Query psy5270
Match_columns 352
No_of_seqs 310 out of 2262
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 22:05:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-32 3.6E-37 280.2 14.2 313 2-325 394-751 (768)
2 4fcg_A Uncharacterized protein 100.0 1.3E-32 4.3E-37 252.4 9.1 215 2-280 81-306 (328)
3 3rgz_A Protein brassinosteroid 100.0 1.7E-32 6E-37 278.5 0.7 80 228-309 633-719 (768)
4 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-30 5.9E-35 236.6 7.3 242 2-285 50-301 (313)
5 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-30 1.1E-34 234.7 8.8 223 25-288 50-281 (313)
6 4eco_A Uncharacterized protein 100.0 2E-30 6.8E-35 258.0 2.0 275 1-285 248-576 (636)
7 4eco_A Uncharacterized protein 100.0 5.2E-30 1.8E-34 255.0 -0.1 260 3-280 82-462 (636)
8 4ecn_A Leucine-rich repeat pro 99.9 3.1E-29 1.1E-33 255.1 2.3 125 1-128 447-604 (876)
9 4ecn_A Leucine-rich repeat pro 99.9 5.6E-29 1.9E-33 253.3 4.1 274 1-285 490-816 (876)
10 4fcg_A Uncharacterized protein 99.9 2.2E-28 7.4E-33 224.2 6.2 203 1-268 103-317 (328)
11 3v47_A TOLL-like receptor 5B a 99.9 5.1E-28 1.7E-32 231.1 8.5 126 2-128 30-163 (455)
12 3oja_B Anopheles plasmodium-re 99.9 1.1E-27 3.9E-32 236.6 8.0 273 2-287 75-357 (597)
13 3o6n_A APL1; leucine-rich repe 99.9 1.7E-27 6E-32 223.2 6.1 124 2-127 45-173 (390)
14 3t6q_A CD180 antigen; protein- 99.9 3.5E-27 1.2E-31 233.3 7.3 125 3-128 255-385 (606)
15 3v47_A TOLL-like receptor 5B a 99.9 3.4E-27 1.2E-31 225.4 5.5 117 1-118 53-177 (455)
16 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-25 3.9E-30 206.3 14.7 238 3-287 34-276 (332)
17 1xku_A Decorin; proteoglycan, 99.9 2E-26 6.9E-31 211.1 9.4 240 3-287 32-275 (330)
18 2z66_A Variable lymphocyte rec 99.9 1.3E-26 4.3E-31 210.2 7.5 221 3-286 29-259 (306)
19 3o6n_A APL1; leucine-rich repe 99.9 3.1E-27 1E-31 221.5 2.5 124 1-127 68-194 (390)
20 2id5_A Lingo-1, leucine rich r 99.9 4.9E-26 1.7E-30 218.9 10.0 279 2-288 32-333 (477)
21 3vq2_A TLR4, TOLL-like recepto 99.9 3.2E-26 1.1E-30 226.5 7.8 81 229-310 450-537 (606)
22 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-26 4.7E-31 226.3 4.9 127 2-128 26-157 (549)
23 4fmz_A Internalin; leucine ric 99.9 4.2E-26 1.4E-30 210.2 7.8 255 2-286 44-322 (347)
24 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-25 5.4E-30 200.9 10.9 120 5-127 14-137 (285)
25 3bz5_A Internalin-J, INLJ; leu 99.9 3.4E-26 1.2E-30 218.7 6.6 117 1-128 41-157 (457)
26 3t6q_A CD180 antigen; protein- 99.9 3E-25 1E-29 219.5 13.4 245 1-285 277-533 (606)
27 2z7x_B TOLL-like receptor 1, v 99.9 2.2E-26 7.7E-31 223.5 5.3 116 2-121 21-138 (520)
28 3zyi_A Leucine-rich repeat-con 99.9 1.5E-25 5.2E-30 214.1 10.1 242 4-287 56-302 (452)
29 2z80_A TOLL-like receptor 2, v 99.9 2.1E-26 7.2E-31 213.0 3.9 248 3-287 53-313 (353)
30 3vq2_A TLR4, TOLL-like recepto 99.9 2E-26 6.8E-31 227.9 3.8 265 2-287 285-557 (606)
31 1wwl_A Monocyte differentiatio 99.9 2.9E-26 1E-30 208.5 4.6 218 4-285 65-306 (312)
32 4g8a_A TOLL-like receptor 4; l 99.9 5.9E-26 2E-30 225.0 7.0 121 3-124 53-178 (635)
33 1p9a_G Platelet glycoprotein I 99.9 1.2E-24 4.3E-29 195.7 14.1 196 1-265 9-208 (290)
34 2z81_A CD282 antigen, TOLL-lik 99.9 5.4E-26 1.9E-30 222.1 5.5 125 1-126 49-179 (549)
35 3oja_B Anopheles plasmodium-re 99.9 3.1E-26 1.1E-30 226.3 3.5 274 2-287 51-336 (597)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.7E-26 2.3E-30 222.4 5.8 107 2-110 52-160 (562)
37 2z7x_B TOLL-like receptor 1, v 99.9 6.4E-26 2.2E-30 220.3 5.3 102 1-108 44-150 (520)
38 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-25 7.1E-30 223.6 9.0 269 2-281 25-335 (680)
39 2id5_A Lingo-1, leucine rich r 99.9 2.3E-25 8E-30 214.1 8.9 260 5-284 14-305 (477)
40 2z66_A Variable lymphocyte rec 99.9 1.2E-25 4E-30 203.8 6.3 201 1-265 51-261 (306)
41 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-25 5E-30 229.9 7.8 272 2-281 24-368 (844)
42 1ozn_A Reticulon 4 receptor; N 99.9 6.7E-25 2.3E-29 196.8 10.7 200 2-265 32-238 (285)
43 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-24 6.1E-29 198.3 13.7 255 9-310 11-280 (332)
44 1o6v_A Internalin A; bacterial 99.9 2.2E-25 7.6E-30 213.8 7.8 80 2-84 68-147 (466)
45 3zyj_A Leucine-rich repeat-con 99.9 5.8E-25 2E-29 209.3 10.5 242 4-287 45-291 (440)
46 3oja_A Leucine-rich immune mol 99.9 1.2E-25 4.1E-30 216.7 5.5 229 2-280 34-267 (487)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-25 3.5E-30 221.0 4.5 102 1-108 75-181 (562)
48 1xku_A Decorin; proteoglycan, 99.9 1.7E-24 5.9E-29 198.2 12.0 223 2-270 52-281 (330)
49 3o53_A Protein LRIM1, AGAP0063 99.9 4.6E-26 1.6E-30 207.7 1.3 230 2-280 34-267 (317)
50 1wwl_A Monocyte differentiatio 99.9 2.6E-26 9E-31 208.8 -0.8 197 1-265 94-309 (312)
51 2z63_A TOLL-like receptor 4, v 99.9 4.5E-25 1.5E-29 216.4 7.6 119 2-120 52-174 (570)
52 2z62_A TOLL-like receptor 4, v 99.9 1.1E-24 3.9E-29 194.4 9.1 199 3-265 29-237 (276)
53 1o6v_A Internalin A; bacterial 99.9 3.2E-25 1.1E-29 212.7 5.6 261 2-281 46-315 (466)
54 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-24 5.5E-29 217.1 10.3 278 1-285 48-363 (680)
55 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-24 1.1E-28 205.1 11.9 116 1-128 63-179 (457)
56 3oja_A Leucine-rich immune mol 99.9 2E-25 6.7E-30 215.2 3.3 212 1-260 57-270 (487)
57 4fmz_A Internalin; leucine ric 99.9 5.2E-25 1.8E-29 202.9 6.0 247 21-285 40-297 (347)
58 3zyj_A Leucine-rich repeat-con 99.9 5.1E-24 1.7E-28 202.8 12.0 220 26-287 44-267 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 6.6E-24 2.3E-28 202.7 12.1 219 26-286 55-277 (452)
60 2o6q_A Variable lymphocyte rec 99.9 1.7E-23 5.7E-28 186.3 13.6 197 3-265 17-218 (270)
61 3rfs_A Internalin B, repeat mo 99.9 4.9E-24 1.7E-28 190.0 9.7 204 1-277 40-248 (272)
62 1h6u_A Internalin H; cell adhe 99.9 1.9E-24 6.6E-29 196.2 5.8 196 2-271 41-236 (308)
63 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-24 7.4E-29 221.2 6.3 261 5-285 7-348 (844)
64 2z63_A TOLL-like receptor 4, v 99.9 5.8E-24 2E-28 208.5 7.6 243 2-287 282-530 (570)
65 2z80_A TOLL-like receptor 2, v 99.9 1.3E-24 4.4E-29 201.0 2.5 230 1-271 75-320 (353)
66 2xwt_C Thyrotropin receptor; s 99.9 1E-23 3.6E-28 184.2 7.9 197 14-280 23-231 (239)
67 3cvr_A Invasion plasmid antige 99.9 1.7E-23 5.7E-28 204.1 9.8 196 3-278 60-257 (571)
68 4glp_A Monocyte differentiatio 99.9 6.3E-24 2.1E-28 192.9 5.6 218 4-282 66-301 (310)
69 1jl5_A Outer protein YOPM; leu 99.9 4.9E-24 1.7E-28 203.6 5.1 114 3-127 132-245 (454)
70 2o6q_A Variable lymphocyte rec 99.9 1.2E-22 4E-27 180.8 13.2 177 2-241 37-219 (270)
71 2z62_A TOLL-like receptor 4, v 99.9 1.8E-23 6.3E-28 186.6 7.9 223 6-293 11-241 (276)
72 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-23 8E-28 205.4 7.9 99 3-114 41-139 (622)
73 1p9a_G Platelet glycoprotein I 99.9 2.6E-22 8.7E-27 180.6 12.9 176 2-241 31-209 (290)
74 4g8a_A TOLL-like receptor 4; l 99.9 5.3E-23 1.8E-27 203.7 8.9 120 6-128 35-157 (635)
75 1jl5_A Outer protein YOPM; leu 99.9 3E-23 1E-27 198.1 5.9 241 1-287 152-408 (454)
76 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-23 5.4E-28 190.9 2.9 217 1-265 57-276 (317)
77 3m19_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 172.9 13.8 175 3-266 15-193 (251)
78 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-21 4E-26 193.3 13.0 105 2-120 61-165 (622)
79 3rfs_A Internalin B, repeat mo 99.9 1.3E-21 4.5E-26 174.2 10.6 184 1-255 62-249 (272)
80 1h6u_A Internalin H; cell adhe 99.9 5.2E-22 1.8E-26 180.1 7.5 204 9-287 26-229 (308)
81 2o6s_A Variable lymphocyte rec 99.8 4.6E-21 1.6E-25 163.7 11.4 176 5-276 10-190 (208)
82 4ay9_X Follicle-stimulating ho 99.8 4.9E-22 1.7E-26 183.5 5.7 232 5-280 12-251 (350)
83 4glp_A Monocyte differentiatio 99.8 3.5E-22 1.2E-26 181.3 3.8 197 2-265 91-307 (310)
84 1h6t_A Internalin B; cell adhe 99.8 2E-21 7E-26 174.8 8.6 172 2-269 46-217 (291)
85 2o6s_A Variable lymphocyte rec 99.8 4.4E-20 1.5E-24 157.6 13.3 120 2-122 28-151 (208)
86 3cvr_A Invasion plasmid antige 99.8 3E-21 1E-25 188.2 6.8 172 2-254 80-256 (571)
87 2ca6_A RAN GTPase-activating p 99.8 8.4E-23 2.9E-27 191.1 -6.3 83 196-285 214-313 (386)
88 2v70_A SLIT-2, SLIT homolog 2 99.8 3.9E-20 1.3E-24 159.5 10.2 104 5-111 14-120 (220)
89 2xwt_C Thyrotropin receptor; s 99.8 1.6E-20 5.3E-25 163.9 7.6 193 2-263 31-237 (239)
90 3m19_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 160.0 11.8 177 25-290 14-194 (251)
91 3e6j_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 157.8 11.4 109 5-116 22-132 (229)
92 2xot_A Amphoterin-induced prot 99.8 8.2E-20 2.8E-24 169.3 10.8 172 5-265 21-202 (361)
93 1xeu_A Internalin C; cellular 99.8 3.5E-21 1.2E-25 170.7 1.4 112 3-122 20-131 (263)
94 1m9s_A Internalin B; cell inva 99.8 4.1E-20 1.4E-24 181.9 9.0 171 2-268 43-213 (605)
95 1dce_A Protein (RAB geranylger 99.8 1.2E-23 4E-28 205.9 -16.2 189 2-280 349-565 (567)
96 4ay9_X Follicle-stimulating ho 99.8 2.7E-20 9.1E-25 171.8 6.2 218 2-264 30-258 (350)
97 2v9t_B SLIT homolog 2 protein 99.8 2.7E-19 9.2E-24 154.2 11.1 104 5-112 14-120 (220)
98 4ezg_A Putative uncharacterize 99.8 1.3E-19 4.4E-24 153.5 8.3 97 22-121 41-138 (197)
99 4b8c_D Glucose-repressible alc 99.8 2.6E-20 8.8E-25 187.5 4.5 79 41-121 217-295 (727)
100 4b8c_D Glucose-repressible alc 99.8 1.6E-20 5.5E-25 188.9 2.5 110 17-128 216-325 (727)
101 1h6t_A Internalin B; cell adhe 99.8 2.4E-19 8.4E-24 161.1 7.7 182 9-287 31-212 (291)
102 1m9s_A Internalin B; cell inva 99.8 1.6E-19 5.5E-24 177.7 5.7 185 6-287 25-209 (605)
103 2ast_B S-phase kinase-associat 99.8 2.5E-20 8.4E-25 170.7 -0.2 107 3-109 71-182 (336)
104 2v9t_B SLIT homolog 2 protein 99.8 8E-19 2.7E-23 151.2 9.3 126 2-128 32-161 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 8.6E-19 2.9E-23 151.1 8.7 126 2-128 32-162 (220)
106 3goz_A Leucine-rich repeat-con 99.8 5E-21 1.7E-25 177.5 -6.6 102 7-109 3-122 (362)
107 4ezg_A Putative uncharacterize 99.8 4.7E-19 1.6E-23 150.0 6.2 108 2-112 44-153 (197)
108 2je0_A Acidic leucine-rich nuc 99.8 3E-19 1E-23 144.1 4.2 124 2-126 17-147 (149)
109 1xeu_A Internalin C; cellular 99.8 3.4E-18 1.1E-22 151.4 10.8 113 1-121 40-152 (263)
110 3e6j_A Variable lymphocyte rec 99.7 3.4E-18 1.2E-22 148.2 9.8 125 2-128 40-168 (229)
111 1z7x_W Ribonuclease inhibitor; 99.7 5.7E-22 1.9E-26 189.4 -15.9 108 2-109 56-183 (461)
112 2ell_A Acidic leucine-rich nuc 99.7 1.1E-18 3.9E-23 143.7 6.0 126 2-128 24-156 (168)
113 2ast_B S-phase kinase-associat 99.7 6.7E-20 2.3E-24 167.8 -1.5 205 1-273 92-315 (336)
114 2ca6_A RAN GTPase-activating p 99.7 1.9E-20 6.4E-25 175.1 -5.7 234 1-268 31-320 (386)
115 1w8a_A SLIT protein; signaling 99.7 3.9E-18 1.3E-22 143.7 8.2 121 5-128 11-135 (192)
116 2wfh_A SLIT homolog 2 protein 99.7 6.3E-18 2.2E-22 142.6 8.8 121 5-128 13-135 (193)
117 1z7x_W Ribonuclease inhibitor; 99.7 4.7E-21 1.6E-25 183.0 -12.7 76 198-280 256-346 (461)
118 2xot_A Amphoterin-induced prot 99.7 2.1E-17 7.3E-22 153.0 10.3 113 2-115 39-155 (361)
119 1a9n_A U2A', U2A'; complex (nu 99.7 9.2E-18 3.1E-22 139.4 6.0 124 1-128 18-149 (176)
120 1w8a_A SLIT protein; signaling 99.7 7.5E-17 2.6E-21 135.9 11.1 106 3-109 30-139 (192)
121 1dce_A Protein (RAB geranylger 99.7 6.2E-17 2.1E-21 158.3 10.9 111 3-116 442-553 (567)
122 2r9u_A Variable lymphocyte rec 99.7 2.8E-16 9.6E-21 130.2 12.2 110 5-118 15-127 (174)
123 2wfh_A SLIT homolog 2 protein 99.7 3.1E-16 1.1E-20 132.2 11.9 107 2-109 31-139 (193)
124 3goz_A Leucine-rich repeat-con 99.7 2.8E-18 9.7E-23 158.9 -0.9 203 2-282 22-260 (362)
125 3g39_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 129.3 11.5 107 4-113 11-119 (170)
126 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 4.2E-21 131.4 8.3 112 1-115 48-166 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 1.5E-16 5E-21 128.2 6.9 87 24-112 16-104 (149)
128 2o6r_A Variable lymphocyte rec 99.6 1.1E-15 3.6E-20 126.9 12.0 118 6-126 11-131 (177)
129 2o6r_A Variable lymphocyte rec 99.6 4.4E-16 1.5E-20 129.2 9.2 110 2-112 28-140 (177)
130 1a9n_A U2A', U2A'; complex (nu 99.6 1.3E-15 4.5E-20 126.3 6.4 106 2-110 42-154 (176)
131 3ogk_B Coronatine-insensitive 99.6 3.6E-18 1.2E-22 168.1 -11.5 123 2-126 164-325 (592)
132 1ds9_A Outer arm dynein; leuci 99.5 8.9E-18 3E-22 142.2 -10.3 122 3-128 19-149 (198)
133 1ds9_A Outer arm dynein; leuci 99.5 1.7E-17 5.8E-22 140.5 -10.9 104 2-109 48-153 (198)
134 3ogk_B Coronatine-insensitive 99.5 6.6E-17 2.3E-21 159.1 -9.9 243 2-281 112-384 (592)
135 2ifg_A High affinity nerve gro 99.5 1.2E-13 4.3E-18 126.7 11.2 102 6-110 12-117 (347)
136 3g39_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 116.9 6.5 100 26-128 10-111 (170)
137 2r9u_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 116.2 6.6 98 27-128 14-114 (174)
138 3sb4_A Hypothetical leucine ri 99.5 1.7E-14 5.8E-19 131.7 3.5 98 1-105 48-157 (329)
139 2p1m_B Transport inhibitor res 99.4 8.5E-16 2.9E-20 151.1 -13.3 77 197-280 288-377 (594)
140 2ifg_A High affinity nerve gro 99.3 1.2E-12 4E-17 120.2 5.4 98 28-127 11-111 (347)
141 2p1m_B Transport inhibitor res 99.2 1.5E-13 5.2E-18 135.0 -6.5 105 2-107 66-195 (594)
142 3i9v_6 NADH-quinone oxidoreduc 99.1 8.1E-11 2.8E-15 94.9 4.1 71 278-349 97-167 (181)
143 3sb4_A Hypothetical leucine ri 99.0 9.2E-10 3.2E-14 100.1 9.5 122 1-126 100-304 (329)
144 3un9_A NLR family member X1; l 98.9 3.4E-11 1.1E-15 111.6 -4.7 127 2-128 72-220 (372)
145 4fdw_A Leucine rich hypothetic 98.9 5.6E-09 1.9E-13 97.6 8.9 105 13-124 123-231 (401)
146 3un9_A NLR family member X1; l 98.8 3.5E-10 1.2E-14 104.7 0.5 127 2-128 101-248 (372)
147 4fdw_A Leucine rich hypothetic 98.8 6.1E-09 2.1E-13 97.3 6.8 109 3-117 136-247 (401)
148 1io0_A Tropomodulin; LRR prote 98.7 2.2E-09 7.5E-14 89.3 1.7 108 2-109 36-164 (185)
149 3rw6_A Nuclear RNA export fact 98.7 4.3E-09 1.5E-13 92.3 1.6 80 30-112 148-237 (267)
150 3rw6_A Nuclear RNA export fact 98.5 8.9E-08 3E-12 83.9 4.3 94 7-102 148-257 (267)
151 1io0_A Tropomodulin; LRR prote 98.3 3.7E-08 1.3E-12 81.8 -1.6 90 20-109 31-136 (185)
152 2ra8_A Uncharacterized protein 98.2 1.9E-07 6.6E-12 85.8 0.8 124 2-127 139-287 (362)
153 2ra8_A Uncharacterized protein 98.2 5.4E-07 1.8E-11 82.8 2.2 125 1-128 171-316 (362)
154 1wui_S Periplasmic [NIFE] hydr 97.9 2.1E-06 7E-11 74.6 1.4 61 279-339 101-167 (267)
155 1yq9_A Periplasmic [NIFE] hydr 97.9 1.8E-06 6E-11 74.9 0.8 71 279-351 99-175 (264)
156 4fs7_A Uncharacterized protein 97.9 1.6E-05 5.6E-10 73.8 7.4 53 2-56 71-125 (394)
157 1h2a_S Hydrogenase; SO ligand, 97.8 2.5E-06 8.5E-11 75.7 0.3 57 281-337 153-215 (317)
158 2wpn_A Periplasmic [nifese] hy 97.8 5.5E-06 1.9E-10 73.5 2.2 62 281-342 144-213 (317)
159 3rgw_S Membrane-bound hydrogen 97.8 1.1E-05 3.7E-10 71.8 3.4 72 279-351 102-177 (339)
160 3rfe_A Platelet glycoprotein I 97.7 5.6E-05 1.9E-09 58.6 6.3 53 29-83 12-67 (130)
161 3ayx_B Membrane-bound hydrogen 97.7 1.2E-05 4E-10 70.2 1.6 60 279-338 108-174 (283)
162 3myr_A Hydrogenase (NIFE) smal 97.6 8.1E-06 2.8E-10 70.6 0.5 72 279-351 100-175 (269)
163 3uqy_S Hydrogenase-1 small cha 97.6 1.6E-05 5.5E-10 70.6 2.0 70 281-351 104-177 (335)
164 1yqw_A Periplasmic [NIFE] hydr 97.6 1.4E-05 4.7E-10 69.2 1.4 69 280-351 102-174 (264)
165 3e4g_A ATP synthase subunit S, 97.5 4.3E-05 1.5E-09 62.3 3.3 93 16-109 52-153 (176)
166 3e4g_A ATP synthase subunit S, 97.5 3.2E-05 1.1E-09 63.0 2.1 78 49-128 62-148 (176)
167 1cc1_S Hydrogenase (small subu 97.5 3.3E-05 1.1E-09 67.5 2.3 63 280-342 114-184 (283)
168 3rfe_A Platelet glycoprotein I 97.5 0.00021 7.3E-09 55.2 6.3 55 51-109 11-68 (130)
169 4h09_A Hypothetical leucine ri 97.3 0.0008 2.7E-08 61.8 9.6 118 3-125 218-339 (379)
170 4gt6_A Cell surface protein; l 97.3 0.00088 3E-08 61.9 9.6 99 21-124 261-362 (394)
171 1pgv_A TMD-1, tropomodulin TMD 97.3 9.6E-05 3.3E-09 61.3 2.5 108 2-109 41-170 (197)
172 4fs7_A Uncharacterized protein 97.2 0.0012 4.1E-08 61.0 8.8 114 2-122 253-369 (394)
173 4gt6_A Cell surface protein; l 97.1 0.00077 2.6E-08 62.3 7.0 117 2-126 265-385 (394)
174 4h09_A Hypothetical leucine ri 97.0 0.0026 8.8E-08 58.3 9.7 104 19-126 211-317 (379)
175 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0016 5.6E-08 53.9 1.9 87 21-107 37-137 (197)
176 4fn4_A Short chain dehydrogena 95.8 0.0053 1.8E-07 53.1 3.5 79 117-199 116-194 (254)
177 4hp8_A 2-deoxy-D-gluconate 3-d 95.1 0.013 4.3E-07 50.4 3.4 80 117-200 110-190 (247)
178 4g81_D Putative hexonate dehyd 94.1 0.028 9.7E-07 48.5 3.1 79 117-199 117-196 (255)
179 4b79_A PA4098, probable short- 93.8 0.037 1.3E-06 47.3 3.4 78 118-200 108-185 (242)
180 4gkb_A 3-oxoacyl-[acyl-carrier 93.4 0.039 1.3E-06 47.7 2.9 78 118-200 114-191 (258)
181 4h15_A Short chain alcohol deh 93.1 0.051 1.7E-06 47.1 3.1 79 117-199 111-190 (261)
182 3ged_A Short-chain dehydrogena 92.1 0.11 3.7E-06 44.6 3.8 76 118-199 107-182 (247)
183 4fgs_A Probable dehydrogenase 89.5 0.1 3.5E-06 45.4 1.2 78 117-200 134-211 (273)
184 4fs3_A Enoyl-[acyl-carrier-pro 86.4 0.36 1.2E-05 41.4 2.7 61 136-200 138-198 (256)
185 3p19_A BFPVVD8, putative blue 85.0 0.69 2.4E-05 39.8 3.9 74 122-199 123-196 (266)
186 3uve_A Carveol dehydrogenase ( 83.9 0.79 2.7E-05 39.8 3.8 79 118-200 137-216 (286)
187 1zmo_A Halohydrin dehalogenase 83.7 1 3.5E-05 38.0 4.3 74 122-199 111-184 (244)
188 3rku_A Oxidoreductase YMR226C; 83.5 0.55 1.9E-05 41.0 2.6 77 118-198 148-224 (287)
189 3op4_A 3-oxoacyl-[acyl-carrier 83.5 0.6 2E-05 39.7 2.8 78 118-199 115-192 (248)
190 3h7a_A Short chain dehydrogena 83.2 0.68 2.3E-05 39.5 3.0 76 121-200 118-194 (252)
191 3gaf_A 7-alpha-hydroxysteroid 82.8 0.74 2.5E-05 39.3 3.1 77 118-198 120-196 (256)
192 3uf0_A Short-chain dehydrogena 82.7 0.83 2.8E-05 39.4 3.4 74 122-199 142-215 (273)
193 3s55_A Putative short-chain de 82.4 0.79 2.7E-05 39.6 3.1 78 118-199 131-208 (281)
194 3tzq_B Short-chain type dehydr 82.2 0.85 2.9E-05 39.3 3.3 74 122-199 123-196 (271)
195 3tsc_A Putative oxidoreductase 81.4 0.98 3.3E-05 39.0 3.4 75 121-199 136-211 (277)
196 3lf2_A Short chain oxidoreduct 81.4 0.61 2.1E-05 40.0 2.0 71 124-198 125-195 (265)
197 3uxy_A Short-chain dehydrogena 81.2 0.91 3.1E-05 39.0 3.1 77 118-198 126-202 (266)
198 3v2h_A D-beta-hydroxybutyrate 80.9 1 3.6E-05 39.0 3.4 75 121-199 139-213 (281)
199 3t7c_A Carveol dehydrogenase; 80.9 1.1 3.8E-05 39.1 3.6 74 123-200 155-229 (299)
200 3pgx_A Carveol dehydrogenase; 80.5 1.3 4.3E-05 38.3 3.8 75 121-199 140-215 (280)
201 3oid_A Enoyl-[acyl-carrier-pro 80.5 0.76 2.6E-05 39.3 2.3 75 121-199 117-191 (258)
202 4ibo_A Gluconate dehydrogenase 80.3 1 3.5E-05 38.8 3.1 74 122-199 139-212 (271)
203 4dmm_A 3-oxoacyl-[acyl-carrier 80.2 0.88 3E-05 39.2 2.6 74 122-199 142-215 (269)
204 4dqx_A Probable oxidoreductase 79.7 0.97 3.3E-05 39.1 2.8 72 123-198 138-209 (277)
205 3lt0_A Enoyl-ACP reductase; tr 79.6 1.3 4.5E-05 39.3 3.7 74 122-200 151-225 (329)
206 3osu_A 3-oxoacyl-[acyl-carrier 79.3 1 3.4E-05 38.1 2.7 76 120-199 116-191 (246)
207 3v8b_A Putative dehydrogenase, 78.9 1.2 4E-05 38.7 3.0 75 122-200 142-218 (283)
208 3gvc_A Oxidoreductase, probabl 78.6 1.1 3.8E-05 38.8 2.8 70 125-198 142-211 (277)
209 3tox_A Short chain dehydrogena 78.6 1.6 5.6E-05 37.7 3.9 75 121-199 121-196 (280)
210 2jah_A Clavulanic acid dehydro 78.2 1.6 5.5E-05 36.9 3.6 72 123-199 121-192 (247)
211 3ftp_A 3-oxoacyl-[acyl-carrier 78.2 0.82 2.8E-05 39.4 1.8 76 119-198 138-213 (270)
212 4imr_A 3-oxoacyl-(acyl-carrier 78.0 1.3 4.4E-05 38.2 3.0 73 122-198 145-217 (275)
213 3tjr_A Short chain dehydrogena 76.5 2 6.8E-05 37.6 3.9 71 124-198 146-217 (301)
214 4dry_A 3-oxoacyl-[acyl-carrier 76.5 1.6 5.6E-05 37.7 3.3 71 125-199 151-223 (281)
215 3asu_A Short-chain dehydrogena 76.5 1.3 4.4E-05 37.5 2.6 74 122-199 111-185 (248)
216 3rwb_A TPLDH, pyridoxal 4-dehy 76.4 1.2 4.2E-05 37.6 2.4 73 122-198 116-189 (247)
217 3pk0_A Short-chain dehydrogena 76.3 1.7 5.8E-05 37.1 3.3 76 119-198 121-197 (262)
218 3svt_A Short-chain type dehydr 76.3 1.3 4.3E-05 38.3 2.5 72 124-199 130-201 (281)
219 3grp_A 3-oxoacyl-(acyl carrier 76.2 1.2 4.1E-05 38.2 2.3 73 122-198 137-209 (266)
220 3tfo_A Putative 3-oxoacyl-(acy 75.9 2.2 7.6E-05 36.5 3.9 75 119-199 114-188 (264)
221 1ae1_A Tropinone reductase-I; 75.7 1.8 6E-05 37.2 3.3 73 123-199 136-208 (273)
222 1e7w_A Pteridine reductase; di 75.7 1.7 5.9E-05 37.7 3.2 72 124-199 157-234 (291)
223 3ezl_A Acetoacetyl-COA reducta 75.6 1.6 5.6E-05 36.9 3.0 77 119-199 124-200 (256)
224 3nyw_A Putative oxidoreductase 75.5 1.5 5.2E-05 37.2 2.7 72 123-198 123-194 (250)
225 4egf_A L-xylulose reductase; s 75.5 1.7 5.8E-05 37.2 3.1 71 124-198 136-207 (266)
226 4fc7_A Peroxisomal 2,4-dienoyl 75.4 1.2 4.3E-05 38.3 2.2 71 124-198 143-213 (277)
227 3t4x_A Oxidoreductase, short c 75.4 0.99 3.4E-05 38.7 1.5 72 123-198 122-193 (267)
228 3kzv_A Uncharacterized oxidore 75.3 2.7 9.3E-05 35.6 4.3 72 122-200 115-186 (254)
229 3lyl_A 3-oxoacyl-(acyl-carrier 75.0 1.8 6.1E-05 36.4 3.0 74 122-199 118-191 (247)
230 3f1l_A Uncharacterized oxidore 75.0 2 6.7E-05 36.4 3.3 74 120-198 127-200 (252)
231 3rkr_A Short chain oxidoreduct 74.5 2.1 7.2E-05 36.4 3.4 72 124-199 145-216 (262)
232 2ew8_A (S)-1-phenylethanol deh 74.4 2 6.8E-05 36.3 3.2 71 125-199 121-191 (249)
233 3ucx_A Short chain dehydrogena 74.3 2.2 7.5E-05 36.4 3.5 71 123-198 126-196 (264)
234 3imf_A Short chain dehydrogena 74.2 3.6 0.00012 34.8 4.8 69 126-198 123-193 (257)
235 4dyv_A Short-chain dehydrogena 74.1 1.9 6.5E-05 37.1 3.0 72 124-199 141-214 (272)
236 3gk3_A Acetoacetyl-COA reducta 74.1 1.7 5.7E-05 37.3 2.6 74 123-200 140-213 (269)
237 3k31_A Enoyl-(acyl-carrier-pro 74.1 2.7 9.4E-05 36.6 4.1 66 128-199 154-219 (296)
238 2et6_A (3R)-hydroxyacyl-COA de 73.9 1.5 5.2E-05 42.6 2.5 66 125-194 434-499 (604)
239 4e6p_A Probable sorbitol dehyd 73.4 2.5 8.5E-05 35.9 3.6 72 124-199 120-192 (259)
240 3oec_A Carveol dehydrogenase ( 73.4 2 6.9E-05 37.9 3.1 71 124-198 173-244 (317)
241 3a28_C L-2.3-butanediol dehydr 73.3 2.3 7.8E-05 36.1 3.3 71 124-198 119-190 (258)
242 1iy8_A Levodione reductase; ox 73.2 2.1 7E-05 36.6 3.0 68 127-198 134-201 (267)
243 1jtv_A 17 beta-hydroxysteroid 73.1 2 7E-05 38.1 3.0 74 122-199 119-192 (327)
244 3sju_A Keto reductase; short-c 73.1 1.7 5.7E-05 37.6 2.4 71 124-198 139-211 (279)
245 1x1t_A D(-)-3-hydroxybutyrate 72.8 2.2 7.6E-05 36.2 3.1 72 124-199 121-192 (260)
246 3f9i_A 3-oxoacyl-[acyl-carrier 72.7 2.4 8E-05 35.7 3.2 71 125-199 123-193 (249)
247 1zem_A Xylitol dehydrogenase; 72.6 1.8 6.3E-05 36.8 2.5 72 123-198 122-193 (262)
248 3rih_A Short chain dehydrogena 72.6 2.5 8.7E-05 36.8 3.5 72 123-198 156-228 (293)
249 2fwm_X 2,3-dihydro-2,3-dihydro 72.5 2.5 8.7E-05 35.6 3.4 73 123-199 111-183 (250)
250 1vl8_A Gluconate 5-dehydrogena 71.8 2.7 9.1E-05 36.0 3.4 70 126-199 139-209 (267)
251 3ioy_A Short-chain dehydrogena 71.6 3.2 0.00011 36.6 4.0 70 127-200 128-203 (319)
252 3vtz_A Glucose 1-dehydrogenase 71.5 2.5 8.6E-05 36.2 3.2 74 120-198 115-188 (269)
253 4da9_A Short-chain dehydrogena 71.0 1.8 6.1E-05 37.4 2.1 73 123-199 146-221 (280)
254 2uvd_A 3-oxoacyl-(acyl-carrier 70.9 2.1 7.2E-05 36.0 2.5 69 127-199 123-191 (246)
255 3tl3_A Short-chain type dehydr 70.6 1 3.5E-05 38.3 0.5 62 135-200 140-201 (257)
256 3tpc_A Short chain alcohol deh 70.6 1.9 6.6E-05 36.5 2.2 73 124-200 123-201 (257)
257 2et6_A (3R)-hydroxyacyl-COA de 70.3 1.6 5.6E-05 42.4 1.9 73 117-193 122-194 (604)
258 3gem_A Short chain dehydrogena 70.2 3.2 0.00011 35.4 3.5 69 125-198 137-205 (260)
259 1hdc_A 3-alpha, 20 beta-hydrox 70.2 2.7 9.3E-05 35.6 3.0 68 127-198 120-187 (254)
260 3cxt_A Dehydrogenase with diff 70.1 3.2 0.00011 36.0 3.6 69 127-199 152-220 (291)
261 2zat_A Dehydrogenase/reductase 70.1 3.3 0.00011 35.1 3.6 69 126-198 132-200 (260)
262 1o5i_A 3-oxoacyl-(acyl carrier 70.1 3.3 0.00011 34.9 3.6 69 127-199 122-190 (249)
263 2b4q_A Rhamnolipids biosynthes 69.6 4.3 0.00015 34.9 4.3 69 126-198 145-218 (276)
264 3sx2_A Putative 3-ketoacyl-(ac 69.3 2.1 7.1E-05 36.8 2.1 74 123-200 135-213 (278)
265 1zmt_A Haloalcohol dehalogenas 69.3 3 0.0001 35.3 3.2 69 123-195 110-178 (254)
266 2qhx_A Pteridine reductase 1; 69.3 3.3 0.00011 36.7 3.5 69 127-199 197-271 (328)
267 2z1n_A Dehydrogenase; reductas 69.1 3 0.0001 35.4 3.1 71 125-199 124-194 (260)
268 4iin_A 3-ketoacyl-acyl carrier 68.9 2.4 8.2E-05 36.3 2.5 71 125-199 146-216 (271)
269 2d1y_A Hypothetical protein TT 68.1 3.2 0.00011 35.2 3.1 70 125-198 116-185 (256)
270 3grk_A Enoyl-(acyl-carrier-pro 68.1 2.7 9.3E-05 36.5 2.7 59 137-199 162-220 (293)
271 1uls_A Putative 3-oxoacyl-acyl 67.8 3.2 0.00011 34.9 3.0 68 127-199 118-185 (245)
272 2x9g_A PTR1, pteridine reducta 67.4 3 0.0001 36.0 2.8 59 137-199 173-231 (288)
273 1geg_A Acetoin reductase; SDR 67.3 3.3 0.00011 35.0 3.0 69 126-198 119-188 (256)
274 3dii_A Short-chain dehydrogena 67.3 4.7 0.00016 33.9 3.9 67 127-199 116-182 (247)
275 2ekp_A 2-deoxy-D-gluconate 3-d 67.3 3.8 0.00013 34.2 3.4 71 124-198 108-180 (239)
276 3m1a_A Putative dehydrogenase; 67.1 4.1 0.00014 34.9 3.6 71 125-199 118-188 (281)
277 1uzm_A 3-oxoacyl-[acyl-carrier 67.0 2.8 9.6E-05 35.3 2.5 69 126-198 121-189 (247)
278 3i1j_A Oxidoreductase, short c 67.0 3.1 0.00011 34.8 2.8 74 123-199 132-205 (247)
279 3u9l_A 3-oxoacyl-[acyl-carrier 67.0 3.7 0.00013 36.3 3.4 74 120-197 121-195 (324)
280 3ai3_A NADPH-sorbose reductase 66.9 3.4 0.00012 35.0 3.1 69 126-198 125-193 (263)
281 3e03_A Short chain dehydrogena 66.9 1.7 5.9E-05 37.3 1.1 78 117-198 121-201 (274)
282 2ae2_A Protein (tropinone redu 66.4 3.3 0.00011 35.1 2.9 71 124-198 125-195 (260)
283 1xkq_A Short-chain reductase f 65.6 5 0.00017 34.4 3.9 72 122-198 126-198 (280)
284 4e4y_A Short chain dehydrogena 65.4 2.7 9.4E-05 35.2 2.1 66 127-198 111-176 (244)
285 3nrc_A Enoyl-[acyl-carrier-pro 65.4 4 0.00014 35.1 3.2 66 129-199 151-216 (280)
286 3n74_A 3-ketoacyl-(acyl-carrie 65.0 3.7 0.00013 34.7 2.8 72 124-199 122-197 (261)
287 2q2v_A Beta-D-hydroxybutyrate 64.5 2.9 9.9E-05 35.4 2.1 69 126-198 119-187 (255)
288 2nwq_A Probable short-chain de 64.2 2.2 7.5E-05 36.7 1.2 71 125-199 137-208 (272)
289 1nff_A Putative oxidoreductase 64.0 4.8 0.00016 34.2 3.4 69 127-199 122-190 (260)
290 3o38_A Short chain dehydrogena 63.5 4.6 0.00016 34.2 3.2 70 126-199 141-211 (266)
291 2ptg_A Enoyl-acyl carrier redu 63.3 4.4 0.00015 35.6 3.1 69 126-199 175-244 (319)
292 1xhl_A Short-chain dehydrogena 63.2 5.4 0.00018 34.7 3.6 67 127-198 149-216 (297)
293 1spx_A Short-chain reductase f 63.2 5.6 0.00019 34.0 3.7 68 127-199 131-199 (278)
294 3r3s_A Oxidoreductase; structu 62.7 4.6 0.00016 35.1 3.1 65 128-198 171-235 (294)
295 1oaa_A Sepiapterin reductase; 62.7 2.2 7.5E-05 36.2 1.0 68 125-198 134-203 (259)
296 2qq5_A DHRS1, dehydrogenase/re 62.6 8.1 0.00028 32.6 4.6 70 125-199 129-198 (260)
297 2ag5_A DHRS6, dehydrogenase/re 62.5 4 0.00014 34.2 2.6 72 123-198 111-183 (246)
298 3oig_A Enoyl-[acyl-carrier-pro 62.3 5 0.00017 34.0 3.2 59 137-199 140-198 (266)
299 3icc_A Putative 3-oxoacyl-(acy 62.1 4.5 0.00016 33.9 2.9 59 137-199 140-198 (255)
300 3is3_A 17BETA-hydroxysteroid d 61.9 4.6 0.00016 34.5 2.9 66 128-199 138-204 (270)
301 3sc4_A Short chain dehydrogena 61.8 3.7 0.00013 35.4 2.3 73 121-197 128-202 (285)
302 4eso_A Putative oxidoreductase 61.8 2.9 9.9E-05 35.5 1.5 59 137-199 131-189 (255)
303 3ppi_A 3-hydroxyacyl-COA dehyd 61.2 5.5 0.00019 34.1 3.3 61 135-199 164-224 (281)
304 1d7o_A Enoyl-[acyl-carrier pro 60.9 7.9 0.00027 33.4 4.3 68 127-199 162-230 (297)
305 3zv4_A CIS-2,3-dihydrobiphenyl 60.6 5.8 0.0002 34.1 3.3 71 123-199 121-191 (281)
306 3e9n_A Putative short-chain de 60.5 4 0.00014 34.2 2.2 68 127-199 116-183 (245)
307 1mxh_A Pteridine reductase 2; 59.6 5 0.00017 34.2 2.7 57 138-198 162-218 (276)
308 3l6e_A Oxidoreductase, short-c 59.4 2.6 8.9E-05 35.3 0.8 67 128-199 119-185 (235)
309 3i4f_A 3-oxoacyl-[acyl-carrier 59.3 7.1 0.00024 32.9 3.7 76 120-199 121-198 (264)
310 3ak4_A NADH-dependent quinucli 59.3 6.3 0.00022 33.3 3.3 68 127-198 127-195 (263)
311 2p91_A Enoyl-[acyl-carrier-pro 58.9 7.9 0.00027 33.2 3.9 66 128-198 145-210 (285)
312 1sby_A Alcohol dehydrogenase; 58.8 8.1 0.00028 32.4 3.9 67 128-198 118-187 (254)
313 4iiu_A 3-oxoacyl-[acyl-carrier 58.0 5.3 0.00018 34.0 2.6 68 129-200 147-215 (267)
314 2rhc_B Actinorhodin polyketide 56.7 4.4 0.00015 34.8 1.8 68 127-198 140-209 (277)
315 2o2s_A Enoyl-acyl carrier redu 56.5 6.8 0.00023 34.3 3.1 70 124-198 160-230 (315)
316 2bd0_A Sepiapterin reductase; 54.9 8.4 0.00029 32.0 3.3 69 127-199 127-195 (244)
317 3u0b_A Oxidoreductase, short c 53.9 4.9 0.00017 37.5 1.8 67 129-199 331-397 (454)
318 3kvo_A Hydroxysteroid dehydrog 53.8 7.9 0.00027 34.5 3.1 70 123-197 166-238 (346)
319 3ek2_A Enoyl-(acyl-carrier-pro 53.8 5.7 0.00019 33.6 2.1 59 137-199 146-204 (271)
320 3guy_A Short-chain dehydrogena 52.9 5.4 0.00018 33.0 1.7 67 128-199 114-180 (230)
321 2dtx_A Glucose 1-dehydrogenase 52.7 7.9 0.00027 32.9 2.8 68 125-197 113-180 (264)
322 2nm0_A Probable 3-oxacyl-(acyl 52.4 2.8 9.5E-05 35.6 -0.2 69 127-199 128-196 (253)
323 3uce_A Dehydrogenase; rossmann 52.2 6.4 0.00022 32.4 2.1 57 137-199 109-165 (223)
324 2ehd_A Oxidoreductase, oxidore 51.8 10 0.00035 31.2 3.3 67 128-198 120-186 (234)
325 3oml_A GH14720P, peroxisomal m 51.1 5.3 0.00018 38.9 1.5 69 123-195 139-207 (613)
326 2cfc_A 2-(R)-hydroxypropyl-COM 50.2 12 0.00042 31.0 3.6 68 127-198 124-191 (250)
327 3s8m_A Enoyl-ACP reductase; ro 50.0 3.2 0.00011 38.2 -0.2 60 137-200 238-299 (422)
328 3r1i_A Short-chain type dehydr 49.6 13 0.00043 31.8 3.6 75 122-200 145-222 (276)
329 3ijr_A Oxidoreductase, short c 49.6 6.7 0.00023 33.9 1.8 59 137-199 175-233 (291)
330 1yde_A Retinal dehydrogenase/r 49.4 7.1 0.00024 33.3 2.0 66 128-198 125-190 (270)
331 1hxh_A 3BETA/17BETA-hydroxyste 49.4 13 0.00045 31.1 3.7 69 127-198 121-189 (253)
332 3gdg_A Probable NADP-dependent 49.3 11 0.00038 31.8 3.2 71 124-199 139-211 (267)
333 3v2g_A 3-oxoacyl-[acyl-carrier 49.2 10 0.00035 32.4 2.9 59 137-199 158-217 (271)
334 2pd4_A Enoyl-[acyl-carrier-pro 48.8 7.4 0.00025 33.2 2.0 59 137-199 137-195 (275)
335 4eue_A Putative reductase CA_C 48.3 14 0.00047 34.0 3.8 60 136-199 236-298 (418)
336 3un1_A Probable oxidoreductase 47.9 9.3 0.00032 32.3 2.5 74 122-199 132-207 (260)
337 2o23_A HADH2 protein; HSD17B10 47.9 8.4 0.00029 32.4 2.2 60 136-199 148-207 (265)
338 1fjh_A 3alpha-hydroxysteroid d 47.8 8.2 0.00028 32.3 2.1 69 127-199 96-192 (257)
339 3d3w_A L-xylulose reductase; u 47.0 15 0.0005 30.4 3.6 66 129-198 119-185 (244)
340 3ksu_A 3-oxoacyl-acyl carrier 46.1 3.7 0.00013 34.9 -0.4 60 136-199 139-198 (262)
341 1qsg_A Enoyl-[acyl-carrier-pro 44.7 8.7 0.0003 32.5 1.8 58 137-198 141-198 (265)
342 1gee_A Glucose 1-dehydrogenase 43.9 18 0.00061 30.2 3.7 66 129-198 128-194 (261)
343 2bgk_A Rhizome secoisolaricire 42.9 18 0.00063 30.4 3.6 68 128-199 136-204 (278)
344 1edo_A Beta-keto acyl carrier 42.5 12 0.00041 31.0 2.3 67 128-198 121-187 (244)
345 3edm_A Short chain dehydrogena 41.9 8 0.00027 32.7 1.1 66 127-199 128-194 (259)
346 1xq1_A Putative tropinone redu 41.8 14 0.00049 31.0 2.8 67 129-199 135-201 (266)
347 2wyu_A Enoyl-[acyl carrier pro 41.7 9.3 0.00032 32.3 1.5 58 137-198 139-196 (261)
348 3u5t_A 3-oxoacyl-[acyl-carrier 41.4 6.4 0.00022 33.6 0.4 59 137-199 154-212 (267)
349 3qiv_A Short-chain dehydrogena 40.2 14 0.00049 30.7 2.5 68 125-199 128-195 (253)
350 3qlj_A Short chain dehydrogena 39.9 8.9 0.00031 33.6 1.1 56 138-198 172-227 (322)
351 2c07_A 3-oxoacyl-(acyl-carrier 39.6 15 0.00052 31.4 2.5 66 129-198 164-229 (285)
352 2hq1_A Glucose/ribitol dehydro 39.3 17 0.00059 30.0 2.8 66 128-197 125-190 (247)
353 1g0o_A Trihydroxynaphthalene r 39.2 18 0.00062 30.8 3.0 59 136-198 155-214 (283)
354 3zu3_A Putative reductase YPO4 38.3 16 0.00056 33.3 2.6 59 137-199 223-284 (405)
355 3l77_A Short-chain alcohol deh 37.6 36 0.0012 27.8 4.5 68 125-199 119-186 (235)
356 3o26_A Salutaridine reductase; 37.5 15 0.0005 31.6 2.1 67 127-199 162-271 (311)
357 1gz6_A Estradiol 17 beta-dehyd 37.3 10 0.00035 33.4 1.0 65 127-195 133-197 (319)
358 2a4k_A 3-oxoacyl-[acyl carrier 37.2 6.3 0.00022 33.5 -0.3 64 129-199 123-186 (263)
359 3awd_A GOX2181, putative polyo 36.9 26 0.0009 29.1 3.6 66 129-198 134-201 (260)
360 2h7i_A Enoyl-[acyl-carrier-pro 36.7 16 0.00055 30.9 2.2 65 127-198 133-197 (269)
361 2wsb_A Galactitol dehydrogenas 36.4 22 0.00076 29.4 3.1 67 128-198 127-195 (254)
362 2pd6_A Estradiol 17-beta-dehyd 36.0 19 0.00066 30.0 2.6 67 128-198 134-201 (264)
363 2pnf_A 3-oxoacyl-[acyl-carrier 35.6 18 0.00062 29.8 2.3 68 127-198 126-193 (248)
364 4e3z_A Putative oxidoreductase 35.2 17 0.00057 30.8 2.1 60 136-199 158-218 (272)
365 1zk4_A R-specific alcohol dehy 34.6 21 0.00073 29.5 2.6 68 129-198 125-193 (251)
366 1fmc_A 7 alpha-hydroxysteroid 34.0 31 0.0011 28.5 3.6 65 129-197 130-194 (255)
367 1yo6_A Putative carbonyl reduc 33.7 27 0.00093 28.6 3.2 59 137-199 144-209 (250)
368 2gdz_A NAD+-dependent 15-hydro 33.6 24 0.00081 29.7 2.8 66 129-198 121-191 (267)
369 2ph3_A 3-oxoacyl-[acyl carrier 33.5 18 0.00063 29.7 2.0 65 129-197 123-187 (245)
370 3pxx_A Carveol dehydrogenase; 33.3 7.3 0.00025 33.3 -0.6 67 128-200 139-216 (287)
371 1cyd_A Carbonyl reductase; sho 32.8 27 0.00094 28.6 3.0 65 129-197 119-184 (244)
372 3ctm_A Carbonyl reductase; alc 32.6 22 0.00076 30.1 2.4 66 129-199 156-223 (279)
373 1xu9_A Corticosteroid 11-beta- 29.9 48 0.0016 28.1 4.2 67 129-198 149-215 (286)
374 1sny_A Sniffer CG10964-PA; alp 28.6 54 0.0019 27.2 4.2 59 137-199 165-226 (267)
375 1xg5_A ARPG836; short chain de 27.0 41 0.0014 28.4 3.2 68 129-198 154-225 (279)
376 2lz0_A Uncharacterized protein 26.9 97 0.0033 21.7 4.7 38 43-81 15-53 (100)
377 1yb1_A 17-beta-hydroxysteroid 26.0 16 0.00054 31.0 0.3 71 128-199 150-220 (272)
378 1yxm_A Pecra, peroxisomal tran 23.9 39 0.0013 28.9 2.5 65 129-198 143-207 (303)
379 1dhr_A Dihydropteridine reduct 22.5 13 0.00043 30.9 -1.0 60 137-198 126-185 (241)
380 1w6u_A 2,4-dienoyl-COA reducta 22.2 39 0.0013 28.8 2.1 66 129-198 147-213 (302)
381 1uay_A Type II 3-hydroxyacyl-C 22.2 36 0.0012 27.7 1.8 57 138-198 128-184 (242)
382 1ooe_A Dihydropteridine reduct 21.2 18 0.00061 29.8 -0.3 60 137-198 122-181 (236)
383 3afn_B Carbonyl reductase; alp 20.2 37 0.0013 28.0 1.5 57 138-198 143-200 (258)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=1e-32 Score=280.18 Aligned_cols=313 Identities=24% Similarity=0.316 Sum_probs=195.0
Q ss_pred CCccEEEeeCCcCc-ccCccccCCCCCCEEEccCCcCc-ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 78 (352)
++|++|++++|+++ .+|..++++++|++|++++|+++ .+|..++++++|+.|++++|+++ .+|..++.+++|+.|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 34666666666666 56666666666666666666666 55666666666666666666666 55666666666666666
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcccHHHHHHhcc------hhhHhh-cCceEeecccccccc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILETFL------PDMMEK-NRGHIVGISSMAGIV 150 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L~~L~l~~~------p~~~~~-~~g~i~~iss~~~l~ 150 (352)
++|+++| .+|..++++++|++|++++|+++ .+|.+++++++|++++++.. |..+.. ......+++.+...+
T Consensus 474 ~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 474 DFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 6666665 56666666666666666666666 56666666666666655431 111111 111122222211111
Q ss_pred CCCCcccccc-------ch--------h--------------hhhhhhHHhHHHHH--HHHhcCCceeecccCccc-ccC
Q psy5270 151 GLPNLVPYCA-------SK--------F--------------AVRGLMEALAEELR--EDARNSKIKFTSIFPFMV-DTG 198 (352)
Q Consensus 151 ~lp~l~~~~~-------s~--------~--------------~l~~~~~~l~~~l~--~~~~~~~n~~~g~~P~~~-~~~ 198 (352)
.+|....... .. + .+.+........+. ....+..+.+.|.+|..+ ...
