXXXXNS 183
+E FLP ++E+ G HI +S AG+V L Y +K+ V +
Sbjct: 147 VEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKP----N 202
Query: 184 KIKFTSIFPFMVDTGLCKNP-KIKMNR--LSSLPRG-FGAFPVL-EAFSFTTILDLTYNN 238
I + + P +V+T L N +I+ +S+ P G FG P E+ S + LT +
Sbjct: 203 GIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTADA 262
Query: 239 L 239
+
Sbjct: 263 I 263
>pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Burkholderia Pseudomallei At 2.05 A
Resolution
pdb|3FTP|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Burkholderia Pseudomallei At 2.05 A
Resolution
pdb|3FTP|C Chain C, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Burkholderia Pseudomallei At 2.05 A
Resolution
pdb|3FTP|D Chain D, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Burkholderia Pseudomallei At 2.05 A
Resolution
Length = 270
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 100 ALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159
A+ + D++++ + NLK + + L MM+ G IV I+S+ G G P V Y
Sbjct: 121 AMRMKDDEWDAVIDT--NLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYA 178
Query: 160 ASKFAVXXXXXXXXXXXXXXXXNSKIKFTSIFPFMVDTGLCKN 202
A+K V + I + P +DT + K
Sbjct: 179 AAKAGV----AGMTRALAREIGSRGITVNCVAPGFIDTDMTKG 217
>pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|B Chain B, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|C Chain C, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|D Chain D, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
Length = 244
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NLK + + M ++ GHI I+S+A + YC SKF
Sbjct: 117 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFG----QRGLVETM 172
Query: 177 XXXXXNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAF 226
++ T + P V T + +M L +P A PV++A+
Sbjct: 173 RLYARKCNVRITDVQPGAVYTPMWGKVDDEMQALMMMPEDIAA-PVVQAY 221
>pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
pdb|2JAP|B Chain B, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
pdb|2JAP|C Chain C, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
pdb|2JAP|D Chain D, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
Length = 247
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
NL L + LP ++ +++G +V +SS+AG V + N Y A+KF V
Sbjct: 115 NLLGLMYMTRAALPHLL-RSKGTVVQMSSIAGRVNVRNAAVYQATKFGV 162
>pdb|4GKB|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GKB|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GKB|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GKB|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GLO|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GLO|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GLO|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GLO|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GVX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
pdb|4GVX|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
pdb|4GVX|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
pdb|4GVX|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
Length = 258
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 133 MEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 164
++ RG IV ISS + G N YCASK A
Sbjct: 128 LKATRGAIVNISSKTAVTGQGNTSGYCASKGA 159
>pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|C Chain C, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|D Chain D, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|E Chain E, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|F Chain F, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
Length = 251
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 8/139 (5%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL ++ + + L MM+K +G I+ + S+ G +G Y A+K V
Sbjct: 117 NLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGV----IGFTKSM 172
Query: 177 XXXXXNSKIKFTSIFPFMVDTGLCK--NPKIKMNRLSSLPRGFGAFP--VLEAFSFTTIL 232
+ + ++ P ++T + K N + + L+ +P G P + A +F
Sbjct: 173 AREVASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASP 232
Query: 233 DLTYNNLNEQSLPGNFFML 251
+ Y + G +M+
Sbjct: 233 EAAYITGETLHVNGGMYMI 251
>pdb|2PH3|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl Carrier Protein]
Reductase Ttha0415 From Thermus Thermophilus
pdb|2PH3|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl Carrier Protein]
Reductase Ttha0415 From Thermus Thermophilus
Length = 245
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 105 DNDFE-VLPAEIGNLKNLQIILETFLPD---MMEKNRGHIVGISSMAGIVGLPNLVPYCA 160