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 2221110000 00 0 00000000000000 011234467777776544 456
Q ss_pred CccCcccccccCC-CcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccc
Q psy5270 199 LCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKN 276 (352)
Q Consensus 199 ~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~ 276 (352)
.++.+++++|+++ .+|.+++.++.| +.|||++|+++| .||..|+++++|++|||++|+++ .||.+++++++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L------~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYL------FILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTC------CEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred cccEEECcCCcccccCCHHHhccccC------CEEeCcCCccCC-CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 7788999999999 999999999888 699999999999 89999999999999999999999 99999999999
Q ss_pred cccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCC
Q psy5270 277 LQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT 325 (352)
Q Consensus 277 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~ 325 (352)
|++++..++... |..+..+.+-.+....+.|++.++... ++.|++.
T Consensus 706 L~~L~ls~N~l~-g~iP~~~~~~~~~~~~~~gN~~Lcg~~--l~~C~~~ 751 (768)
T 3rgz_A 706 LTEIDLSNNNLS-GPIPEMGQFETFPPAKFLNNPGLCGYP--LPRCDPS 751 (768)
T ss_dssp CSEEECCSSEEE-EECCSSSSGGGSCGGGGCSCTEEESTT--SCCCCSC
T ss_pred CCEEECcCCccc-ccCCCchhhccCCHHHhcCCchhcCCC--CcCCCCC
Confidence 999977766553 445555555556666788888777322 3357643
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.3e-32 Score=252.39 Aligned_cols=215 Identities=23% Similarity=0.228 Sum_probs=192.0
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++++.|+|++|.++.+|++++++++|++|+|++|.++.+|..++++++|++|++++|+++.+|..++++++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccc---------CccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCC
Q psy5270 82 NLNEQSLPGNFFM---------LETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGL 152 (352)
Q Consensus 82 ~l~g~~~p~~~~~---------l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~l 152 (352)
++.+ .+|..++. +++|++|++++|+++.+|..++++++|+.|+++
T Consensus 161 ~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~------------------------- 214 (328)
T 4fcg_A 161 PELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR------------------------- 214 (328)
T ss_dssp TTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEE-------------------------
T ss_pred CCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEcc-------------------------
Confidence 9888 79998765 999999999999999999999988887765443
Q ss_pred CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCC-CcccCCCCCcccchhhhhhh
Q psy5270 153 PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTI 231 (352)
Q Consensus 153 p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~L~~ 231 (352)
+|.++++.+.......++.+++++|++. .+|..++.++.| +.
T Consensus 215 -------------------------------~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L------~~ 257 (328)
T 4fcg_A 215 -------------------------------NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL------KR 257 (328)
T ss_dssp -------------------------------SSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC------CE
T ss_pred -------------------------------CCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC------CE
Confidence 3334443333345567788899998877 889999988888 79
Q ss_pred hhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccc
Q psy5270 232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIM 280 (352)
Q Consensus 232 L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l 280 (352)
|++++|++.+ .+|..++.+++|++|+|++|++. .+|++++++++|+.+
T Consensus 258 L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 258 LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp EECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred EECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 9999999998 89999999999999999999988 999999999999876
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.7e-32 Score=278.52 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=66.0
Q ss_pred hhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCce------eeeccccccCCcccc
Q psy5270 228 FTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRW------VISMGSCANGGGYYH 300 (352)
Q Consensus 228 ~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~------~~~~~~~~~~~~~~~ 300 (352)
.++.|||++|+++| .+|.+|+++++|+.|+|++|+++ .||.+++++++|++|+...+ |...+..... ..++
T Consensus 633 ~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L-~~L~ 710 (768)
T 3rgz_A 633 SMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML-TEID 710 (768)
T ss_dssp CCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC-SEEE
T ss_pred cccEEECcCCcccc-cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-CEEE
Confidence 35799999999999 89999999999999999999999 99999999999999965444 3334444443 3688
Q ss_pred cccccccCC
Q psy5270 301 YSYSVVRGC 309 (352)
Q Consensus 301 ~~~~~~~~~ 309 (352)
+++|.+.|.
T Consensus 711 ls~N~l~g~ 719 (768)
T 3rgz_A 711 LSNNNLSGP 719 (768)
T ss_dssp CCSSEEEEE
T ss_pred CcCCccccc
Confidence 889888763
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.7e-30 Score=236.63 Aligned_cols=242 Identities=22% Similarity=0.293 Sum_probs=192.8
Q ss_pred CCccEEEeeCCcCc---ccCccccCCCCCCEEEccC-CcCc-ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCE
Q psy5270 2 LYITRITLSHNKLK---EIPPGLANLVNLEILTLFN-NQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEV 75 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~---~ip~~l~~l~~L~~L~L~~-N~l~-~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 75 (352)
.+++.|+|++|.++ .+|+.++++++|++|++++ |.+. .+|..++++++|++|++++|+++ .+|..|+++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47899999999998 5899999999999999995 9998 88999999999999999999999 88999999999999
Q ss_pred EEccCCCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcc-cHHHHHHhcchhhHhhcCceEeeccccccccCCC
Q psy5270 76 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK-NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP 153 (352)
Q Consensus 76 L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~-~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp 153 (352)
|++++|.+++ .+|..++++++|++|++++|+++ .+|..++++. +|+.++++.. .+.+.. ...+..+.
T Consensus 130 L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N---------~l~~~~-~~~~~~l~ 198 (313)
T 1ogq_A 130 LDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN---------RLTGKI-PPTFANLN 198 (313)
T ss_dssp EECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS---------EEEEEC-CGGGGGCC
T ss_pred EeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC---------eeeccC-ChHHhCCc
Confidence 9999999998 79999999999999999999999 8999999987 7777766541 111100 01111111
Q ss_pred CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCCCCCcccchhhhhhhh
Q psy5270 154 NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232 (352)
Q Consensus 154 ~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L 232 (352)
+ ..+++++|.+++..|..+ ....++.+++++|+++..+..++.++.| +.|
T Consensus 199 -L----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L------~~L 249 (313)
T 1ogq_A 199 -L----------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL------NGL 249 (313)
T ss_dssp -C----------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTC------CEE
T ss_pred -c----------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCC------CEE
Confidence 1 123466777777766544 4567788888888888544446666666 688
Q ss_pred hhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCce
Q psy5270 233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRW 285 (352)
Q Consensus 233 ~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~ 285 (352)
++++|+++| .+|..+..+++|++|+|++|+++ .+|.. +++++|+.+....+
T Consensus 250 ~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 250 DLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp ECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred ECcCCcccC-cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 999999987 78888888999999999999988 77776 77888877643333
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3.4e-30 Score=234.71 Aligned_cols=223 Identities=23% Similarity=0.231 Sum_probs=184.3
Q ss_pred CCCCEEEccCCcCc---ccccccCCCCCCcEEEccC-CCCC-ccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCc
Q psy5270 25 VNLEILTLFNNQIE---TLPTSLSSLPKLRILNLGM-NRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLR 99 (352)
Q Consensus 25 ~~L~~L~L~~N~l~---~ip~~l~~L~~L~~L~L~~-N~l~-~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~ 99 (352)
.++++|+|++|.++ .+|+.++++++|++|++++ |+++ .+|..|+++++|++|++++|++++ .+|..|+++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCC
Confidence 57999999999998 5899999999999999995 9998 889999999999999999999998 7999999999999
Q ss_pred EEEccCCccc-cchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCC-CccccccchhhhhhhhHHhHHHHH
Q psy5270 100 ALYLGDNDFE-VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP-NLVPYCASKFAVRGLMEALAEELR 177 (352)
Q Consensus 100 ~L~l~~N~l~-~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp-~l~~~~~s~~~l~~~~~~l~~~l~ 177 (352)
+|++++|+++ .+|..++++++|++++++... ..+.++ ..+..++ .+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-----l~~~~p-----~~l~~l~~~L~--------------------- 177 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-----ISGAIP-----DSYGSFSKLFT--------------------- 177 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-----CEEECC-----GGGGCCCTTCC---------------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-----ccCcCC-----HHHhhhhhcCc---------------------
Confidence 9999999999 799999999999988776511 111111 1222222 222
Q ss_pred HHHhcCCceeecccCcccccCCccCcccccccCC-CcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHh
Q psy5270 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRA 256 (352)
Q Consensus 178 ~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~ 256 (352)
.+++++|++++..|..+..-.++.+++++|+++ .+|..++.++.| +.|++++|++++ .+|. +..+++|++
T Consensus 178 -~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L------~~L~L~~N~l~~-~~~~-~~~l~~L~~ 248 (313)
T 1ogq_A 178 -SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT------QKIHLAKNSLAF-DLGK-VGLSKNLNG 248 (313)
T ss_dssp -EEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCC------SEEECCSSEECC-BGGG-CCCCTTCCE
T ss_pred -EEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCC------CEEECCCCceee-ecCc-ccccCCCCE
Confidence 234667888888887665444889999999998 778888888888 799999999997 5554 889999999
Q ss_pred hhCCCCcce-ecchhhhcccccccccCCceeee
Q psy5270 257 LYLGDNDFE-VLPAEIGNLKNLQIMLEPRWVIS 288 (352)
Q Consensus 257 L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~~~~ 288 (352)
|+|++|+++ .+|..++++++|+.+....+.+.
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 999999999 99999999999999966665543
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2e-30 Score=258.00 Aligned_cols=275 Identities=19% Similarity=0.254 Sum_probs=196.4
Q ss_pred CCCccEEEeeCCcCc-ccCccccCCCCCCEEEccCCc-Cc--ccccccCCC------CCCcEEEccCCCCCcccc--ccC
Q psy5270 1 MLYITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQ-IE--TLPTSLSSL------PKLRILNLGMNRLSSLPR--GFG 68 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~-l~--~ip~~l~~L------~~L~~L~L~~N~l~~ip~--~~~ 68 (352)
+++|++|++++|++. .+|+.|+++++|++|++++|+ ++ .+|..++++ ++|++|++++|+++.+|. .++
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~ 327 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc
Confidence 578999999999998 899999999999999999998 88 489988887 999999999999999999 899
Q ss_pred CCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCccc-HHHHHHhc-----chhhHhhc---Cce
Q psy5270 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN-LQIILETF-----LPDMMEKN---RGH 139 (352)
Q Consensus 69 ~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~-L~~L~l~~-----~p~~~~~~---~g~ 139 (352)
++++|+.|++++|+++| .+| .|+++++|++|++++|+++.+|..++++++ |+.|+++. +|...... ...
T Consensus 328 ~l~~L~~L~L~~N~l~g-~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEG-KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp TCTTCCEEECCSCCCEE-ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred cCCCCCEEeCcCCcCcc-chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 99999999999999998 799 999999999999999999999999999998 99888765 22221111 122
Q ss_pred Eeecccccc-------cc-------CCCCccccccchhhhhhhhHHhHHHHH--HHHhcCCceeecccCcccccC-----
Q psy5270 140 IVGISSMAG-------IV-------GLPNLVPYCASKFAVRGLMEALAEELR--EDARNSKIKFTSIFPFMVDTG----- 198 (352)
Q Consensus 140 i~~iss~~~-------l~-------~lp~l~~~~~s~~~l~~~~~~l~~~l~--~~~~~~~n~~~g~~P~~~~~~----- 198 (352)
...++.+.- +. ..+.+.....+.+.+..+.......+. ..+++++|+++.+.+......
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 222222111 11 222333444444444433222221111 233456666664333322211
Q ss_pred ---CccCcccccccCCCcccCCC--CCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhC------CCCcce-e
Q psy5270 199 ---LCKNPKIKMNRLSSLPRGFG--AFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYL------GDNDFE-V 266 (352)
Q Consensus 199 ---~l~~l~l~~n~l~~ip~~~~--~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~L------s~N~l~-~ 266 (352)
.++.+++++|+++.+|..+. .++.| +.|++++|++++ +|..++.+++|++|+| ++|++. .
T Consensus 486 ~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L------~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYL------VGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp TGGGCCEEECCSSCCCBCCGGGSTTTCTTC------CEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred ccCCccEEECcCCcCCccChhhhhccCCCc------CEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 56667777777777777665 66666 577777777774 6777777777777777 445666 7
Q ss_pred cchhhhcccccccccCCce
Q psy5270 267 LPAEIGNLKNLQIMLEPRW 285 (352)
Q Consensus 267 iP~~l~~l~~L~~l~~~~~ 285 (352)
+|.+++++++|+.|....+
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CCTTGGGCSSCCEEECCSS
T ss_pred ChHHHhcCCCCCEEECCCC
Confidence 7777777777777744433
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5.2e-30 Score=255.01 Aligned_cols=260 Identities=17% Similarity=0.196 Sum_probs=175.2
Q ss_pred CccEEEeeCCcCc-ccCccccCCCCCCEEEccCCcC--------------------------------------------
Q psy5270 3 YITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQI-------------------------------------------- 37 (352)
Q Consensus 3 ~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l-------------------------------------------- 37 (352)
+++.|+|++|.++ .+|+++++|++|++|+|++|.+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 6889999999999 8999999999999999998843
Q ss_pred ----------------------------------cccccccCCCCCCcEEEccCCCCCc------------------ccc
Q psy5270 38 ----------------------------------ETLPTSLSSLPKLRILNLGMNRLSS------------------LPR 65 (352)
Q Consensus 38 ----------------------------------~~ip~~l~~L~~L~~L~L~~N~l~~------------------ip~ 65 (352)
+.||++++++++|++|+|++|+++. +|+
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 3588889999999999999999996 999
Q ss_pred ccC--CCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCc-ccc--chhhccCc------ccHHHHHHhcchhhHh
Q psy5270 66 GFG--AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEV--LPAEIGNL------KNLQIILETFLPDMME 134 (352)
Q Consensus 66 ~~~--~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~-l~~--ip~~~~nl------~~L~~L~l~~~p~~~~ 134 (352)
+++ ++++|++|++++|++.| .+|..|+++++|++|++++|+ ++. +|..++++ ++|+.|+++...
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~---- 316 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN---- 316 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC----
T ss_pred hhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc----
Confidence 999 99999999999999998 899999999999999999998 884 89988876 777777665410
Q ss_pred hcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHH--HHHHhcCCceeecccCcccccCC-ccCcccccccCC
Q psy5270 135 KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL--REDARNSKIKFTSIFPFMVDTGL-CKNPKIKMNRLS 211 (352)
Q Consensus 135 ~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l--~~~~~~~~n~~~g~~P~~~~~~~-l~~l~l~~n~l~ 211 (352)
+..+.....+..++.+.....+.+.+.+.++.+ ..+ ...+++++|+++.+......... ++.+++++|+++
T Consensus 317 -----l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 317 -----LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp -----CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred -----CCccCchhhhccCCCCCEEeCcCCcCccchhhh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc
Confidence 001110002333444433333333333111100 000 02334566666643333334555 777777888877
Q ss_pred CcccCCCCCc--ccchhhhhhhhhhccccccccCCCchhh-------hhHHhHhhhCCCCcceecchhhh-cccccccc
Q psy5270 212 SLPRGFGAFP--VLEAFSFTTILDLTYNNLNEQSLPGNFF-------MLETLRALYLGDNDFEVLPAEIG-NLKNLQIM 280 (352)
Q Consensus 212 ~ip~~~~~l~--~L~~~~~L~~L~ls~N~l~g~~iP~~~~-------~l~~L~~L~Ls~N~l~~iP~~l~-~l~~L~~l 280 (352)
.+|..++.+. .| +.|++++|+++| .+|..|. .+++|++|+|++|+++.+|.++. .+++|+.|
T Consensus 391 ~lp~~~~~~~l~~L------~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 391 YIPNIFDAKSVSVM------SAIDFSYNEIGS-VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp SCCSCCCTTCSSCE------EEEECCSSCTTT-TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred ccchhhhhcccCcc------CEEECcCCcCCC-cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 7777665543 44 456666666665 4555555 55556666666666665555432 35555554
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.1e-29 Score=255.13 Aligned_cols=125 Identities=24% Similarity=0.352 Sum_probs=84.2
Q ss_pred CCCccEEEeeCCcCcc------------------cCcccc--CCCCCCEEEccCCcCc-ccccccCCCCCCcEEEccCCC
Q psy5270 1 MLYITRITLSHNKLKE------------------IPPGLA--NLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNR 59 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~------------------ip~~l~--~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N~ 59 (352)
|++|++|+|++|+|+. +|++++ ++++|++|+|++|++. .+|..++++++|+.|++++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4567777777777775 777766 7777777777777766 677777777777777777776
Q ss_pred -CCc--cccccCCCC-------CCCEEEccCCCCCCCCCCC--ccccCccCcEEEccCCccccchhhccCcccHHHHHHh
Q psy5270 60 -LSS--LPRGFGAFP-------VLEVLDLTYNNLNEQSLPG--NFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILET 127 (352)
Q Consensus 60 -l~~--ip~~~~~l~-------~L~~L~Ls~N~l~g~~~p~--~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~ 127 (352)
++. +|..+++++ +|+.|++++|+++ .+|. .|+++++|++|++++|+++.+| .++++++|+.|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 663 665544433 6666666666665 3666 6666666666666666666666 66666666655554
Q ss_pred c
Q psy5270 128 F 128 (352)
Q Consensus 128 ~ 128 (352)
.
T Consensus 604 ~ 604 (876)
T 4ecn_A 604 Y 604 (876)
T ss_dssp S
T ss_pred C
Confidence 3
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=5.6e-29 Score=253.28 Aligned_cols=274 Identities=21% Similarity=0.226 Sum_probs=190.8
Q ss_pred CCCccEEEeeCCcCc-ccCccccCCCCCCEEEccCCc-Ccc--cccccCCCC-------CCcEEEccCCCCCcccc--cc
Q psy5270 1 MLYITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQ-IET--LPTSLSSLP-------KLRILNLGMNRLSSLPR--GF 67 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~-l~~--ip~~l~~L~-------~L~~L~L~~N~l~~ip~--~~ 67 (352)
|++|++|+|++|++. .+|+.|+++++|++|+|++|+ ++. +|..+++++ +|++|++++|+++.+|. .+
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 578999999999988 899999999999999999998 874 888777665 99999999999999999 89
Q ss_pred CCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCccc-HHHHHHhcc-----hhhHhhcC---c
Q psy5270 68 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN-LQIILETFL-----PDMMEKNR---G 138 (352)
Q Consensus 68 ~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~-L~~L~l~~~-----p~~~~~~~---g 138 (352)
+++++|+.|++++|+++ .+| .|+++++|++|++++|+++.+|..++++++ |+.|+++.. |....... .
T Consensus 570 ~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp TTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 99999999999999998 588 899999999999999999999999999988 988887752 22111111 1
Q ss_pred eEeecccccccc------------CCCCccccccchhhhhhhhHHhHHHHH--HHHhcCCceeecccCcccccC------
Q psy5270 139 HIVGISSMAGIV------------GLPNLVPYCASKFAVRGLMEALAEELR--EDARNSKIKFTSIFPFMVDTG------ 198 (352)
Q Consensus 139 ~i~~iss~~~l~------------~lp~l~~~~~s~~~l~~~~~~l~~~l~--~~~~~~~n~~~g~~P~~~~~~------ 198 (352)
....++.+.-.+ ..+.+.....+.+.+..+...+...+. ..+++++|+++.+.+......
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 222222211111 111333334444444433222211111 234455666663333222211
Q ss_pred --CccCcccccccCCCcccCCC--CCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCC------Ccce-ec
Q psy5270 199 --LCKNPKIKMNRLSSLPRGFG--AFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGD------NDFE-VL 267 (352)
Q Consensus 199 --~l~~l~l~~n~l~~ip~~~~--~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~------N~l~-~i 267 (352)
.++.+++++|+++.+|..+. .++.| +.|+|++|++++ +|..++.+++|+.|+|++ |++. .+
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L------~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYL------SNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTC------CEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCc------CEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence 56667777777777777665 66666 577777777775 677777777777777765 5666 77
Q ss_pred chhhhcccccccccCCce
Q psy5270 268 PAEIGNLKNLQIMLEPRW 285 (352)
Q Consensus 268 P~~l~~l~~L~~l~~~~~ 285 (352)
|.+++++++|+.|....+
T Consensus 799 p~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CTTGGGCSSCCEEECCSS
T ss_pred hHHHhcCCCCCEEECCCC
Confidence 777777777777744433
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.2e-28 Score=224.17 Aligned_cols=203 Identities=23% Similarity=0.264 Sum_probs=174.1
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC-ccccccCC---------C
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGFGA---------F 70 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~---------l 70 (352)
+++|++|+|++|.++.+|+.++++++|++|+|++|+++.+|..++++++|++|++++|++. .+|..++. +
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 4689999999999999999999999999999999999999999999999999999998766 88887765 9
Q ss_pred CCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeecccccccc
Q psy5270 71 PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV 150 (352)
Q Consensus 71 ~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~ 150 (352)
++|++|++++|+++ .+|..++++++|++|++++|+++.+|+.++++++|++|+++.
T Consensus 183 ~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~---------------------- 238 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG---------------------- 238 (328)
T ss_dssp TTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT----------------------
T ss_pred CCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC----------------------
Confidence 99999999999998 589999999999999999999999999998888877654442
Q ss_pred CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc-cccCCccCcccccccCC-CcccCCCCCcccchhhh
Q psy5270 151 GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSF 228 (352)
Q Consensus 151 ~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~ 228 (352)
|.+.+.+|.. .....++.+++++|++. .+|..++.++.|
T Consensus 239 ----------------------------------n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L----- 279 (328)
T 4fcg_A 239 ----------------------------------CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL----- 279 (328)
T ss_dssp ----------------------------------CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC-----
T ss_pred ----------------------------------CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC-----
Confidence 3333334432 24556788899988766 899988888888
Q ss_pred hhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecc
Q psy5270 229 TTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 268 (352)
Q Consensus 229 L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP 268 (352)
+.|++++|++.| .+|+.++++++|+.+++..|.+..++
T Consensus 280 -~~L~L~~n~~~~-~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 280 -EKLDLRGCVNLS-RLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp -CEEECTTCTTCC-CCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred -CEEeCCCCCchh-hccHHHhhccCceEEeCCHHHHHHHh
Confidence 799999999999 89999999999999999887766433
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=5.1e-28 Score=231.14 Aligned_cols=126 Identities=28% Similarity=0.430 Sum_probs=108.0
Q ss_pred CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCc-cc-ccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEE
Q psy5270 2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIE-TL-PTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLD 77 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~-~i-p~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~ 77 (352)
++|++|||++|.++.+ |..|+++++|++|++++|.+. .+ |..|.++++|++|++++|+++.+ |..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4689999999999955 778999999999999999987 66 45789999999999999999955 77899999999999
Q ss_pred ccCCCCCCCCCCCc--cccCccCcEEEccCCccccc-hhh-ccCcccHHHHHHhc
Q psy5270 78 LTYNNLNEQSLPGN--FFMLETLRALYLGDNDFEVL-PAE-IGNLKNLQIILETF 128 (352)
Q Consensus 78 Ls~N~l~g~~~p~~--~~~l~~L~~L~l~~N~l~~i-p~~-~~nl~~L~~L~l~~ 128 (352)
+++|++++ .+|.. |+++++|++|++++|+++.+ |.. ++++++|++++++.
T Consensus 110 L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 110 LTQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp CTTSCCBT-HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCCCCc-cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 99999987 45554 88999999999999999965 555 78888888887765
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-27 Score=236.58 Aligned_cols=273 Identities=22% Similarity=0.182 Sum_probs=129.7
Q ss_pred CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L 78 (352)
++|++|+|++|.++.+| ..|+++++|++|+|++|.++.+| ..|+++++|++|+|++|.++.+|+. |+++++|+.|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 45555555555555333 24555555555555555555443 2345555555555555555555544 355555555555
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchh--hHhhcCceEeeccccc--cc--cCC
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPD--MMEKNRGHIVGISSMA--GI--VGL 152 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~--~~~~~~g~i~~iss~~--~l--~~l 152 (352)
++|.+++ ..|..|+++++|++|++++|+++.+| ++.+++|+.++++...- ...........++.+. .+ ...
T Consensus 155 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 155 SNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp CSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred eCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 5555554 34445555555555555555555443 22222332222221000 0000000000000000 00 001
Q ss_pred CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCCCCCcccchhhhhhh
Q psy5270 153 PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI 231 (352)
Q Consensus 153 p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~ 231 (352)
+.+.....+.+.+.+........-...+++++|.+.+..|..+ .+..++.+++++|+++.+|..++.++.| +.
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L------~~ 305 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL------KV 305 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTC------CE
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCC------cE
Confidence 1222222222222221000000000233455666666655433 4455666666666666666665555555 56
Q ss_pred hhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270 232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 232 L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~ 287 (352)
|+|++|.++ .+|..++.+++|++|+|++|.++.+| ++.+++|+.+....++.
T Consensus 306 L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 306 LDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp EECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred EECCCCCCC--ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCC
Confidence 777777776 36666777777777777777776554 55556666665444444
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-27 Score=223.19 Aligned_cols=124 Identities=25% Similarity=0.411 Sum_probs=70.6
Q ss_pred CCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L 78 (352)
+++++|++++|.++.+|+. +.++++|++|++++|.++.+| ..++.+++|++|++++|+++.+|+ .|+++++|+.|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4556666666666656554 455566666666666666443 355666666666666666664433 3566666666666
Q ss_pred cCCCCCCCCCCCc-cccCccCcEEEccCCccccch-hhccCcccHHHHHHh
Q psy5270 79 TYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLP-AEIGNLKNLQIILET 127 (352)
Q Consensus 79 s~N~l~g~~~p~~-~~~l~~L~~L~l~~N~l~~ip-~~~~nl~~L~~L~l~ 127 (352)
++|++++ +|.. |+++++|++|++++|+++.++ ..++++++|+.|+++
T Consensus 125 ~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 125 ERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp CSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CCCccCc--CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 6666653 4443 455666666666666666443 345555555555544
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=3.5e-27 Score=233.34 Aligned_cols=125 Identities=26% Similarity=0.359 Sum_probs=88.2
Q ss_pred CccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccC
Q psy5270 3 YITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~ 80 (352)
+|+.|++++|.++.+|+. |+++++|++|++++|+++.+|+.++.+++|++|++++|+++.+ |..++++++|+.|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 567777777777765544 7777777777777777777777777777777777777777754 44677777777777777
Q ss_pred CCCCCCCCCC-ccccCccCcEEEccCCccccc---hhhccCcccHHHHHHhc
Q psy5270 81 NNLNEQSLPG-NFFMLETLRALYLGDNDFEVL---PAEIGNLKNLQIILETF 128 (352)
Q Consensus 81 N~l~g~~~p~-~~~~l~~L~~L~l~~N~l~~i---p~~~~nl~~L~~L~l~~ 128 (352)
|.+.+ .+|. .++++++|++|++++|+++.+ |..++++++|+.++++.
T Consensus 335 n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 335 NTKRL-ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp CSSCC-BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred CCccc-ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC
Confidence 77765 4554 367777777777777777643 55667777776666554
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.4e-27 Score=225.39 Aligned_cols=117 Identities=24% Similarity=0.322 Sum_probs=100.9
Q ss_pred CCCccEEEeeCCcCc-ccC-ccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCc-cccc--cCCCCCCC
Q psy5270 1 MLYITRITLSHNKLK-EIP-PGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSS-LPRG--FGAFPVLE 74 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~-~ip-~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~-ip~~--~~~l~~L~ 74 (352)
+++|++|++++|.+. .+| ..|+++++|++|+|++|+++.+ |..++++++|++|++++|+++. +|.. ++++++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 578999999999997 775 5689999999999999999955 7899999999999999999984 5555 89999999
Q ss_pred EEEccCCCCCCCCCCCc-cccCccCcEEEccCCcccc-chhhccCc
Q psy5270 75 VLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEV-LPAEIGNL 118 (352)
Q Consensus 75 ~L~Ls~N~l~g~~~p~~-~~~l~~L~~L~l~~N~l~~-ip~~~~nl 118 (352)
.|++++|++++ ..|.. ++++++|++|++++|+++. .|..++++
T Consensus 133 ~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 133 MLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp EEECCSSBCCS-CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred EEECCCCccCc-cCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 99999999997 56776 8899999999999999984 45566554
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.1e-25 Score=206.29 Aligned_cols=238 Identities=26% Similarity=0.319 Sum_probs=178.2
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccC
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~ 80 (352)
+++.++++++.++++|..+. ++|++|++++|.++.+ |..+.++++|++|++++|+++.+ |..|+++++|+.|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 57889999999999998875 5899999999999866 45899999999999999999966 67799999999999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeec-cccccccCCCCcccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGI-SSMAGIVGLPNLVPY 158 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~i-ss~~~l~~lp~l~~~ 158 (352)
|+++. +|..+. ++|++|++++|+++.+|. .++++++|+.++++... +... .....+..+ .+.