D D+E VL A NL + T MM+ G IV I+S+ GI+G P Y A
Sbjct: 101 DEDWEAVLEA------NLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVA 154
Query: 161 SKFAVXXXXXXXXXXXXXXXXNSKIKFTSIFPFMVDTGLCKN--PKIKMNRLSSLPRGFG 218
SK + I ++ P ++T + + ++K L +P G
Sbjct: 155 SKAGL----IGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIPAGRF 210
Query: 219 AFP--VLEAFSF 228
P V EA +F
Sbjct: 211 GRPEEVAEAVAF 222
>pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92a) From Vibrio Cholerae
pdb|3TZK|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92a) From Vibrio Cholerae
Length = 251
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 8/139 (5%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL ++ + + L MM+K +G I+ + S+ G +G Y A+K V
Sbjct: 117 NLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGV----IGFTKSM 172
Query: 177 XXXXXNSKIKFTSIFPFMVDTGLCK--NPKIKMNRLSSLPRGFGAFP--VLEAFSFTTIL 232
+ + ++ P ++T + K N + + L+ +P G P + A +F
Sbjct: 173 AREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASP 232
Query: 233 DLTYNNLNEQSLPGNFFML 251
+ Y + G +M+
Sbjct: 233 EAAYITGETLHVNGGMYMI 251
>pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92d) From Vibrio Cholerae
pdb|3U09|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92d) From Vibrio Cholerae
Length = 251
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 8/139 (5%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL ++ + + L MM+K +G I+ + S+ G +G Y A+K V
Sbjct: 117 NLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGV----IGFTKSM 172
Query: 177 XXXXXNSKIKFTSIFPFMVDTGLCK--NPKIKMNRLSSLPRGFGAFP--VLEAFSFTTIL 232
+ + ++ P ++T + K N + + L+ +P G P + A +F
Sbjct: 173 AREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASP 232
Query: 233 DLTYNNLNEQSLPGNFFML 251
+ Y + G +M+
Sbjct: 233 EAAYITGETLHVNGGMYMI 251
>pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase
(Fabg) From Vibrio Cholerae O1 Complexed With Nadp+
(Space Group P62)
pdb|3RSH|B Chain B, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase
(Fabg) From Vibrio Cholerae O1 Complexed With Nadp+
(Space Group P62)
pdb|3RRO|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg) From Vibrio Cholerae
pdb|3RRO|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg) From Vibrio Cholerae
pdb|4I08|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acyl Carrier Protein
Reductase (Fabg) From Vibrio Cholerae In Complex With
Nadph
pdb|4I08|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acyl Carrier Protein
Reductase (Fabg) From Vibrio Cholerae In Complex With
Nadph
Length = 251
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 8/139 (5%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL ++ + + L MM+K +G I+ + S+ G +G Y A+K V
Sbjct: 117 NLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGV----IGFTKSM 172
Query: 177 XXXXXNSKIKFTSIFPFMVDTGLCK--NPKIKMNRLSSLPRGFGAFP--VLEAFSFTTIL 232
+ + ++ P ++T + K N + + L+ +P G P + A +F
Sbjct: 173 AREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASP 232
Query: 233 DLTYNNLNEQSLPGNFFML 251
+ Y + G +M+
Sbjct: 233 EAAYITGETLHVNGGMYMI 251
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 117 NLKNLQIILETFLPDMMEKN--RGHIVGISSMAGIVGLPNLVP--YCASKFAVXXXXXXX 172
N+ L I M E+N GHI+ I+SM+G LP V Y A+K+AV
Sbjct: 142 NVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAV--TALTE 199
Query: 173 XXXXXXXXXNSKIKFTSIFPFMVDT 197
+ I+ T I P +V+T
Sbjct: 200 GLRQELREAQTHIRATCISPGVVET 224
>pdb|2JAH|A Chain A, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
pdb|2JAH|B Chain B, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
pdb|2JAH|C Chain C, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
pdb|2JAH|D Chain D, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
Length = 247
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
NL L LP ++ +++G +V SS+AG V + N Y A+KF V
Sbjct: 115 NLLGLXYXTRAALPHLL-RSKGTVVQXSSIAGRVNVRNAAVYQATKFGV 162
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 50 LRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN-- 106
L +L L N LSSLPRG F P L L ++ NNL E+ F +L+ L L N
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRL 183
Query: 107 ---DFEVLPA 113
D ++P+
Sbjct: 184 THVDLSLIPS 193
>pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier
Protein Reductase From Streptomyces Coelicolor A3(2)
pdb|2NM0|B Chain B, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier
Protein Reductase From Streptomyces Coelicolor A3(2)
Length = 253
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXXXXXXXNSKIKFTSIF 191
M+ +G +V ISS+ G++G Y ASK + + I F +
Sbjct: 133 MLRAKKGRVVLISSVVGLLGSAGQANYAASKAGL----VGFARSLARELGSRNITFNVVA 188
Query: 192 PFMVDTGLCK--NPKIKMNRLSSLPRGFGAFP 221
P VDT + K + + N +S +P G A P
Sbjct: 189 PGFVDTDMTKVLTDEQRANIVSQVPLGRYARP 220
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 111
F F L+ LDLT +L+E LP L TL+ L L N FE L
Sbjct: 274 FHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENL 316
>pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|B Chain B, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|C Chain C, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|D Chain D, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
Length = 261
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 164
N+K ++ + +P+M ++ G +V +SS+A P PY SK A
Sbjct: 124 NVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTA 171
>pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|B Chain B, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|C Chain C, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|D Chain D, Crystal Structure Of A Mammalian Reductase
Length = 260
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 164
N+K ++ + +P+M ++ G ++ +SS+ PNL PY SK A
Sbjct: 123 NVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTA 170
>pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase
pdb|2EHD|B Chain B, Crystal Structure Analysis Of Oxidoreductase
Length = 234
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
NL + + +P ++ + G IV + S+AG Y ASKF +
Sbjct: 109 NLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGL----LGLAGAA 164
Query: 177 XXXXXNSKIKFTSIFPFMVDTGLCKN 202
+ ++ ++ P VDTG N
Sbjct: 165 MLDLREANVRVVNVLPGSVDTGFAGN 190
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 117 NLKNLQIILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFA 164
NL+++ + + DM+ + G IV +SSM V PNL+ Y ++K A
Sbjct: 107 NLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA 155
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 50 LRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN-- 106
L +L L N LSSLPRG F P L L ++ NNL E+ F +L+ L L N
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRL 177
Query: 107 ---DFEVLPA 113
D ++P+
Sbjct: 178 THVDLSLIPS 187
>pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase
Type1, Complexed With Nad+
Length = 267
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 96 ETLRAL--YLGDNDFEVLPAEIGNLKNLQ---------IILETFLP-DMMEKNRGH---- 139
+T R + + G D V A + N KN + +I T+L D M K G
Sbjct: 75 DTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGI 134
Query: 140 IVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXXXXXXXNSKIKFTSIFPFMVDTGL 199
I+ +SS+AG++ + YCASK + NS ++ +I P V+T +
Sbjct: 135 IINMSSLAGLMPVAQQPVYCASKHGI--VGFTRSAALAANLMNSGVRLNAICPGFVNTAI 192
Query: 200 CKNPKIKMN 208
++ + + N
Sbjct: 193 LESIEKEEN 201
>pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein
Reductase From Brassica Napus Complexed With Nadp+
pdb|2CDH|G Chain G, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|H Chain H, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|I Chain I, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|J Chain J, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|K Chain K, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|L Chain L, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 244
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
NL + + + MM+K +G I+ I+S+ G++G Y A+K V
Sbjct: 110 NLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGV 158
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNN-----QIEXXXXXXXXXXKLRILNLGMN 58
+ ++ LS N LKE PG + L NN + ++ L+L N
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN 232
Query: 59 R-LSSLPRGFGA--FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAE 114
+ L++ F + L LDL+YNNL++ G+F L +LR L L N+ + L P
Sbjct: 233 QLLATSESTFSGLKWTNLTQLDLSYNNLHDVG-NGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 115 IGNLKNLQII 124
L NL+ +
Sbjct: 292 FYGLSNLRYL 301
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 25/120 (20%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSL 63
IT + L+HN+L+ +PP +L IL+ G N +S L
Sbjct: 27 ITVLNLTHNQLRRLPP----------------------TNFTRYSQLAILDAGFNSISKL 64