T Consensus 112 n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~---------l~~~~~~~~~~~~l-~L~-- 175 (332)
T 2ft3_A 112 NHLVE--IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP---------LENSGFEPGAFDGL-KLN-- 175 (332)
T ss_dssp SCCCS--CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC---------CBGGGSCTTSSCSC-CCS--
T ss_pred CcCCc--cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc---------cccCCCCcccccCC-ccC--
Confidence 99974 787776 789999999999997765 57888888877665411 1000 000111111 111
Q ss_pred ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcc-cCCCCCcccchhhhhhhhhhccc
Q psy5270 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLP-RGFGAFPVLEAFSFTTILDLTYN 237 (352)
Q Consensus 159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip-~~~~~l~~L~~~~~L~~L~ls~N 237 (352)
.+++++|+++++... .. ..++.+++++|+++.++ ..+..++.| +.|++++|
T Consensus 176 --------------------~L~l~~n~l~~l~~~-~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L------~~L~L~~N 227 (332)
T 2ft3_A 176 --------------------YLRISEAKLTGIPKD-LP-ETLNELHLDHNKIQAIELEDLLRYSKL------YRLGLGHN 227 (332)
T ss_dssp --------------------CCBCCSSBCSSCCSS-SC-SSCSCCBCCSSCCCCCCTTSSTTCTTC------SCCBCCSS
T ss_pred --------------------EEECcCCCCCccCcc-cc-CCCCEEECCCCcCCccCHHHhcCCCCC------CEEECCCC
Confidence 123445566553322 21 56788889999998665 567777776 68999999
Q ss_pred cccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270 238 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 238 ~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~ 287 (352)
++++ ..|..++.+++|++|+|++|+++.+|.+++.+++|+.+....+.+
T Consensus 228 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 228 QIRM-IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CCCC-CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCC
T ss_pred cCCc-CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCC
Confidence 9987 566688999999999999999999999999999999886555444
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=2e-26 Score=211.13 Aligned_cols=240 Identities=22% Similarity=0.314 Sum_probs=164.9
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccC
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~ 80 (352)
+++.++++++.++.+|..+. +++++|++++|+++.+|+ .++++++|++|++++|+++.+ |..|+++++|+.|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 57788888888888887765 478888888888886654 788888888888888888866 67788888888888888
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~ 159 (352)
|+++. +|..+. ++|++|++++|+++.++. .++++++|+.++++...- .. .+ .....+..++.+...
T Consensus 110 n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-----~~--~~-~~~~~~~~l~~L~~L- 176 (330)
T 1xku_A 110 NQLKE--LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-----KS--SG-IENGAFQGMKKLSYI- 176 (330)
T ss_dssp SCCSB--CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-----CG--GG-BCTTGGGGCTTCCEE-
T ss_pred CcCCc--cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-----Cc--cC-cChhhccCCCCcCEE-
Confidence 88874 677665 688888888888886554 577787777766554110 00 00 001122223333222
Q ss_pred cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhcccc
Q psy5270 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNN 238 (352)
Q Consensus 160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~ 238 (352)
.+++|.++.+... .. ..++.+++++|+++.+ |..++.++.| +.|++++|.
T Consensus 177 ---------------------~l~~n~l~~l~~~-~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L------~~L~Ls~n~ 227 (330)
T 1xku_A 177 ---------------------RIADTNITTIPQG-LP-PSLTELHLDGNKITKVDAASLKGLNNL------AKLGLSFNS 227 (330)
T ss_dssp ---------------------ECCSSCCCSCCSS-CC-TTCSEEECTTSCCCEECTGGGTTCTTC------CEEECCSSC
T ss_pred ---------------------ECCCCccccCCcc-cc-ccCCEEECCCCcCCccCHHHhcCCCCC------CEEECCCCc
Confidence 2334444432221 11 4567778888888754 5566666666 678888888
Q ss_pred ccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 239 l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~ 287 (352)
+++ ..|..+..+++|++|+|++|+++.+|.+++.+++|+.+....+.+
T Consensus 228 l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 228 ISA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CCE-ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred Cce-eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC
Confidence 876 456678888888888888888888888888888888775544443
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-26 Score=210.19 Aligned_cols=221 Identities=22% Similarity=0.284 Sum_probs=107.5
Q ss_pred CccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCccc---ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEc
Q psy5270 3 YITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDL 78 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~i---p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L 78 (352)
+|++|++++|+++.+|++ |+++++|++|++++|+++.+ |..+..+++|++|++++|.++.+|..+..+++|+.|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 445555555555555443 34555555555555555422 34444455555555555555555555555555555555
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP 157 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~ 157 (352)
++|++++...+..+..+++|++|++++|+++ ..|..++++++|+.++++
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~------------------------------ 158 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------------------------------ 158 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT------------------------------
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC------------------------------
Confidence 5555543111124455555555555555554 233344444444433332
Q ss_pred cccchhhhhhhhHHhHHHHHHHHhcCCceeec-ccCcc-cccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhh
Q psy5270 158 YCASKFAVRGLMEALAEELREDARNSKIKFTS-IFPFM-VDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDL 234 (352)
Q Consensus 158 ~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g-~~P~~-~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~l 234 (352)
+|.+.+ ..|.. .....++.+++++|+++.+ |..++.++.| +.|++
T Consensus 159 --------------------------~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L 206 (306)
T 2z66_A 159 --------------------------GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------QVLNM 206 (306)
T ss_dssp --------------------------TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------CEEEC
T ss_pred --------------------------CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC------CEEEC
Confidence 333333 22221 1334455555666666543 4445555444 45666
Q ss_pred ccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcc-cccccccCCcee
Q psy5270 235 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNL-KNLQIMLEPRWV 286 (352)
Q Consensus 235 s~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l-~~L~~l~~~~~~ 286 (352)
++|.+++ ..+..+..+++|++|||++|+++ .+|..++.+ ++|+.+....++
T Consensus 207 ~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 207 SHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCccCc-cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6666654 33335555666666666666665 445555555 355555433333
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=3.1e-27 Score=221.53 Aligned_cols=124 Identities=27% Similarity=0.366 Sum_probs=107.2
Q ss_pred CCCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEE
Q psy5270 1 MLYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLD 77 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~ 77 (352)
+++|++|++++|.++.+|+ .|+++++|++|++++|.++.+ |..++++++|++|++++|+++.+|.. |+++++|+.|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 5789999999999997765 799999999999999999966 55789999999999999999999987 58999999999
Q ss_pred ccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHh
Q psy5270 78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILET 127 (352)
Q Consensus 78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~ 127 (352)
+++|++++ ..|..|+++++|++|++++|+++.++ ++.+++|+.++++
T Consensus 148 L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 148 MSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVS 194 (390)
T ss_dssp CCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECC
T ss_pred CCCCccCc-cChhhccCCCCCCEEECCCCcCCccc--cccccccceeecc
Confidence 99999997 56778999999999999999999764 3444555544443
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=4.9e-26 Score=218.86 Aligned_cols=279 Identities=20% Similarity=0.220 Sum_probs=184.1
Q ss_pred CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L 78 (352)
+++++|||++|+++.+ |..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|+++.+|.. |+++++|+.|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4678889999998865 45788888899999999988855 77888888899999999988888764 788888888888
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhcc-----h-hhHhhc-CceEeeccc-----
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFL-----P-DMMEKN-RGHIVGISS----- 145 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~-----p-~~~~~~-~g~i~~iss----- 145 (352)
++|++++ ..|..|.++++|++|++++|+++.+ |..|+++++|+.|+++.. + ..+... ......+..
T Consensus 112 s~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 8888887 5677888888888888888888854 457777777777766541 1 111110 011111110
Q ss_pred --cccccCCCCccccccchhhhhhhhH-HhHH-HHHHHHhcCCceeecccCcc-cccCCccCcccccccCCCccc-CCCC
Q psy5270 146 --MAGIVGLPNLVPYCASKFAVRGLME-ALAE-ELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPR-GFGA 219 (352)
Q Consensus 146 --~~~l~~lp~l~~~~~s~~~l~~~~~-~l~~-~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~-~~~~ 219 (352)
...+..++.+.....+.+...+... .... .-...+++++|+++++.+.. .....++.+++++|+++.++. .+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 0122223333322222211110000 0000 00012234455555443322 245567778888888886554 4556
Q ss_pred CcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecch-hhhcccccccccCCceeee
Q psy5270 220 FPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIMLEPRWVIS 288 (352)
Q Consensus 220 l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~-~l~~l~~L~~l~~~~~~~~ 288 (352)
++.| +.|+|++|++++ ..|..|..+++|++|+|++|+++.+|. .+.++++|+.+....++..
T Consensus 271 l~~L------~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 271 LLRL------QEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTC------CEEECCSSCCSE-ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccC------CEEECCCCccce-ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 6666 689999999987 678889999999999999999996665 4688899998876666653
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=3.2e-26 Score=226.47 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=47.2
Q ss_pred hhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCceee------eccccccCCccccc
Q psy5270 229 TTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRWVI------SMGSCANGGGYYHY 301 (352)
Q Consensus 229 L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~~~------~~~~~~~~~~~~~~ 301 (352)
|+.|++++|.+++..+|..++.+++|++|+|++|+++ .+|..++++++|+.+....+.+ ....++.. ..+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~l 528 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL-STLDC 528 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC-CEEEC
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC-CEEEC
Confidence 3566677776665225666777777777777777777 4455677777777764333322 22223333 24666
Q ss_pred ccccccCCC
Q psy5270 302 SYSVVRGCD 310 (352)
Q Consensus 302 ~~~~~~~~~ 310 (352)
+++.+..++
T Consensus 529 ~~N~l~~~p 537 (606)
T 3vq2_A 529 SFNRIETSK 537 (606)
T ss_dssp TTSCCCCEE
T ss_pred CCCcCcccC
Confidence 666665443
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.4e-26 Score=226.34 Aligned_cols=127 Identities=28% Similarity=0.383 Sum_probs=105.6
Q ss_pred CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L 78 (352)
++|++||+++|+++.+ |.+|+++++|++|++++|+++.+ |..|+++++|++|++++|+++.+|+. |+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4688999999999855 56789999999999999999865 46889999999999999999977665 899999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCc-cccch-hhccCcccHHHHHHhc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLP-AEIGNLKNLQIILETF 128 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~-l~~ip-~~~~nl~~L~~L~l~~ 128 (352)
++|++++..+|..++++++|++|++++|+ +..+| ..++++++|+.++++.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 99999864467788889999999999998 45776 4788888888877664
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4.2e-26 Score=210.23 Aligned_cols=255 Identities=22% Similarity=0.322 Sum_probs=142.4
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++|++|++++|.++.+|. +..+++|++|++++|+++.+|+ +..+++|++|++++|+++.+| .++++++|++|++++|
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED 120 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS
T ss_pred ccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC
Confidence 345555555555554443 4455555555555555554444 555555555555555555443 3455555555555555
Q ss_pred CCCCCCCCCccccCccCcEEEccCC-----------------------ccccchhhccCcccHHHHHHhcchhhHhhcCc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDN-----------------------DFEVLPAEIGNLKNLQIILETFLPDMMEKNRG 138 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N-----------------------~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g 138 (352)
.+++ +|. +..+++|++|++++| .++.++. ++++++|+.++++..
T Consensus 121 ~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n--------- 187 (347)
T 4fmz_A 121 NISD--ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN--------- 187 (347)
T ss_dssp CCCC--CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS---------
T ss_pred cccC--chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC---------
Confidence 5543 232 444445555555554 4443332 344444444333321
Q ss_pred eEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCC
Q psy5270 139 HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFG 218 (352)
Q Consensus 139 ~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~ 218 (352)
.+.. ...+..++.+.....+.+.+..........-...+++++|.+++..+ ......++.+++++|+++.++ .+.
T Consensus 188 ~l~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~ 262 (347)
T 4fmz_A 188 QIED---ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVK 262 (347)
T ss_dssp CCCC---CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred cccc---cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHh
Confidence 1111 11123333443333333333322210000001234566777777655 456677888999999998774 355
Q ss_pred CCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCcee
Q psy5270 219 AFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRWV 286 (352)
Q Consensus 219 ~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~~ 286 (352)
.++.| +.|++++|++++ + +.+..+++|+.|++++|+++ ..|..++++++|+.+....++
T Consensus 263 ~l~~L------~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 263 DLTKL------KMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TCTTC------CEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred cCCCc------CEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 55555 799999999985 4 46889999999999999999 677789999999988544443
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.6e-25 Score=200.93 Aligned_cols=120 Identities=28% Similarity=0.401 Sum_probs=84.3
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNN 82 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~ 82 (352)
+.++.+++.++.+|.++. ++|++|++++|.++.+| ..+.++++|++|++++|+++.+ |..|+++++|+.|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 467777777777776553 47778888887777654 4677777788888877777755 5567777778888887776
Q ss_pred -CCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHh
Q psy5270 83 -LNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILET 127 (352)
Q Consensus 83 -l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~ 127 (352)
+++ ..|..|..+++|++|++++|+++.+ |..++++++|++++++
T Consensus 92 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 92 QLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp TCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred Cccc-cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 654 3466777777788888888777754 4566666666654433
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.4e-26 Score=218.69 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=104.3
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
+++|++||+++|.++.+| +++.+++|++|++++|+++.+| ++.+++|++|++++|+++.+| ++++++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 468999999999999887 7899999999999999999886 899999999999999999886 89999999999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF 128 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~ 128 (352)
|++++ +| ++++++|++|++++|+++.+| ++++++|++++++.
T Consensus 116 N~l~~--l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 116 NKLTK--LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHL 157 (457)
T ss_dssp SCCSC--CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTT
T ss_pred CcCCe--ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCC
Confidence 99987 55 889999999999999999875 77888887777665
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3e-25 Score=219.47 Aligned_cols=245 Identities=20% Similarity=0.219 Sum_probs=190.9
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCC-ccccc-cCCCCCCCEEE
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS-SLPRG-FGAFPVLEVLD 77 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~-~ip~~-~~~l~~L~~L~ 77 (352)
+++|++|++++|+++++|++++++++|++|++++|.++.+ |..++.+++|++|++++|.+. .+|.. ++++++|+.|+
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 4689999999999999999999999999999999999965 668999999999999999998 77765 89999999999
Q ss_pred ccCCCCCCCCC--CCccccCccCcEEEccCCcccc-chhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCC
Q psy5270 78 LTYNNLNEQSL--PGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPN 154 (352)
Q Consensus 78 Ls~N~l~g~~~--p~~~~~l~~L~~L~l~~N~l~~-ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~ 154 (352)
+++|++++ .. |..++++++|++|++++|+++. .|..++++++|+.++++.. .+........+..++.
T Consensus 357 l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---------~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 357 LSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT---------RLKVKDAQSPFQNLHL 426 (606)
T ss_dssp CCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC---------CEECCTTCCTTTTCTT
T ss_pred CCCCcccc-ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC---------cCCCcccchhhhCccc
Confidence 99999987 33 7789999999999999999985 4668888888888776641 1221111122333444
Q ss_pred ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCC--cc--cCCCCCcccchhhhh
Q psy5270 155 LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSS--LP--RGFGAFPVLEAFSFT 229 (352)
Q Consensus 155 l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~--ip--~~~~~l~~L~~~~~L 229 (352)
+... ++++|.+.+..|..+ ..+.++.+++++|+++. +| ..++.++.|
T Consensus 427 L~~L----------------------~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L------ 478 (606)
T 3t6q_A 427 LKVL----------------------NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL------ 478 (606)
T ss_dssp CCEE----------------------ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC------
T ss_pred CCEE----------------------ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc------
Confidence 3322 345666666666543 46678888999998873 23 345555555
Q ss_pred hhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCce
Q psy5270 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRW 285 (352)
Q Consensus 230 ~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~ 285 (352)
+.|++++|++++ ..|..|+.+++|++|+|++|+++ .+|..++++++| .+....+
T Consensus 479 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 479 EILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred cEEECCCCccCc-cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 789999999987 67888999999999999999998 778889998888 6644433
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.2e-26 Score=223.51 Aligned_cols=116 Identities=23% Similarity=0.309 Sum_probs=84.0
Q ss_pred CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEcc
Q psy5270 2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLT 79 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls 79 (352)
++|++||+++|.++.+| ..|+++++|++|+|++|+++.+ |..|+++++|++|++++|+++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 35777788887777555 4677777788888888877755 66777778888888888877777776 67778888888
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccH
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L 121 (352)
+|++++..+|..|+++++|++|++++|+++. ..++++++|
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L 138 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHL 138 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccc
Confidence 8877764567777777888888887777764 234444444
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.5e-25 Score=214.12 Aligned_cols=242 Identities=23% Similarity=0.311 Sum_probs=162.4
Q ss_pred ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEccCC
Q psy5270 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N 81 (352)
...++.+++.++++|.++. +++++|+|++|+++.+ |..|.++++|+.|+|++|+++.++ ..|+++++|+.|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3567777777777777665 4777888888877754 557777778888888888777554 45777778888888888
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 160 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~ 160 (352)
++++ ..+..|.++++|++|++++|+++.+|. .+.++++|+.|+++... .-..+ ....+..++.+...
T Consensus 134 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----~l~~i----~~~~~~~l~~L~~L-- 201 (452)
T 3zyi_A 134 WLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----KLEYI----SEGAFEGLFNLKYL-- 201 (452)
T ss_dssp CCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----TCCEE----CTTTTTTCTTCCEE--
T ss_pred cCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----Ccccc----ChhhccCCCCCCEE--
Confidence 7775 334457777778888888887776655 56677777666554311 00011 01122233333322
Q ss_pred chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhccccc
Q psy5270 161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNL 239 (352)
Q Consensus 161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l 239 (352)
++++|++++. |.......++.+++++|+++.+ |..+..++.| +.|++++|++
T Consensus 202 --------------------~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------~~L~L~~n~l 254 (452)
T 3zyi_A 202 --------------------NLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL------KKLWVMNSQV 254 (452)
T ss_dssp --------------------ECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTC------CEEECTTSCC
T ss_pred --------------------ECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCC------CEEEeCCCcC
Confidence 2334445443 4444556777888888888855 6667777776 6888899988
Q ss_pred cccCCCchhhhhHHhHhhhCCCCcceecchh-hhcccccccccCCceee
Q psy5270 240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~-l~~l~~L~~l~~~~~~~ 287 (352)
++ ..|..|..+++|+.|+|++|+++.+|.. +..+++|+.+....++.
T Consensus 255 ~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 255 SL-IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ce-ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 87 5678888888899999999988866554 67888888875555544
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.1e-26 Score=212.98 Aligned_cols=248 Identities=21% Similarity=0.251 Sum_probs=149.0
Q ss_pred CccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEcc
Q psy5270 3 YITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLT 79 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls 79 (352)
+|++|++++|+++.+|+ .++++++|++|++++|+++.+ |..++++++|++|++++|+++.+|.. ++++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56777777777776655 577777777777777777754 44677777777777777777777665 6777777777777
Q ss_pred CCCCCCCCCCC--ccccCccCcEEEccCCc-cccc-hhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCc
Q psy5270 80 YNNLNEQSLPG--NFFMLETLRALYLGDND-FEVL-PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155 (352)
Q Consensus 80 ~N~l~g~~~p~--~~~~l~~L~~L~l~~N~-l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l 155 (352)
+|++++ +|. .+.++++|++|++++|+ ++.+ |..++++++|+.++++.. ... .+ ....+..++.+
T Consensus 133 ~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-----~l~----~~-~~~~l~~l~~L 200 (353)
T 2z80_A 133 GNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-----DLQ----SY-EPKSLKSIQNV 200 (353)
T ss_dssp TCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-----TCC----EE-CTTTTTTCSEE
T ss_pred CCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-----CcC----cc-CHHHHhccccC
Confidence 777764 454 66777777777777773 5554 346677777666655431 000 00 01122233333
Q ss_pred cccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhh
Q psy5270 156 VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILD 233 (352)
Q Consensus 156 ~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ 233 (352)
.....+.+ .+....+... ....++.+++++|+++.++.. +.. ......++.++
T Consensus 201 ~~L~l~~n----------------------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---~~~~~~l~~l~ 255 (353)
T 2z80_A 201 SHLILHMK----------------------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---GETNSLIKKFT 255 (353)
T ss_dssp EEEEEECS----------------------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEE
T ss_pred CeecCCCC----------------------ccccchhhhhhhcccccEEECCCCcccccccccccc---ccccchhhccc
Confidence 33333222 2221111111 234566777777877754421 111 11111223445
Q ss_pred hcccccccc---CCCchhhhhHHhHhhhCCCCcceecchhh-hcccccccccCCceee
Q psy5270 234 LTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQIMLEPRWVI 287 (352)
Q Consensus 234 ls~N~l~g~---~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l-~~l~~L~~l~~~~~~~ 287 (352)
+++|.+++. .+|+.+..+++|++||+++|+++.+|.++ +++++|+.+....++.
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 555554431 36778888999999999999999888884 8889998886555554
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=2e-26 Score=227.92 Aligned_cols=265 Identities=19% Similarity=0.198 Sum_probs=171.9
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEccC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls~ 80 (352)
++|+.|++++|.++.+| ++..+++|++|++++|.++.+| .+ .+++|+.|++++|+.. .+ .++.+++|+.|++++
T Consensus 285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSR 359 (606)
T ss_dssp TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCS
T ss_pred CCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcC
Confidence 57888888888888888 7888888888888888888777 44 7788888888887544 33 466777888888888
Q ss_pred CCCCCCC-CCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270 81 NNLNEQS-LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159 (352)
Q Consensus 81 N~l~g~~-~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~ 159 (352)
|++++.. +|..++.+++|++|++++|.++.+|..++++++|+.++++. ..+........+..++.+....
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH---------STLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTT---------SEEESTTTTTTTTTCTTCCEEE
T ss_pred CccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCC---------CccCCccChhhhhccccCCEEE
Confidence 8777511 36777777788888888888777777777777777766554 1222221112333344444333
Q ss_pred cchhhhhhhhHHhHHHH--HHHHhcCCceeec-ccCccc-ccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhh
Q psy5270 160 ASKFAVRGLMEALAEEL--REDARNSKIKFTS-IFPFMV-DTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDL 234 (352)
Q Consensus 160 ~s~~~l~~~~~~l~~~l--~~~~~~~~n~~~g-~~P~~~-~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~l 234 (352)
.+.+.+.+........+ ...+++++|.+++ ..|..+ ....++.+++++|+++.+ |..++.++.| +.|++
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L 504 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL------QLLNM 504 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------CEEEC
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC------CEEEC
Confidence 33333222111100000 0123455666666 344433 456677777777777743 5556666666 57888
Q ss_pred ccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhccc-ccccccCCceee
Q psy5270 235 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK-NLQIMLEPRWVI 287 (352)
Q Consensus 235 s~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~-~L~~l~~~~~~~ 287 (352)
++|++++ .+|..++.+++|++|||++|+++.+|.++..+. +|+.+....++.
T Consensus 505 s~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 505 SHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CSSCCSC-EEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCcCCC-cCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 8888876 567778888888888888888887777777775 477776555554
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.9e-26 Score=208.52 Aligned_cols=218 Identities=20% Similarity=0.220 Sum_probs=146.2
Q ss_pred ccEEEeeCCcCc--ccCcccc-------CCCCCCEEEccCCcCc-cccccc--CCCCCCcEEEccCCCCCccccccCCC-
Q psy5270 4 ITRITLSHNKLK--EIPPGLA-------NLVNLEILTLFNNQIE-TLPTSL--SSLPKLRILNLGMNRLSSLPRGFGAF- 70 (352)
Q Consensus 4 L~~L~Ls~N~l~--~ip~~l~-------~l~~L~~L~L~~N~l~-~ip~~l--~~L~~L~~L~L~~N~l~~ip~~~~~l- 70 (352)
|+.|++++|.++ .+|+.+. ++++|++|+|++|+++ .+|..+ +.+++|++|++++|+++.+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 667888888885 6777766 7888999999999988 678776 88889999999999998778777766
Q ss_pred ----CCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCcccc---chhhc--cCcccHHHHHHhcchhhHhhcCceEe
Q psy5270 71 ----PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV---LPAEI--GNLKNLQIILETFLPDMMEKNRGHIV 141 (352)
Q Consensus 71 ----~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~---ip~~~--~nl~~L~~L~l~~~p~~~~~~~g~i~ 141 (352)
++|++|++++|++++ ..|..|+++++|++|++++|++.+ +|..+ +++++|+.|+++..
T Consensus 145 ~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N------------ 211 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA------------ 211 (312)
T ss_dssp TTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS------------
T ss_pred HhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC------------
Confidence 889999999999887 556888888999999999998762 45555 67777766554430
Q ss_pred eccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcc--cCCCC
Q psy5270 142 GISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLP--RGFGA 219 (352)
Q Consensus 142 ~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip--~~~~~ 219 (352)
.+.+.. .....+ ......++.+++++|+++..+ ..+..
T Consensus 212 ----------------------~l~~~~-~~~~~~-----------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 212 ----------------------GMETPS-GVCSAL-----------------AAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp ----------------------CCCCHH-HHHHHH-----------------HHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred ----------------------cCcchH-HHHHHH-----------------HhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 000000 000000 002234566666777766433 22333
Q ss_pred CcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCce
Q psy5270 220 FPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRW 285 (352)
Q Consensus 220 l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~ 285 (352)
++.| +.|++++|+++ .+|..+. ++|++|||++|+++.+|. ++.+++|+.+....+
T Consensus 252 l~~L------~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 252 PSQL------NSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CTTC------CEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred cCCC------CEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 4444 56777777776 4666665 667777777777775565 666777766644333
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=5.9e-26 Score=224.98 Aligned_cols=121 Identities=27% Similarity=0.328 Sum_probs=72.6
Q ss_pred CccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270 3 YITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT 79 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls 79 (352)
++++|||++|+|++||+ +|.++++|++|+|++|+++.+|+ +|.+|++|++|+|++|+++.+|+ .|+++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 45666666666666553 46666666666666666665543 56666666666666666666554 35666666666666
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCccc--cchhhccCcccHHHH
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQII 124 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~--~ip~~~~nl~~L~~L 124 (352)
+|++++ ..+..|+++++|++|++++|+++ .+|..++++++|+++
T Consensus 133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 133 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp TSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 666654 22334666666666666666665 344555544444443
No 33
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.2e-24 Score=195.70 Aligned_cols=196 Identities=28% Similarity=0.370 Sum_probs=158.9
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEcc
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLT 79 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls 79 (352)
+++++.+++++|.++.+|+.+. +++++|+|++|+++.+ |..+..+++|++|++++|+++.+|.. +.+++|+.|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4688999999999999999886 5899999999999965 67899999999999999999988875 899999999999
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~ 158 (352)
+|+++ .+|..+..+++|++|++++|+++.+|+ .|+++++|+.|+++
T Consensus 86 ~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~------------------------------- 132 (290)
T 1p9a_G 86 HNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK------------------------------- 132 (290)
T ss_dssp SSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-------------------------------
T ss_pred CCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-------------------------------
Confidence 99998 489999999999999999999998764 67777776654333
Q ss_pred ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCC-CCCcccchhhhhhhhhhcc
Q psy5270 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGF-GAFPVLEAFSFTTILDLTY 236 (352)
Q Consensus 159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~-~~l~~L~~~~~L~~L~ls~ 236 (352)
+|++++..+..+ ....++.+++++|+++.+|... ..++.| +.|++++
T Consensus 133 -------------------------~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L------~~L~L~~ 181 (290)
T 1p9a_G 133 -------------------------GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL------DTLLLQE 181 (290)
T ss_dssp -------------------------TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC------CEEECCS
T ss_pred -------------------------CCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC------CEEECCC
Confidence 233333333322 3456677788888888877653 556666 6888888
Q ss_pred ccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270 237 NNLNEQSLPGNFFMLETLRALYLGDNDFE 265 (352)
Q Consensus 237 N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~ 265 (352)
|+++ .+|..+..+.+|+.++|++|.+.
T Consensus 182 N~l~--~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 182 NSLY--TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCC--CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCC--ccChhhcccccCCeEEeCCCCcc
Confidence 8887 47888888888888888888886
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=5.4e-26 Score=222.12 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=107.1
Q ss_pred CCCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCC--ccccccCCCCCCCEE
Q psy5270 1 MLYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS--SLPRGFGAFPVLEVL 76 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L 76 (352)
+++|++|++++|+++.+| +.|+++++|++|+|++|+++.+|+ .++++++|++|++++|+++ .+|..++++++|+.|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 578999999999999655 679999999999999999997755 5999999999999999998 457789999999999
Q ss_pred EccCCCCCCCCCC-CccccCccCcEEEccCCccc-cchhhccCcccHHHHHH
Q psy5270 77 DLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILE 126 (352)
Q Consensus 77 ~Ls~N~l~g~~~p-~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L~~L~l 126 (352)
++++|++.+ .+| ..|+++++|++|++++|+++ .+|..++++++|+.+++
T Consensus 129 ~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 129 RIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp EEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred ECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 999999655 465 58999999999999999998 57778887776665543
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.1e-26 Score=226.34 Aligned_cols=274 Identities=19% Similarity=0.190 Sum_probs=195.8
Q ss_pred CCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L 78 (352)
++++.+++++|.++.+|+. ++++++|++|+|++|.++.+| ..|+.+++|++|+|++|.++.+|+ .|+++++|+.|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 5789999999999999876 678999999999999999665 599999999999999999997765 4799999999999
Q ss_pred cCCCCCCCCCCC-ccccCccCcEEEccCCccccch-hhccCcccHHHHHHhcchhh----HhhcCceEeecc--cccccc
Q psy5270 79 TYNNLNEQSLPG-NFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQIILETFLPDM----MEKNRGHIVGIS--SMAGIV 150 (352)
Q Consensus 79 s~N~l~g~~~p~-~~~~l~~L~~L~l~~N~l~~ip-~~~~nl~~L~~L~l~~~p~~----~~~~~g~i~~is--s~~~l~ 150 (352)
++|.+++ +|. .|+++++|++|++++|.++.++ ..|+++++|+.|+++...-. ..........++ ...++.
T Consensus 131 ~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 131 ERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred eCCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 9999986 555 4689999999999999999654 57999999998887752100 000000001110 011111
Q ss_pred CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCC-cccCCCCCcccchhhhh
Q psy5270 151 GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSS-LPRGFGAFPVLEAFSFT 229 (352)
Q Consensus 151 ~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~-ip~~~~~l~~L~~~~~L 229 (352)
..+.+.....+.+.+..+....... ...+.+++|.+++. +.....+.++.+++++|.++. +|..++.++.|
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~-L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 280 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------ 280 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSC-CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------
T ss_pred CCchhheeeccCCcccccccccCCC-CCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCC------
Confidence 1222222222322222111110000 01234556666653 334456677888889998884 46778877777
Q ss_pred hhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 230 ~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~ 287 (352)
+.|+|++|.+++ +|..++.+++|++|+|++|.++.+|..++.+++|+.|....+.+
T Consensus 281 ~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 281 ERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp CEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred CEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence 689999999985 68888889999999999999999999999999999885554433
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=6.7e-26 Score=222.36 Aligned_cols=107 Identities=26% Similarity=0.364 Sum_probs=87.4
Q ss_pred CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEcc
Q psy5270 2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLT 79 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls 79 (352)
++|++||+++|+++.+| ..|+++++|++|+|++|+++.+ |..|+++++|++|++++|+++.+|.. .+++|+.|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 46788888888888666 4788888888888888888865 66788888888888888888888876 78888888888
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCcccc
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEV 110 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ 110 (352)
+|++++..+|..|+++++|++|++++|+++.
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc
Confidence 8888764456788888888888888888763
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=6.4e-26 Score=220.28 Aligned_cols=102 Identities=20% Similarity=0.323 Sum_probs=87.8
Q ss_pred CCCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCc--cccccCCCCCCCEEE
Q psy5270 1 MLYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS--LPRGFGAFPVLEVLD 77 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~ 77 (352)
+++|++|++++|+++.+ |..|+++++|++|+|++|+++.+|.. .+++|++|++++|+++. +|..|+++++|+.|+
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence 57899999999999955 77899999999999999999999887 89999999999999985 678999999999999
Q ss_pred ccCCCCCCCCCCCccccCccC--cEEEccCCcc
Q psy5270 78 LTYNNLNEQSLPGNFFMLETL--RALYLGDNDF 108 (352)
Q Consensus 78 Ls~N~l~g~~~p~~~~~l~~L--~~L~l~~N~l 108 (352)
+++|++++ ..++.+++| ++|++++|++
T Consensus 122 L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 122 LSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred ecCcccch----hhccccccceeeEEEeecccc
Confidence 99999875 245556666 7777777666
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=2.1e-25 Score=223.56 Aligned_cols=269 Identities=23% Similarity=0.261 Sum_probs=162.1
Q ss_pred CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L 78 (352)
+++++||+++|.++.+|+ .|+++++|++|+|++|.++.+ |..++++++|++|++++|+++.+|+ .|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 468889999998887765 588888899999999888854 6678888889999999998888887 4888888999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCcccc-chhhccCcccHHHHHHhcc------hhhHhh---cCceEeecccc--
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIILETFL------PDMMEK---NRGHIVGISSM-- 146 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~-ip~~~~nl~~L~~L~l~~~------p~~~~~---~~g~i~~iss~-- 146 (352)
++|++++ ..|..|+++++|++|++++|+++. .|..++++++|++++++.. +..... ......+++.+
T Consensus 105 ~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9988876 445678888889999999988884 4557788888887776542 111110 01111222111
Q ss_pred -----ccccCCCCccccccchhhhhhhhHHhHHHHH--------HHHhcCCceeecccCcccc-c--CCccCcccccccC
Q psy5270 147 -----AGIVGLPNLVPYCASKFAVRGLMEALAEELR--------EDARNSKIKFTSIFPFMVD-T--GLCKNPKIKMNRL 210 (352)
Q Consensus 147 -----~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~--------~~~~~~~n~~~g~~P~~~~-~--~~l~~l~l~~n~l 210 (352)
..+..++.+.......+.+. ......+. ..+.++++.+.+..|..+. . ..++.+++++|++
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCH---HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred cccChhhhhhhhhhhhhhccccccC---hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 00111111111111111111 11111111 1223445555555554332 1 2256666666666
Q ss_pred CCc-ccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce------ecch----hhhccccccc
Q psy5270 211 SSL-PRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE------VLPA----EIGNLKNLQI 279 (352)
Q Consensus 211 ~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~------~iP~----~l~~l~~L~~ 279 (352)
+.+ |..++.++.| +.|++++|++++ ..|..|+.+++|++|++++|... .+|. .++++++|+.
T Consensus 261 ~~~~~~~~~~l~~L------~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 261 NVVGNDSFAWLPQL------EYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp CEECTTTTTTCTTC------CEEECCSCCBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred CccCcccccCcccc------cEeeCCCCccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 643 3445555555 466666666665 45666666666666666665433 2332 4566666666
Q ss_pred cc
Q psy5270 280 ML 281 (352)
Q Consensus 280 l~ 281 (352)
+.
T Consensus 334 L~ 335 (680)
T 1ziw_A 334 LN 335 (680)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.3e-25 Score=214.11 Aligned_cols=260 Identities=22% Similarity=0.271 Sum_probs=174.9
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNN 82 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~ 82 (352)
+.++.++++++.+|.++. +++++|+|++|+++.+ |..|.++++|++|+|++|+++.+ |..|+++++|+.|+|++|+
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 578999999999999875 5899999999999966 56899999999999999999966 7789999999999999999
Q ss_pred CCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270 83 LNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161 (352)
Q Consensus 83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s 161 (352)
+++ ..+..|+++++|++|++++|+++.+ |..+.++++|+.|+++... +..+ ....+..++.+.....+
T Consensus 92 l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~---------l~~~-~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 92 LKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND---------LVYI-SHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp CCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT---------CCEE-CTTSSTTCTTCCEEEEE
T ss_pred CCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc---------ccee-ChhhccCCCCCCEEECC
Confidence 986 3344689999999999999999954 6689999999888776511 1111 11223344455444444
Q ss_pred hhhhhhhhHHhHHHHH--HHHhcCCceeecccCccc-ccC------------------------CccCcccccccCCCcc
Q psy5270 162 KFAVRGLMEALAEELR--EDARNSKIKFTSIFPFMV-DTG------------------------LCKNPKIKMNRLSSLP 214 (352)
Q Consensus 162 ~~~l~~~~~~l~~~l~--~~~~~~~n~~~g~~P~~~-~~~------------------------~l~~l~l~~n~l~~ip 214 (352)
.+.+..........+. ..+++++|.+.+..+..+ ... .++.+++++|+++.+|
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 4444332221111110 122334444444433211 222 3444455555555555
Q ss_pred c-CCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCc
Q psy5270 215 R-GFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPR 284 (352)
Q Consensus 215 ~-~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~ 284 (352)
. .+..++.| +.|+|++|.+++ ..+..|..+++|+.|+|++|+++ ..|..++++++|+.|+...
T Consensus 241 ~~~~~~l~~L------~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 241 YLAVRHLVYL------RFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp HHHHTTCTTC------CEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred HHHhcCcccc------CeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 2 34444444 677777777776 45566777777777777777777 4466677777777764433
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=1.2e-25 Score=203.78 Aligned_cols=201 Identities=22% Similarity=0.301 Sum_probs=169.8
Q ss_pred CCCccEEEeeCCcCccc---CccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc--ccCCCCCCCE
Q psy5270 1 MLYITRITLSHNKLKEI---PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR--GFGAFPVLEV 75 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~i---p~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~--~~~~l~~L~~ 75 (352)
+++|++|++++|+++.+ |..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.++. .+..+++|+.
T Consensus 51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 130 (306)
T 2z66_A 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130 (306)
T ss_dssp CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCE
T ss_pred cccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCE
Confidence 47899999999999854 677888999999999999999999999999999999999999998765 7999999999
Q ss_pred EEccCCCCCCCCCCCccccCccCcEEEccCCcccc--chhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCC
Q psy5270 76 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV--LPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP 153 (352)
Q Consensus 76 L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~--ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp 153 (352)
|++++|.+++ ..|..+..+++|++|++++|+++. +|..++++++|+.++++
T Consensus 131 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls-------------------------- 183 (306)
T 2z66_A 131 LDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-------------------------- 183 (306)
T ss_dssp EECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT--------------------------
T ss_pred EECCCCcCCc-cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC--------------------------
Confidence 9999999987 678889999999999999999984 78888888777665443
Q ss_pred CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCccc-CCCCCcccchhhhhhh
Q psy5270 154 NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPR-GFGAFPVLEAFSFTTI 231 (352)
Q Consensus 154 ~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~~~~~L~~ 231 (352)
+|++++..|..+ ....++.+++++|+++.+|. .+..++.| +.
T Consensus 184 ------------------------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------~~ 227 (306)
T 2z66_A 184 ------------------------------QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL------QV 227 (306)
T ss_dssp ------------------------------TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC------CE
T ss_pred ------------------------------CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC------CE
Confidence 333444434322 34567888999999997765 56666666 79
Q ss_pred hhhccccccccCCCchhhhh-HHhHhhhCCCCcce
Q psy5270 232 LDLTYNNLNEQSLPGNFFML-ETLRALYLGDNDFE 265 (352)
Q Consensus 232 L~ls~N~l~g~~iP~~~~~l-~~L~~L~Ls~N~l~ 265 (352)
||+++|++++ ..|..+..+ ++|++|+|++|.++
T Consensus 228 L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 228 LDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EECTTSCCCB-CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred eECCCCCCcc-cCHHHHHhhhccCCEEEccCCCee
Confidence 9999999998 788899988 58999999999998
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.5e-25 Score=229.86 Aligned_cols=272 Identities=21% Similarity=0.233 Sum_probs=176.0
Q ss_pred CCccEEEeeCCcCcc-cCccccCCCCCCEEEccCCcCc-cc-ccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEE
Q psy5270 2 LYITRITLSHNKLKE-IPPGLANLVNLEILTLFNNQIE-TL-PTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLD 77 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~-ip~~l~~l~~L~~L~L~~N~l~-~i-p~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~ 77 (352)
++|++|||++|.++. .|.+|+++++|++|+|++|.+. .+ |..|+++++|++|+|++|+++.+ |..|+++++|+.|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 578999999999995 4678999999999999999665 77 67899999999999999999955 77899999999999
Q ss_pred ccCCCCCCCCCCCc--cccCccCcEEEccCCccccc--hhhccCcccHHHHHHhcch------hhHhh---cCceEeecc
Q psy5270 78 LTYNNLNEQSLPGN--FFMLETLRALYLGDNDFEVL--PAEIGNLKNLQIILETFLP------DMMEK---NRGHIVGIS 144 (352)
Q Consensus 78 Ls~N~l~g~~~p~~--~~~l~~L~~L~l~~N~l~~i--p~~~~nl~~L~~L~l~~~p------~~~~~---~~g~i~~is 144 (352)
|++|.+++ .+|.. |+++++|++|++++|+++.+ ++.|+++++|+.|+++... ..+.. .......++
T Consensus 104 Ls~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred CcCCCCCc-ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999987 56665 88999999999999999844 4578999999888776521 11110 111111111
Q ss_pred cccc-------ccCCC------CccccccchhhhhhhhH-HhH-----------------------------------H-
Q psy5270 145 SMAG-------IVGLP------NLVPYCASKFAVRGLME-ALA-----------------------------------E- 174 (352)
Q Consensus 145 s~~~-------l~~lp------~l~~~~~s~~~l~~~~~-~l~-----------------------------------~- 174 (352)
.+.- +...+ .+.....+.+.+.+... .+. .
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 1000 00000 01111111111110000 000 0
Q ss_pred ---HHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhccccccccCCCchhh
Q psy5270 175 ---ELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF 249 (352)
Q Consensus 175 ---~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~ 249 (352)
.-...+++++|.+.+..|..+ ....++.+++++|+++.+ |..++.++.| +.|++++|.+++ ..|..|.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L------~~L~Ls~N~l~~-~~~~~~~ 335 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL------QVLNLSYNLLGE-LYSSNFY 335 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC------CEEEEESCCCSC-CCSCSCS
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC------CEEECCCCCCCc-cCHHHhc
Confidence 000122344555555544433 345566667777777644 4456666655 678888888876 5677788
Q ss_pred hhHHhHhhhCCCCcceecc-hhhhccccccccc
Q psy5270 250 MLETLRALYLGDNDFEVLP-AEIGNLKNLQIML 281 (352)
Q Consensus 250 ~l~~L~~L~Ls~N~l~~iP-~~l~~l~~L~~l~ 281 (352)
.+++|++|++++|+++.+| ..++++++|+.|.