Query: 64 -PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNL 121
P P+L+VL+L +N L++ S F L L L N + + N KNL
Sbjct: 65 EPELCQILPLLKVLNLQHNELSQIS-DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNL 123
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 7 ITLSHNKLKEIPPG---LANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRL--- 60
+ LS N L+ + L L NL L + N K+R LNL +
Sbjct: 392 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 451
Query: 61 -SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112
+ +P+ LEVLD++ NNL+ SL L L+ LY+ N + LP
Sbjct: 452 KTCIPQ------TLEVLDVSNNNLDSFSL-----FLPRLQELYISRNKLKTLP 493
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 3 YITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLS 61
++ + L+HN L +PPG+ ++L L L+L +N++ L IL++ N+L
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL-TVLSHNDLPANLEILDISRNQL- 538
Query: 62 SLPRGFGAFPVLEVLDLTYN 81
L F L VLD+T+N
Sbjct: 539 -LAPNPDVFVSLSVLDITHN 557
>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
pdb|3LL6|B Chain B, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
Length = 337
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 95 LETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPN 154
L R L G F ++G+ + + L+ L + EKNR I + M + G PN
Sbjct: 30 LRVRRVLAEGGFAFVYEAQDVGSGR--EYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPN 87
Query: 155 LVPYCAS 161
+V +C++
Sbjct: 88 IVQFCSA 94
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 7 ITLSHNKLKEIPPG---LANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRL--- 60
+ LS N L+ + L L NL L + N K+R LNL +
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425
Query: 61 -SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112
+ +P+ LEVLD++ NNL+ SL L L+ LY+ N + LP
Sbjct: 426 KTCIPQ------TLEVLDVSNNNLDSFSL-----FLPRLQELYISRNKLKTLP 467
>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZJZ|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK0|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZK1|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK2|A Chain A, Orthorhombic Crystal Structure Of The Apo-Form Of
R-Specific Alcohol Dehydrogenase (Mutant G37d) From
Lactobacillus Brevis
pdb|1ZK3|A Chain A, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|B Chain B, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|C Chain C, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|D Chain D, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|E Chain E, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|F Chain F, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|G Chain G, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|H Chain H, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
Length = 251
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 135 KNRG---HIVGISSMAGIVGLPNLVPYCASKFAV 165
KN+G I+ +SS+ G VG P+L Y ASK AV
Sbjct: 129 KNKGLGASIINMSSIEGFVGDPSLGAYNASKGAV 162
>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh)
(Apoenyzme) From Lactobacillus Brevis
pdb|1ZK4|A Chain A, Structure Of R-specific Alcohol Dehydrogenase (wildtype)
From Lactobacillus Brevis In Complex With Acetophenone
And Nadp
Length = 251
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 135 KNRG---HIVGISSMAGIVGLPNLVPYCASKFAV 165
KN+G I+ +SS+ G VG P+L Y ASK AV
Sbjct: 129 KNKGLGASIINMSSIEGFVGDPSLGAYNASKGAV 162
>pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From
Streptococcus Suis Type 2
pdb|3O03|A Chain A, Quaternary Complex Structure Of Gluconate 5-Dehydrogenase
From Streptococcus Suis Type 2
Length = 291
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
I+ + +P M++K G I+ I SM +G + Y A+K
Sbjct: 148 IVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAK 187
>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
pdb|3IOY|B Chain B, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
Length = 319
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 117 NLKNLQIILETFLPDMMEKNR------GHIVGISSMAGIVGLPNLVPYCASKFAV 165
NL + + TF+P M+E+ + GH+V +SMA + + Y +KFAV
Sbjct: 118 NLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAV 172
>pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate
Dehydrogenase
pdb|1WMB|B Chain B, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate
Dehydrogenase
pdb|1X1T|A Chain A, Crystal Structure Of D-3-hydroxybutyrate Dehydrogenase
From Pseudomonas Fragi Complexed With Nad+