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence 8888888888888887544 4477777777763
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=6.7e-25 Score=196.83 Aligned_cols=200 Identities=29% Similarity=0.364 Sum_probs=161.3
Q ss_pred CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCC-CCcc-ccccCCCCCCCEEE
Q psy5270 2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNR-LSSL-PRGFGAFPVLEVLD 77 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~-l~~i-p~~~~~l~~L~~L~ 77 (352)
++|++|++++|.++.+| ..|+++++|++|++++|.++.+ |..+..+++|++|++++|. ++.+ |..++.+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 57899999999999776 4699999999999999999966 7799999999999999997 8877 66799999999999
Q ss_pred ccCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcc
Q psy5270 78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 156 (352)
Q Consensus 78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~ 156 (352)
+++|++++ ..|..|.++++|++|++++|+++.+|. .++++++|+.++++
T Consensus 112 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~----------------------------- 161 (285)
T 1ozn_A 112 LDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH----------------------------- 161 (285)
T ss_dssp CTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----------------------------
T ss_pred CCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC-----------------------------
Confidence 99999997 568889999999999999999997765 47777766554332
Q ss_pred ccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCc-ccccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhh
Q psy5270 157 PYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF-MVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDL 234 (352)
Q Consensus 157 ~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~-~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~l 234 (352)
+|++++..+. +.....++.+++++|+++.+ |..++.++.| +.|++
T Consensus 162 ---------------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------~~L~l 208 (285)
T 1ozn_A 162 ---------------------------GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL------MTLYL 208 (285)
T ss_dssp ---------------------------SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC------CEEEC
T ss_pred ---------------------------CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc------cEeeC
Confidence 2333333332 22355677788888888854 6777777776 68888
Q ss_pred ccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270 235 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265 (352)
Q Consensus 235 s~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~ 265 (352)
++|++++ ..|..+..+++|++|++++|.+.
T Consensus 209 ~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 209 FANNLSA-LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence 8888886 34456888888888888888887
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.8e-24 Score=198.32 Aligned_cols=255 Identities=18% Similarity=0.215 Sum_probs=178.0
Q ss_pred eeCCcCcccCccccCC------CCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEccCC
Q psy5270 9 LSHNKLKEIPPGLANL------VNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 9 Ls~N~l~~ip~~l~~l------~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N 81 (352)
.+.+.++++|+.+... .+++.+++++|.++.+|..+. ++|+.|++++|+++.++ ..|+++++|++|++++|
T Consensus 11 ~~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 88 (332)
T 2ft3_A 11 SGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88 (332)
T ss_dssp --------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC
Confidence 3455666888776543 369999999999999998775 68999999999999775 47999999999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s 161 (352)
++++ ..|..|+++++|++|++++|+++.+|..+. ++|+.++++.. .+..+. ...+..++.+....
T Consensus 89 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n---------~i~~~~-~~~~~~l~~L~~L~-- 153 (332)
T 2ft3_A 89 KISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN---------RIRKVP-KGVFSGLRNMNCIE-- 153 (332)
T ss_dssp CCCE-ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSS---------CCCCCC-SGGGSSCSSCCEEE--
T ss_pred ccCc-cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCC---------ccCccC-HhHhCCCccCCEEE--
Confidence 9997 568899999999999999999999998766 56666555431 111110 11233344443332
Q ss_pred hhhhhhhhHHhHHHHHHHHhcCCceee--cccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccc
Q psy5270 162 KFAVRGLMEALAEELREDARNSKIKFT--SIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239 (352)
Q Consensus 162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~--g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l 239 (352)
+++|.++ +..|..+....++.++++.|+++.+|..+. +.| +.|++++|.+
T Consensus 154 --------------------l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L------~~L~l~~n~i 205 (332)
T 2ft3_A 154 --------------------MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETL------NELHLDHNKI 205 (332)
T ss_dssp --------------------CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSC------SCCBCCSSCC
T ss_pred --------------------CCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCC------CEEECCCCcC
Confidence 3345553 244444433377889999999999998764 455 7999999999
Q ss_pred cccCCCchhhhhHHhHhhhCCCCcceec-chhhhcccccccccCCce-----eeeccccccCCcccccccccccCCC
Q psy5270 240 NEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIMLEPRW-----VISMGSCANGGGYYHYSYSVVRGCD 310 (352)
Q Consensus 240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~~i-P~~l~~l~~L~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (352)
++ ..|..+..+++|++|+|++|+++.+ |..++.+++|+.+....+ |.....++... .++++.+.+.+.+
T Consensus 206 ~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~-~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 206 QA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ-VVYLHTNNITKVG 280 (332)
T ss_dssp CC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC-EEECCSSCCCBCC
T ss_pred Cc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCC-EEECCCCCCCccC
Confidence 97 5678899999999999999999955 457999999999854433 32333344332 5666677666553
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.2e-25 Score=213.76 Aligned_cols=80 Identities=31% Similarity=0.457 Sum_probs=44.2
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++|++||+++|.++.+|+ ++++++|++|++++|+++.+++ ++++++|++|++++|+++.+|+ ++++++|+.|++++|
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC
Confidence 455555555555555544 5555555555555555554444 5555555555555555555543 455555555555555
Q ss_pred CCC
Q psy5270 82 NLN 84 (352)
Q Consensus 82 ~l~ 84 (352)
.++
T Consensus 145 ~l~ 147 (466)
T 1o6v_A 145 TIS 147 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 544
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=5.8e-25 Score=209.32 Aligned_cols=242 Identities=23% Similarity=0.342 Sum_probs=167.3
Q ss_pred ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEccCC
Q psy5270 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N 81 (352)
...++.+++.++++|+++. +++++|+|++|+++.+ +..|.++++|++|+|++|+++.++ ..|.++++|+.|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4567777777888887765 4778888888888755 457788888888888888888665 45777888888888888
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 160 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~ 160 (352)
++++ ..+..|..+++|++|++++|+++.+|. .|.++++|+.|+++... .-..+. ...+..++.+....
T Consensus 123 ~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-----~l~~i~----~~~~~~l~~L~~L~- 191 (440)
T 3zyj_A 123 RLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-----RLSYIS----EGAFEGLSNLRYLN- 191 (440)
T ss_dssp CCSS-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----TCCEEC----TTTTTTCSSCCEEE-
T ss_pred cCCe-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-----CcceeC----cchhhcccccCeec-
Confidence 8875 334467778888888888888886655 67777777766554311 000110 11223334333322
Q ss_pred chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhccccc
Q psy5270 161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNL 239 (352)
Q Consensus 161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l 239 (352)
+++|+++. +|.......++.+++++|+++.+ |..+..++.| +.|++++|++
T Consensus 192 ---------------------L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------~~L~L~~n~l 243 (440)
T 3zyj_A 192 ---------------------LAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL------QKLWMIQSQI 243 (440)
T ss_dssp ---------------------CTTSCCSS-CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTC------CEEECTTCCC
T ss_pred ---------------------CCCCcCcc-ccccCCCcccCEEECCCCccCccChhhhccCccC------CEEECCCCce
Confidence 33444443 24444566778888999998855 6677777777 6899999999
Q ss_pred cccCCCchhhhhHHhHhhhCCCCcceecchh-hhcccccccccCCceee
Q psy5270 240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~-l~~l~~L~~l~~~~~~~ 287 (352)
++ ..|..|..+++|+.|+|++|+++.+|.. ++.+++|+.+....+|.
T Consensus 244 ~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 244 QV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CE-ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred eE-EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 87 5778888999999999999999966654 68888888886555554
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-25 Score=216.66 Aligned_cols=229 Identities=22% Similarity=0.221 Sum_probs=168.9
Q ss_pred CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
++|++|+|++|.++.+| ..|+++++|++|+|++|.++.+++ ++.+++|++|+|++|.++.+|.. ++|+.|++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 47999999999999665 689999999999999999996655 99999999999999999987754 7899999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhcchhhHhhcCceEeecccccccc-CCCCcccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV-GLPNLVPY 158 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~-~lp~l~~~ 158 (352)
|.+++ ..+. .+++|++|++++|+++.+ |..++++++|+.|+++.. ...+.++ ..+. .++.+..
T Consensus 109 N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~-----~~l~~~l~~L~~- 173 (487)
T 3oja_A 109 NNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-----EIDTVNF-----AELAASSDTLEH- 173 (487)
T ss_dssp SCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-----CCCEEEG-----GGGGGGTTTCCE-
T ss_pred CcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-----CCCCcCh-----HHHhhhCCcccE-
Confidence 99987 3332 457899999999999955 557888888887766641 1111110 1111 1233222
Q ss_pred ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238 (352)
Q Consensus 159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~ 238 (352)
+++++|.+++.. .......++.+++++|+++.+|..++.++.| +.||+++|.
T Consensus 174 ---------------------L~Ls~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L------~~L~Ls~N~ 225 (487)
T 3oja_A 174 ---------------------LNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV------TWISLRNNK 225 (487)
T ss_dssp ---------------------EECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTC------SEEECTTSC
T ss_pred ---------------------EecCCCcccccc-ccccCCCCCEEECCCCCCCCCCHhHcCCCCc------cEEEecCCc
Confidence 234456666553 2334566777888888888777766666666 688888888
Q ss_pred ccccCCCchhhhhHHhHhhhCCCCcce--ecchhhhcccccccc
Q psy5270 239 LNEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQIM 280 (352)
Q Consensus 239 l~g~~iP~~~~~l~~L~~L~Ls~N~l~--~iP~~l~~l~~L~~l 280 (352)
+++ +|..++.+++|+.|++++|.+. .+|..++.++.|+.+
T Consensus 226 l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 226 LVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp CCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred Ccc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 875 6777888888888888888887 677778877777765
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1e-25 Score=221.02 Aligned_cols=102 Identities=21% Similarity=0.371 Sum_probs=89.0
Q ss_pred CCCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc--ccccCCCCCCCEEE
Q psy5270 1 MLYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL--PRGFGAFPVLEVLD 77 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i--p~~~~~l~~L~~L~ 77 (352)
+++|++|++++|+++.+ |..|+++++|++|+|++|+++.+|.. .+++|++|++++|+++.+ |..|+++++|++|+
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152 (562)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence 57899999999999966 67799999999999999999999987 899999999999999965 47899999999999
Q ss_pred ccCCCCCCCCCCCccccCccC--cEEEccCCcc
Q psy5270 78 LTYNNLNEQSLPGNFFMLETL--RALYLGDNDF 108 (352)
Q Consensus 78 Ls~N~l~g~~~p~~~~~l~~L--~~L~l~~N~l 108 (352)
+++|++++ . .+..+++| ++|++++|++
T Consensus 153 L~~n~l~~-~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 153 LSAAKFRQ-L---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp EECSBCCT-T---TTGGGTTSCEEEEEEEESSC
T ss_pred cCCCcccc-C---chhhhhhceeeEEEeecccc
Confidence 99999975 2 35555555 8888888877
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.7e-24 Score=198.21 Aligned_cols=223 Identities=24% Similarity=0.336 Sum_probs=178.1
Q ss_pred CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEcc
Q psy5270 2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLT 79 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls 79 (352)
+.+++|++++|+++.+|+ .|+++++|++|++++|+++.+ |..++++++|++|++++|+++.+|..+. ++|+.|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 478999999999997776 799999999999999999966 8899999999999999999999998776 799999999
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCccc---cchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcc
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFE---VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 156 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~---~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~ 156 (352)
+|++++ ..+..|.++++|++|++++|+++ ..|..++++++|+.++++.. .+..+|...
T Consensus 130 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n------------------~l~~l~~~~ 190 (330)
T 1xku_A 130 ENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT------------------NITTIPQGL 190 (330)
T ss_dssp SSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS------------------CCCSCCSSC
T ss_pred CCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC------------------ccccCCccc
Confidence 999987 45567899999999999999997 34667888888887765541 111122111
Q ss_pred ccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCccc-CCCCCcccchhhhhhhhhh
Q psy5270 157 PYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPR-GFGAFPVLEAFSFTTILDL 234 (352)
Q Consensus 157 ~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~~~~~L~~L~l 234 (352)
.- .+ ..+++++|++++..|..+ ....++.+++++|+++.++. .++.++.| +.|++
T Consensus 191 ~~-----~L------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L 247 (330)
T 1xku_A 191 PP-----SL------------TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------RELHL 247 (330)
T ss_dssp CT-----TC------------SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC------CEEEC
T ss_pred cc-----cC------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC------CEEEC
Confidence 00 00 123456677777766544 55678889999999996654 56666666 79999
Q ss_pred ccccccccCCCchhhhhHHhHhhhCCCCcceecchh
Q psy5270 235 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 270 (352)
Q Consensus 235 s~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~ 270 (352)
++|+++ .+|..+..+++|++|++++|+++.+|..
T Consensus 248 ~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 248 NNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCCcCc--cCChhhccCCCcCEEECCCCcCCccChh
Confidence 999998 5899999999999999999999977654
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=4.6e-26 Score=207.68 Aligned_cols=230 Identities=22% Similarity=0.224 Sum_probs=170.1
Q ss_pred CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
++|++||+++|+++.++ ..|+++++|++|+|++|+++.+++ +..+++|++|++++|+++.+|.. ++|+.|++++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~----~~L~~L~l~~ 108 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCC----CCcCEEECCC
Confidence 57899999999999665 579999999999999999986655 89999999999999999977643 7899999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~ 159 (352)
|++++ ..+. .+++|++|++++|+++.+++ .++++++|++|+++.. . +..+........++.+..
T Consensus 109 n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-------~--l~~~~~~~~~~~l~~L~~-- 173 (317)
T 3o53_A 109 NNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-------E--IDTVNFAELAASSDTLEH-- 173 (317)
T ss_dssp SCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-------C--CCEEEGGGGGGGTTTCCE--
T ss_pred CccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-------C--CCcccHHHHhhccCcCCE--
Confidence 99986 3232 36789999999999996654 7788888887766641 1 111100000011222222
Q ss_pred cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccc
Q psy5270 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239 (352)
Q Consensus 160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l 239 (352)
+++++|.+++. |.......++.+++++|+++.+|..+..++.| +.|++++|++
T Consensus 174 --------------------L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L------~~L~L~~N~l 226 (317)
T 3o53_A 174 --------------------LNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV------TWISLRNNKL 226 (317)
T ss_dssp --------------------EECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTC------SEEECTTSCC
T ss_pred --------------------EECCCCcCccc-ccccccccCCEEECCCCcCCcchhhhcccCcc------cEEECcCCcc
Confidence 23445555555 33334567788888888888887777666666 6888888888
Q ss_pred cccCCCchhhhhHHhHhhhCCCCcce--ecchhhhcccccccc
Q psy5270 240 NEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQIM 280 (352)
Q Consensus 240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~--~iP~~l~~l~~L~~l 280 (352)
++ +|..+..+++|+.|++++|.++ .+|..++.+++|+.+
T Consensus 227 ~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 227 VL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 74 7888888888888899888888 678888888888876
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.6e-26 Score=208.84 Aligned_cols=197 Identities=25% Similarity=0.298 Sum_probs=133.3
Q ss_pred CCCccEEEeeCCcCc-ccCccc--cCCCCCCEEEccCCcCcccccccCCC-----CCCcEEEccCCCCCccc-cccCCCC
Q psy5270 1 MLYITRITLSHNKLK-EIPPGL--ANLVNLEILTLFNNQIETLPTSLSSL-----PKLRILNLGMNRLSSLP-RGFGAFP 71 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~-~ip~~l--~~l~~L~~L~L~~N~l~~ip~~l~~L-----~~L~~L~L~~N~l~~ip-~~~~~l~ 71 (352)
+++|++|++++|+++ .+|..+ +++++|++|+|++|+++.+|..++.+ ++|++|++++|+++.+| ..|++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 356778888888887 677765 77788888888888887667666666 77888888888887665 5677888
Q ss_pred CCCEEEccCCCCCCCC--CCCcc--ccCccCcEEEccCCccccchh---h-ccCcccHHHHHHhcchhhHhhcCceEeec
Q psy5270 72 VLEVLDLTYNNLNEQS--LPGNF--FMLETLRALYLGDNDFEVLPA---E-IGNLKNLQIILETFLPDMMEKNRGHIVGI 143 (352)
Q Consensus 72 ~L~~L~Ls~N~l~g~~--~p~~~--~~l~~L~~L~l~~N~l~~ip~---~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~i 143 (352)
+|+.|++++|++.| . +|..+ +++++|++|++++|+++.+|. . +.++++|+.|+
T Consensus 174 ~L~~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~------------------ 234 (312)
T 1wwl_A 174 ALSTLDLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD------------------ 234 (312)
T ss_dssp SCCEEECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE------------------
T ss_pred CCCEEECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE------------------
Confidence 88888888887765 3 23444 677788888888888774432 1 22333333222
Q ss_pred cccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccC--cccccCCccCcccccccCCCcccCCCCCc
Q psy5270 144 SSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFP--FMVDTGLCKNPKIKMNRLSSLPRGFGAFP 221 (352)
Q Consensus 144 ss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P--~~~~~~~l~~l~l~~n~l~~ip~~~~~l~ 221 (352)
+++|++++..| .......++.+++++|+++.+|..+. +
T Consensus 235 --------------------------------------Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~ 274 (312)
T 1wwl_A 235 --------------------------------------LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A 274 (312)
T ss_dssp --------------------------------------CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred --------------------------------------CCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence 23344444432 22234567777788888887777665 4
Q ss_pred ccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270 222 VLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265 (352)
Q Consensus 222 ~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~ 265 (352)
.| +.||+++|++++ +|. +..+++|++|+|++|.++
T Consensus 275 ~L------~~L~Ls~N~l~~--~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 275 KL------SVLDLSYNRLDR--NPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EE------EEEECCSSCCCS--CCC-TTTSCEEEEEECTTCTTT
T ss_pred Cc------eEEECCCCCCCC--Chh-HhhCCCCCEEeccCCCCC
Confidence 55 578888888875 465 777888888888888776
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=4.5e-25 Score=216.41 Aligned_cols=119 Identities=25% Similarity=0.332 Sum_probs=66.6
Q ss_pred CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L 78 (352)
++|++||+++|+++.+| ..|+++++|++|+|++|+++.+| ..|+++++|++|++++|+++.+|. .++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 45555555555555443 33555555666666666555442 455556666666666666655544 3566666666666
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccc-hhhccCccc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKN 120 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~ 120 (352)
++|.+++..+|..|+++++|++|++++|+++.+ |..++++++
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 666665434566666666666666666666533 234444333
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.1e-24 Score=194.42 Aligned_cols=199 Identities=25% Similarity=0.265 Sum_probs=129.3
Q ss_pred CccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEcc
Q psy5270 3 YITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLT 79 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls 79 (352)
+|++|++++|+++.+|+ .|+++++|++|++++|+++.+++ .+.++++|++|++++|+++.++ ..|+++++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 47777777777776554 67777777777777777775543 6777777777777777777554 457777777777777
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCcccc--chhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccc
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEV--LPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP 157 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~--ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~ 157 (352)
+|++++ ..+..++++++|++|++++|+++. +|..++++++|+.++++.
T Consensus 109 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~----------------------------- 158 (276)
T 2z62_A 109 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS----------------------------- 158 (276)
T ss_dssp TSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-----------------------------
T ss_pred CCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-----------------------------
Confidence 777775 334467777777777777777764 566777666666554432
Q ss_pred cccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCcc----CcccccccCCCcccCCCCCcccchhhhhhhh
Q psy5270 158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCK----NPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232 (352)
Q Consensus 158 ~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~----~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L 232 (352)
|+++++.+..+ ....++ .+++++|+++.+|........| +.|
T Consensus 159 ---------------------------N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L------~~L 205 (276)
T 2z62_A 159 ---------------------------NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL------KEL 205 (276)
T ss_dssp ---------------------------SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCE------EEE
T ss_pred ---------------------------CCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcc------cEE
Confidence 12222111111 111111 4567777777776655444445 678
Q ss_pred hhccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270 233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265 (352)
Q Consensus 233 ~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~ 265 (352)
++++|++++ ..+..+..+++|++|++++|.++
T Consensus 206 ~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 206 ALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBC
T ss_pred ECCCCceee-cCHhHhcccccccEEEccCCccc
Confidence 888888875 33444677888888888888887
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=3.2e-25 Score=212.66 Aligned_cols=261 Identities=21% Similarity=0.240 Sum_probs=162.2
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++++.|+++++.++.+|. +..+++|++|++++|.++.+|+ ++++++|++|++++|+++.+++ ++++++|+.|++++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 578999999999999885 8889999999999999998877 9999999999999999998887 999999999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcc----hhhHhhcCceEeecc-----ccccccCC
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFL----PDMMEKNRGHIVGIS-----SMAGIVGL 152 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~----p~~~~~~~g~i~~is-----s~~~l~~l 152 (352)
.+++ +|. ++++++|++|++++|+++.+|. ++++++|+.+.++.. +...........+++ ....+..+
T Consensus 123 ~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l 198 (466)
T 1o6v_A 123 QITD--IDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 198 (466)
T ss_dssp CCCC--CGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCCC--ChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccC
Confidence 9986 454 9999999999999999998764 777777776654320 000000001111111 01112222
Q ss_pred CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhh
Q psy5270 153 PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232 (352)
Q Consensus 153 p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L 232 (352)
+.+.....+.+.+.+........-...+++++|++.+. +.......++.+++++|+++.++. ++.++.| +.|
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L------~~L 270 (466)
T 1o6v_A 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKL------TEL 270 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTC------SEE
T ss_pred CCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCC------CEE
Confidence 33322222222222211100000001122333333332 222233344445555555554333 3333333 567
Q ss_pred hhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhccccccccc
Q psy5270 233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIML 281 (352)
Q Consensus 233 ~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~ 281 (352)
++++|.+++ +|. +..+++|+.|++++|+++.+|+ ++.+++|+.+.
T Consensus 271 ~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 315 (466)
T 1o6v_A 271 KLGANQISN--ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLT 315 (466)
T ss_dssp ECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEE
T ss_pred ECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEE
Confidence 777777764 333 6667777777777777775554 66667776664
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.6e-24 Score=217.08 Aligned_cols=278 Identities=18% Similarity=0.165 Sum_probs=196.4
Q ss_pred CCCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEE
Q psy5270 1 MLYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLD 77 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~ 77 (352)
+++|++||+++|.++.+ |..++++++|++|+|++|+++.+|+ .|+++++|++|++++|+++.+| ..|+++++|++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 46899999999999954 6678999999999999999998876 6999999999999999999876 5699999999999
Q ss_pred ccCCCCCCCCCCCccccCccCcEEEccCCccccchh-hcc--CcccHHHHHHhcc------hhhHhhcC-ceEeeccccc
Q psy5270 78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIG--NLKNLQIILETFL------PDMMEKNR-GHIVGISSMA 147 (352)
Q Consensus 78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~--nl~~L~~L~l~~~------p~~~~~~~-g~i~~iss~~ 147 (352)
+++|.+++ ..|..++++++|++|++++|+++.+++ .++ ++++|+.++++.. |....... .....+....
T Consensus 128 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 128 LSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred CCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 99999998 678889999999999999999996654 443 4577877777642 11111100 0000000000
Q ss_pred c----------ccCCCCccccccchhhhhhhhHHhHHHH----HHHHhcCCceeecccCccc-ccCCccCcccccccCCC
Q psy5270 148 G----------IVGLPNLVPYCASKFAVRGLMEALAEEL----REDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSS 212 (352)
Q Consensus 148 ~----------l~~lp~l~~~~~s~~~l~~~~~~l~~~l----~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ 212 (352)
. ....+.+.....+.+.+.+........+ ...+++++|++++..|..+ ....++.+++++|+++.
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 0 0011222223333332222111111111 1244677888888877644 56788899999999994
Q ss_pred -cccCCCCCcccchhhhhhhhhhcccccccc----CCCc----hhhhhHHhHhhhCCCCcce-ecchhhhcccccccccC
Q psy5270 213 -LPRGFGAFPVLEAFSFTTILDLTYNNLNEQ----SLPG----NFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLE 282 (352)
Q Consensus 213 -ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~----~iP~----~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~ 282 (352)
.|..++.++.| +.|++++|...+. .+|. .|..+++|++|++++|+++ ..|..++++++|+.+..
T Consensus 287 ~~~~~~~~l~~L------~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 287 LFSHSLHGLFNV------RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp ECTTTTTTCTTC------CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred cChhhhcCCCCc------cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 56678888877 6999998765531 2444 7889999999999999999 55667999999999865
Q ss_pred Cce
Q psy5270 283 PRW 285 (352)
Q Consensus 283 ~~~ 285 (352)
..+
T Consensus 361 s~n 363 (680)
T 1ziw_A 361 SNS 363 (680)
T ss_dssp TTC
T ss_pred CCC
Confidence 443
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3.2e-24 Score=205.07 Aligned_cols=116 Identities=24% Similarity=0.305 Sum_probs=91.7
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
+++|++|++++|+++.+| ++++++|++|++++|+++.+| ++++++|++|++++|+++.+| ++++++|+.|++++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR 136 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC
Confidence 468899999999998876 888899999999999988775 888899999999999988876 78888899999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCcc-ccchhhccCcccHHHHHHhc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQIILETF 128 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l-~~ip~~~~nl~~L~~L~l~~ 128 (352)
|++++ +| ++++++|++|++++|+. ..+ .++++++|+.++++.
T Consensus 137 N~l~~--l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 137 NTLTE--ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp SCCSC--CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred Cccce--ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 88886 33 67777777777777743 345 356666666665543
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2e-25 Score=215.15 Aligned_cols=212 Identities=19% Similarity=0.141 Sum_probs=173.4
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
+++|++|+|++|.++.+++ ++++++|++|+|++|.++.+|.. ++|++|++++|.++.+|.. .+++|+.|++++
T Consensus 57 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~ 129 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCS--RGQGKKNIYLAN 129 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEEEC--CCSSCEEEECCS
T ss_pred CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCCcc--ccCCCCEEECCC
Confidence 5789999999999996555 99999999999999999987653 8899999999999987763 568999999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCcccc-chhhcc-CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIG-NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~-ip~~~~-nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~ 158 (352)
|.+++ ..|..++++++|++|++++|+++. +|..++ ++++|+.|++++. .+.++ .....++.+..
T Consensus 130 N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N---------~l~~~---~~~~~l~~L~~- 195 (487)
T 3oja_A 130 NKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN---------FIYDV---KGQVVFAKLKT- 195 (487)
T ss_dssp SCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS---------CCCEE---ECCCCCTTCCE-
T ss_pred CCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC---------ccccc---cccccCCCCCE-
Confidence 99998 678899999999999999999994 677776 7888888877751 11111 11112333332
Q ss_pred ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238 (352)
Q Consensus 159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~ 238 (352)
+++++|.++++.|.+.....++.+++++|+++.+|..++.++.| +.|++++|.
T Consensus 196 ---------------------L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L------~~L~l~~N~ 248 (487)
T 3oja_A 196 ---------------------LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL------EHFDLRGNG 248 (487)
T ss_dssp ---------------------EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC------CEEECTTCC
T ss_pred ---------------------EECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCC------CEEEcCCCC
Confidence 34667888888777667788999999999999999998888887 699999999
Q ss_pred ccccCCCchhhhhHHhHhhhCC
Q psy5270 239 LNEQSLPGNFFMLETLRALYLG 260 (352)
Q Consensus 239 l~g~~iP~~~~~l~~L~~L~Ls 260 (352)
+..+.+|..++.++.|+.++++
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 9833789999999999999986
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=5.2e-25 Score=202.93 Aligned_cols=247 Identities=17% Similarity=0.256 Sum_probs=162.2
Q ss_pred ccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcE
Q psy5270 21 LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA 100 (352)
Q Consensus 21 l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~ 100 (352)
+..+++|++|++++|.+..+|. +..+++|++|++++|+++.+|. ++++++|++|++++|.+++ +| .+.++++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCE
Confidence 4567899999999999998875 8999999999999999999988 9999999999999999986 44 6999999999
Q ss_pred EEccCCccccchhhccCcccHHHHHHhcchh------hHhhcCceEeecc-----ccccccCCCCccccccchhhhhhhh
Q psy5270 101 LYLGDNDFEVLPAEIGNLKNLQIILETFLPD------MMEKNRGHIVGIS-----SMAGIVGLPNLVPYCASKFAVRGLM 169 (352)
Q Consensus 101 L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~------~~~~~~g~i~~is-----s~~~l~~lp~l~~~~~s~~~l~~~~ 169 (352)
|++++|+++.+|. +.++++|+.++++..+. ...........++ ....+..++.+.....+.+.+....
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc
Confidence 9999999998877 88888888887765321 0000011111111 1111233344433333333333221
Q ss_pred HHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhh
Q psy5270 170 EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF 249 (352)
Q Consensus 170 ~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~ 249 (352)
......-...+.++++.+.+..+ ......++.+++++|+++.+|. +..++.| +.|++++|.+++ + +.+.
T Consensus 194 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L------~~L~l~~n~l~~--~-~~~~ 262 (347)
T 4fmz_A 194 PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQL------TWLEIGTNQISD--I-NAVK 262 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCC--C-GGGT
T ss_pred cccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCC------CEEECCCCccCC--C-hhHh
Confidence 10000000122233444444333 3344556667777777776655 5555555 678888888764 3 4577
Q ss_pred hhHHhHhhhCCCCcceecchhhhcccccccccCCce
Q psy5270 250 MLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRW 285 (352)
Q Consensus 250 ~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~ 285 (352)
.+++|++|++++|+++.+| .++.+++|+.+....+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred cCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCC
Confidence 7888888888888887664 4777777777744433
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=5.1e-24 Score=202.83 Aligned_cols=220 Identities=22% Similarity=0.291 Sum_probs=169.0
Q ss_pred CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270 26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG 104 (352)
Q Consensus 26 ~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~ 104 (352)
..+.++.+++.++.+|..+. ++++.|+|++|+++.++ ..|+++++|+.|+|++|++++ ..|..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEECC
Confidence 46789999999999998776 68999999999999775 679999999999999999987 456789999999999999
Q ss_pred CCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcC
Q psy5270 105 DNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183 (352)
Q Consensus 105 ~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~ 183 (352)
+|+++.+|. .|.++++|+.|+++... +..+. ...+..++.+.....+.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~---------i~~~~-~~~~~~l~~L~~L~l~~~-------------------- 170 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNP---------IESIP-SYAFNRIPSLRRLDLGEL-------------------- 170 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCC---------CCEEC-TTTTTTCTTCCEEECCCC--------------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCc---------ccccC-HHHhhhCcccCEeCCCCC--------------------
Confidence 999998876 68999999888776511 11111 112333444433322210
Q ss_pred CceeecccCc-ccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCC
Q psy5270 184 KIKFTSIFPF-MVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN 262 (352)
Q Consensus 184 ~n~~~g~~P~-~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N 262 (352)
+.+..+.+. +.....++.+++++|+++.+|. +..++.| +.|||++|++++ ..|..|..+++|+.|+|++|
T Consensus 171 -~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L------~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 171 -KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKL------DELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp -TTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSC------CEEECTTSCCCE-ECTTTTTTCTTCCEEECTTC
T ss_pred -CCcceeCcchhhcccccCeecCCCCcCccccc-cCCCccc------CEEECCCCccCc-cChhhhccCccCCEEECCCC
Confidence 222223332 2256678889999999998884 5666666 799999999998 67999999999999999999
Q ss_pred cce-ecchhhhcccccccccCCceee
Q psy5270 263 DFE-VLPAEIGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 263 ~l~-~iP~~l~~l~~L~~l~~~~~~~ 287 (352)
+++ ..|..++++++|+.|+...+.+
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCC
Confidence 999 5566799999999986554433
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=6.6e-24 Score=202.74 Aligned_cols=219 Identities=21% Similarity=0.262 Sum_probs=168.2
Q ss_pred CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270 26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG 104 (352)
Q Consensus 26 ~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~ 104 (352)
....++.+++.++.+|..+. +++++|+|++|+++.+ |..|+++++|+.|+|++|++++ ..|..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECC
Confidence 46789999999999998765 6899999999999966 5679999999999999999997 567899999999999999
Q ss_pred CCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcC
Q psy5270 105 DNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183 (352)
Q Consensus 105 ~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~ 183 (352)
+|+++.+|. .++++++|++|+++... +..+. ...+..++.+.....+.+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~---------l~~~~-~~~~~~l~~L~~L~l~~~-------------------- 181 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNP---------IESIP-SYAFNRVPSLMRLDLGEL-------------------- 181 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCC---------CCEEC-TTTTTTCTTCCEEECCCC--------------------
T ss_pred CCcCCccChhhhcccCCCCEEECCCCC---------cceeC-HhHHhcCCcccEEeCCCC--------------------
Confidence 999998776 58889999988776511 11111 122334444433332210
Q ss_pred CceeecccCc-ccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCC
Q psy5270 184 KIKFTSIFPF-MVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN 262 (352)
Q Consensus 184 ~n~~~g~~P~-~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N 262 (352)
+.+..+.+. +.....++.+++++|+++.+|. +..++.| +.|+|++|.+++ ..|..|..+++|+.|+|++|
T Consensus 182 -~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L------~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 182 -KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGL------EELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp -TTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTC------CEEECTTSCCSE-ECGGGGTTCTTCCEEECTTS
T ss_pred -CCccccChhhccCCCCCCEEECCCCccccccc-ccccccc------cEEECcCCcCcc-cCcccccCccCCCEEEeCCC
Confidence 222222222 2245678889999999998874 5566666 799999999998 67899999999999999999
Q ss_pred cce-ecchhhhcccccccccCCcee
Q psy5270 263 DFE-VLPAEIGNLKNLQIMLEPRWV 286 (352)
Q Consensus 263 ~l~-~iP~~l~~l~~L~~l~~~~~~ 286 (352)
+++ ..|..++++++|+.|+..++.
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCceECHHHhcCCCCCCEEECCCCc
Confidence 999 557779999999998655443
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.7e-23 Score=186.34 Aligned_cols=197 Identities=30% Similarity=0.425 Sum_probs=147.5
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccC
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTY 80 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~ 80 (352)
..+.+++++++++.+|..+. +++++|++++|+++.+|+ .+.++++|++|++++|+++.+|.. |.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46789999999999998876 589999999999997765 899999999999999999998876 58899999999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~ 159 (352)
|++++ ..+..|.++++|++|++++|+++.+|+ .++++++|+.|+++.
T Consensus 95 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~------------------------------- 142 (270)
T 2o6q_A 95 NKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY------------------------------- 142 (270)
T ss_dssp SCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-------------------------------
T ss_pred CcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-------------------------------
Confidence 99987 445577899999999999999997665 466666665543332
Q ss_pred cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc-cccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhccc
Q psy5270 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYN 237 (352)
Q Consensus 160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~N 237 (352)
|+++++.+.. .....++.+++++|+++.+|.. +..++.| +.|++++|
T Consensus 143 -------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------~~L~L~~N 191 (270)
T 2o6q_A 143 -------------------------NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL------KTLKLDNN 191 (270)
T ss_dssp -------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC------CEEECCSS
T ss_pred -------------------------CcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc------CEEECCCC
Confidence 2222222221 1334556667777777766543 5555555 57777777
Q ss_pred cccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270 238 NLNEQSLPGNFFMLETLRALYLGDNDFE 265 (352)
Q Consensus 238 ~l~g~~iP~~~~~l~~L~~L~Ls~N~l~ 265 (352)
++++ ..+..+..+++|+.|+|++|.+.
T Consensus 192 ~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 192 QLKR-VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-CCHHHhccccCCCEEEecCCCee
Confidence 7765 33445667777777777777776
No 61
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.9e-24 Score=189.99 Aligned_cols=204 Identities=27% Similarity=0.329 Sum_probs=149.2
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEcc
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLT 79 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls 79 (352)
+++|+.|++++|.++.++ +++.+++|++|++++|.++.++ .++.+++|++|++++|+++.+|+. ++++++|+.|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 357889999999988766 4788899999999999998764 788999999999999999977665 7889999999999
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~ 158 (352)
+|++++ ..|..|+++++|++|++++|+++.+|+ .++++++|+.++++
T Consensus 118 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~------------------------------- 165 (272)
T 3rfs_A 118 ENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS------------------------------- 165 (272)
T ss_dssp TSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-------------------------------
T ss_pred CCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC-------------------------------
Confidence 999987 455668889999999999999997765 35666666544332
Q ss_pred ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc-cccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhcc
Q psy5270 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTY 236 (352)
Q Consensus 159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~ 236 (352)
+|++++..+.. .....++.+++++|+++.+|.. ++.++.| +.|++++
T Consensus 166 -------------------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------~~L~l~~ 214 (272)
T 3rfs_A 166 -------------------------YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL------QYIWLHD 214 (272)
T ss_dssp -------------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC------CEEECCS
T ss_pred -------------------------CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC------CEEEccC
Confidence 23333333332 1344566677777777755543 4555555 5777777
Q ss_pred ccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhccccc
Q psy5270 237 NNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNL 277 (352)
Q Consensus 237 N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L 277 (352)
|.+.+ ..| +|+.|+++.|+++ .+|.+++.+...
T Consensus 215 N~~~~-~~~-------~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 215 NPWDC-TCP-------GIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp SCBCC-CTT-------TTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred CCccc-cCc-------HHHHHHHHHHhCCCcccCcccccCCC
Confidence 77765 333 4677777777777 777777666544
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.9e-24 Score=196.17 Aligned_cols=196 Identities=23% Similarity=0.316 Sum_probs=155.2
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++|++|++++|.++.+| ++..+++|++|++++|+++.+++ +..+++|++|++++|+++.+| .++.+++|+.|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 57899999999999887 68889999999999999998877 999999999999999999886 5899999999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s 161 (352)
++++ +|. +..+++|++|++++|+++.+|. ++++++|+.|+++
T Consensus 118 ~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~---------------------------------- 159 (308)
T 1h6u_A 118 QITD--VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG---------------------------------- 159 (308)
T ss_dssp CCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC----------------------------------
T ss_pred CCCC--chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEcc----------------------------------
Confidence 9986 454 8899999999999999998776 6666666544332
Q ss_pred hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccc
Q psy5270 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241 (352)
Q Consensus 162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g 241 (352)
+|.+++..+ ......++.+++++|+++.+|. +..++.| +.|++++|++++
T Consensus 160 ----------------------~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L------~~L~L~~N~l~~ 209 (308)
T 1h6u_A 160 ----------------------NAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNL------IEVHLKNNQISD 209 (308)
T ss_dssp ----------------------SSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTC------CEEECTTSCCCB
T ss_pred ----------------------CCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCC------CEEEccCCccCc
Confidence 223333222 2344566778888888887765 4455555 789999999986
Q ss_pred cCCCchhhhhHHhHhhhCCCCcceecchhh
Q psy5270 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEI 271 (352)
Q Consensus 242 ~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l 271 (352)
+| .+..+++|+.|++++|.++..|..+
T Consensus 210 --~~-~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 210 --VS-PLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp --CG-GGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred --cc-cccCCCCCCEEEccCCeeecCCeee
Confidence 44 3888899999999999988766544
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.2e-24 Score=221.22 Aligned_cols=261 Identities=21% Similarity=0.192 Sum_probs=176.8
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCC-cc-ccccCCCCCCCEEEccCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS-SL-PRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~-~i-p~~~~~l~~L~~L~Ls~N 81 (352)
...|.++++++.||. -.+++++|||++|+++.+ |..|.++++|++|+|++|.+. .+ |..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 467899999999998 347899999999999955 789999999999999999655 77 677999999999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccc-cchhh--ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAE--IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~--~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~ 158 (352)
++++ ..|..|+++++|++|+|++|+++ .+|.. ++++++|+.|+++... +........+..++.+...
T Consensus 84 ~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~---------l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 84 KIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ---------IRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp CCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC---------CCCCCCCGGGGTCSSCCEE
T ss_pred cCcc-cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc---------ccccccchhHhhCCCCCEE
Confidence 9998 67999999999999999999999 46665 9999999999887521 1111111233445555444
Q ss_pred ccchhhhhhhhHHhHHHHH----HHHhcCCceeecccCcccc--------------------------------------
Q psy5270 159 CASKFAVRGLMEALAEELR----EDARNSKIKFTSIFPFMVD-------------------------------------- 196 (352)
Q Consensus 159 ~~s~~~l~~~~~~l~~~l~----~~~~~~~n~~~g~~P~~~~-------------------------------------- 196 (352)
..+.+.+.+........+. ..+.++.|.+.+..|..+.
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 4444443322111111110 1122333333332221110
Q ss_pred -------------------------------cCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhccccccccCC
Q psy5270 197 -------------------------------TGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNLNEQSL 244 (352)
Q Consensus 197 -------------------------------~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l~g~~i 244 (352)
...++.++++.|.++.+ |..++.++.| +.|++++|++++ ..
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L~~n~i~~-~~ 306 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL------KVLNLAYNKINK-IA 306 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCC------CEEEEESCCCCE-EC
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCC------CEEECCCCcCCC-CC
Confidence 01233344555555522 3444445544 678888888876 56
Q ss_pred CchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCce
Q psy5270 245 PGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRW 285 (352)
Q Consensus 245 P~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~ 285 (352)
|..|..+++|++|+|++|+++ ..|..++++++|+.+....+
T Consensus 307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 777888888888888888887 44667888888887754433
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=5.8e-24 Score=208.53 Aligned_cols=243 Identities=22% Similarity=0.230 Sum_probs=140.0
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++|+.|++++|.++++|+.+..+ +|++|++++|.++.+|. ..+++|+.|++++|.+...... +.+++|+.|++++|
T Consensus 282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n 357 (570)
T 2z63_A 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRN 357 (570)
T ss_dssp TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSS
T ss_pred CcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCC
Confidence 34555555555555555555555 55555555555555544 3455555555555555422111 45566666666666
Q ss_pred CCCCCCC--CCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270 82 NLNEQSL--PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159 (352)
Q Consensus 82 ~l~g~~~--p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~ 159 (352)
++++ .. |..+.++++|++|++++|+++.+|..++++++|+.++++. ..+........+..++.+..
T Consensus 358 ~l~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~~l~~L~~-- 425 (570)
T 2z63_A 358 GLSF-KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH---------SNLKQMSEFSVFLSLRNLIY-- 425 (570)
T ss_dssp CCBE-EEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT---------SEEESCTTSCTTTTCTTCCE--
T ss_pred ccCc-cccccccccccCccCEEECCCCccccccccccccCCCCEEEccC---------CccccccchhhhhcCCCCCE--
Confidence 6654 11 4555566666666666666665555555555555554432 11111111111222222221
Q ss_pred cchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCC--CcccCCCCCcccchhhhhhhhhhcc
Q psy5270 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLS--SLPRGFGAFPVLEAFSFTTILDLTY 236 (352)
Q Consensus 160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~--~ip~~~~~l~~L~~~~~L~~L~ls~ 236 (352)
++++++.+.+..|..+ ....++.+++++|+++ .+|..++.++.| +.|++++
T Consensus 426 --------------------L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L------~~L~l~~ 479 (570)
T 2z63_A 426 --------------------LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------TFLDLSQ 479 (570)
T ss_dssp --------------------EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC------CEEECTT
T ss_pred --------------------EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC------CEEECCC
Confidence 2344566666555443 4566777788888776 577777777776 5788888
Q ss_pred ccccccCCCchhhhhHHhHhhhCCCCcceecc-hhhhcccccccccCCceee
Q psy5270 237 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 237 N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP-~~l~~l~~L~~l~~~~~~~ 287 (352)
|++++ ..|..++.+++|++|++++|+++.+| ..++++++|+.+....++.
T Consensus 480 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 480 CQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp SCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred Ccccc-CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 88876 56778888888888888888888444 4577888888775555554
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.3e-24 Score=200.97 Aligned_cols=230 Identities=18% Similarity=0.237 Sum_probs=168.8
Q ss_pred CCCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCcccccc-cCCCCCCcEEEccCCCCCcccc--ccCCCCCCCEE
Q psy5270 1 MLYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPR--GFGAFPVLEVL 76 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~~-l~~L~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L 76 (352)
+++|++|++++|+++.+ |..|+++++|++|++++|+++.+|.. ++++++|++|++++|+++.+|. .++++++|+.|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 57899999999999966 56799999999999999999988775 8999999999999999999987 68999999999
Q ss_pred EccCCC-CCCCCCCCccccCccCcEEEccCCcccc-chhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCC
Q psy5270 77 DLTYNN-LNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPN 154 (352)
Q Consensus 77 ~Ls~N~-l~g~~~p~~~~~l~~L~~L~l~~N~l~~-ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~ 154 (352)
++++|+ +++ ..|..|+++++|++|++++|+++. .|..++++++|+.++++... +..+. ...+..++.
T Consensus 155 ~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~---------l~~~~-~~~~~~~~~ 223 (353)
T 2z80_A 155 RVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ---------HILLL-EIFVDVTSS 223 (353)
T ss_dssp EEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC---------STTHH-HHHHHHTTT
T ss_pred ECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc---------cccch-hhhhhhccc
Confidence 999995 655 456789999999999999999995 47899999988887665411 00000 000001122
Q ss_pred ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc----ccCCccCcccccccC-----CCcccCCCCCcccch
Q psy5270 155 LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV----DTGLCKNPKIKMNRL-----SSLPRGFGAFPVLEA 225 (352)
Q Consensus 155 l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~----~~~~l~~l~l~~n~l-----~~ip~~~~~l~~L~~ 225 (352)
+.. +++++|.+++..+..+ ....+..++++.+.+ ..+|..++.++.|
T Consensus 224 L~~----------------------L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L-- 279 (353)
T 2z80_A 224 VEC----------------------LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL-- 279 (353)
T ss_dssp EEE----------------------EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC--
T ss_pred ccE----------------------EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC--
Confidence 221 2233444444332211 112233344444444 4578777777777
Q ss_pred hhhhhhhhhccccccccCCCch-hhhhHHhHhhhCCCCcceecchhh
Q psy5270 226 FSFTTILDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPAEI 271 (352)
Q Consensus 226 ~~~L~~L~ls~N~l~g~~iP~~-~~~l~~L~~L~Ls~N~l~~iP~~l 271 (352)
+.||+++|+++ .+|.. |+.+++|++|+|++|.++.-++.+
T Consensus 280 ----~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 280 ----LELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp ----CEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ----CEEECCCCCCC--ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 79999999998 47877 589999999999999999443333
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1e-23 Score=184.17 Aligned_cols=197 Identities=19% Similarity=0.224 Sum_probs=121.4
Q ss_pred CcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCC-CCcccc-ccCCCCCCCEEEccC-CCCCCCCCC
Q psy5270 14 LKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNR-LSSLPR-GFGAFPVLEVLDLTY-NNLNEQSLP 89 (352)
Q Consensus 14 l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~-l~~ip~-~~~~l~~L~~L~Ls~-N~l~g~~~p 89 (352)
++++|. +.. +|++|++++|+++.+|+ .++++++|++|++++|+ ++.+|+ .|+++++|+.|++++ |++++ ..+
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDP 98 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECT
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCH
Confidence 556666 433 66666666666665544 56666666666666665 666654 466666666666666 66664 233
Q ss_pred CccccCccCcEEEccCCccccchhhccCcccHH---HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhh
Q psy5270 90 GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ---IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVR 166 (352)
Q Consensus 90 ~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~---~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~ 166 (352)
..|.++++|++|++++|+++.+|. ++++++|+ .++++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~--------------------------------------- 138 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT--------------------------------------- 138 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE---------------------------------------
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECC---------------------------------------
Confidence 456666666666666666666665 55544443 22111
Q ss_pred hhhHHhHHHHHHHHhcCCc-eeecccCcc-cccCCcc-CcccccccCCCcccCCCCCcccchhhhhhhhhhccc-ccccc
Q psy5270 167 GLMEALAEELREDARNSKI-KFTSIFPFM-VDTGLCK-NPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYN-NLNEQ 242 (352)
Q Consensus 167 ~~~~~l~~~l~~~~~~~~n-~~~g~~P~~-~~~~~l~-~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N-~l~g~ 242 (352)
+| ++.++.+.. .....++ .+++++|+++.+|......+.| +.|++++| ++++
T Consensus 139 -----------------~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L------~~L~L~~n~~l~~- 194 (239)
T 2xwt_C 139 -----------------DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL------DAVYLNKNKYLTV- 194 (239)
T ss_dssp -----------------SCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEE------EEEECTTCTTCCE-
T ss_pred -----------------CCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCC------CEEEcCCCCCccc-
Confidence 12 222222221 1234455 6677788888887764444555 68999999 4875
Q ss_pred CCCchhhhh-HHhHhhhCCCCcceecchhhhcccccccc
Q psy5270 243 SLPGNFFML-ETLRALYLGDNDFEVLPAEIGNLKNLQIM 280 (352)
Q Consensus 243 ~iP~~~~~l-~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l 280 (352)
..|..|..+ ++|+.|++++|+++.+|.. .+++|+.|
T Consensus 195 i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L 231 (239)
T 2xwt_C 195 IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKEL 231 (239)
T ss_dssp ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEE
T ss_pred CCHHHhhccccCCcEEECCCCccccCChh--HhccCcee
Confidence 345678888 8999999999999988775 34444443
No 67
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.89 E-value=1.7e-23 Score=204.14 Aligned_cols=196 Identities=22% Similarity=0.328 Sum_probs=158.7
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN 82 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~ 82 (352)
+|+.|++++|+++.||..+. ++|++|+|++|+++.+| ..+++|++|++++|+|+.||. +++ +|+.|++++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 78999999999999999875 78999999999999999 568999999999999999998 776 99999999999
Q ss_pred CCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccch
Q psy5270 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162 (352)
Q Consensus 83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~ 162 (352)
+++ +|. .+++|++|++++|+++.+|. .+++|+.|+
T Consensus 132 l~~--lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~------------------------------------- 166 (571)
T 3cvr_A 132 LTM--LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLS------------------------------------- 166 (571)
T ss_dssp CSC--CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEE-------------------------------------
T ss_pred CCC--CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEE-------------------------------------
Confidence 987 787 68999999999999999887 334443332
Q ss_pred hhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCccc-chhhhhhhhhhccccccc
Q psy5270 163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVL-EAFSFTTILDLTYNNLNE 241 (352)
Q Consensus 163 ~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L-~~~~~L~~L~ls~N~l~g 241 (352)
+++|++++ +|. +. ..++.+++++|+++.+|. +.. .| .....++.|+|++|+++
T Consensus 167 -------------------Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 167 -------------------VRNNQLTF-LPE-LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp -------------------CCSSCCSC-CCC-CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-
T ss_pred -------------------CCCCCCCC-cch-hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-
Confidence 23444544 233 22 567888999999999998 554 33 11122368999999998
Q ss_pred cCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccc
Q psy5270 242 QSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQ 278 (352)
Q Consensus 242 ~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~ 278 (352)
.||..++.+++|++|+|++|.|+ .+|..++++....
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~ 257 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSC
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCc
Confidence 58999999999999999999999 8999998887643
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=6.3e-24 Score=192.91 Aligned_cols=218 Identities=18% Similarity=0.115 Sum_probs=118.7
Q ss_pred ccEEEeeCCcCc--ccCc--cccCCCCCCEEEccCCcCc-cccccc--CCCCCCcEEEccCCCCCc-cc----cccCCCC
Q psy5270 4 ITRITLSHNKLK--EIPP--GLANLVNLEILTLFNNQIE-TLPTSL--SSLPKLRILNLGMNRLSS-LP----RGFGAFP 71 (352)
Q Consensus 4 L~~L~Ls~N~l~--~ip~--~l~~l~~L~~L~L~~N~l~-~ip~~l--~~L~~L~~L~L~~N~l~~-ip----~~~~~l~ 71 (352)
++.+++.++.++ .+.. .+..+++|++|++++|.++ .+|..+ +.+++|++|++++|+++. +| ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 455666666654 2221 1122355777777777776 455555 667777777777777763 22 2345666
Q ss_pred CCCEEEccCCCCCCCCCCCccccCccCcEEEccCCcccc---chhh--ccCcccHHHHHHhcchhhHhhcCceEeecccc
Q psy5270 72 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV---LPAE--IGNLKNLQIILETFLPDMMEKNRGHIVGISSM 146 (352)
Q Consensus 72 ~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~---ip~~--~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~ 146 (352)
+|++|++++|++++ ..|..|+++++|++|++++|++.. ++.. ++++++|++|+++.
T Consensus 146 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~------------------ 206 (310)
T 4glp_A 146 GLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN------------------ 206 (310)
T ss_dssp CCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS------------------
T ss_pred CCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC------------------
Confidence 77777777777765 455667777777777777777652 3332 24555555443332
Q ss_pred ccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCc-ccCCCCCcccch
Q psy5270 147 AGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEA 225 (352)
Q Consensus 147 ~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~ 225 (352)
+.+..+.. ....+ ......++.+++++|+++.+ |..++.+..+
T Consensus 207 ----------------N~l~~l~~-~~~~l-----------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~-- 250 (310)
T 4glp_A 207 ----------------TGMETPTG-VCAAL-----------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWS-- 250 (310)
T ss_dssp ----------------SCCCCHHH-HHHHH-----------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCC--
T ss_pred ----------------CCCCchHH-HHHHH-----------------HhcCCCCCEEECCCCCCCccchhhHHhccCc--
Confidence 00000000 00000 01223456666666766643 6655554211
Q ss_pred hhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccC
Q psy5270 226 FSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLE 282 (352)
Q Consensus 226 ~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~ 282 (352)
+.|+.|++++|+++ .+|..+. ++|++|||++|+++.+|. +..+++|+.+..
T Consensus 251 -~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 251 -SALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTL 301 (310)
T ss_dssp -TTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEEC
T ss_pred -CcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEEC
Confidence 12256777777776 3566654 567777777777765544 455566665533
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=4.9e-24 Score=203.61 Aligned_cols=114 Identities=32% Similarity=0.502 Sum_probs=59.7
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN 82 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~ 82 (352)
+|++|++++|+++.+| +++++++|++|++++|+++.+|..+ .+|++|++++|+++.+| +++++++|+.|++++|+
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence 4555555555555555 3555555555555555555544432 24555555555555554 35555555555555555
Q ss_pred CCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHh
Q psy5270 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILET 127 (352)
Q Consensus 83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~ 127 (352)
+++ +|... ++|++|++++|+++.+| .++++++|+.++++
T Consensus 207 l~~--l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 207 LKK--LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp CSS--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCc--CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECC
Confidence 553 34322 34555555555555555 25555555555544
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.2e-22 Score=180.83 Aligned_cols=177 Identities=28% Similarity=0.402 Sum_probs=144.9
Q ss_pred CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCcccccc-cCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~~-l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L 78 (352)
+++++|++++|+++.+|+ .|+++++|++|++++|+++.+|.. +..+++|++|++++|+++.+|.. |+++++|+.|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 368999999999998775 799999999999999999988764 58899999999999999988764 789999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP 157 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~ 157 (352)
++|++++ ..|..|+++++|++|++++|+++.+|.. ++++++|+.++++
T Consensus 117 ~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~------------------------------ 165 (270)
T 2o6q_A 117 DRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY------------------------------ 165 (270)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC------------------------------
T ss_pred CCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec------------------------------
Confidence 9999997 5566789999999999999999988764 6777777654433
Q ss_pred cccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhc
Q psy5270 158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLT 235 (352)
Q Consensus 158 ~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls 235 (352)
+|+++++.+..+ ....++.+++++|+++.+|.. +..++.| +.|+++
T Consensus 166 --------------------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------~~L~l~ 213 (270)
T 2o6q_A 166 --------------------------NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL------KMLQLQ 213 (270)
T ss_dssp --------------------------SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC------CEEECC
T ss_pred --------------------------CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC------CEEEec
Confidence 233333333322 345678889999999988764 6666666 799999
Q ss_pred cccccc
Q psy5270 236 YNNLNE 241 (352)
Q Consensus 236 ~N~l~g 241 (352)
+|.+..
T Consensus 214 ~N~~~c 219 (270)
T 2o6q_A 214 ENPWDC 219 (270)
T ss_dssp SSCBCC
T ss_pred CCCeeC
Confidence 999976
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1.8e-23 Score=186.56 Aligned_cols=223 Identities=22% Similarity=0.290 Sum_probs=172.0
Q ss_pred EEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCC
Q psy5270 6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNL 83 (352)
Q Consensus 6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l 83 (352)
..+.++..++++|..+. ++|++|++++|+++.+++ .+.++++|++|++++|+++.++. .|+++++|+.|++++|++
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 56778888889999875 489999999999997765 89999999999999999997765 699999999999999999
Q ss_pred CCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccch
Q psy5270 84 NEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162 (352)
Q Consensus 84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~ 162 (352)
++ ..|..|.++++|++|++++|+++.++. .++++++|+.++++.
T Consensus 89 ~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------------------- 133 (276)
T 2z62_A 89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH---------------------------------- 133 (276)
T ss_dssp CE-ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS----------------------------------
T ss_pred Cc-cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC----------------------------------
Confidence 87 566889999999999999999997765 677777776654432
Q ss_pred hhhhhhhHHhHHHHHHHHhcCCceeecc-cCcc-cccCCccCcccccccCCCccc-CCCCCcccchhhhhh-hhhhcccc
Q psy5270 163 FAVRGLMEALAEELREDARNSKIKFTSI-FPFM-VDTGLCKNPKIKMNRLSSLPR-GFGAFPVLEAFSFTT-ILDLTYNN 238 (352)
Q Consensus 163 ~~l~~~~~~l~~~l~~~~~~~~n~~~g~-~P~~-~~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~~~~~L~-~L~ls~N~ 238 (352)
|.+.+. +|.. .....++.+++++|+++.+|. .+..+..+ ..+. .|++++|.
T Consensus 134 ----------------------n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---~~l~l~L~ls~n~ 188 (276)
T 2z62_A 134 ----------------------NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM---PLLNLSLDLSLNP 188 (276)
T ss_dssp ----------------------SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC---TTCCEEEECCSSC
T ss_pred ----------------------CccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc---cccceeeecCCCc
Confidence 222221 1222 245677888999999997654 33333333 1112 78999999
Q ss_pred ccccCCCchhhhhHHhHhhhCCCCcceecchh-hhcccccccccCCceeeeccccc
Q psy5270 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLEPRWVISMGSCA 293 (352)
Q Consensus 239 l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~-l~~l~~L~~l~~~~~~~~~~~~~ 293 (352)
+++ +|.......+|+.|+|++|+++.+|.+ ++++++|+.+....+++. ..|+
T Consensus 189 l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~-c~c~ 241 (276)
T 2z62_A 189 MNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD-CSCP 241 (276)
T ss_dssp CCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC-CCTT
T ss_pred ccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc-ccCC
Confidence 986 565555556899999999999977765 688999999876666654 3343
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=2.3e-23 Score=205.38 Aligned_cols=99 Identities=28% Similarity=0.421 Sum_probs=61.1
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN 82 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~ 82 (352)
+++.|++++|.++.+|..+. ++|++|++++|.++.+|. .+++|++|+|++|+++.+|. .+++|+.|++++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 35667777777776666655 566777777776666665 45666666666666666665 45566666666666
Q ss_pred CCCCCCCCccccCccCcEEEccCCccccchhh
Q psy5270 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 114 (352)
Q Consensus 83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~ 114 (352)
+++ +|. .+++|+.|++++|+++.+|..
T Consensus 113 l~~--l~~---~l~~L~~L~L~~N~l~~lp~~ 139 (622)
T 3g06_A 113 LTH--LPA---LPSGLCKLWIFGNQLTSLPVL 139 (622)
T ss_dssp CCC--CCC---CCTTCCEEECCSSCCSCCCCC
T ss_pred CCC--CCC---CCCCcCEEECCCCCCCcCCCC
Confidence 654 444 345555555555555555543
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.6e-22 Score=180.57 Aligned_cols=176 Identities=26% Similarity=0.297 Sum_probs=147.7
Q ss_pred CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
++++.|++++|+++.+ |..|.++++|++|+|++|.++.+|.. +.+++|+.|++++|+++.+|..++.+++|+.|++++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 4789999999999955 56799999999999999999988765 889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~ 159 (352)
|++++ ..|..|.++++|++|++++|+++.+|+ .+..+++|+.|+++
T Consensus 110 N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-------------------------------- 156 (290)
T 1p9a_G 110 NRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-------------------------------- 156 (290)
T ss_dssp SCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT--------------------------------
T ss_pred CcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC--------------------------------
Confidence 99997 445789999999999999999998776 45667666654433
Q ss_pred cchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238 (352)
Q Consensus 160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~ 238 (352)
+|+++++.+..+ ....++.+++++|+++.+|..+.....| +.+++++|.
T Consensus 157 ------------------------~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L------~~l~L~~Np 206 (290)
T 1p9a_G 157 ------------------------NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL------PFAFLHGNP 206 (290)
T ss_dssp ------------------------TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCC------SEEECCSCC
T ss_pred ------------------------CCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccC------CeEEeCCCC
Confidence 344444444332 3567788999999999999998887777 699999999
Q ss_pred ccc
Q psy5270 239 LNE 241 (352)
Q Consensus 239 l~g 241 (352)
+..
T Consensus 207 ~~C 209 (290)
T 1p9a_G 207 WLC 209 (290)
T ss_dssp BCC
T ss_pred ccC
Confidence 974
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=5.3e-23 Score=203.74 Aligned_cols=120 Identities=24% Similarity=0.331 Sum_probs=106.1
Q ss_pred EEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCC
Q psy5270 6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNL 83 (352)
Q Consensus 6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l 83 (352)
..|.++-++++||+.+. +++++|||++|+++.+|+ +|.++++|++|+|++|+++.||+ .|+++++|++|+|++|++
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 45677778999998875 489999999999998864 89999999999999999999876 589999999999999999
Q ss_pred CCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhc
Q psy5270 84 NEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETF 128 (352)
Q Consensus 84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~ 128 (352)
++ ..|..|.++++|++|++++|+++.+|+ .|+++++|++|+++.
T Consensus 113 ~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 113 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp CE-ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CC-CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc
Confidence 87 334578999999999999999998876 689999999998765
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=3e-23 Score=198.10 Aligned_cols=241 Identities=25% Similarity=0.283 Sum_probs=150.8
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
+++|++|++++|+++.+|+.+ .+|++|++++|+++.+| .++++++|++|++++|+++.+|... ++|+.|++++
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGN 224 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCS
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcC
Confidence 468999999999999888765 47999999999999887 6899999999999999999887654 5789999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 160 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~ 160 (352)
|+++. +|. ++.+++|++|++++|+++.+|..+ .+|+.++++... +..+.. ..+.+.....
T Consensus 225 n~l~~--lp~-~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~N~---------l~~l~~-----~~~~L~~L~l 284 (454)
T 1jl5_A 225 NILEE--LPE-LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNY---------LTDLPE-----LPQSLTFLDV 284 (454)
T ss_dssp SCCSS--CCC-CTTCTTCCEEECCSSCCSSCCSCC---TTCCEEECCSSC---------CSCCCC-----CCTTCCEEEC
T ss_pred CcCCc--ccc-cCCCCCCCEEECCCCcCCcccccc---cccCEEECCCCc---------ccccCc-----ccCcCCEEEC
Confidence 99874 774 888999999999999998887654 344444443310 000000 0122222222
Q ss_pred chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccccc
Q psy5270 161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLN 240 (352)
Q Consensus 161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~ 240 (352)
+.+.+.++.. .+.. ...+++++|+++++.. ....++.+++++|+++.+|..+ +.| +.|++++|+++
T Consensus 285 s~N~l~~l~~-~~~~-L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~~---~~L------~~L~L~~N~l~ 350 (454)
T 1jl5_A 285 SENIFSGLSE-LPPN-LYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPALP---PRL------ERLIASFNHLA 350 (454)
T ss_dssp CSSCCSEESC-CCTT-CCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCCC---TTC------CEEECCSSCCS
T ss_pred cCCccCcccC-cCCc-CCEEECcCCcCCcccC---CcCcCCEEECCCCccccccccC---CcC------CEEECCCCccc
Confidence 2222222100 0000 0123345565555321 1135677788888888777653 334 67888888887
Q ss_pred ccCCCchhhhhHHhHhhhCCCCccee---cchhhhcc-------------cccccccCCceee
Q psy5270 241 EQSLPGNFFMLETLRALYLGDNDFEV---LPAEIGNL-------------KNLQIMLEPRWVI 287 (352)
Q Consensus 241 g~~iP~~~~~l~~L~~L~Ls~N~l~~---iP~~l~~l-------------~~L~~l~~~~~~~ 287 (352)
+ +|. .+++|++|++++|+++. +|.+++++ ++|+.++...+..
T Consensus 351 ~--lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 351 E--VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp C--CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred c--ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 3 676 46788888888888873 67777777 6677775554443
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1.6e-23 Score=190.89 Aligned_cols=217 Identities=18% Similarity=0.138 Sum_probs=172.8
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
+++|++|++++|+++.+++ ++++++|++|++++|+++.+|. .++|++|++++|+++.++.. .+++|+.|++++
T Consensus 57 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~ 129 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLAN 129 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCS
T ss_pred CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCC
Confidence 5789999999999996665 8999999999999999997764 38999999999999977654 478899999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccc-hhhc-cCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~-~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~ 158 (352)
|++++ ..|..++.+++|++|++++|+++.+ |..+ .++++|++++++.. .+..+ .....++.+..
T Consensus 130 N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N---------~l~~~---~~~~~l~~L~~- 195 (317)
T 3o53_A 130 NKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN---------FIYDV---KGQVVFAKLKT- 195 (317)
T ss_dssp SCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS---------CCCEE---ECCCCCTTCCE-
T ss_pred CCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC---------cCccc---ccccccccCCE-
Confidence 99997 5677899999999999999999954 4555 46788888777651 11111 11112333322
Q ss_pred ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238 (352)
Q Consensus 159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~ 238 (352)
+++++|+++++.+.+.....++.+++++|+++.+|..+..++.| +.|++++|.
T Consensus 196 ---------------------L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L------~~L~l~~N~ 248 (317)
T 3o53_A 196 ---------------------LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL------EHFDLRGNG 248 (317)
T ss_dssp ---------------------EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC------CEEECTTCC
T ss_pred ---------------------EECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCC------CEEEccCCC
Confidence 34567788877776667788999999999999999988888887 799999999
Q ss_pred ccccCCCchhhhhHHhHhhhCCCCc-ce
Q psy5270 239 LNEQSLPGNFFMLETLRALYLGDND-FE 265 (352)
Q Consensus 239 l~g~~iP~~~~~l~~L~~L~Ls~N~-l~ 265 (352)
++...+|..++.+++|+.+++++|. ++
T Consensus 249 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHhccccceEEECCCchhcc
Confidence 9932789999999999999988443 44
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1e-21 Score=172.86 Aligned_cols=175 Identities=31% Similarity=0.461 Sum_probs=146.3
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccC
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTY 80 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~ 80 (352)
..+++|++++.++.+|..+. +++++|+|++|.++.+ |..++++++|++|++++|+++.+++ .|.++++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46789999999999999886 5899999999999966 5579999999999999999997655 589999999999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~ 159 (352)
|++++ ..|..|..+++|++|++++|+++.+|+. ++++++|
T Consensus 93 n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------------------------------- 133 (251)
T 3m19_A 93 NQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL-------------------------------------- 133 (251)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred Ccccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc--------------------------------------
Confidence 99997 4567789999999999999999977753 3443332
Q ss_pred cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCccc-CCCCCcccchhhhhhhhhhcccc
Q psy5270 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPR-GFGAFPVLEAFSFTTILDLTYNN 238 (352)
Q Consensus 160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~~~~~L~~L~ls~N~ 238 (352)
+.+++++|+++.+|. .++.++.| +.|+|++|+
T Consensus 134 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L------~~L~L~~N~ 166 (251)
T 3m19_A 134 -----------------------------------------KELRLNTNQLQSIPAGAFDKLTNL------QTLSLSTNQ 166 (251)
T ss_dssp -----------------------------------------CEEECCSSCCCCCCTTTTTTCTTC------CEEECCSSC
T ss_pred -----------------------------------------cEEECcCCcCCccCHHHcCcCcCC------CEEECCCCc
Confidence 345567777877766 46677777 799999999
Q ss_pred ccccCCCchhhhhHHhHhhhCCCCccee
Q psy5270 239 LNEQSLPGNFFMLETLRALYLGDNDFEV 266 (352)
Q Consensus 239 l~g~~iP~~~~~l~~L~~L~Ls~N~l~~ 266 (352)
+++ ..|..+..+++|++|+|++|.++.
T Consensus 167 l~~-~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 167 LQS-VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSC-CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCc-cCHHHHhCCCCCCEEEeeCCceeC
Confidence 987 556688999999999999999983
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1.2e-21 Score=193.28 Aligned_cols=105 Identities=30% Similarity=0.329 Sum_probs=83.0
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++|++|++++|+|+.||. .+++|++|+|++|+++.+|. .+++|++|++++|+++.+|. .+++|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 468889999999988887 56789999999999888887 67888889999998888877 5677888888888
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchhhccCccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~ 120 (352)
++++ +|.. +++|++|++++|+++.+|..+.+++.
T Consensus 132 ~l~~--lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~ 165 (622)
T 3g06_A 132 QLTS--LPVL---PPGLQELSVSDNQLASLPALPSELCK 165 (622)
T ss_dssp CCSC--CCCC---CTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred CCCc--CCCC---CCCCCEEECcCCcCCCcCCccCCCCE
Confidence 8875 6664 37788888888888877665544433
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.3e-21 Score=174.24 Aligned_cols=184 Identities=26% Similarity=0.281 Sum_probs=148.8
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL 78 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L 78 (352)
+++|++|++++|.++.++ .++++++|++|++++|.++.+|+ .++.+++|++|++++|+++.+|+. |+++++|+.|++
T Consensus 62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 578999999999999865 78999999999999999997755 579999999999999999987765 799999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP 157 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~ 157 (352)
++|++++ ..|..++++++|++|++++|+++.+|+ .++++++|+.++++
T Consensus 141 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~------------------------------ 189 (272)
T 3rfs_A 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY------------------------------ 189 (272)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC------------------------------
T ss_pred CCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC------------------------------
Confidence 9999997 455668899999999999999997765 46777777654333
Q ss_pred cccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc-cccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcc
Q psy5270 158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY 236 (352)
Q Consensus 158 ~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~ 236 (352)
+|++++..|.. .....++.+++++|.+. +.++.+ +.++++.
T Consensus 190 --------------------------~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l------~~l~~~~ 231 (272)
T 3rfs_A 190 --------------------------QNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGI------RYLSEWI 231 (272)
T ss_dssp --------------------------SSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTT------HHHHHHH
T ss_pred --------------------------CCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHH------HHHHHHH
Confidence 34444444432 24556778889999876 334445 7899999
Q ss_pred ccccccCCCchhhhhHHhH
Q psy5270 237 NNLNEQSLPGNFFMLETLR 255 (352)
Q Consensus 237 N~l~g~~iP~~~~~l~~L~ 255 (352)
|+++| .+|.+++.+....
T Consensus 232 n~~~g-~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 232 NKHSG-VVRNSAGSVAPDS 249 (272)
T ss_dssp HHTGG-GBBCTTSCBCGGG
T ss_pred HhCCC-cccCcccccCCCC
Confidence 99999 8999988776543
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.2e-22 Score=180.10 Aligned_cols=204 Identities=20% Similarity=0.283 Sum_probs=162.0
Q ss_pred eeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCC
Q psy5270 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSL 88 (352)
Q Consensus 9 Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~ 88 (352)
+..+.++.+. .+..+++|++|++++|.++.+| .+..+++|++|++++|+++.+++ ++.+++|+.|++++|++++ +
T Consensus 26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~--~ 100 (308)
T 1h6u_A 26 AGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN--V 100 (308)
T ss_dssp TTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC--C
T ss_pred hCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC--c
Confidence 3444444321 2346788999999999999887 68999999999999999999988 9999999999999999986 4
Q ss_pred CCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhh
Q psy5270 89 PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168 (352)
Q Consensus 89 p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~ 168 (352)
| .++.+++|++|++++|+++.+|. ++++++|+.|+++.
T Consensus 101 ~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~---------------------------------------- 138 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL---------------------------------------- 138 (308)
T ss_dssp G-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS----------------------------------------
T ss_pred h-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC----------------------------------------
Confidence 4 79999999999999999998875 77777776554332
Q ss_pred hHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchh
Q psy5270 169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNF 248 (352)
Q Consensus 169 ~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~ 248 (352)
|.+++..+ ......++.+++++|+++.+|. +..++.| +.|++++|++++ +|. +
T Consensus 139 ----------------n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L------~~L~l~~n~l~~--~~~-l 191 (308)
T 1h6u_A 139 ----------------NQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKL------TTLKADDNKISD--ISP-L 191 (308)
T ss_dssp ----------------SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCC--CGG-G
T ss_pred ----------------CccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCC------CEEECCCCccCc--Chh-h
Confidence 23333222 2345567888999999998876 6677766 799999999986 454 8
Q ss_pred hhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270 249 FMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 249 ~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~ 287 (352)
..+++|++|+|++|+++.+|+ +.++++|+.+....+++
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred cCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 999999999999999997774 89999999885444444
No 81
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.6e-21 Score=163.74 Aligned_cols=176 Identities=29% Similarity=0.425 Sum_probs=139.2
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNN 82 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~ 82 (352)
+.++.+++.++++|.++. ++|++|++++|+++.+|+ .++.+++|++|++++|+++.+|.. |+++++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 578899999999998764 589999999999997765 578999999999999999988765 6899999999999999
Q ss_pred CCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161 (352)
Q Consensus 83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s 161 (352)
+++ ..+..|+++++|++|++++|+++.+|+. ++++++|
T Consensus 88 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------------- 126 (208)
T 2o6s_A 88 LQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL---------------------------------------- 126 (208)
T ss_dssp CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------------
T ss_pred CCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC----------------------------------------
Confidence 986 4455678999999999999999977653 4444433
Q ss_pred hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhcccccc
Q psy5270 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLN 240 (352)
Q Consensus 162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~N~l~ 240 (352)
+.+++++|+++.+|.. +..++.| +.|++++|.+.
T Consensus 127 ---------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L------~~L~l~~N~~~ 161 (208)
T 2o6s_A 127 ---------------------------------------KDLRLYQNQLKSVPDGVFDRLTSL------QYIWLHDNPWD 161 (208)
T ss_dssp ---------------------------------------CEEECCSSCCSCCCTTTTTTCTTC------CEEECCSCCBC
T ss_pred ---------------------------------------CEEECCCCccceeCHHHhccCCCc------cEEEecCCCee
Confidence 3345556666666554 5556666 68889888887
Q ss_pred ccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccc
Q psy5270 241 EQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKN 276 (352)
Q Consensus 241 g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~ 276 (352)
+ .. ++|+.|+++.|+++ .+|++++++..
T Consensus 162 ~-~~-------~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 C-TC-------PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp C-CT-------TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred c-CC-------CCHHHHHHHHHhCCceeeccCccccC
Confidence 6 33 46788888888888 88888876654
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=4.9e-22 Score=183.51 Aligned_cols=232 Identities=19% Similarity=0.185 Sum_probs=148.8
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCC-cccc-ccCCCCCCCE-EEccC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS-SLPR-GFGAFPVLEV-LDLTY 80 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~-~ip~-~~~~l~~L~~-L~Ls~ 80 (352)
+.++.+++++++||.++. +++++|+|++|+++.||+ .|.++++|++|+|++|++. .+|. .|.++++++. ++++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 568899999999999874 589999999999999986 6899999999999999986 5765 4788988765 77788
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~ 159 (352)
|++++ ..|..|.++++|++|++++|+++.+|. .+.+..++..+++. ....+..++......
T Consensus 90 N~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~-----------------~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 90 NNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ-----------------DNINIHTIERNSFVG 151 (350)
T ss_dssp TTCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE-----------------SCTTCCEECTTSSTT
T ss_pred Ccccc-cCchhhhhccccccccccccccccCCchhhcccchhhhhhhc-----------------cccccccccccchhh
Confidence 99987 457789999999999999999997765 33333333222211 111111111100000
Q ss_pred cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccc-cccCCCcccC-CCCCcccchhhhhhhhhhccc
Q psy5270 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-MNRLSSLPRG-FGAFPVLEAFSFTTILDLTYN 237 (352)
Q Consensus 160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~-~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~N 237 (352)
... .. ..+.+++|+++.+.+..+....+..+++. +|.++.||.. +..++.| +.||+++|
T Consensus 152 ~~~-~l------------~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L------~~LdLs~N 212 (350)
T 4ay9_X 152 LSF-ES------------VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP------VILDISRT 212 (350)
T ss_dssp SBS-SC------------EEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC------SEEECTTS
T ss_pred cch-hh------------hhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc------chhhcCCC
Confidence 000 00 01234556666655554444445555554 4666677753 4555555 57777777
Q ss_pred cccccCCCc-hhhhhHHhHhhhCCCCcceecchhhhcccccccc
Q psy5270 238 NLNEQSLPG-NFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM 280 (352)
Q Consensus 238 ~l~g~~iP~-~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l 280 (352)
+|+. +|. .+.+|++|+.+++ ++++.+|+ +.++++|+.+
T Consensus 213 ~l~~--lp~~~~~~L~~L~~l~~--~~l~~lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 213 RIHS--LPSYGLENLKKLRARST--YNLKKLPT-LEKLVALMEA 251 (350)
T ss_dssp CCCC--CCSSSCTTCCEEECTTC--TTCCCCCC-TTTCCSCCEE
T ss_pred CcCc--cChhhhccchHhhhccC--CCcCcCCC-chhCcChhhC
Confidence 7763 554 3445555444433 34556663 5666666655
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.5e-22 Score=181.35 Aligned_cols=197 Identities=21% Similarity=0.201 Sum_probs=154.5
Q ss_pred CCccEEEeeCCcCc-ccCccc--cCCCCCCEEEccCCcCc-ccc----cccCCCCCCcEEEccCCCCCccc-cccCCCCC
Q psy5270 2 LYITRITLSHNKLK-EIPPGL--ANLVNLEILTLFNNQIE-TLP----TSLSSLPKLRILNLGMNRLSSLP-RGFGAFPV 72 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~-~ip~~l--~~l~~L~~L~L~~N~l~-~ip----~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~ 72 (352)
++|++|++++|.++ .+|..+ +++++|++|+|++|+++ ..| ..+..+++|++|++++|+++.+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 46999999999998 778887 89999999999999998 434 35568999999999999999665 57899999
Q ss_pred CCEEEccCCCCCC---CCCCCccccCccCcEEEccCCccccchhh----ccCcccHHHHHHhcchhhHhhcCceEeeccc
Q psy5270 73 LEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFEVLPAE----IGNLKNLQIILETFLPDMMEKNRGHIVGISS 145 (352)
Q Consensus 73 L~~L~Ls~N~l~g---~~~p~~~~~l~~L~~L~l~~N~l~~ip~~----~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss 145 (352)
|++|++++|++.+ ...+..++.+++|++|++++|+++.+|.. ++++++|++|+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~-------------------- 230 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD-------------------- 230 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE--------------------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE--------------------
Confidence 9999999999865 11233457899999999999999866552 34444444332
Q ss_pred cccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-cc---CCccCcccccccCCCcccCCCCCc
Q psy5270 146 MAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DT---GLCKNPKIKMNRLSSLPRGFGAFP 221 (352)
Q Consensus 146 ~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~---~~l~~l~l~~n~l~~ip~~~~~l~ 221 (352)
+++|++++..|..+ .. +.++.+++++|+++.+|..+. +
T Consensus 231 ------------------------------------Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~ 272 (310)
T 4glp_A 231 ------------------------------------LSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A 272 (310)
T ss_dssp ------------------------------------CTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S
T ss_pred ------------------------------------CCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--C
Confidence 34556666544322 22 578899999999999998774 4
Q ss_pred ccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270 222 VLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265 (352)
Q Consensus 222 ~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~ 265 (352)
.| +.|||++|++++ +|. +..+++|+.|+|++|.++
T Consensus 273 ~L------~~L~Ls~N~l~~--~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 273 KL------RVLDLSSNRLNR--APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CC------SCEECCSCCCCS--CCC-TTSCCCCSCEECSSTTTS
T ss_pred CC------CEEECCCCcCCC--Cch-hhhCCCccEEECcCCCCC
Confidence 55 799999999986 455 678899999999999986
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=2e-21 Score=174.75 Aligned_cols=172 Identities=23% Similarity=0.333 Sum_probs=121.5
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++|++|++++|.++.+|. ++.+++|++|++++|+++.+++ ++.+++|++|++++|+++.+|. ++.+++|+.|++++|
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence 457777777777776653 6777777777777777776665 7777777777777777777654 777777777777777
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s 161 (352)
++++ + +.++.+++|++|++++|+++.+ +.+++++
T Consensus 123 ~i~~--~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~------------------------------------------ 156 (291)
T 1h6t_A 123 GISD--I-NGLVHLPQLESLYLGNNKITDI-TVLSRLT------------------------------------------ 156 (291)
T ss_dssp CCCC--C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCT------------------------------------------
T ss_pred cCCC--C-hhhcCCCCCCEEEccCCcCCcc-hhhccCC------------------------------------------
Confidence 7765 3 4577777777777777777755 2333333
Q ss_pred hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccc
Q psy5270 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241 (352)
Q Consensus 162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g 241 (352)
.++.+++++|+++.++. +..++.| +.|++++|.+++
T Consensus 157 -------------------------------------~L~~L~L~~N~l~~~~~-l~~l~~L------~~L~L~~N~i~~ 192 (291)
T 1h6t_A 157 -------------------------------------KLDTLSLEDNQISDIVP-LAGLTKL------QNLYLSKNHISD 192 (291)
T ss_dssp -------------------------------------TCSEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCB
T ss_pred -------------------------------------CCCEEEccCCccccchh-hcCCCcc------CEEECCCCcCCC
Confidence 23445566677776654 5566666 688889998875
Q ss_pred cCCCchhhhhHHhHhhhCCCCcceecch
Q psy5270 242 QSLPGNFFMLETLRALYLGDNDFEVLPA 269 (352)
Q Consensus 242 ~~iP~~~~~l~~L~~L~Ls~N~l~~iP~ 269 (352)
+| .+..+++|+.|++++|+++..|.
T Consensus 193 --l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 193 --LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp --CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred --Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 55 48888888899999888875443
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.4e-20 Score=157.61 Aligned_cols=120 Identities=35% Similarity=0.515 Sum_probs=103.6
Q ss_pred CCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L 78 (352)
++|++|++++|+++.+|+. ++++++|++|++++|+++.+|+ .+..+++|++|++++|+++.+|.. |+++++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4789999999999977765 7899999999999999998766 578999999999999999988765 799999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHH
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 122 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~ 122 (352)
++|++++ ..+..|.++++|++|++++|+++.+|.. +.++++|+
T Consensus 108 ~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 108 NTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 9999987 4455689999999999999999977664 55554443
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3e-21 Score=188.22 Aligned_cols=172 Identities=23% Similarity=0.320 Sum_probs=140.0
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++|++|+|++|+|+.|| +.+++|++|+|++|+++.+|. +++ +|++|++++|+++.+|. .+++|+.|++++|
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCC
Confidence 57999999999999999 457899999999999999998 776 89999999999999998 6899999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s 161 (352)
++++ +|. .+++|++|++++|+++.+|. ++ ++|+.|+++.