pdb|2ZTL|A Chain A, Closed Conformation Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+ And L-3-Hydroxybutyrate
pdb|2ZTL|B Chain B, Closed Conformation Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+ And L-3-Hydroxybutyrate
pdb|2ZTL|C Chain C, Closed Conformation Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+ And L-3-Hydroxybutyrate
pdb|2ZTL|D Chain D, Closed Conformation Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+ And L-3-Hydroxybutyrate
pdb|2ZTV|A Chain A, The Binary Complex Of D-3-Hydroxybutyrate Dehydrogenase
With Nad+
pdb|2ZTV|B Chain B, The Binary Complex Of D-3-Hydroxybutyrate Dehydrogenase
With Nad+
pdb|2ZTV|C Chain C, The Binary Complex Of D-3-Hydroxybutyrate Dehydrogenase
With Nad+
pdb|2ZTV|D Chain D, The Binary Complex Of D-3-Hydroxybutyrate Dehydrogenase
With Nad+
Length = 260
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
LP M ++ G I+ I+S G+V N Y A+K V
Sbjct: 126 LPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGV 162
>pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp
pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp
Length = 273
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXXXXXXXNSKIKFTS 189
P + G+++ +SS+AG LP++ Y ASK A+ I+ S
Sbjct: 143 PLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAI----NQMTKSLACEWAKDNIRVNS 198
Query: 190 IFPF-----MVDTGLCKNPKIK 206
+ P +V+T + KNP K
Sbjct: 199 VAPGVILTPLVETAIKKNPHQK 220
>pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase
pdb|2ZTM|B Chain B, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase
pdb|2ZTM|C Chain C, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase
pdb|2ZTM|D Chain D, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Length = 260
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
LP M ++ G I+ I+S G+V N Y A+K V
Sbjct: 126 LPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGV 162
>pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+
pdb|2ZTU|B Chain B, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+
pdb|2ZTU|C Chain C, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+
pdb|2ZTU|D Chain D, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+
Length = 260
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
LP M ++ G I+ I+S G+V N Y A+K V
Sbjct: 126 LPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGV 162
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 50 LRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
L ILNL N++S + F LEVLDL N + ++ + LE + +YL N +
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSL 63
IT + L+HN+L+ +P AN LT L++G N +S L
Sbjct: 27 ITVLNLTHNQLRRLPA--ANFTRYSQLT--------------------SLDVGFNTISKL 64
Query: 64 -PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
P P+L+VL+L +N L++ S F L L+L N +
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQ 110
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 50 LRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
L ILNL N++S + F LEVLDL N + ++ + LE + +YL N +
Sbjct: 388 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 447
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSL 63
IT + L+HN+L+ +P AN LT L++G N +S L
Sbjct: 32 ITVLNLTHNQLRRLPA--ANFTRYSQLT--------------------SLDVGFNTISKL 69
Query: 64 -PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
P P+L+VL+L +N L++ S F L L+L N +
Sbjct: 70 EPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQ 115
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 50 LRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
L ILNL N++S + F LEVLDL N + ++ + LE + +YL N +
Sbjct: 393 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 452
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSL 63
IT + L+HN+L+ +P AN LT L++G N +S L
Sbjct: 37 ITVLNLTHNQLRRLPA--ANFTRYSQLT--------------------SLDVGFNTISKL 74
Query: 64 -PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
P P+L+VL+L +N L++ S F L L+L N +
Sbjct: 75 EPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQ 120
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNL-GMNRLS 61
++ T+ L E+P LE LTL N + +LR L++ L+
Sbjct: 105 HLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
LP E L T + Q L L++LR + G LPA I NL+NL
Sbjct: 165 ELP---------EPLASTDASGEHQGL----VNLQSLRLEWTG---IRSLPASIANLQNL 208
Query: 122 Q 122
+
Sbjct: 209 K 209
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 4 ITRITLSHNKLKEIP--PGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLS 61