T Consensus 151 ~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~--------------------------------- 189 (571)
T 3cvr_A 151 QLTM--LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST--------------------------------- 189 (571)
T ss_dssp CCSC--CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS---------------------------------
T ss_pred ccCc--CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC---------------------------------
Confidence 9986 787 57899999999999999988 65 5555444332
Q ss_pred hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc-----cCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcc
Q psy5270 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD-----TGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY 236 (352)
Q Consensus 162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~-----~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~ 236 (352)
|+++. +|.... ...++.+++++|+++.||..++.++.| +.|+|++
T Consensus 190 -----------------------N~L~~-lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L------~~L~L~~ 239 (571)
T 3cvr_A 190 -----------------------NLLES-LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPT------CTIILED 239 (571)
T ss_dssp -----------------------SCCSS-CCCCC--------CCEEEECCSSCCCCCCGGGGGSCTT------EEEECCS
T ss_pred -----------------------CCCCc-hhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCC------CEEEeeC
Confidence 22221 111000 112367899999999999988888887 7999999
Q ss_pred ccccccCCCchhhhhHHh
Q psy5270 237 NNLNEQSLPGNFFMLETL 254 (352)
Q Consensus 237 N~l~g~~iP~~~~~l~~L 254 (352)
|.+++ .+|..++.++..
T Consensus 240 N~l~~-~~p~~l~~l~~~ 256 (571)
T 3cvr_A 240 NPLSS-RIRESLSQQTAQ 256 (571)
T ss_dssp SSCCH-HHHHHHHHHHHS
T ss_pred CcCCC-cCHHHHHHhhcC
Confidence 99999 799999888763
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=8.4e-23 Score=191.05 Aligned_cols=83 Identities=22% Similarity=0.178 Sum_probs=49.7
Q ss_pred ccCCccCcccccccC-----CCcccCCCCCcccchhhhhhhhhhccccccccC----CCchhhh--hHHhHhhhCCCCcc
Q psy5270 196 DTGLCKNPKIKMNRL-----SSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS----LPGNFFM--LETLRALYLGDNDF 264 (352)
Q Consensus 196 ~~~~l~~l~l~~n~l-----~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~----iP~~~~~--l~~L~~L~Ls~N~l 264 (352)
....++.++++.|++ ..+|..+..++.| +.|+|++|.+++ . +|..+.. +++|++|+|++|.+
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L------~~L~L~~n~i~~-~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNL------RELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC------CEEECTTCCCCH-HHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCc------CEEECCCCCCch-hhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 344556666777766 3455555555555 567777777764 2 3445532 66677777777777
Q ss_pred ee-----cchhh-hcccccccccCCce
Q psy5270 265 EV-----LPAEI-GNLKNLQIMLEPRW 285 (352)
Q Consensus 265 ~~-----iP~~l-~~l~~L~~l~~~~~ 285 (352)
+. +|..+ +++++|+.+....+
T Consensus 287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 287 ELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp BHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 64 66666 55666766643333
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=159.54 Aligned_cols=104 Identities=28% Similarity=0.394 Sum_probs=84.8
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccc--cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYN 81 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip--~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N 81 (352)
+.+++++|.+++||+.+.. .+++|+|++|+++.++ ..+..+++|++|++++|+++.+++ .|+++++|+.|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5788899999888887754 5689999999988663 347888899999999999987765 6888889999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVL 111 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i 111 (352)
++++ ..|..|.++++|++|++++|+++.+
T Consensus 92 ~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 92 RLEN-VQHKMFKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp CCCC-CCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred ccCc-cCHhHhcCCcCCCEEECCCCcCCeE
Confidence 9887 4555688888899998888888865
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.6e-20 Score=163.95 Aligned_cols=193 Identities=20% Similarity=0.316 Sum_probs=155.0
Q ss_pred CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCc-Cccccc-ccCCCCCCcEEEccC-CCCCcccc-ccCCCCCCCEE
Q psy5270 2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQ-IETLPT-SLSSLPKLRILNLGM-NRLSSLPR-GFGAFPVLEVL 76 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~-l~~ip~-~l~~L~~L~~L~L~~-N~l~~ip~-~~~~l~~L~~L 76 (352)
++|++|++++|+++.+|+ .|+++++|++|++++|+ ++.+|+ .+.++++|++|++++ |+++.+|+ .|+++++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 468999999999998876 68999999999999997 888865 789999999999999 99998875 58999999999
Q ss_pred EccCCCCCCCCCCCccccCccCc---EEEccCC-ccccchh-hccCcccHH-HHHHhcchhhHhhcCceEeecccccccc
Q psy5270 77 DLTYNNLNEQSLPGNFFMLETLR---ALYLGDN-DFEVLPA-EIGNLKNLQ-IILETFLPDMMEKNRGHIVGISSMAGIV 150 (352)
Q Consensus 77 ~Ls~N~l~g~~~p~~~~~l~~L~---~L~l~~N-~l~~ip~-~~~nl~~L~-~L~l~~~p~~~~~~~g~i~~iss~~~l~ 150 (352)
++++|++++ +|. |+.+++|+ +|++++| +++.+|. .|.++++|+ .++++
T Consensus 111 ~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~----------------------- 164 (239)
T 2xwt_C 111 GIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY----------------------- 164 (239)
T ss_dssp EEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC-----------------------
T ss_pred eCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC-----------------------
Confidence 999999986 787 88899998 9999999 9998876 577777776 54433
Q ss_pred CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCccccccc-CCCccc-CCCCC-cccchhh
Q psy5270 151 GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNR-LSSLPR-GFGAF-PVLEAFS 227 (352)
Q Consensus 151 ~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~-l~~ip~-~~~~l-~~L~~~~ 227 (352)
+|+++.+.+..+....++.+++++|+ ++.+|. .+..+ +.|
T Consensus 165 ---------------------------------~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L---- 207 (239)
T 2xwt_C 165 ---------------------------------NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP---- 207 (239)
T ss_dssp ---------------------------------SCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC----
T ss_pred ---------------------------------CCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC----
Confidence 22333222222223456778899995 998864 46667 777
Q ss_pred hhhhhhhccccccccCCCchhhhhHHhHhhhCCCCc
Q psy5270 228 FTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDND 263 (352)
Q Consensus 228 ~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~ 263 (352)
+.||+++|++++ +|.. .+++|+.|+++++.
T Consensus 208 --~~L~l~~N~l~~--l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 208 --SLLDVSQTSVTA--LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp --SEEECTTCCCCC--CCCT--TCTTCSEEECTTC-
T ss_pred --cEEECCCCcccc--CChh--HhccCceeeccCcc
Confidence 799999999985 6765 67888888888763
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1e-19 Score=160.01 Aligned_cols=177 Identities=26% Similarity=0.361 Sum_probs=144.3
Q ss_pred CCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEc
Q psy5270 25 VNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL 103 (352)
Q Consensus 25 ~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l 103 (352)
.+.++++++++.++.+|..+. ++++.|++++|+++.+++ .|+++++|+.|++++|++++ ..|..|.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence 357899999999999998776 689999999999997655 69999999999999999998 56778999999999999
Q ss_pred cCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhc
Q psy5270 104 GDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182 (352)
Q Consensus 104 ~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~ 182 (352)
++|+++.+|. .++++++|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L------------------------------------------------------------- 109 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQL------------------------------------------------------------- 109 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTC-------------------------------------------------------------
T ss_pred CCCcccccChhHhcccCCC-------------------------------------------------------------
Confidence 9999997764 34443332
Q ss_pred CCceeecccCcccccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCC
Q psy5270 183 SKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGD 261 (352)
Q Consensus 183 ~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~ 261 (352)
+.+++++|+++.+|.. ++.++.| +.|+|++|++++ ..|..|..+++|++|+|++
T Consensus 110 ------------------~~L~L~~N~l~~~~~~~~~~l~~L------~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 110 ------------------DKLYLGGNQLKSLPSGVFDRLTKL------KELRLNTNQLQS-IPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp ------------------CEEECCSSCCCCCCTTTTTTCTTC------CEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred ------------------CEEEcCCCcCCCcChhHhccCCcc------cEEECcCCcCCc-cCHHHcCcCcCCCEEECCC
Confidence 3456677778777654 4667777 799999999986 4555799999999999999
Q ss_pred Ccceecch-hhhcccccccccCCceeeecc
Q psy5270 262 NDFEVLPA-EIGNLKNLQIMLEPRWVISMG 290 (352)
Q Consensus 262 N~l~~iP~-~l~~l~~L~~l~~~~~~~~~~ 290 (352)
|+++.+|+ .+.++++|+.+....++....
T Consensus 165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 165 NQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99996655 689999999987666665433
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1e-19 Score=157.83 Aligned_cols=109 Identities=36% Similarity=0.529 Sum_probs=82.4
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNN 82 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~ 82 (352)
+.++.+++.++.+|..+. ++|++|+|++|+++.+ |..+..+++|++|+|++|+++.+|.. |+.+++|+.|+|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 467788888888887665 6788888888888855 66778888888888888888877654 6778888888888888
Q ss_pred CCCCCCCCccccCccCcEEEccCCccccchhhcc
Q psy5270 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG 116 (352)
Q Consensus 83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~ 116 (352)
+++ ..+..|..+++|++|++++|+++.+|..+.
T Consensus 100 l~~-l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 132 (229)
T 3e6j_A 100 LTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIE 132 (229)
T ss_dssp CCC-CCTTTTTTCTTCCEEECCSSCCCSCCTTGG
T ss_pred CCc-cChhHhCcchhhCeEeccCCcccccCcccc
Confidence 876 334456778888888888888777765543
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=8.2e-20 Score=169.31 Aligned_cols=172 Identities=27% Similarity=0.377 Sum_probs=133.2
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccC-CCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLS-SLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYN 81 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~-~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N 81 (352)
+.+++++|+++.+|..+.. .+++|+|++|+++.++. .+. ++++|+.|+|++|+++.+++ .|+++++|+.|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5789999999999988764 68999999999997755 465 89999999999999998765 5999999999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 160 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~ 160 (352)
++++ ..+..|.++++|++|+|++|+++.+ |..|.++++|+
T Consensus 99 ~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-------------------------------------- 139 (361)
T 2xot_A 99 HLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ-------------------------------------- 139 (361)
T ss_dssp CCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC--------------------------------------
T ss_pred cCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC--------------------------------------
Confidence 9987 4556789999999999999999966 44565554443
Q ss_pred chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCC----CCCcccchhhhhhhhhhcc
Q psy5270 161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGF----GAFPVLEAFSFTTILDLTY 236 (352)
Q Consensus 161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~----~~l~~L~~~~~L~~L~ls~ 236 (352)
.+++++|+++.+|..+ +.++.| +.|||++
T Consensus 140 -----------------------------------------~L~L~~N~l~~l~~~~~~~~~~l~~L------~~L~L~~ 172 (361)
T 2xot_A 140 -----------------------------------------KLYLSQNQISRFPVELIKDGNKLPKL------MLLDLSS 172 (361)
T ss_dssp -----------------------------------------EEECCSSCCCSCCGGGTC----CTTC------CEEECCS
T ss_pred -----------------------------------------EEECCCCcCCeeCHHHhcCcccCCcC------CEEECCC
Confidence 3445566666666543 334455 6888888
Q ss_pred ccccccCCCchhhhhHH--hHhhhCCCCcce
Q psy5270 237 NNLNEQSLPGNFFMLET--LRALYLGDNDFE 265 (352)
Q Consensus 237 N~l~g~~iP~~~~~l~~--L~~L~Ls~N~l~ 265 (352)
|+|++ ..+..+..++. ++.|+|++|.+.
T Consensus 173 N~l~~-l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKK-LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCC-CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCc-cCHHHhhhccHhhcceEEecCCCcc
Confidence 88875 23356777776 477888888887
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=3.5e-21 Score=170.68 Aligned_cols=112 Identities=23% Similarity=0.343 Sum_probs=88.3
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN 82 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~ 82 (352)
+++.+++++|.++.++ .+..+++|++|++++|.++.+| .+..+++|+.|++++|+++.+|+ ++++++|+.|++++|+
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 4556778888888777 5778888999999999888887 68888899999999999988877 8888999999999999
Q ss_pred CCCCCCCCccccCccCcEEEccCCccccchhhccCcccHH
Q psy5270 83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122 (352)
Q Consensus 83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~ 122 (352)
+++ +|.... ++|++|++++|+++.+| .++++++|+
T Consensus 97 l~~--l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~ 131 (263)
T 1xeu_A 97 LKN--LNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLE 131 (263)
T ss_dssp CSC--CTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCC
T ss_pred cCC--cCcccc--CcccEEEccCCccCCCh-hhcCccccc
Confidence 876 565333 88899999999888765 355544443
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=4.1e-20 Score=181.91 Aligned_cols=171 Identities=23% Similarity=0.354 Sum_probs=102.9
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++|+.|++++|.++.+| .++.+++|+.|+|++|+++.+|+ +..+++|+.|+|++|+++.+| .++.+++|+.|+|++|
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC
Confidence 34555666666665554 35556666666666666655544 556666666666666665554 4555666666666666
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s 161 (352)
++++ + +.++.+++|+.|+|++|+++.+ ..++++
T Consensus 120 ~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l------------------------------------------- 152 (605)
T 1m9s_A 120 GISD--I-NGLVHLPQLESLYLGNNKITDI-TVLSRL------------------------------------------- 152 (605)
T ss_dssp CCCC--C-GGGGGCTTCSEEECCSSCCCCC-GGGGSC-------------------------------------------
T ss_pred CCCC--C-ccccCCCccCEEECCCCccCCc-hhhccc-------------------------------------------
Confidence 6654 2 2455566666666666655544 233332
Q ss_pred hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccc
Q psy5270 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241 (352)
Q Consensus 162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g 241 (352)
..++.+++++|+++.++. +..++.| +.|+|++|++++
T Consensus 153 ------------------------------------~~L~~L~Ls~N~l~~~~~-l~~l~~L------~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 153 ------------------------------------TKLDTLSLEDNQISDIVP-LAGLTKL------QNLYLSKNHISD 189 (605)
T ss_dssp ------------------------------------TTCSEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCB
T ss_pred ------------------------------------CCCCEEECcCCcCCCchh-hccCCCC------CEEECcCCCCCC
Confidence 234455666677765544 5556555 678888888875
Q ss_pred cCCCchhhhhHHhHhhhCCCCcceecc
Q psy5270 242 QSLPGNFFMLETLRALYLGDNDFEVLP 268 (352)
Q Consensus 242 ~~iP~~~~~l~~L~~L~Ls~N~l~~iP 268 (352)
+| .+..+++|+.|+|++|.++..|
T Consensus 190 --l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 190 --LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred --Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 43 5778888888888888887433
No 95
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=1.2e-23 Score=205.87 Aligned_cols=189 Identities=21% Similarity=0.188 Sum_probs=149.2
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCc-------------Cc-ccccccCCCCCCcEEE-ccCCCCCcccc-
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQ-------------IE-TLPTSLSSLPKLRILN-LGMNRLSSLPR- 65 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~-------------l~-~ip~~l~~L~~L~~L~-L~~N~l~~ip~- 65 (352)
++|+.|+|++|+++.||++++++++|++|++++|. +. .+|..++.+++|+.|+ ++.|.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 57888999999999999999999999999997774 33 4567888888888888 66665443321
Q ss_pred -----ccCC--CCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCc
Q psy5270 66 -----GFGA--FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRG 138 (352)
Q Consensus 66 -----~~~~--l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g 138 (352)
.+.. ...|+.|+|++|++++ +|. |+++++|+.|++++|+++.+|..++++++|+
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~---------------- 489 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLE---------------- 489 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCC----------------
T ss_pred hhhcccccccCccCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCC----------------
Confidence 0111 1258999999999986 787 9999999999999999999998887765543
Q ss_pred eEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCC
Q psy5270 139 HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFG 218 (352)
Q Consensus 139 ~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~ 218 (352)
.+++++|+++.+| .++
T Consensus 490 ---------------------------------------------------------------~L~Ls~N~l~~lp-~l~ 505 (567)
T 1dce_A 490 ---------------------------------------------------------------VLQASDNALENVD-GVA 505 (567)
T ss_dssp ---------------------------------------------------------------EEECCSSCCCCCG-GGT
T ss_pred ---------------------------------------------------------------EEECCCCCCCCCc-ccC
Confidence 3456678888888 778
Q ss_pred CCcccchhhhhhhhhhccccccccCC-CchhhhhHHhHhhhCCCCcceecchhhh----cccccccc
Q psy5270 219 AFPVLEAFSFTTILDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIG----NLKNLQIM 280 (352)
Q Consensus 219 ~l~~L~~~~~L~~L~ls~N~l~g~~i-P~~~~~l~~L~~L~Ls~N~l~~iP~~l~----~l~~L~~l 280 (352)
.++.| +.|+|++|++++ .+ |..++.+++|++|+|++|.++.+|+.+. .+++|++|
T Consensus 506 ~l~~L------~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 506 NLPRL------QELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TCSSC------CEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCC------cEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 88887 699999999997 44 9999999999999999999997666543 35666654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.7e-20 Score=171.84 Aligned_cols=218 Identities=18% Similarity=0.151 Sum_probs=149.3
Q ss_pred CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCc-cccc-ccCCCCCCcE-EEccCCCCCccc-cccCCCCCCCEE
Q psy5270 2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIE-TLPT-SLSSLPKLRI-LNLGMNRLSSLP-RGFGAFPVLEVL 76 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~-~ip~-~l~~L~~L~~-L~L~~N~l~~ip-~~~~~l~~L~~L 76 (352)
+++++|+|++|+|++||+ .|.++++|++|+|++|++. .+|. .|.++++++. +.++.|+++.+| ..|+++++|+.|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 478999999999999997 5899999999999999986 6765 6889998775 677889999885 568999999999
Q ss_pred EccCCCCCCCCCCCccccCccCcEEEccC-Cccccchh-hccCcc-cHHHHHHhcchhhHhhcCceEeeccccccccCCC
Q psy5270 77 DLTYNNLNEQSLPGNFFMLETLRALYLGD-NDFEVLPA-EIGNLK-NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP 153 (352)
Q Consensus 77 ~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~-N~l~~ip~-~~~nl~-~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp 153 (352)
++++|++++ ..+..+....++..+++.+ |++..+|. .+..+. .++.++++. + .+..++
T Consensus 110 ~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-------N-----------~i~~i~ 170 (350)
T 4ay9_X 110 LISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-------N-----------GIQEIH 170 (350)
T ss_dssp EEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-------S-----------CCCEEC
T ss_pred ccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-------c-----------cccCCC
Confidence 999999987 3455666777888899865 56777765 454443 344333332 1 111111
Q ss_pred CccccccchhhhhhhhHHhHHHHHHHHhcC-CceeecccCcc-cccCCccCcccccccCCCcccC-CCCCcccchhhhhh
Q psy5270 154 NLVPYCASKFAVRGLMEALAEELREDARNS-KIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTT 230 (352)
Q Consensus 154 ~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~-~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~ 230 (352)
........ + ..+.+. .|.++.+.+.. .....++.+++++|+++.+|.. +.+++.| +
T Consensus 171 ~~~f~~~~---L------------~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L------~ 229 (350)
T 4ay9_X 171 NSAFNGTQ---L------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL------R 229 (350)
T ss_dssp TTSSTTEE---E------------EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE------E
T ss_pred hhhccccc---h------------hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHh------h
Confidence 11000000 0 001122 34444444433 3567889999999999999874 4445444 3
Q ss_pred hhhhccccccccCCCchhhhhHHhHhhhCCCCcc
Q psy5270 231 ILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 264 (352)
Q Consensus 231 ~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l 264 (352)
.+++ +++. .+| .+.++++|+.++++++.-
T Consensus 230 ~l~~--~~l~--~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 230 ARST--YNLK--KLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp CTTC--TTCC--CCC-CTTTCCSCCEEECSCHHH
T ss_pred hccC--CCcC--cCC-CchhCcChhhCcCCCCcc
Confidence 4443 4554 578 488999999999987653
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.7e-19 Score=154.23 Aligned_cols=104 Identities=32% Similarity=0.447 Sum_probs=80.3
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNN 82 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~ 82 (352)
+.+++++|.+++||..+. +++++|++++|+++.+|+ .|..+++|+.|+|++|+++.+ |..|.++++|+.|+|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467888888888887765 578888888888886654 778888888888888888865 6678888888888888888
Q ss_pred CCCCCCCC-ccccCccCcEEEccCCccccch
Q psy5270 83 LNEQSLPG-NFFMLETLRALYLGDNDFEVLP 112 (352)
Q Consensus 83 l~g~~~p~-~~~~l~~L~~L~l~~N~l~~ip 112 (352)
+++ +|. .|..+++|++|+|++|+++.++
T Consensus 92 l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 92 ITE--LPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp CCC--CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCc--cCHhHccCCCCCCEEECCCCCCCEeC
Confidence 875 444 4677888888888888877553
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=1.3e-19 Score=153.49 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=61.0
Q ss_pred cCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEE
Q psy5270 22 ANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL 101 (352)
Q Consensus 22 ~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L 101 (352)
+.+++|++|++++|.++.+| .+..+++|++|++++|.++.++ .++.+++|+.|++++|++++ ..|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEE
Confidence 44556666777766666666 4666666777777666555444 46666667777777776665 456666666677777
Q ss_pred EccCCccc-cchhhccCcccH
Q psy5270 102 YLGDNDFE-VLPAEIGNLKNL 121 (352)
Q Consensus 102 ~l~~N~l~-~ip~~~~nl~~L 121 (352)
++++|+++ ..|..++++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSC
T ss_pred EecCCccCcHhHHHHhhCCCC
Confidence 77777666 345455444433
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=2.6e-20 Score=187.49 Aligned_cols=79 Identities=28% Similarity=0.317 Sum_probs=41.6
Q ss_pred ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCccc
Q psy5270 41 PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120 (352)
Q Consensus 41 p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~ 120 (352)
|..+..+++|+.|+|++|++..+|..++++++|+.|+|++|.|+ .+|..|+++++|++|+|++|+|+.+|.+|+++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 44555555555555555555555555555555555555555555 3555555555555555555555555555544443
Q ss_pred H
Q psy5270 121 L 121 (352)
Q Consensus 121 L 121 (352)
|
T Consensus 295 L 295 (727)
T 4b8c_D 295 L 295 (727)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.6e-20 Score=188.95 Aligned_cols=110 Identities=32% Similarity=0.293 Sum_probs=91.8
Q ss_pred cCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCc
Q psy5270 17 IPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE 96 (352)
Q Consensus 17 ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~ 96 (352)
.|+.+..++.|++|+|++|.+..+|..++++++|++|+|++|+|+.||..|+++++|++|+|++|+|+ .+|..|++++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCC
Confidence 45668888899999999999988888888999999999999999999988999999999999999997 4799999999
Q ss_pred cCcEEEccCCccccchhhccCcccHHHHHHhc
Q psy5270 97 TLRALYLGDNDFEVLPAEIGNLKNLQIILETF 128 (352)
Q Consensus 97 ~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~ 128 (352)
+|++|+|++|.|+.+|..|+++++|+.|+++.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 99999999999998888888888887766554
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.4e-19 Score=161.14 Aligned_cols=182 Identities=21% Similarity=0.294 Sum_probs=139.7
Q ss_pred eeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCC
Q psy5270 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSL 88 (352)
Q Consensus 9 Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~ 88 (352)
+..+.++.+. .+..+++|++|++++|.++.+|. +..+++|+.|++++|+++.+++ ++++++|+.|++++|++++ +
T Consensus 31 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--~ 105 (291)
T 1h6t_A 31 LKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD--L 105 (291)
T ss_dssp TTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--G
T ss_pred hcCCCccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--C
Confidence 4444444321 23467789999999999988864 8889999999999999998877 8999999999999999976 4
Q ss_pred CCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhh
Q psy5270 89 PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168 (352)
Q Consensus 89 p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~ 168 (352)
| .++.+++|++|++++|+++.++ .++++++
T Consensus 106 ~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~------------------------------------------------ 135 (291)
T 1h6t_A 106 S-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQ------------------------------------------------ 135 (291)
T ss_dssp G-GGTTCTTCCEEECTTSCCCCCG-GGGGCTT------------------------------------------------
T ss_pred h-hhccCCCCCEEECCCCcCCCCh-hhcCCCC------------------------------------------------
Confidence 4 4889999999999999988763 3333332
Q ss_pred hHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchh
Q psy5270 169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNF 248 (352)
Q Consensus 169 ~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~ 248 (352)
++.+++++|+++.+ ..++.++.| +.|++++|++++ ++. +
T Consensus 136 -------------------------------L~~L~l~~n~l~~~-~~l~~l~~L------~~L~L~~N~l~~--~~~-l 174 (291)
T 1h6t_A 136 -------------------------------LESLYLGNNKITDI-TVLSRLTKL------DTLSLEDNQISD--IVP-L 174 (291)
T ss_dssp -------------------------------CCEEECCSSCCCCC-GGGGGCTTC------SEEECCSSCCCC--CGG-G
T ss_pred -------------------------------CCEEEccCCcCCcc-hhhccCCCC------CEEEccCCcccc--chh-h
Confidence 23445666777665 344555555 799999999986 444 9
Q ss_pred hhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270 249 FMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 249 ~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~ 287 (352)
..+++|+.|++++|+++.+|. +.++++|+.+....+++
T Consensus 175 ~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 999999999999999998875 89999999885444433
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.6e-19 Score=177.70 Aligned_cols=185 Identities=21% Similarity=0.303 Sum_probs=144.4
Q ss_pred EEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCC
Q psy5270 6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNE 85 (352)
Q Consensus 6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g 85 (352)
.++++.+.++.+++ +..+++|+.|++++|.++.+| .+..+++|+.|+|++|+++.+|+ ++.+++|+.|+|++|.+++
T Consensus 25 ~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred HHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC
Confidence 34455666654332 456788999999999998886 58899999999999999998877 8899999999999999976
Q ss_pred CCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhh
Q psy5270 86 QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165 (352)
Q Consensus 86 ~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l 165 (352)
+| .++.+++|++|+|++|+++.+| .++++++
T Consensus 102 --l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~--------------------------------------------- 132 (605)
T 1m9s_A 102 --LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQ--------------------------------------------- 132 (605)
T ss_dssp --CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTT---------------------------------------------
T ss_pred --Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCc---------------------------------------------
Confidence 44 7889999999999999988764 2333332
Q ss_pred hhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCC
Q psy5270 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP 245 (352)
Q Consensus 166 ~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP 245 (352)
++.+++++|+++.+ ..++.++.| +.|+|++|.+++ ..|
T Consensus 133 ----------------------------------L~~L~Ls~N~l~~l-~~l~~l~~L------~~L~Ls~N~l~~-~~~ 170 (605)
T 1m9s_A 133 ----------------------------------LESLYLGNNKITDI-TVLSRLTKL------DTLSLEDNQISD-IVP 170 (605)
T ss_dssp ----------------------------------CSEEECCSSCCCCC-GGGGSCTTC------SEEECCSSCCCC-CGG
T ss_pred ----------------------------------cCEEECCCCccCCc-hhhcccCCC------CEEECcCCcCCC-chh
Confidence 23445666777765 345566666 799999999997 444
Q ss_pred chhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270 246 GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI 287 (352)
Q Consensus 246 ~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~ 287 (352)
+..+++|+.|+|++|+++.+| .++.+++|+.|....+++
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred --hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 999999999999999999876 599999999886555544
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2.5e-20 Score=170.72 Aligned_cols=107 Identities=22% Similarity=0.164 Sum_probs=49.7
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCc-c-cccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEcc
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE-T-LPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLT 79 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~-~-ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls 79 (352)
+++.|++++|.++..++.+.++++|++|++++|.++ . +|..+..+++|++|++++|+++ .+|..++.+++|+.|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 344444444444433333444445555555555444 2 4444444555555555555444 344444445555555555
Q ss_pred CC-CCCCCCCCCccccCccCcEEEccCC-ccc
Q psy5270 80 YN-NLNEQSLPGNFFMLETLRALYLGDN-DFE 109 (352)
Q Consensus 80 ~N-~l~g~~~p~~~~~l~~L~~L~l~~N-~l~ 109 (352)
+| .+++..+|..+.++++|++|++++| .++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 54 3432113444444445555555555 444
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=8e-19 Score=151.25 Aligned_cols=126 Identities=31% Similarity=0.413 Sum_probs=112.7
Q ss_pred CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L 78 (352)
++|++|++++|+++.+|+ .|.++++|++|+|++|+++.+ |..|.++++|++|+|++|+++.+|+. |.++++|+.|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 478999999999998776 689999999999999999966 78999999999999999999999876 689999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETF 128 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~ 128 (352)
++|++++ ..|..|..+++|++|+|++|+++.+|+ .+..+++|+.++++.
T Consensus 112 ~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 112 NANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 9999998 568899999999999999999997765 588888777665543
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=8.6e-19 Score=151.06 Aligned_cols=126 Identities=21% Similarity=0.311 Sum_probs=111.4
Q ss_pred CCccEEEeeCCcCcccCc--cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEE
Q psy5270 2 LYITRITLSHNKLKEIPP--GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLD 77 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~--~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~ 77 (352)
+.+++|++++|+++.+++ .|+++++|++|+|++|+++.+++ .|.++++|++|+|++|+++.+|+. |+++++|+.|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 357899999999997643 48899999999999999997755 899999999999999999987665 89999999999
Q ss_pred ccCCCCCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhc
Q psy5270 78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETF 128 (352)
Q Consensus 78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~ 128 (352)
|++|++++ ..|..|.++++|++|++++|+++.+ |..|.++++|+.++++.
T Consensus 112 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 112 LRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 99999998 5688999999999999999999976 77898888887766554
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=5e-21 Score=177.55 Aligned_cols=102 Identities=21% Similarity=0.178 Sum_probs=48.5
Q ss_pred EEeeCCcCc-ccCccccCCCCCCEEEccCCcCcccc-----cccCCCC-CCcEEEccCCCCCcc-ccccCCC-----CCC
Q psy5270 7 ITLSHNKLK-EIPPGLANLVNLEILTLFNNQIETLP-----TSLSSLP-KLRILNLGMNRLSSL-PRGFGAF-----PVL 73 (352)
Q Consensus 7 L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~ip-----~~l~~L~-~L~~L~L~~N~l~~i-p~~~~~l-----~~L 73 (352)
+++++|.++ .+|..+...++|++|+|++|.++.++ ..+..++ +|++|+|++|+++.. +..++.+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 445555555 34444444444555555555555332 3444454 555555555555522 3333332 555
Q ss_pred CEEEccCCCCCCCCCCCccccC-----ccCcEEEccCCccc
Q psy5270 74 EVLDLTYNNLNEQSLPGNFFML-----ETLRALYLGDNDFE 109 (352)
Q Consensus 74 ~~L~Ls~N~l~g~~~p~~~~~l-----~~L~~L~l~~N~l~ 109 (352)
+.|+|++|++++ ..+..++.. ++|++|++++|+++
T Consensus 83 ~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 83 TSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred cEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 555555555544 233332222 45555555555555
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=4.7e-19 Score=150.00 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=92.3
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEccC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls~ 80 (352)
++|++|++++|.++.+| ++..+++|++|++++|.++.++ .+..+++|++|++++|+++ ..|..++.+++|+.|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 57889999999999888 7888899999999999776554 6888999999999999998 4788889999999999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCc-cccch
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDND-FEVLP 112 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~-l~~ip 112 (352)
|++++ ..|..++.+++|++|++++|+ ++.+|
T Consensus 122 n~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 122 SAHDD-SILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp SBCBG-GGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred CccCc-HhHHHHhhCCCCCEEEccCCCCccccH
Confidence 99987 678888899999999999997 66665
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.75 E-value=3e-19 Score=144.10 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=109.7
Q ss_pred CCccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCc-cccccCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS-LPRGFGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L 78 (352)
++|+.|++++|.++ .+|+.++.+++|++|++++|.++.+ ..++.+++|++|++++|+++. +|..++.+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 57899999999998 8999999999999999999999977 789999999999999999996 8888888999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccchh----hccCcccHHHHHH
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQIILE 126 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~----~~~nl~~L~~L~l 126 (352)
++|++++...|..++.+++|++|++++|+++.+|. .++.+++|+.+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 99999873234889999999999999999997765 5777777765543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=3.4e-18 Score=151.42 Aligned_cols=113 Identities=27% Similarity=0.366 Sum_probs=99.6
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
+++|++|++++|+++.+| +++.+++|++|+|++|+++.+|+ +..+++|++|++++|+++.+|.... ++|+.|++++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~ 115 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN 115 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC
Confidence 468999999999999998 78999999999999999998877 9999999999999999999887544 9999999999
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccH
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L 121 (352)
|++++ +| .++.+++|++|++++|+++.+| .++++++|
T Consensus 116 N~l~~--~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L 152 (263)
T 1xeu_A 116 NELRD--TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKL 152 (263)
T ss_dssp SCCSB--SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTC
T ss_pred CccCC--Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCC
Confidence 99986 44 6999999999999999999875 45544443
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.4e-18 Score=148.20 Aligned_cols=125 Identities=30% Similarity=0.425 Sum_probs=111.1
Q ss_pred CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L 78 (352)
++|++|+|++|+++.+ |..|+++++|++|+|++|+++.+|. .+..+++|++|+|++|+++.+|.. |+.+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5799999999999965 6779999999999999999998875 578999999999999999988765 789999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETF 128 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~ 128 (352)
++|+++ .+|..+..+++|++|++++|+++.+|. .+.++++|+.++++.
T Consensus 120 s~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 120 CCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 999998 489999999999999999999998775 577788877665554
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=5.7e-22 Score=189.39 Aligned_cols=108 Identities=25% Similarity=0.318 Sum_probs=67.9
Q ss_pred CCccEEEeeCCcCc-ccCccc-cCCC----CCCEEEccCCcCc-----ccccccCCCCCCcEEEccCCCCCc-ccc----
Q psy5270 2 LYITRITLSHNKLK-EIPPGL-ANLV----NLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMNRLSS-LPR---- 65 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~-~ip~~l-~~l~----~L~~L~L~~N~l~-----~ip~~l~~L~~L~~L~L~~N~l~~-ip~---- 65 (352)
++|++||+++|.++ ..+..+ ..+. +|++|+|++|+++ .+|..+..+++|++|++++|.++. -+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 56777888877776 333332 2333 5777888777776 346677777777777777777762 122
Q ss_pred c-cCCCCCCCEEEccCCCCCCC---CCCCccccCccCcEEEccCCccc
Q psy5270 66 G-FGAFPVLEVLDLTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFE 109 (352)
Q Consensus 66 ~-~~~l~~L~~L~Ls~N~l~g~---~~p~~~~~l~~L~~L~l~~N~l~ 109 (352)
. +...++|+.|++++|++++. .++..+..+++|++|++++|.++
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 1 22345677777777777641 12444555677777777777765
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=1.1e-18 Score=143.67 Aligned_cols=126 Identities=29% Similarity=0.297 Sum_probs=112.7
Q ss_pred CCccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCc-cccccCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS-LPRGFGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L 78 (352)
++|++|++++|+++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|+++. +|..++++++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 57999999999998 8999999999999999999999977 889999999999999999996 7777888999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccchh----hccCcccHHHHHHhc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQIILETF 128 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~----~~~nl~~L~~L~l~~ 128 (352)
++|++++...+..++.+++|++|++++|+++.+|. .+..+++|+.++++.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 99999872222789999999999999999998776 788888888776654
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=6.7e-20 Score=167.83 Aligned_cols=205 Identities=18% Similarity=0.226 Sum_probs=150.3
Q ss_pred CCCccEEEeeCCcCc-c-cCccccCCCCCCEEEccCCcCc-ccccccCCCCCCcEEEccCC-CCC--ccccccCCCCCCC
Q psy5270 1 MLYITRITLSHNKLK-E-IPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMN-RLS--SLPRGFGAFPVLE 74 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~-~-ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N-~l~--~ip~~~~~l~~L~ 74 (352)
+++|++|++++|.++ . +|..+.++++|++|++++|.++ ..|..++.+++|++|++++| .++ .+|..++++++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 468999999999998 4 8989999999999999999998 77889999999999999999 788 4788889999999
Q ss_pred EEEccCC-CCCCCCCCCccccCc-cCcEEEccCCc--cc--cchhhccCcccHHHHHHhcchhhHhhcCceEeecccccc
Q psy5270 75 VLDLTYN-NLNEQSLPGNFFMLE-TLRALYLGDND--FE--VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAG 148 (352)
Q Consensus 75 ~L~Ls~N-~l~g~~~p~~~~~l~-~L~~L~l~~N~--l~--~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~ 148 (352)
.|++++| .+++..++..+..++ +|++|++++|. ++ .+|..++++++|+.|+++.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~-------------------- 231 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD-------------------- 231 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT--------------------
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC--------------------
Confidence 9999999 998633688899999 99999999994 54 5777777676666554432
Q ss_pred ccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCce-eeccc-CcccccCCccCcccccccCCCccc---CCCCCccc
Q psy5270 149 IVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK-FTSIF-PFMVDTGLCKNPKIKMNRLSSLPR---GFGAFPVL 223 (352)
Q Consensus 149 l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~-~~g~~-P~~~~~~~l~~l~l~~n~l~~ip~---~~~~l~~L 223 (352)
+. +++.. +.....+.++.+++++|. ...|. .++.++.|
T Consensus 232 ------------------------------------~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 232 ------------------------------------SVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTL 274 (336)
T ss_dssp ------------------------------------CTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTC
T ss_pred ------------------------------------CCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCC
Confidence 11 11111 111133456666777764 11122 23334444
Q ss_pred chhhhhhhhhhccccccccCCCchhhhhH-HhHhhhCCCCcce-ecchhhhc
Q psy5270 224 EAFSFTTILDLTYNNLNEQSLPGNFFMLE-TLRALYLGDNDFE-VLPAEIGN 273 (352)
Q Consensus 224 ~~~~~L~~L~ls~N~l~g~~iP~~~~~l~-~L~~L~Ls~N~l~-~iP~~l~~ 273 (352)
+.|++++| ++ ...+..+. .++.|++++|+++ ..|+.+++
T Consensus 275 ------~~L~l~~~-i~----~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 275 ------KTLQVFGI-VP----DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp ------CEEECTTS-SC----TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred ------CEEeccCc-cC----HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 68888877 33 22455554 4888888888888 66766654
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=1.9e-20 Score=175.10 Aligned_cols=234 Identities=21% Similarity=0.174 Sum_probs=163.9
Q ss_pred CCCccEEEeeCCcCc-c----cCccccCCCCCCEEEccCCcCc----cccccc-------CCCCCCcEEEccCCCCCc--
Q psy5270 1 MLYITRITLSHNKLK-E----IPPGLANLVNLEILTLFNNQIE----TLPTSL-------SSLPKLRILNLGMNRLSS-- 62 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~-~----ip~~l~~l~~L~~L~L~~N~l~----~ip~~l-------~~L~~L~~L~L~~N~l~~-- 62 (352)
+++|++|+|++|.++ . ++..+.++++|++|+|++|.+. .+|..+ ..+++|++|+|++|+++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 468999999999998 4 4455889999999999997544 456554 789999999999999985
Q ss_pred ---cccccCCCCCCCEEEccCCCCCCCCCCCccc----cC---------ccCcEEEccCCccc--cch---hhccCcccH
Q psy5270 63 ---LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF----ML---------ETLRALYLGDNDFE--VLP---AEIGNLKNL 121 (352)
Q Consensus 63 ---ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~----~l---------~~L~~L~l~~N~l~--~ip---~~~~nl~~L 121 (352)
+|..+..+++|+.|+|++|.+++ ..+..++ .+ ++|++|++++|+++ .+| ..+.++++|
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGP-QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHH-HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCH-HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 78889999999999999999974 3333343 34 89999999999997 566 466677777
Q ss_pred HHHHHhcchhhHhhcCceEeecc---ccc-cccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCc-ccc
Q psy5270 122 QIILETFLPDMMEKNRGHIVGIS---SMA-GIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF-MVD 196 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~is---s~~-~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~-~~~ 196 (352)
+.|+++... +.... ... .+..++.+.....+.+.+.... . +.+|. ...
T Consensus 190 ~~L~L~~n~---------l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~---------------~~l~~~l~~ 242 (386)
T 2ca6_A 190 HTVKMVQNG---------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---S---------------SALAIALKS 242 (386)
T ss_dssp CEEECCSSC---------CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---H---------------HHHHHHGGG
T ss_pred CEEECcCCC---------CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---H---------------HHHHHHHcc
Confidence 776655411 11000 001 2334455544444444332110 0 11121 123
Q ss_pred cCCccCcccccccCCC-----cccCC--CCCcccchhhhhhhhhhcccccccc---CCCchh-hhhHHhHhhhCCCCcce
Q psy5270 197 TGLCKNPKIKMNRLSS-----LPRGF--GAFPVLEAFSFTTILDLTYNNLNEQ---SLPGNF-FMLETLRALYLGDNDFE 265 (352)
Q Consensus 197 ~~~l~~l~l~~n~l~~-----ip~~~--~~l~~L~~~~~L~~L~ls~N~l~g~---~iP~~~-~~l~~L~~L~Ls~N~l~ 265 (352)
.+.++.+++++|+++. +|..+ +.++.| +.|+|++|.+++. .+|..+ .++++|++|++++|.++
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L------~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL------QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC------CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe------EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 4567889999999983 45554 346666 7999999999851 278888 67899999999999999
Q ss_pred -ecc
Q psy5270 266 -VLP 268 (352)
Q Consensus 266 -~iP 268 (352)
..|
T Consensus 317 ~~~~ 320 (386)
T 2ca6_A 317 EEDD 320 (386)
T ss_dssp TTSH
T ss_pred cchh
Confidence 443
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.9e-18 Score=143.73 Aligned_cols=121 Identities=26% Similarity=0.395 Sum_probs=105.7
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccc--cCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~--l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N 81 (352)
+.+++++|++++||..+.. ++++|++++|+++.+|+. ++.+++|++|+|++|+++.+ |..|+++++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6799999999999998765 899999999999987653 89999999999999999966 678999999999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCcccc-chhhccCcccHHHHHHhc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIILETF 128 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~-ip~~~~nl~~L~~L~l~~ 128 (352)
++++ ..|..|.++++|++|++++|+++. +|..++.+++|++++++.
T Consensus 89 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 89 KIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 9998 567779999999999999999995 477888888887766554
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=142.58 Aligned_cols=121 Identities=32% Similarity=0.452 Sum_probs=106.1
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNL 83 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l 83 (352)
+.+++++|+++++|.++. ++|++|++++|+++.+|..+..+++|+.|+|++|+++.+++ .|.++++|+.|+|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 578999999999998775 58999999999999999999999999999999999998765 599999999999999999
Q ss_pred CCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhc
Q psy5270 84 NEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETF 128 (352)
Q Consensus 84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~ 128 (352)
++ ..|..|..+++|++|+|++|+++.+|. .|.++++|+.++++.
T Consensus 91 ~~-i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 RC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CB-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CE-eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 97 556789999999999999999998877 577787777665543
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=4.7e-21 Score=183.01 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=35.2
Q ss_pred CCccCcccccccCCC-----cccCCCCCcccchhhhhhhhhhccccccccCCCchhhhh-----HHhHhhhCCCCcce-e
Q psy5270 198 GLCKNPKIKMNRLSS-----LPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFML-----ETLRALYLGDNDFE-V 266 (352)
Q Consensus 198 ~~l~~l~l~~n~l~~-----ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l-----~~L~~L~Ls~N~l~-~ 266 (352)
..++.+++++|+++. +|..+..++.| +.||+++|.+++ ..+..+... ++|++|++++|.++ .
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L------~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESL------KELSLAGNELGD-EGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTC------CEEECTTCCCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCc------ceEECCCCCCch-HHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 345556666666653 44443333333 455555555543 222233222 34555555555544 1
Q ss_pred ----cchhhhcccccccc
Q psy5270 267 ----LPAEIGNLKNLQIM 280 (352)
Q Consensus 267 ----iP~~l~~l~~L~~l 280 (352)
+|..+.++++|+.+
T Consensus 329 ~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp GHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHHHhhCCCccEE
Confidence 34444444555544
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=2.1e-17 Score=153.02 Aligned_cols=113 Identities=31% Similarity=0.461 Sum_probs=101.7
Q ss_pred CCccEEEeeCCcCcccCcc-cc-CCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEE
Q psy5270 2 LYITRITLSHNKLKEIPPG-LA-NLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLD 77 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~-l~-~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~ 77 (352)
+.++.|||++|+|+.+|+. +. ++++|++|+|++|+++.++ ..|.++++|++|+|++|+++.+|+ .|.++++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3588999999999977765 65 8999999999999999775 579999999999999999998876 589999999999
Q ss_pred ccCCCCCCCCCCCccccCccCcEEEccCCccccchhhc
Q psy5270 78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI 115 (352)
Q Consensus 78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~ 115 (352)
|++|++++ ..|..|.++++|++|+|++|+++.+|..+
T Consensus 119 L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 119 LYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 99999997 56889999999999999999999888754
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.70 E-value=9.2e-18 Score=139.38 Aligned_cols=124 Identities=23% Similarity=0.267 Sum_probs=107.7
Q ss_pred CCCccEEEeeCCcCcccCccccCCC-CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccccc-CCCCCCCEEEc
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLV-NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGF-GAFPVLEVLDL 78 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~-~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~-~~l~~L~~L~L 78 (352)
+++|++|++++|+++.+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++|+++.+|+.+ +.+++|+.|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 3578999999999998865 55555 999999999999987 68999999999999999999998765 89999999999
Q ss_pred cCCCCCCCCCCC--ccccCccCcEEEccCCccccchhh----ccCcccHHHHHHhc
Q psy5270 79 TYNNLNEQSLPG--NFFMLETLRALYLGDNDFEVLPAE----IGNLKNLQIILETF 128 (352)
Q Consensus 79 s~N~l~g~~~p~--~~~~l~~L~~L~l~~N~l~~ip~~----~~nl~~L~~L~l~~ 128 (352)
++|+++. +|. .++.+++|++|++++|.++.+|.. ++.+++|+.++++.
T Consensus 96 ~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 96 TNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 9999964 787 899999999999999999988875 77777777666554
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=7.5e-17 Score=135.85 Aligned_cols=106 Identities=28% Similarity=0.458 Sum_probs=98.5
Q ss_pred CccEEEeeCCcCcccCcc--ccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270 3 YITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL 78 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~--l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L 78 (352)
+|++|++++|+++.+|+. ++++++|++|+|++|+++.+ |..|.++++|++|+|++|+++.+++ .|+++++|+.|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 789999999999988764 89999999999999999966 7899999999999999999997765 4899999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccc
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~ 109 (352)
++|++++ ..|..|+.+++|++|++++|.++
T Consensus 110 ~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISC-VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCE-ECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCe-eCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999998 67999999999999999999998
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=6.2e-17 Score=158.30 Aligned_cols=111 Identities=25% Similarity=0.300 Sum_probs=104.2
Q ss_pred CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN 82 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~ 82 (352)
.|+.|+|++|.|+.+|. ++++++|++|+|++|+++.+|..++++++|+.|+|++|+++.+| .++++++|+.|+|++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 57899999999999997 99999999999999999999999999999999999999999999 89999999999999999
Q ss_pred CCCCCC-CCccccCccCcEEEccCCccccchhhcc
Q psy5270 83 LNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIG 116 (352)
Q Consensus 83 l~g~~~-p~~~~~l~~L~~L~l~~N~l~~ip~~~~ 116 (352)
+++ .. |..|+.+++|+.|++++|+++.+|+.+.
T Consensus 520 l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 520 LQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred CCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 998 44 9999999999999999999998776544
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.68 E-value=2.8e-16 Score=130.18 Aligned_cols=110 Identities=32% Similarity=0.504 Sum_probs=98.0
Q ss_pred cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCC
Q psy5270 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNN 82 (352)
Q Consensus 5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~ 82 (352)
+.+++++|+++++|..+. ++|++|+|++|+++.+ |..|+++++|++|+|++|+|+.+|.. |+++++|+.|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 679999999999999886 7999999999999976 66899999999999999999999886 6899999999999999
Q ss_pred CCCCCCCC-ccccCccCcEEEccCCccccchhhccCc
Q psy5270 83 LNEQSLPG-NFFMLETLRALYLGDNDFEVLPAEIGNL 118 (352)
Q Consensus 83 l~g~~~p~-~~~~l~~L~~L~l~~N~l~~ip~~~~nl 118 (352)
+++ +|. .|..+++|++|++++|.++..|..+..+
T Consensus 93 l~~--l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 93 LKS--IPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp CCC--CCTTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred cce--eCHHHhccccCCCEEEeCCCCcccccccHHHH
Confidence 996 555 5999999999999999999766555433
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=132.18 Aligned_cols=107 Identities=32% Similarity=0.462 Sum_probs=97.9
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT 79 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls 79 (352)
++|++|++++|+|+.+|..|.++++|++|+|++|+++.++ ..|.++++|+.|+|++|+++.+|+ .|+++++|+.|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4789999999999999999999999999999999999775 579999999999999999998765 59999999999999
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCccc
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFE 109 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~ 109 (352)
+|++++ ..+..|..+++|++|++++|.+.
T Consensus 111 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISV-VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence 999986 33446889999999999999997
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=2.8e-18 Score=158.94 Aligned_cols=203 Identities=25% Similarity=0.254 Sum_probs=139.2
Q ss_pred CCccEEEeeCCcCcccC-----ccccCCC-CCCEEEccCCcCccc-ccccCCC-----CCCcEEEccCCCCCccc-cc--
Q psy5270 2 LYITRITLSHNKLKEIP-----PGLANLV-NLEILTLFNNQIETL-PTSLSSL-----PKLRILNLGMNRLSSLP-RG-- 66 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip-----~~l~~l~-~L~~L~L~~N~l~~i-p~~l~~L-----~~L~~L~L~~N~l~~ip-~~-- 66 (352)
++|++|||++|.++.++ ..+.+++ +|++|+|++|.++.. +..+..+ ++|++|++++|+++..+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 35899999999998665 5677888 899999999999843 5566664 88999999999998543 32
Q ss_pred --cCCC-CCCCEEEccCCCCCCCCCCCcccc-----CccCcEEEccCCccccc-hhhccCcccHHHHHHhcchhhHhhcC
Q psy5270 67 --FGAF-PVLEVLDLTYNNLNEQSLPGNFFM-----LETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFLPDMMEKNR 137 (352)
Q Consensus 67 --~~~l-~~L~~L~Ls~N~l~g~~~p~~~~~-----l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~ 137 (352)
+..+ ++|+.|++++|++++ ..+..++. .++|++|++++|+++.. +..+..
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-------------------- 160 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ-------------------- 160 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH--------------------
T ss_pred HHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH--------------------
Confidence 4445 789999999999976 44444433 36899999999988732 111110
Q ss_pred ceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc-CCccCcccccccCCCc-cc
Q psy5270 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT-GLCKNPKIKMNRLSSL-PR 215 (352)
Q Consensus 138 g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~-~~l~~l~l~~n~l~~i-p~ 215 (352)
.+ ... ..++.+++++|+++.. +.
T Consensus 161 -------------------------------------~l------------------~~~~~~L~~L~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 161 -------------------------------------IL------------------AAIPANVNSLNLRGNNLASKNCA 185 (362)
T ss_dssp -------------------------------------HH------------------HTSCTTCCEEECTTSCGGGSCHH
T ss_pred -------------------------------------HH------------------hcCCccccEeeecCCCCchhhHH
Confidence 00 001 1457889999999843 32
Q ss_pred CCCCCcccchh-hhhhhhhhcccccccc---CCCchhhhh-HHhHhhhCCCCcceecc-----hhhhcccccccccC
Q psy5270 216 GFGAFPVLEAF-SFTTILDLTYNNLNEQ---SLPGNFFML-ETLRALYLGDNDFEVLP-----AEIGNLKNLQIMLE 282 (352)
Q Consensus 216 ~~~~l~~L~~~-~~L~~L~ls~N~l~g~---~iP~~~~~l-~~L~~L~Ls~N~l~~iP-----~~l~~l~~L~~l~~ 282 (352)
.++.. +..+ ..|+.|||++|.+++. .+|..+..+ ++|++|||++|+++..+ ..+..+++|+.+..
T Consensus 186 ~l~~~--l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 186 ELAKF--LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp HHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred HHHHH--HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 22211 1112 2447999999999751 145566664 58999999999998433 23466788888743
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=3.3e-16 Score=129.27 Aligned_cols=107 Identities=31% Similarity=0.497 Sum_probs=95.7
Q ss_pred ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCC
Q psy5270 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYN 81 (352)
Q Consensus 4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N 81 (352)
.+.+|+++|.++++|..+. ++|++|+|++|+++.+ |..|.++++|++|+|++|+++.+|+. |+++++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5789999999999999875 7999999999999977 66899999999999999999998876 689999999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCccccchh
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 113 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~ 113 (352)
++++ ..|..|.++++|++|+|++|.++..++
T Consensus 89 ~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKS-IPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCC-CCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCE-eCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997 445569999999999999999985443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=1.2e-16 Score=131.37 Aligned_cols=112 Identities=26% Similarity=0.291 Sum_probs=102.0
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcc-cccccCCCCCCcEEEccCCCCCccc--cccCCCCCCCEEE
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIET-LPTSLSSLPKLRILNLGMNRLSSLP--RGFGAFPVLEVLD 77 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~-ip~~l~~L~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L~ 77 (352)
+++|++|++++|.++.+ +.++.+++|++|++++|+++. +|..+..+++|++|++++|+++.+| ..++.+++|+.|+
T Consensus 48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 46899999999999977 889999999999999999995 7888888999999999999999887 6899999999999
Q ss_pred ccCCCCCCCCCCC----ccccCccCcEEEccCCccccchhhc
Q psy5270 78 LTYNNLNEQSLPG----NFFMLETLRALYLGDNDFEVLPAEI 115 (352)
Q Consensus 78 Ls~N~l~g~~~p~----~~~~l~~L~~L~l~~N~l~~ip~~~ 115 (352)
+++|.+++ +|. .+..+++|++|++++|.+.++|.+.
T Consensus 127 l~~N~l~~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 127 LFNCEVTN--LNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp CCSSGGGT--STTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred eeCCcCcc--hHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 99999986 565 8899999999999999999888653
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.5e-16 Score=128.25 Aligned_cols=87 Identities=21% Similarity=0.174 Sum_probs=74.8
Q ss_pred CCCCCEEEccCCcCc--ccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEE
Q psy5270 24 LVNLEILTLFNNQIE--TLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL 101 (352)
Q Consensus 24 l~~L~~L~L~~N~l~--~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L 101 (352)
.++|++|++++|.++ .+|..++.+++|++|++++|+++.+ ..++++++|++|++++|.+++ .+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCEE
Confidence 467899999999998 7888888999999999999999877 678889999999999999987 578888888899999
Q ss_pred EccCCccccch
Q psy5270 102 YLGDNDFEVLP 112 (352)
Q Consensus 102 ~l~~N~l~~ip 112 (352)
++++|+++.+|
T Consensus 94 ~ls~N~i~~~~ 104 (149)
T 2je0_A 94 NLSGNKIKDLS 104 (149)
T ss_dssp ECTTSCCCSHH
T ss_pred ECCCCcCCChH
Confidence 99999888654
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.1e-15 Score=126.91 Aligned_cols=118 Identities=31% Similarity=0.471 Sum_probs=54.6
Q ss_pred EEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCCC
Q psy5270 6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNL 83 (352)
Q Consensus 6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l 83 (352)
.+++++|+++++|..+. ++|++|++++|+++.+|+ .++.+++|++|++++|+++.+|+. |+++++|+.|++++|++
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 44455555554444332 345555555555544332 334455555555555555544432 34455555555555555
Q ss_pred CCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHH
Q psy5270 84 NEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILE 126 (352)
Q Consensus 84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l 126 (352)
++ ..+..++.+++|++|++++|+++.+|.. +.++++|+.+++
T Consensus 89 ~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 89 QS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 43 2223344455555555555555544432 234444444433
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=4.4e-16 Score=129.20 Aligned_cols=110 Identities=37% Similarity=0.550 Sum_probs=96.6
Q ss_pred CCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L 78 (352)
++|++|++++|+++.+|+. ++++++|++|++++|+++.+|+ .++.+++|+.|++++|+++.+|+. ++++++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 5789999999999987764 7899999999999999998765 579999999999999999988765 789999999999
Q ss_pred cCCCCCCCCCCCccccCccCcEEEccCCccccch
Q psy5270 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112 (352)
Q Consensus 79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip 112 (352)
++|++++ ..+..+..+++|++|++++|.++..+
T Consensus 108 ~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 108 DTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCcceE-eCHHHhcCCcccCEEEecCCCeeccC
Confidence 9999986 33445688999999999999998433
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=1.3e-15 Score=126.29 Aligned_cols=106 Identities=23% Similarity=0.295 Sum_probs=97.5
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccccc-CCCCCCcEEEccCCCCCcccc--ccCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSLPR--GFGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l-~~L~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L 78 (352)
++|++||+++|.++.+ +.++++++|++|++++|+++.+|+.+ +.+++|++|++++|+++.+|. .++.+++|+.|++
T Consensus 42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 4899999999999988 78999999999999999999887655 899999999999999999997 7999999999999
Q ss_pred cCCCCCCCCCCCc----cccCccCcEEEccCCcccc
Q psy5270 79 TYNNLNEQSLPGN----FFMLETLRALYLGDNDFEV 110 (352)
Q Consensus 79 s~N~l~g~~~p~~----~~~l~~L~~L~l~~N~l~~ 110 (352)
++|.++. +|.. ++.+++|++||++.|...+
T Consensus 121 ~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 121 LRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSSGGGG--STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCC--cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999975 7875 8999999999999999874
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=3.6e-18 Score=168.08 Aligned_cols=123 Identities=19% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCccEEEeeCCcCc-c----cCccccCCCCCCEEEccCCcCc-----ccccccCCCCCCcEEEccCCCCCccccccCCCC
Q psy5270 2 LYITRITLSHNKLK-E----IPPGLANLVNLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFP 71 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~-~----ip~~l~~l~~L~~L~L~~N~l~-----~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~ 71 (352)
++|++|+|++|.++ . ++..+.++++|++|++++|.++ .++..+.++++|+.|++++|.++.+|..+++++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~ 243 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence 45666666666654 2 2223344556666666666554 223334456666666666665554444444444
Q ss_pred CCCEEEc---------------------------cCCCCCCCCCCCccccCccCcEEEccCCccc--cchhhccCcccHH
Q psy5270 72 VLEVLDL---------------------------TYNNLNEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQ 122 (352)
Q Consensus 72 ~L~~L~L---------------------------s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~--~ip~~~~nl~~L~ 122 (352)
+|+.|++ +++.. + .+|..+..+++|++|++++|.++ .++..+.++++|+
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-N-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-T-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccch-h-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 4444444 44322 2 45666777778888888888876 3334456666666
Q ss_pred HHHH
Q psy5270 123 IILE 126 (352)
Q Consensus 123 ~L~l 126 (352)
.|++
T Consensus 322 ~L~L 325 (592)
T 3ogk_B 322 VLET 325 (592)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5544
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=8.9e-18 Score=142.19 Aligned_cols=122 Identities=30% Similarity=0.397 Sum_probs=91.8
Q ss_pred CccEEEeeCCcCc-ccCc------cccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCE
Q psy5270 3 YITRITLSHNKLK-EIPP------GLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEV 75 (352)
Q Consensus 3 ~L~~L~Ls~N~l~-~ip~------~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~ 75 (352)
.++.++++.+.++ .+|+ .++++++|++|++++|+++.+| .+..+++|+.|++++|+++.+|..++.+++|+.
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence 4455555555555 4444 7888888888888888888777 778888888888888888888877777788888
Q ss_pred EEccCCCCCCCCCCCccccCccCcEEEccCCccccchh--hccCcccHHHHHHhc
Q psy5270 76 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA--EIGNLKNLQIILETF 128 (352)
Q Consensus 76 L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~--~~~nl~~L~~L~l~~ 128 (352)
|++++|++++ +| .++.+++|++|++++|+++.+|. .++++++|++++++.
T Consensus 98 L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 98 LWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred EECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 8888888875 45 57778888888888888886654 677777777776655
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.7e-17 Score=140.47 Aligned_cols=104 Identities=26% Similarity=0.355 Sum_probs=67.5
Q ss_pred CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 81 (352)
++|++|++++|+++.+| .++++++|++|++++|.++.+|..+..+++|+.|++++|+++.+| .++.+++|+.|++++|
T Consensus 48 ~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 48 KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE
T ss_pred CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC
Confidence 45666666666666666 666666666666666666666666666666666666666666665 4666666666666666
Q ss_pred CCCCCCCC--CccccCccCcEEEccCCccc
Q psy5270 82 NLNEQSLP--GNFFMLETLRALYLGDNDFE 109 (352)
Q Consensus 82 ~l~g~~~p--~~~~~l~~L~~L~l~~N~l~ 109 (352)
++++ +| ..+..+++|++|++++|.++
T Consensus 126 ~i~~--~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 126 KITN--WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ECCC--HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCc--hhHHHHHhcCCCCCEEEecCCccc
Confidence 6654 33 25666666666666666665
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=6.6e-17 Score=159.05 Aligned_cols=243 Identities=16% Similarity=0.096 Sum_probs=133.5
Q ss_pred CCccEEEeeCCcCc-ccCccccCC--CCCCEEEccCCc-Cc--ccccccCCCCCCcEEEccCCCCCc-----cccccCCC
Q psy5270 2 LYITRITLSHNKLK-EIPPGLANL--VNLEILTLFNNQ-IE--TLPTSLSSLPKLRILNLGMNRLSS-----LPRGFGAF 70 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~-~ip~~l~~l--~~L~~L~L~~N~-l~--~ip~~l~~L~~L~~L~L~~N~l~~-----ip~~~~~l 70 (352)
++|++|+|++|.++ ..+..++.. .+|++|+|++|. ++ .++....++++|++|+|++|.++. ++..+.++
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 45666666666665 444444432 236666666665 22 233334466777777777776652 33334566
Q ss_pred CCCCEEEccCCCCCC---CCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccc
Q psy5270 71 PVLEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMA 147 (352)
Q Consensus 71 ~~L~~L~Ls~N~l~g---~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~ 147 (352)
++|+.|++++|.+++ ..++..+.++++|+.|++++|.++.+|..++++++|+.+.++... +.+.......
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~ 264 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN-------EDIGMPEKYM 264 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCC-------CCTTCTTSSS
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccc-------cccchHHHHH
Confidence 777777777777752 123444556777777777777777777766666666655443200 0000000001
Q ss_pred cccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCC--CcccCCCCCcccc
Q psy5270 148 GIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLS--SLPRGFGAFPVLE 224 (352)
Q Consensus 148 ~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~--~ip~~~~~l~~L~ 224 (352)
.+...+.+..... +.+. .+.+|..+ ....++.++++.|.++ .++..+..+++|
T Consensus 265 ~l~~~~~L~~L~l----------------------~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L- 320 (592)
T 3ogk_B 265 NLVFPRKLCRLGL----------------------SYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL- 320 (592)
T ss_dssp CCCCCTTCCEEEE----------------------TTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC-
T ss_pred HhhccccccccCc----------------------cccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC-
Confidence 1111122111111 1110 11122222 3456777888888876 233334555555
Q ss_pred hhhhhhhhhhccccccccCCCchhhhhHHhHhhhCC-----------CCcce--ecchhhhccccccccc
Q psy5270 225 AFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLG-----------DNDFE--VLPAEIGNLKNLQIML 281 (352)
Q Consensus 225 ~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls-----------~N~l~--~iP~~l~~l~~L~~l~ 281 (352)
+.|+++ |++....++..+..+++|++|+++ .|.++ .++.-...+++|+.+.
T Consensus 321 -----~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 321 -----EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp -----CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred -----CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 688888 455443566666778889999998 46777 4555566788888874
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=1.2e-13 Score=126.74 Aligned_cols=102 Identities=25% Similarity=0.311 Sum_probs=89.6
Q ss_pred EEEeeCC-cCcccCccccCCCCCCEEEccC-CcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCC
Q psy5270 6 RITLSHN-KLKEIPPGLANLVNLEILTLFN-NQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYN 81 (352)
Q Consensus 6 ~L~Ls~N-~l~~ip~~l~~l~~L~~L~L~~-N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N 81 (352)
.++++++ +|+.||+ |+.+++|++|+|++ |+++.+| ..|++|++|+.|+|++|+|+.+|+ .|+++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 5789998 8999999 99999999999996 9999776 589999999999999999997755 6899999999999999
Q ss_pred CCCCCCCCCccccCccCcEEEccCCcccc
Q psy5270 82 NLNEQSLPGNFFMLETLRALYLGDNDFEV 110 (352)
Q Consensus 82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ 110 (352)
+|++ +|..+....+|++|+|++|.+..
T Consensus 91 ~l~~--~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALES--LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSC--CCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccce--eCHHHcccCCceEEEeeCCCccC
Confidence 9986 56554443349999999999983
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=3.7e-14 Score=116.86 Aligned_cols=100 Identities=28% Similarity=0.367 Sum_probs=87.3
Q ss_pred CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270 26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG 104 (352)
Q Consensus 26 ~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~ 104 (352)
..+++++++|.++.+|..+. ++|++|+|++|+++.+ |..|+++++|++|+|++|++++ ..|..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECC
Confidence 36899999999999998774 7899999999999987 5669999999999999999997 445567899999999999
Q ss_pred CCccccchh-hccCcccHHHHHHhc
Q psy5270 105 DNDFEVLPA-EIGNLKNLQIILETF 128 (352)
Q Consensus 105 ~N~l~~ip~-~~~nl~~L~~L~l~~ 128 (352)
+|+|+.+|+ .|.++++|+.++++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCC
Confidence 999998877 588888888776654
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=5.7e-14 Score=116.21 Aligned_cols=98 Identities=27% Similarity=0.371 Sum_probs=86.3
Q ss_pred CCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCCCCCCCCCC-ccccCccCcEEEcc
Q psy5270 27 LEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPG-NFFMLETLRALYLG 104 (352)
Q Consensus 27 L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~g~~~p~-~~~~l~~L~~L~l~ 104 (352)
-+.+++++|+++.+|..+. ++|++|+|++|+++.+ |..|+++++|+.|+|++|+|++ +|. .|.++++|++|+|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECC
Confidence 4789999999999998775 8999999999999977 5679999999999999999997 555 57899999999999
Q ss_pred CCccccchhh-ccCcccHHHHHHhc
Q psy5270 105 DNDFEVLPAE-IGNLKNLQIILETF 128 (352)
Q Consensus 105 ~N~l~~ip~~-~~nl~~L~~L~l~~ 128 (352)
+|+|+.+|+. |+++++|+.++++.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCccceeCHHHhccccCCCEEEeCC
Confidence 9999988875 88888888776654
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=1.7e-14 Score=131.71 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=55.2
Q ss_pred CCCccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCccccc-ccCC--------CCCCcEEEccCCCCCccccc-cC
Q psy5270 1 MLYITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIETLPT-SLSS--------LPKLRILNLGMNRLSSLPRG-FG 68 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~--------L~~L~~L~L~~N~l~~ip~~-~~ 68 (352)
+++|+.|||++|+++ ..++. .++.++.+.+..|. ||+ .|.+ +++|+.+++.. +++.|++. |.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~--~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG--TYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS--SSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCccc--cccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 468999999999998 33322 11223444444442 222 3444 66666666666 66666543 66
Q ss_pred CCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccC
Q psy5270 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGD 105 (352)
Q Consensus 69 ~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~ 105 (352)
++++|+.++++.|.+.. .-+..|.++.++..+..+.
T Consensus 122 ~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTC
T ss_pred cCcccceEEcCCCCccc-cchhhhcCCCceEEecCcc
Confidence 66666666666666653 2344555555555555444
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=8.5e-16 Score=151.11 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=46.7
Q ss_pred cCCccCcccccccCC--CcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhC---------CCCcce
Q psy5270 197 TGLCKNPKIKMNRLS--SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYL---------GDNDFE 265 (352)
Q Consensus 197 ~~~l~~l~l~~n~l~--~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~L---------s~N~l~ 265 (352)
...++.++++.|.++ .++..+..+++| +.|++++| ++...++.....+++|++|++ +.|.++
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L------~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKL------QRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTC------CEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCc------CEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 456777888888766 233323445555 68888887 543234444456788888887 445676
Q ss_pred -ecchhh-hcccccccc
Q psy5270 266 -VLPAEI-GNLKNLQIM 280 (352)
Q Consensus 266 -~iP~~l-~~l~~L~~l 280 (352)
.....+ .++++|+.+
T Consensus 361 ~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESV 377 (594)
T ss_dssp HHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHhchhHHHH
Confidence 333333 347777776
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=1.2e-12 Score=120.24 Aligned_cols=98 Identities=21% Similarity=0.217 Sum_probs=84.0
Q ss_pred CEEEccCC-cCcccccccCCCCCCcEEEccC-CCCCccc-cccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270 28 EILTLFNN-QIETLPTSLSSLPKLRILNLGM-NRLSSLP-RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG 104 (352)
Q Consensus 28 ~~L~L~~N-~l~~ip~~l~~L~~L~~L~L~~-N~l~~ip-~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~ 104 (352)
..++++++ +++.||. +..+++|+.|+|++ |+|+.+| ..|+++++|+.|+|++|+|++ ..|..|+++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCC
Confidence 45799998 9999999 99999999999996 9999887 469999999999999999998 677889999999999999
Q ss_pred CCccccchhhccCcccHHHHHHh
Q psy5270 105 DNDFEVLPAEIGNLKNLQIILET 127 (352)
Q Consensus 105 ~N~l~~ip~~~~nl~~L~~L~l~ 127 (352)
+|+|+.+|+.+.....|+.|+++
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECC
T ss_pred CCccceeCHHHcccCCceEEEee
Confidence 99999888754433336555444
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=1.5e-13 Score=135.00 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=69.3
Q ss_pred CCccEEEeeCCcC-cc---cCcc------------ccCCCCCCEEEccCCcCc-ccccccC-CCCCCcEEEccCC-CCCc
Q psy5270 2 LYITRITLSHNKL-KE---IPPG------------LANLVNLEILTLFNNQIE-TLPTSLS-SLPKLRILNLGMN-RLSS 62 (352)
Q Consensus 2 ~~L~~L~Ls~N~l-~~---ip~~------------l~~l~~L~~L~L~~N~l~-~ip~~l~-~L~~L~~L~L~~N-~l~~ 62 (352)
++|++|+++++.. .. .|.. ...+++|++|+|++|.++ ..+..+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 5678888887652 11 2221 235677888888888877 4445554 5778888888887 5552
Q ss_pred --cccccCCCCCCCEEEccCCCCCCCCCCCccc----cCccCcEEEccCCc
Q psy5270 63 --LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF----MLETLRALYLGDND 107 (352)
Q Consensus 63 --ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~----~l~~L~~L~l~~N~ 107 (352)
++..+.++++|+.|++++|.+++ ..+..+. .+++|++|++++|.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDD-VSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEEC-CCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCC-cchHHHHHHhhcCCcCcEEEecccC
Confidence 55555577888888888888765 3333333 55678888888876
No 142
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=99.06 E-value=8.1e-11 Score=94.89 Aligned_cols=71 Identities=49% Similarity=1.043 Sum_probs=65.1
Q ss_pred ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5270 278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSW 349 (352)
Q Consensus 278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (352)
+.+..+++.+..|.|...+|++ .+|....|+++++|+|+++|||||.|++++.+++++++|+++.+..+.|
T Consensus 97 e~~p~pk~VIAvGsCA~~GGi~-~~y~~~~gvd~iipVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~~~~~~ 167 (181)
T 3i9v_6 97 EQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERG 167 (181)
T ss_dssp HSSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTCCBCTTS
T ss_pred HHcCCCceEEEeecccccCCCC-CCCcccCCcccCCCccEEeeCCCCCHHHHHHHHHHHHHHHhhccccccc
Confidence 4557899999999999999999 7899999999999999999999999999999999999999988766554
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=9.2e-10 Score=100.13 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=90.3
Q ss_pred CCCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccccc--------------c---------------------
Q psy5270 1 MLYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS--------------L--------------------- 44 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip~~--------------l--------------------- 44 (352)
|++|+.+++++ .++.|++. |.+|++|+.+++++|.+..|++. .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 46788888888 78888764 88888888888888875322210 0
Q ss_pred --------------------------------------------CCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEcc
Q psy5270 45 --------------------------------------------SSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLT 79 (352)
Q Consensus 45 --------------------------------------------~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls 79 (352)
..+++|+.+++++|+++.||+. |.++++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0267888999998889888875 8888899999998
Q ss_pred CCCCCCCCCCCccccCccCc-EEEccCCccccch-hhccCcccHHHHHH
Q psy5270 80 YNNLNEQSLPGNFFMLETLR-ALYLGDNDFEVLP-AEIGNLKNLQIILE 126 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~-~L~l~~N~l~~ip-~~~~nl~~L~~L~l 126 (352)
.| ++. .-+..|.++.+|+ .+++.+ +++.|+ .+|.++.+|+.+++
T Consensus 259 ~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 259 HN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred cc-cce-ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 87 654 2345788888898 999988 777775 47888888877654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.89 E-value=3.4e-11 Score=111.60 Aligned_cols=127 Identities=19% Similarity=0.187 Sum_probs=66.6
Q ss_pred CCccEEEeeCCcCccc-Ccc----cc-CCCCCCEEEccCCcCcc--cccccCCCCCCcEEEccCCCCCcc-----cccc-
Q psy5270 2 LYITRITLSHNKLKEI-PPG----LA-NLVNLEILTLFNNQIET--LPTSLSSLPKLRILNLGMNRLSSL-----PRGF- 67 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~i-p~~----l~-~l~~L~~L~L~~N~l~~--ip~~l~~L~~L~~L~L~~N~l~~i-----p~~~- 67 (352)
+.|+.|+|++|.++.. ... +. +.++|++|+|++|.++. +..-...+++|+.|+|++|+++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566777777776621 122 22 22567777777776651 222222345666677777666521 1111
Q ss_pred CCCCCCCEEEccCCCCCC---CCCCCccccCccCcEEEccCCcccc-----chhhccCcccHHHHHHhc
Q psy5270 68 GAFPVLEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFEV-----LPAEIGNLKNLQIILETF 128 (352)
Q Consensus 68 ~~l~~L~~L~Ls~N~l~g---~~~p~~~~~l~~L~~L~l~~N~l~~-----ip~~~~nl~~L~~L~l~~ 128 (352)
...++|+.|+|++|.++. ..++..+..+++|++|+|++|.++. ++..+.+.++|+.|+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 234566666666666643 0123333455666666666666651 344455555555555443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=5.6e-09 Score=97.56 Aligned_cols=105 Identities=16% Similarity=0.259 Sum_probs=73.7
Q ss_pred cCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCCCCCCCC
Q psy5270 13 KLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLP 89 (352)
Q Consensus 13 ~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~g~~~p 89 (352)
.++.|++ .|.++ +|+.+++..| ++.|+. +|.+ .+|+.+.+.. +++.|+. .|.++++|+.++++.|+++. +|
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~ 196 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK--LP 196 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--EC
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--ec
Confidence 3445554 36664 7888888776 777754 5666 4688888875 6777764 48888888899988888874 66
Q ss_pred CccccCccCcEEEccCCccccchh-hccCcccHHHH
Q psy5270 90 GNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQII 124 (352)
Q Consensus 90 ~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L 124 (352)
......++|+.+.+..+ ++.|+. +|.++.+|+.+
T Consensus 197 ~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 197 ASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp TTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred hhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 65445688888888744 776655 67777766654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=3.5e-10 Score=104.74 Aligned_cols=127 Identities=18% Similarity=0.171 Sum_probs=89.1
Q ss_pred CCccEEEeeCCcCc-ccCccc-cCCCCCCEEEccCCcCccc-cccc-----CCCCCCcEEEccCCCCCc-----cccccC
Q psy5270 2 LYITRITLSHNKLK-EIPPGL-ANLVNLEILTLFNNQIETL-PTSL-----SSLPKLRILNLGMNRLSS-----LPRGFG 68 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~-~ip~~l-~~l~~L~~L~L~~N~l~~i-p~~l-----~~L~~L~~L~L~~N~l~~-----ip~~~~ 68 (352)
++|++|||++|.++ .-...+ ..+++|++|+|++|.++.. ...+ ...++|+.|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 47889999999887 322222 3456788999999988732 2222 346789999999998873 455567
Q ss_pred CCCCCCEEEccCCCCCCC---CCCCccccCccCcEEEccCCcccc-----chhhccCcccHHHHHHhc
Q psy5270 69 AFPVLEVLDLTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFEV-----LPAEIGNLKNLQIILETF 128 (352)
Q Consensus 69 ~l~~L~~L~Ls~N~l~g~---~~p~~~~~l~~L~~L~l~~N~l~~-----ip~~~~nl~~L~~L~l~~ 128 (352)
..++|+.|+|++|.++.. .++..+...++|++|+|++|.++. +...+...++|+.|+++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 788899999999988641 124556677789999999998872 444555566677776665
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=6.1e-09 Score=97.34 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=85.6
Q ss_pred CccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270 3 YITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 80 (352)
+|+.+++..| ++.|++. |.+ .+|+.+.+.+ .++.|+ ..|.++++|+.++++.|+++.||......++|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 5788888766 7788764 666 4799999986 677775 589999999999999999999988755578999999985
Q ss_pred CCCCCCCCCCccccCccCcEEEccCCccccchh-hccC
Q psy5270 81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGN 117 (352)
Q Consensus 81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~n 117 (352)
+ ++. .-...|.++++|+.+++..| ++.|+. +|.+
T Consensus 213 ~-l~~-I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~ 247 (401)
T 4fdw_A 213 T-LKE-IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE 247 (401)
T ss_dssp T-CCE-ECTTTTTTCTTCCCEECCTT-CCEECTTTTTT
T ss_pred c-hhe-ehhhHhhCCCCCCEEecCCC-ccCcccccccc
Confidence 5 654 23457889999999999875 666654 4444
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=2.2e-09 Score=89.34 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCccEEEeeCC-cCc-c----cCccccCCCCCCEEEccCCcCcc-----cccccCCCCCCcEEEccCCCCCc-----ccc
Q psy5270 2 LYITRITLSHN-KLK-E----IPPGLANLVNLEILTLFNNQIET-----LPTSLSSLPKLRILNLGMNRLSS-----LPR 65 (352)
Q Consensus 2 ~~L~~L~Ls~N-~l~-~----ip~~l~~l~~L~~L~L~~N~l~~-----ip~~l~~L~~L~~L~L~~N~l~~-----ip~ 65 (352)
+.|++|+|++| .+. + +...+...++|++|+|++|.++. +...+...++|++|+|++|.++. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 56888888888 776 2 44556677788888888888862 34455666778888888888872 456
Q ss_pred ccCCCCCCCEEEc--cCCCCCCC---CCCCccccCccCcEEEccCCccc
Q psy5270 66 GFGAFPVLEVLDL--TYNNLNEQ---SLPGNFFMLETLRALYLGDNDFE 109 (352)
Q Consensus 66 ~~~~l~~L~~L~L--s~N~l~g~---~~p~~~~~l~~L~~L~l~~N~l~ 109 (352)
.+...++|+.|+| ++|.++.. .+...+...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6777778888888 77887641 02233445577888888888876
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=4.3e-09 Score=92.34 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=50.4
Q ss_pred EEccCCcCccccc----ccCCCCCCcEEEccCCCCCcc---ccccCCCCCCCEEEccCCCCCCCCCCCccccCc--cCcE
Q psy5270 30 LTLFNNQIETLPT----SLSSLPKLRILNLGMNRLSSL---PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE--TLRA 100 (352)
Q Consensus 30 L~L~~N~l~~ip~----~l~~L~~L~~L~L~~N~l~~i---p~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~--~L~~ 100 (352)
++++.|+...++. ...++++|+.|+|++|+|+.+ |..++.+++|+.|+|++|++++ + ..+..+. +|++
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcce
Confidence 5666665433332 224567777777777777744 3455677777777777777765 2 3445454 7777
Q ss_pred EEccCCccc-cch
Q psy5270 101 LYLGDNDFE-VLP 112 (352)
Q Consensus 101 L~l~~N~l~-~ip 112 (352)
|+|++|.+. .+|
T Consensus 225 L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 225 LWLDGNSLCDTFR 237 (267)
T ss_dssp EECTTSTTGGGCS
T ss_pred EEccCCcCccccC
Confidence 777777776 344
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=8.9e-08 Score=83.92 Aligned_cols=94 Identities=29% Similarity=0.276 Sum_probs=73.8
Q ss_pred EEeeCCcCcccCcc----ccCCCCCCEEEccCCcCccc---ccccCCCCCCcEEEccCCCCCccccccCCCC--CCCEEE
Q psy5270 7 ITLSHNKLKEIPPG----LANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGMNRLSSLPRGFGAFP--VLEVLD 77 (352)
Q Consensus 7 L~Ls~N~l~~ip~~----l~~l~~L~~L~L~~N~l~~i---p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~--~L~~L~ 77 (352)
++++.|....++.. ..++++|+.|+|++|+++.+ |..+..+++|+.|+|++|+|+.+ .++..+. +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 66777865544432 25688999999999999854 46677899999999999999976 3344444 899999
Q ss_pred ccCCCCCCCCCCC-------ccccCccCcEEE
Q psy5270 78 LTYNNLNEQSLPG-------NFFMLETLRALY 102 (352)
Q Consensus 78 Ls~N~l~g~~~p~-------~~~~l~~L~~L~ 102 (352)
|++|.+.+ .+|. .+..+++|+.||
T Consensus 227 L~~Npl~~-~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCD-TFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGG-GCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCcc-ccCcchhHHHHHHHHCcccCeEC
Confidence 99999987 6774 367788999886
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.32 E-value=3.7e-08 Score=81.83 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=72.8
Q ss_pred cccCCCCCCEEEccCC-cCc-----ccccccCCCCCCcEEEccCCCCCc-----cccccCCCCCCCEEEccCCCCCCC--
Q psy5270 20 GLANLVNLEILTLFNN-QIE-----TLPTSLSSLPKLRILNLGMNRLSS-----LPRGFGAFPVLEVLDLTYNNLNEQ-- 86 (352)
Q Consensus 20 ~l~~l~~L~~L~L~~N-~l~-----~ip~~l~~L~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~Ls~N~l~g~-- 86 (352)
.+...++|++|+|++| .+. .+...+...++|++|+|++|+++. +...+...++|+.|+|++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3667889999999999 887 245567788999999999999972 455566678899999999999751
Q ss_pred -CCCCccccCccCcEEEc--cCCccc
Q psy5270 87 -SLPGNFFMLETLRALYL--GDNDFE 109 (352)
Q Consensus 87 -~~p~~~~~l~~L~~L~l--~~N~l~ 109 (352)
.+...+...++|++|+| ++|.++
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 13456677789999999 889998
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=1.9e-07 Score=85.80 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=59.7
Q ss_pred CCccEEEeeCCcCc----------ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC-cccccc--C
Q psy5270 2 LYITRITLSHNKLK----------EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGF--G 68 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~----------~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~--~ 68 (352)
++|+.|.+..+... .+++.+..+++|+.|+|++|.-..+++ + .+++|+.|++..+.++ .....+ .