I I + +N LK P L L L NQ+E KL LNL N+++
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366
Query: 62 SLPRGFGAF-PVLEVLDLTYNNL 83
+P F F +E L +N L
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKL 389
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 4 ITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIEXXXXXXXXXX-KLRILNLGMNRLS 61
+ + L HNK++ I L L L L +NQI LR L+L N+LS
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNE 85
+P G +L+V+ L NN+ +
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNITK 278
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 90 GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
G+ L TLR L+L +N +PA + +LK LQ++
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVV 269
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 246 GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM 280
G+ L TLR L+L +N +PA + +LK LQ++
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVV 269
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 11 HNKLKEIPPGL-----ANLVNLEILTLFNNQIEXXXXXXXXX--XKLRILNLGMNRLSSL 63
N E P G+ A V L+ L L +N + +L LNL L +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLP 89
P+G A L VLDL+YN L+ P
Sbjct: 269 PKGLPA--KLSVLDLSYNRLDRNPSP 292
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 14 LKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLPRGFGAFPVL 73
++++ L+ L + L L N IE LRIL+LG N + + L
Sbjct: 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGME-NLRILSLGRNLIKKIENLDAVADTL 95
Query: 74 EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
E L ++YN + SL G L LR LY+ +N
Sbjct: 96 EELWISYNQI--ASLSG-IEKLVNLRVLYMSNN 125
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 14 LKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSLPRGFGAFPVL 73
++++ L+ L + L L N IE LRIL+LG N + + L
Sbjct: 38 IEKMDATLSTLKACKHLALSTNNIEKISSLSGME-NLRILSLGRNLIKKIENLDAVADTL 96
Query: 74 EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
E L ++YN + SL G L LR LY+ +N
Sbjct: 97 EELWISYNQI--ASLSG-IEKLVNLRVLYMSNN 126
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Query: 16 EIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXK-LRILNLGMNRLS-SLPRGFGAFPVL 73
EIP GL+N NL ++L NN++ + L IL L N S ++P G L
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 74 EVLDLTYNNLNEQSLPGNFF---------MLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
LDL N N ++P F + R +Y+ ++ + GNL Q I
Sbjct: 538 IWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 596
Query: 125 LETFLPDMMEKNRGHIV 141
L + +N +I
Sbjct: 597 RSEQLNRLSTRNPCNIT 613
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Query: 16 EIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXK-LRILNLGMNRLS-SLPRGFGAFPVL 73
EIP GL+N NL ++L NN++ + L IL L N S ++P G L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 74 EVLDLTYNNLNEQSLPGNFF---------MLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
LDL N N ++P F + R +Y+ ++ + GNL Q I
Sbjct: 541 IWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 125 LETFLPDMMEKNRGHIV 141
L + +N +I
Sbjct: 600 RSEQLNRLSTRNPCNIT 616
>pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|B Chain B, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|C Chain C, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|D Chain D, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|E Chain E, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|F Chain F, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|G Chain G, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|H Chain H, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1Q7B|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
In Complex With Nadp+
pdb|1Q7B|B Chain B, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
In Complex With Nadp+
pdb|1Q7B|C Chain C, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
In Complex With Nadp+
pdb|1Q7B|D Chain D, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
In Complex With Nadp+
Length = 244
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
NL ++ + + + MM+K G I+ I S+ G +G Y A+K
Sbjct: 110 NLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAK 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,812,352
Number of Sequences: 62578
Number of extensions: 311258
Number of successful extensions: 988
Number of sequences better than 100.0: 167
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 296
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)