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 46677766554321 123334556677777776663123333 2 2566777777666655 211222 2
Q ss_pred CCCCCCEEEccC--CCCCCC----CCCCcc--ccCccCcEEEccCCccc-cchhhc---cCcccHHHHHHh
Q psy5270 69 AFPVLEVLDLTY--NNLNEQ----SLPGNF--FMLETLRALYLGDNDFE-VLPAEI---GNLKNLQIILET 127 (352)
Q Consensus 69 ~l~~L~~L~Ls~--N~l~g~----~~p~~~--~~l~~L~~L~l~~N~l~-~ip~~~---~nl~~L~~L~l~ 127 (352)
.+++|+.|+|+. |...|. .+-..+ ..+++|++|++++|.+. ..+..+ ..+++|+.|+++
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 566666666643 221110 000111 23456666666666665 222222 234555555544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=5.4e-07 Score=82.81 Aligned_cols=125 Identities=18% Similarity=0.280 Sum_probs=85.1
Q ss_pred CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCc-ccccccC--CCCCCcEEEccC--CC------CCcccccc--
Q psy5270 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE-TLPTSLS--SLPKLRILNLGM--NR------LSSLPRGF-- 67 (352)
Q Consensus 1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~--~L~~L~~L~L~~--N~------l~~ip~~~-- 67 (352)
+++|+.|++++|.-..+|+ +. +++|+.|+|..|.+. ..-..++ .+++|+.|+|+. |. +..+.+.+
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 4789999999884225555 43 789999999998886 3223343 789999999853 22 11222223
Q ss_pred CCCCCCCEEEccCCCCCCCCCCCccc---cCccCcEEEccCCcccc-----chhhccCcccHHHHHHhc
Q psy5270 68 GAFPVLEVLDLTYNNLNEQSLPGNFF---MLETLRALYLGDNDFEV-----LPAEIGNLKNLQIILETF 128 (352)
Q Consensus 68 ~~l~~L~~L~Ls~N~l~g~~~p~~~~---~l~~L~~L~l~~N~l~~-----ip~~~~nl~~L~~L~l~~ 128 (352)
+.+++|+.|+|++|.+.. ..+..+. .+++|++|+|+.|.++. ++..+.++++|+.|+++.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp TTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred CCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 358899999999998864 3333333 47899999999999983 444445566666665554
No 154
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=97.93 E-value=2.1e-06 Score=74.62 Aligned_cols=61 Identities=30% Similarity=0.500 Sum_probs=53.5
Q ss_pred cccCCceeeeccccccCCcccccccc--cccCCCcccc---c-ceecCCCCCCHHHHHHHHHHHHHH
Q psy5270 279 IMLEPRWVISMGSCANGGGYYHYSYS--VVRGCDRIIP---V-DIYVPGCPPTAEALMYGILQLQKK 339 (352)
Q Consensus 279 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~-~~~~~gcpp~~~~~~~~~~~~~~~ 339 (352)
....+.+.+..|.|...+|++...++ ...|++.+++ + |+++|||||.|.+++.+|++++..
T Consensus 101 ~~~~ak~VIAvGsCA~~GGi~a~~~n~t~~~gv~~vv~~~~vpdi~IPGCPP~Pe~i~~~l~~ll~~ 167 (267)
T 1wui_S 101 ILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKN 167 (267)
T ss_dssp HGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHH
T ss_pred HhccCCEEEEeeeccccCCCCCCcCCCcCCCCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 34678899999999999999988777 5679999998 6 999999999999999999997643
No 155
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=97.92 E-value=1.8e-06 Score=74.86 Aligned_cols=71 Identities=25% Similarity=0.414 Sum_probs=57.7
Q ss_pred cccCCceeeeccccccCCccccc--ccccccCCCcccc----cceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270 279 IMLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRIIP----VDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR 351 (352)
Q Consensus 279 ~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
....+.+.+..|.|...+|++.. ++....|++.+++ .|+++|||||.|.+++.+|+++++.. ...+-+|.|
T Consensus 99 ~~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~~l~~~~~~di~IPGCPP~Pe~i~~~l~~ll~~~--~p~Ld~~~R 175 (264)
T 1yq9_A 99 VAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLTKG--MPELDKQGR 175 (264)
T ss_dssp HGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHTC--SCCBCTTSC
T ss_pred HhccCCEEEEeccccccCCCCCCCCCCccccChhHhccCCCCeEEEEECCCCCHHHHHHHHHHHHhCC--CCCccccCC
Confidence 34678899999999999999876 5556778888887 79999999999999999999988765 334544443
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.92 E-value=1.6e-05 Score=73.76 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=27.5
Q ss_pred CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEcc
Q psy5270 2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLG 56 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~ 56 (352)
++|+.+.+.. .++.|++ +|.++++|+.+++.++ ++.|+. .|.++++|+.+.+.
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 4555666643 3555544 3556666666666543 444432 45555555554443
No 157
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=97.84 E-value=2.5e-06 Score=75.68 Aligned_cols=57 Identities=28% Similarity=0.472 Sum_probs=51.9
Q ss_pred cCCceeeeccccccCCcccccccc--cccCCCcccc---c-ceecCCCCCCHHHHHHHHHHHH
Q psy5270 281 LEPRWVISMGSCANGGGYYHYSYS--VVRGCDRIIP---V-DIYVPGCPPTAEALMYGILQLQ 337 (352)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~-~~~~~gcpp~~~~~~~~~~~~~ 337 (352)
..+.+.+..|.|...+|++...++ ...|++.+++ + |+++|||||.|.+++.+|++++
T Consensus 153 ~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vvp~~~vpdi~IPGCPP~Pe~i~~~l~~lL 215 (317)
T 1h2a_S 153 PKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYL 215 (317)
T ss_dssp GGCSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCBCCCCSSCCHHHHHHHHHHHH
T ss_pred ccCCEEEEeccccccCCcCCCCCCCccCcCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 678899999999999999988665 7889999999 7 9999999999999999999975
No 158
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=97.82 E-value=5.5e-06 Score=73.54 Aligned_cols=62 Identities=21% Similarity=0.447 Sum_probs=53.9
Q ss_pred cCCceeeeccccccCCccccc--ccccccCCCccc-----cc-ceecCCCCCCHHHHHHHHHHHHHHHHh
Q psy5270 281 LEPRWVISMGSCANGGGYYHY--SYSVVRGCDRII-----PV-DIYVPGCPPTAEALMYGILQLQKKVKR 342 (352)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~-~~~~~gcpp~~~~~~~~~~~~~~~~~~ 342 (352)
..+.+.+..|.|...+|++.. ++....|++.++ ++ |+++|||||.|.+++.+|.+++++.++
T Consensus 144 ~~ak~VIAvGsCA~~GGI~a~~~n~t~~~gv~~il~~~~~~vp~I~IPGCPP~Pe~i~~~L~~ll~~~~~ 213 (317)
T 2wpn_A 144 PNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIVGTVVLALDAIKK 213 (317)
T ss_dssp GGEEEEEEEHHHHHHCTGGGSTTCCSCEECHHHHHHHTTCCCCEEEECSSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEeccccccCCCCCCCCCCccccCHHHHhhccCCCCCeEEeeCCCCCHHHHHHHHHHHHhcccc
Confidence 577899999999999998874 555677888877 56 999999999999999999999998864
No 159
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=97.78 E-value=1.1e-05 Score=71.79 Aligned_cols=72 Identities=29% Similarity=0.360 Sum_probs=57.8
Q ss_pred cccCCceeeeccccccCCccccccccc--ccCCCcccc--cceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270 279 IMLEPRWVISMGSCANGGGYYHYSYSV--VRGCDRIIP--VDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR 351 (352)
Q Consensus 279 ~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
....+.+.+..|.|...+|++...++. ..|++.+++ +|+++|||||.|.+++.+|++++... +.-.|-+|.|
T Consensus 102 ~~~~~k~VIAvGtCA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPP~Pe~i~~~l~~ll~~G-~~p~LD~~~R 177 (339)
T 3rgw_S 102 VAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYMLTFD-RIPELDRQGR 177 (339)
T ss_dssp HHTTCSEEEEEHHHHHTCTGGGSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHHHHS-SCCCBCTTSC
T ss_pred HccCCCEEEEeccccccCCcCCCCCCccccCCHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHHhcC-CCCCCCcccC
Confidence 346889999999999999999877654 668999988 99999999999999999999877543 3344444443
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.72 E-value=5.6e-05 Score=58.55 Aligned_cols=53 Identities=28% Similarity=0.402 Sum_probs=25.9
Q ss_pred EEEccCCcCc--ccccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCCC
Q psy5270 29 ILTLFNNQIE--TLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNL 83 (352)
Q Consensus 29 ~L~L~~N~l~--~ip~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l 83 (352)
.++.+++.++ .+|..+. ++|+.|+|++|+|+.||.. |..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4444444444 4443322 1345555555555555443 44455555556655554
No 161
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=97.66 E-value=1.2e-05 Score=70.24 Aligned_cols=60 Identities=30% Similarity=0.448 Sum_probs=52.4
Q ss_pred cccCCceeeeccccccCCccccc--ccccccCCCcccc--cc---eecCCCCCCHHHHHHHHHHHHH
Q psy5270 279 IMLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRIIP--VD---IYVPGCPPTAEALMYGILQLQK 338 (352)
Q Consensus 279 ~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~---~~~~gcpp~~~~~~~~~~~~~~ 338 (352)
....+.+.+..|.|...+|++.. ++....|++.+++ +| +++|||||.|.+++.+|++++.
T Consensus 108 ~~~~ak~VIA~GsCA~~GGi~a~~pn~~~~~gv~~~i~~~vd~pvi~IPGCPP~Pe~i~~~l~~~Ll 174 (283)
T 3ayx_B 108 MADDAKAIISWGSCASWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKVPGCPPIAEVMTGVITYMLT 174 (283)
T ss_dssp HHHTEEEEEEEHHHHHTCTGGGSTTCTTCBCCHHHHHCTTCCSCEEEECSSSCCHHHHHHHHHHHHH
T ss_pred HcccCCEEEEeeeccccCCCCCCCCCCccCcChhHhccccCCCceEEeeCCCCCHHHHHHHHHHHHH
Confidence 33678899999999999999887 5777889999999 89 9999999999999999998443
No 162
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=97.65 E-value=8.1e-06 Score=70.61 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=57.6
Q ss_pred cccCCceeeeccccccCCcccccccc--cccCCCccc--ccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270 279 IMLEPRWVISMGSCANGGGYYHYSYS--VVRGCDRII--PVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR 351 (352)
Q Consensus 279 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
....+++.+..|.|...+|++..+++ ...|++.++ ++|+++|||||.|.+++.+|++++..- +.-.+-+|.|
T Consensus 100 ~~~~~k~VIA~G~CA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPp~Pe~i~~~l~~ll~~G-~~p~Ld~~~R 175 (269)
T 3myr_A 100 TVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFG-RLPELDGYGR 175 (269)
T ss_dssp HHTTCSEEEEEHHHHHHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHHHHHHS-SCCCBCTTSC
T ss_pred HcccCCEEEEeccccccCCccCCCCCccccCCHHHhCCCCCEEEecCCCCCHHHHHHHHHHHHHcC-CCCCCCcccC
Confidence 34688999999999999999877655 466888888 999999999999999999999987432 3344554444
No 163
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=97.62 E-value=1.6e-05 Score=70.62 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=56.0
Q ss_pred cCCceeeeccccccCCcccccccc--cccCCCcccc--cceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270 281 LEPRWVISMGSCANGGGYYHYSYS--VVRGCDRIIP--VDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR 351 (352)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
..+.+.+..|.|...+|++...++ ...|++.+++ +|+++|||||.|..++.+|++++... +.-.+-+|.|
T Consensus 104 ~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vi~~~~di~IPGCPP~Pe~i~~~l~~ll~~G-~~p~LD~~~R 177 (335)
T 3uqy_S 104 AGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFD-RLPDVDRMGR 177 (335)
T ss_dssp HHEEEEEEEHHHHHTCHHHHSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHHHHT-SCCCBCTTSC
T ss_pred cCCCEEEEeccccccCCccCCCCCcccCcCHHHhCCCCCEEEEeCCCCCHHHHHHHHHHHHhCC-CCCCCCccCC
Confidence 567899999999999999887765 4668999987 79999999999999999999876442 3344444443
No 164
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=97.61 E-value=1.4e-05 Score=69.19 Aligned_cols=69 Identities=22% Similarity=0.431 Sum_probs=54.3
Q ss_pred ccCCceeeeccccccCCcccccccc--cccCCCc--ccccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270 280 MLEPRWVISMGSCANGGGYYHYSYS--VVRGCDR--IIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR 351 (352)
Q Consensus 280 l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
...+.+.+..|.|...+|++...++ ...|++. .+|+ +++|||||.|.+++.+|++++... .-.+-+|.|
T Consensus 102 ~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~v~~~PV-i~IPGCPP~Pe~i~~~l~~ll~~~--~p~Ld~~~R 174 (264)
T 1yqw_A 102 AAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKT-INIPGCPPNPINFVGAVVHVLTKG--IPDLDENGR 174 (264)
T ss_dssp HHTCSCEEEESHHHHHCCGGGSTTCTTCEECHHHHHTSCC-EEECSSSCCHHHHHHHHHHHHHTC--CCCBCTTSC
T ss_pred hcCCCEEEEeccccccCCccCCCCCCcccccccccCCCCE-EEeeCCCCCHHHHHHHHHHHHhCC--CccccccCC
Confidence 3678899999999999999877444 4567776 5677 999999999999999999987755 444544433
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=4.3e-05 Score=62.27 Aligned_cols=93 Identities=10% Similarity=0.169 Sum_probs=64.8
Q ss_pred ccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCC-CCCc-cccccCCC----CCCCEEEccCCC-CCCCC
Q psy5270 16 EIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMN-RLSS-LPRGFGAF----PVLEVLDLTYNN-LNEQS 87 (352)
Q Consensus 16 ~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N-~l~~-ip~~~~~l----~~L~~L~Ls~N~-l~g~~ 87 (352)
.+|.....--.|++||++++.++.. -..+..+++|+.|+|++| +++. --..++.+ ++|+.|+|++|. ++. .
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-K 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-H
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-H
Confidence 4565432224699999999998722 245788999999999998 4772 12234443 479999999985 765 2
Q ss_pred CCCccccCccCcEEEccCCc-cc
Q psy5270 88 LPGNFFMLETLRALYLGDND-FE 109 (352)
Q Consensus 88 ~p~~~~~l~~L~~L~l~~N~-l~ 109 (352)
-=..+..+++|++|+++++. ++
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCC
Confidence 22356788999999998875 44
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=3.2e-05 Score=63.02 Aligned_cols=78 Identities=9% Similarity=0.146 Sum_probs=38.3
Q ss_pred CCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCC-CCCCCCCCccccC----ccCcEEEccCCc-cc--cchhhccCcc
Q psy5270 49 KLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNN-LNEQSLPGNFFML----ETLRALYLGDND-FE--VLPAEIGNLK 119 (352)
Q Consensus 49 ~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~-l~g~~~p~~~~~l----~~L~~L~l~~N~-l~--~ip~~~~nl~ 119 (352)
+|+.||++++.++.. -..+..+++|+.|+|++|. ++. .-=..++.+ ++|++|+|+++. ++ ++ ..+.+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 466666666665511 1224556666666666664 432 111123332 246666666653 55 23 2344555
Q ss_pred cHHHHHHhc
Q psy5270 120 NLQIILETF 128 (352)
Q Consensus 120 ~L~~L~l~~ 128 (352)
+|+.|+++.
T Consensus 140 ~L~~L~L~~ 148 (176)
T 3e4g_A 140 NLKYLFLSD 148 (176)
T ss_dssp TCCEEEEES
T ss_pred CCCEEECCC
Confidence 555554443
No 167
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=97.50 E-value=3.3e-05 Score=67.47 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=52.8
Q ss_pred ccCCceeeeccccccCCccccc--ccccccCCCccc-----cc-ceecCCCCCCHHHHHHHHHHHHHHHHh
Q psy5270 280 MLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRII-----PV-DIYVPGCPPTAEALMYGILQLQKKVKR 342 (352)
Q Consensus 280 l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~-~~~~~gcpp~~~~~~~~~~~~~~~~~~ 342 (352)
...+.+.+..|.|...+|++.. ++....|++.++ ++ ++++|||||.|.+++.+|+++..++..
T Consensus 114 ~~~ak~VIAvGtCA~~GGI~a~~~n~t~~~gv~~vl~~~~~~~p~i~IPGCPP~Pe~i~~~L~~l~~~~~~ 184 (283)
T 1cc1_S 114 APKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLN 184 (283)
T ss_dssp GGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCHHHHHHHHHHHHHHHHS
T ss_pred hccCCEEEEEeeccccCCcCCCCCCCcccccHHHHhhcccCCCceEEeeCCCCCHHHHHHHHHHHhhhhhH
Confidence 3678899999999999999876 455667888775 66 899999999999999999997776654
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.47 E-value=0.00021 Score=55.24 Aligned_cols=55 Identities=36% Similarity=0.445 Sum_probs=42.8
Q ss_pred cEEEccCCCCC--ccccccCCCCCCCEEEccCCCCCCCCCCC-ccccCccCcEEEccCCccc
Q psy5270 51 RILNLGMNRLS--SLPRGFGAFPVLEVLDLTYNNLNEQSLPG-NFFMLETLRALYLGDNDFE 109 (352)
Q Consensus 51 ~~L~L~~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~-~~~~l~~L~~L~l~~N~l~ 109 (352)
..++.++++++ .+|..+. ++|+.|+|++|+|+. +|. .|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence 47788888888 8886543 368889999999885 444 5677888999999998876
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.33 E-value=0.0008 Score=61.77 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=79.9
Q ss_pred CccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270 3 YITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT 79 (352)
Q Consensus 3 ~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls 79 (352)
.|+.+.+..+ ++.++. .+.+++.|+.+.+..+ ++.|. ..+.++.+|+.+.+.. +++.++. .|.++++|+.+.+.
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEEC
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccccc
Confidence 4555555433 444543 4677888888888765 55664 3677788888888854 4666655 37788888888888
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHH
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIIL 125 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~ 125 (352)
.+.++. .-...|.++.+|+.+.+..+ ++.|+. +|.++++|+.+.
T Consensus 295 ~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 295 NSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred ccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 877764 22457788888888888654 666654 677777776554
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.31 E-value=0.00088 Score=61.95 Aligned_cols=99 Identities=17% Similarity=0.338 Sum_probs=46.1
Q ss_pred ccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCCCCCCCCCCccccCccC
Q psy5270 21 LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL 98 (352)
Q Consensus 21 l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L 98 (352)
|.+++.|+.+.+..+.. .| ...|.++++|+.+.+. +.++.|+.. |.++++|+.+++..+ ++. .-...|.++.+|
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCCC
Confidence 44555566555544322 22 2244555555555553 344444432 455555555555433 321 112345555555
Q ss_pred cEEEccCCccccchh-hccCcccHHHH
Q psy5270 99 RALYLGDNDFEVLPA-EIGNLKNLQII 124 (352)
Q Consensus 99 ~~L~l~~N~l~~ip~-~~~nl~~L~~L 124 (352)
+.+.+..+ ++.|+. +|.++++|+.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 55555432 444433 45555554433
No 171
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.29 E-value=9.6e-05 Score=61.32 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=61.4
Q ss_pred CCccEEEeeCC-cCc-c----cCccccCCCCCCEEEccCCcCc-----ccccccCCCCCCcEEEccCCCCC-----cccc
Q psy5270 2 LYITRITLSHN-KLK-E----IPPGLANLVNLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMNRLS-----SLPR 65 (352)
Q Consensus 2 ~~L~~L~Ls~N-~l~-~----ip~~l~~l~~L~~L~L~~N~l~-----~ip~~l~~L~~L~~L~L~~N~l~-----~ip~ 65 (352)
+.|+.|+|++| +|. + |-..+..-+.|+.|+|++|++. .|-..+..-+.|+.|+|++|.|+ .|-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 35777777764 664 1 3344555567777777777776 12334445566777777777776 1334
Q ss_pred ccCCCCCCCEEEccCCC---CCC---CCCCCccccCccCcEEEccCCccc
Q psy5270 66 GFGAFPVLEVLDLTYNN---LNE---QSLPGNFFMLETLRALYLGDNDFE 109 (352)
Q Consensus 66 ~~~~l~~L~~L~Ls~N~---l~g---~~~p~~~~~l~~L~~L~l~~N~l~ 109 (352)
.+..=+.|+.|+|++|. +.. ..+-..+..-++|+.|+++.|...
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 44445567777777543 221 001122333456777777665543
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.16 E-value=0.0012 Score=60.99 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=47.4
Q ss_pred CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270 2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT 79 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls 79 (352)
+.++.+.+..+.. .++ ..|.++..++......+.+. ...+..+.+|+.+.+..+ ++.|++ .|.++++|+.+++.
T Consensus 253 ~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 253 TDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp SSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ccceeEEcCCCcc-eeeccccccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 4566666655432 222 23444555555544433211 113344444444444332 334432 24444445544443
Q ss_pred CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHH
Q psy5270 80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQ 122 (352)
Q Consensus 80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~ 122 (352)
.+ ++. .-...|.++++|+.+++..| ++.|+. +|.++.+|+
T Consensus 329 ~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 329 YL-VEE-IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred Cc-ccE-EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 22 321 11224444444555444433 333332 344444443
No 173
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.11 E-value=0.00077 Score=62.34 Aligned_cols=117 Identities=15% Similarity=0.260 Sum_probs=84.4
Q ss_pred CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270 2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL 78 (352)
Q Consensus 2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L 78 (352)
+.|+.+++..+. ..|.. .|.++++|+.+.+. +.++.|+. .|.++++|+.+++..+ ++.|.. .|.++++|+.+.+
T Consensus 265 ~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 567777776543 35554 47889999999996 55777765 7889999999999864 777865 5899999999999
Q ss_pred cCCCCCCCCCC-CccccCccCcEEEccCCccccchhhccCcccHHHHHH
Q psy5270 79 TYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILE 126 (352)
Q Consensus 79 s~N~l~g~~~p-~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l 126 (352)
..+ ++. |+ ..|.++++|+.+++.++... + .++....+|+.+.+
T Consensus 342 p~s-v~~--I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 342 PSS-VTK--IPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPV 385 (394)
T ss_dssp CTT-CCB--CCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC-----
T ss_pred Ccc-cCE--EhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEe
Confidence 755 553 44 57999999999999987643 1 34555666665543
No 174
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.04 E-value=0.0026 Score=58.32 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=75.7
Q ss_pred ccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCCCCCCCCCccccCc
Q psy5270 19 PGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE 96 (352)
Q Consensus 19 ~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~ 96 (352)
..+..+.+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ ++.|.. .|.++.+|+.+.+..+ ++. .-...|.+++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~-i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT-VPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE-ECTTTTTTCT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-cee-cccccccccc
Confidence 34667788888888655 44453 46788889999998765 667754 4778889999988654 432 1234678889
Q ss_pred cCcEEEccCCccccchh-hccCcccHHHHHH
Q psy5270 97 TLRALYLGDNDFEVLPA-EIGNLKNLQIILE 126 (352)
Q Consensus 97 ~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l 126 (352)
+|+.+.+.++.++.|+. +|.++.+|+.+.+
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEc
Confidence 99999999888887765 7888887765543
No 175
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.20 E-value=0.0016 Score=53.86 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=60.5
Q ss_pred ccCCCCCCEEEccCC-cCc-----ccccccCCCCCCcEEEccCCCCC-----ccccccCCCCCCCEEEccCCCCCCC---
Q psy5270 21 LANLVNLEILTLFNN-QIE-----TLPTSLSSLPKLRILNLGMNRLS-----SLPRGFGAFPVLEVLDLTYNNLNEQ--- 86 (352)
Q Consensus 21 l~~l~~L~~L~L~~N-~l~-----~ip~~l~~L~~L~~L~L~~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~g~--- 86 (352)
+.+-+.|++|+|++| ++. .+-+.+..-+.|+.|+|++|+++ .|-+.+..=+.|+.|+|+.|.|+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999985 776 23456677788999999999997 2334444557899999999998641
Q ss_pred CCCCccccCccCcEEEccCCc
Q psy5270 87 SLPGNFFMLETLRALYLGDND 107 (352)
Q Consensus 87 ~~p~~~~~l~~L~~L~l~~N~ 107 (352)
.+-+.+..-+.|++|+|++|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 111223334569999998653
No 176
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=95.82 E-value=0.0053 Score=53.06 Aligned_cols=79 Identities=28% Similarity=0.427 Sum_probs=67.1
Q ss_pred CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196 (352)
Q Consensus 117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~ 196 (352)
|+.....+.....|.|..+..|.|++++|..+..+.+....|+.+|.++.++.+.++.++..+ +++++.+.|+++.
T Consensus 116 Nl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~~~Y~asKaal~~ltr~lA~ela~~----gIrVN~V~PG~i~ 191 (254)
T 4fn4_A 116 NLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQ----GIRAVAVLPGTVK 191 (254)
T ss_dssp HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred HhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCChHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEEeCCCC
Confidence 444555555666899999889999999999999999999999999999999999999888654 7999999999887
Q ss_pred cCC
Q psy5270 197 TGL 199 (352)
Q Consensus 197 ~~~ 199 (352)
++.
T Consensus 192 T~~ 194 (254)
T 4fn4_A 192 TNI 194 (254)
T ss_dssp SSC
T ss_pred Ccc
Confidence 764
No 177
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=95.11 E-value=0.013 Score=50.38 Aligned_cols=80 Identities=30% Similarity=0.440 Sum_probs=65.9
Q ss_pred CcccHHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270 117 NLKNLQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV 195 (352)
Q Consensus 117 nl~~L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~ 195 (352)
|+.....+.....|.|..+. .|.|++++|..+..+.+....|+.+|.++.++.+.++.++..+ +++++.+.|+++
T Consensus 110 Nl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~~~Y~asKaav~~ltr~lA~Ela~~----gIrVNaV~PG~i 185 (247)
T 4hp8_A 110 NLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRVPSYTAAKHGVAGLTKLLANEWAAK----GINVNAIAPGYI 185 (247)
T ss_dssp HTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSB
T ss_pred HhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCChHHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEeeCCC
Confidence 44444455555678888764 6999999999999999999999999999999999999888654 799999999998
Q ss_pred ccCCc
Q psy5270 196 DTGLC 200 (352)
Q Consensus 196 ~~~~l 200 (352)
.++..
T Consensus 186 ~T~~~ 190 (247)
T 4hp8_A 186 ETNNT 190 (247)
T ss_dssp CSGGG
T ss_pred CCcch
Confidence 77643
No 178
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=94.07 E-value=0.028 Score=48.48 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=64.9
Q ss_pred CcccHHHHHHhcchhhHhh-cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270 117 NLKNLQIILETFLPDMMEK-NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV 195 (352)
Q Consensus 117 nl~~L~~L~l~~~p~~~~~-~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~ 195 (352)
|+.....+.....|.|..+ ..|.|++++|..+..+.|....|+.+|.++.++.+.++.++..+ +++++.+.|+++
T Consensus 117 Nl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~ela~~----gIrVN~V~PG~i 192 (255)
T 4g81_D 117 NLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQF----NIQTNAIGPGYI 192 (255)
T ss_dssp HTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSB
T ss_pred HhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCchhHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeeCCC
Confidence 3444455555667888765 46899999999999999999999999999999999999888654 799999999988
Q ss_pred ccCC
Q psy5270 196 DTGL 199 (352)
Q Consensus 196 ~~~~ 199 (352)
.++.
T Consensus 193 ~T~~ 196 (255)
T 4g81_D 193 LTDM 196 (255)
T ss_dssp CCGG
T ss_pred CCch
Confidence 7754
No 179
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=93.83 E-value=0.037 Score=47.32 Aligned_cols=78 Identities=29% Similarity=0.347 Sum_probs=60.7
Q ss_pred cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....+.....|.|. +..|.|++++|..+..+.+....|+.+|.++.++.+.++.++..+ +++++.+.|+++.+
T Consensus 108 l~g~~~~~~~~~p~m~-~~~G~IVnisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~Ela~~----gIrVNaV~PG~i~T 182 (242)
T 4b79_A 108 LSAAMLASQLARPLLA-QRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAE----RIRVNAIAPGWIDT 182 (242)
T ss_dssp THHHHHHHHHHHHHHH-HHCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCC
T ss_pred hHHHHHHHHHHHHHHH-HcCCeEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEeCCCCC
Confidence 3333333334456554 456999999999999999999999999999999999999888654 79999999999887
Q ss_pred CCc
Q psy5270 198 GLC 200 (352)
Q Consensus 198 ~~l 200 (352)
+..
T Consensus 183 ~m~ 185 (242)
T 4b79_A 183 PLG 185 (242)
T ss_dssp C--
T ss_pred hhh
Confidence 653
No 180
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=93.45 E-value=0.039 Score=47.75 Aligned_cols=78 Identities=33% Similarity=0.427 Sum_probs=62.8
Q ss_pred cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....+.....|.|. ...|.|++++|..+..+.|....|+.+|.++.++.+.++.++..+ +++++.+.|+++.+
T Consensus 114 l~g~~~~~~~~~p~m~-~~~G~IVnisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~ela~~----gIrVN~V~PG~i~T 188 (258)
T 4gkb_A 114 LIHYYAMAHYCVPHLK-ATRGAIVNISSKTAVTGQGNTSGYCASKGAQLALTREWAVALREH----GVRVNAVIPAEVMT 188 (258)
T ss_dssp THHHHHHHHHHHHHHH-HHTCEEEEECCTHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCC
T ss_pred hHHHHHHHHHHHHHHH-hcCCeEEEEeehhhccCCCCchHHHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCCCCC
Confidence 3344444445567664 446999999999999999999999999999999999999888654 78999999999887
Q ss_pred CCc
Q psy5270 198 GLC 200 (352)
Q Consensus 198 ~~l 200 (352)
+..
T Consensus 189 ~~~ 191 (258)
T 4gkb_A 189 PLY 191 (258)
T ss_dssp SCC
T ss_pred hhH
Confidence 654
No 181
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=93.09 E-value=0.051 Score=47.08 Aligned_cols=79 Identities=23% Similarity=0.408 Sum_probs=63.7
Q ss_pred CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCC-ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPN-LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV 195 (352)
Q Consensus 117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~-l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~ 195 (352)
|+.....+.....|.|..+..|.|+.++|..+..+.|. ...|+.+|.++.++.+.++.++..+ +++++.+.|+++
T Consensus 111 Nl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~~~~Y~asKaal~~lt~~lA~Ela~~----gIrVN~V~PG~i 186 (261)
T 4h15_A 111 NLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPESTTAYAAAKAALSTYSKAMSKEVSPK----GVRVVRVSPGWI 186 (261)
T ss_dssp HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCB
T ss_pred HhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCccHHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEeCCCc
Confidence 34444555556688998888999999999988887774 5778999999999999998887653 799999999988
Q ss_pred ccCC
Q psy5270 196 DTGL 199 (352)
Q Consensus 196 ~~~~ 199 (352)
.++.
T Consensus 187 ~T~~ 190 (261)
T 4h15_A 187 ETEA 190 (261)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 7653
No 182
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=92.09 E-value=0.11 Score=44.57 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=60.2
Q ss_pred cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....+.....|.|.+ ..|.|++++|..+..+.|....|+.+|.++.++.+.++.++.. +++++.+.|+++.+
T Consensus 107 l~g~~~~~~~~~~~m~~-~~G~IInisS~~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~-----~IrVN~I~PG~i~t 180 (247)
T 3ged_A 107 LKAPYELSRLCRDELIK-NKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-----DVLVNCIAPGWINV 180 (247)
T ss_dssp THHHHHHHHHHHHHHHH-TTCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTT-----TSEEEEEEECSBCC
T ss_pred hHHHHHHHHHHHHHHhh-cCCcEEEEeecccccCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CCEEEEEecCcCCC
Confidence 34444444445666654 4599999999999999999999999999999999999888742 68999999998876
Q ss_pred CC
Q psy5270 198 GL 199 (352)
Q Consensus 198 ~~ 199 (352)
+.
T Consensus 181 ~~ 182 (247)
T 3ged_A 181 TE 182 (247)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 183
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=89.55 E-value=0.1 Score=45.44 Aligned_cols=78 Identities=26% Similarity=0.350 Sum_probs=60.2
Q ss_pred CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196 (352)
Q Consensus 117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~ 196 (352)
|+.....+.....|.|. ..|.|+.++|..+..+.|....|+.+|.++.++.+.++.++.. .+++++.+.|+++.
T Consensus 134 Nl~g~~~~~~~~~p~m~--~~G~IInisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~Ela~----~gIrVN~V~PG~i~ 207 (273)
T 4fgs_A 134 NVKGVLFTVQKALPLLA--RGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKD----RGIRINTLSPGPTE 207 (273)
T ss_dssp HTHHHHHHHHHHTTTEE--EEEEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHTTT----SCEEEEEEEECSBC
T ss_pred HhHHHHHHHHHHHHHHh--hCCeEEEEeehhhccCCCCchHHHHHHHHHHHHHHHHHHHhcc----cCeEEEEEeeCCCC
Confidence 34444444455577664 3588999999999999999999999999999999999887754 37899999999887
Q ss_pred cCCc
Q psy5270 197 TGLC 200 (352)
Q Consensus 197 ~~~l 200 (352)
++..
T Consensus 208 T~~~ 211 (273)
T 4fgs_A 208 TTGL 211 (273)
T ss_dssp C---
T ss_pred ChhH
Confidence 7654
No 184
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=86.38 E-value=0.36 Score=41.36 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=53.1
Q ss_pred cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270 136 NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC 200 (352)
Q Consensus 136 ~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l 200 (352)
..|.|+.++|..+..+.|....|+.+|.++.++.+.++.++..+ +++++.+.|+++.+...
T Consensus 138 ~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~Ela~~----gIrVN~V~PG~i~T~~~ 198 (256)
T 4fs3_A 138 EGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPD----NIRVNAISAGPIRTLSA 198 (256)
T ss_dssp TCEEEEEEECGGGTSCCTTTHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCCCSGGG
T ss_pred cCCEEEEEeccccccCcccchhhHHHHHHHHHHHHHHHHHhCcc----CeEEEEEecCCCCChhh
Confidence 46899999999999999999999999999999999998887653 79999999998877543
No 185
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=85.03 E-value=0.69 Score=39.80 Aligned_cols=74 Identities=35% Similarity=0.560 Sum_probs=58.8
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.+.....|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+++.++.
T Consensus 123 ~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~vn~v~PG~v~T~~ 196 (266)
T 3p19_A 123 LNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAA----SNVRVMTIAPSAVKTEL 196 (266)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBSSSG
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCCCchHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEeeCccccch
Confidence 333444567777777899999999999988888889999999999998888777643 47889999998876654
No 186
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=83.94 E-value=0.79 Score=39.75 Aligned_cols=79 Identities=30% Similarity=0.440 Sum_probs=60.7
Q ss_pred cccHHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270 118 LKNLQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196 (352)
Q Consensus 118 l~~L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~ 196 (352)
+.....+.....|.|..+. .|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+++.
T Consensus 137 ~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gI~vn~v~PG~v~ 212 (286)
T 3uve_A 137 LAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQ----HMIRVNSVHPTHVK 212 (286)
T ss_dssp THHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBS
T ss_pred hHHHHHHHHHHHHHHHhCCCCcEEEEECchhhccCCCCccHHHHHHHHHHHHHHHHHHHhcc----cCeEEEEEecCccc
Confidence 3333444444567776654 689999999999988898889999999999999888877643 37899999999887
Q ss_pred cCCc
Q psy5270 197 TGLC 200 (352)
Q Consensus 197 ~~~l 200 (352)
++..
T Consensus 213 T~~~ 216 (286)
T 3uve_A 213 TPML 216 (286)
T ss_dssp STTT
T ss_pred CCcc
Confidence 7543
No 187
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}
Probab=83.69 E-value=1 Score=38.02 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=57.3
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.|..+..+.|+.++|..+..+.+....|+.+|..+.++.+.+..++.. .+++++.+.|+++.+..
T Consensus 111 ~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~ 184 (244)
T 1zmo_A 111 ILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSR----DGILLYAIGPNFFNNPT 184 (244)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTCTTHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBCBTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECChhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhh----cCcEEEEEeeCCCcCCc
Confidence 333344466676666789999999988888888889999999999988888776643 36889999998876654
No 188
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=83.54 E-value=0.55 Score=40.96 Aligned_cols=77 Identities=40% Similarity=0.563 Sum_probs=60.2
Q ss_pred cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.+..++. -.+++++.+.|+++.+
T Consensus 148 ~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~----~~gIrvn~v~PG~v~T 223 (287)
T 3rku_A 148 VTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELI----NTKIRVILIAPGLVET 223 (287)
T ss_dssp THHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTT----TSSCEEEEEEESCEES
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCCCchHHHHHHHHHHHHHHHHHHhh----hcCCEEEEEeCCcCcC
Confidence 333344444556777777789999999999998888889999999999999888876653 3478999999988766
Q ss_pred C
Q psy5270 198 G 198 (352)
Q Consensus 198 ~ 198 (352)
+
T Consensus 224 ~ 224 (287)
T 3rku_A 224 E 224 (287)
T ss_dssp S
T ss_pred c
Confidence 4
No 189
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=83.52 E-value=0.6 Score=39.67 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=61.1
Q ss_pred cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+.+++.+.|+.+.+
T Consensus 115 ~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~----~gi~vn~v~PG~v~T 190 (248)
T 3op4_A 115 LTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVAS----RGVTVNTVAPGFIET 190 (248)
T ss_dssp THHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBSS
T ss_pred hHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHH----hCeEEEEEeeCCCCC
Confidence 3333444445567777777899999999888888888889999999999999888877643 378899999998876
Q ss_pred CC
Q psy5270 198 GL 199 (352)
Q Consensus 198 ~~ 199 (352)
+.
T Consensus 191 ~~ 192 (248)
T 3op4_A 191 DM 192 (248)
T ss_dssp TT
T ss_pred ch
Confidence 54
No 190
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=83.19 E-value=0.68 Score=39.45 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=54.0
Q ss_pred HHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCcee-ecccCcccccCC
Q psy5270 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF-TSIFPFMVDTGL 199 (352)
Q Consensus 121 L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~-~g~~P~~~~~~~ 199 (352)
...+.....|.+..+..|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .++++ +.+.|+.+.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~v~n~v~PG~v~T~~ 193 (252)
T 3h7a_A 118 GFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMP----KNIHVAHLIIDSGVDTAW 193 (252)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEEC-------
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCCCccHHHHHHHHHHHHHHHHHHhhh----cCCEEEEEecCCccCChh
Confidence 3334444567777777789999999999888888899999999999998888777643 36888 788998887654
Q ss_pred c
Q psy5270 200 C 200 (352)
Q Consensus 200 l 200 (352)
.
T Consensus 194 ~ 194 (252)
T 3h7a_A 194 V 194 (252)
T ss_dssp -
T ss_pred h
Confidence 3
No 191
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=82.77 E-value=0.74 Score=39.28 Aligned_cols=77 Identities=30% Similarity=0.323 Sum_probs=59.7
Q ss_pred cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....+.....|.|..+..+.|+.++|..+..+.+....|..+|.++.++.+.+..++.. .+++++.+.|+.+.+
T Consensus 120 ~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~T 195 (256)
T 3gaf_A 120 LFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGP----MGIRVNAIAPGAIKT 195 (256)
T ss_dssp THHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHhh----hCcEEEEEEEccccC
Confidence 3333444444567777777889999999999888888889999999999998888777643 368889999987765
Q ss_pred C
Q psy5270 198 G 198 (352)
Q Consensus 198 ~ 198 (352)
+
T Consensus 196 ~ 196 (256)
T 3gaf_A 196 D 196 (256)
T ss_dssp H
T ss_pred c
Confidence 4
No 192
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=82.66 E-value=0.83 Score=39.44 Aligned_cols=74 Identities=34% Similarity=0.410 Sum_probs=58.7
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+.+.++.
T Consensus 142 ~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~ 215 (273)
T 3uf0_A 142 WVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAG----RGVGVNALAPGYVVTAN 215 (273)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSGG
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh----cCcEEEEEEeCCCcCCc
Confidence 333444467777777899999999999988888889999999999998888877643 37889999998876543
No 193
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=82.35 E-value=0.79 Score=39.65 Aligned_cols=78 Identities=28% Similarity=0.384 Sum_probs=60.5
Q ss_pred cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....+.....|.|..+..+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.+
T Consensus 131 ~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~vn~v~PG~v~t 206 (281)
T 3s55_A 131 LTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVG----YGITVNAVAPGNIET 206 (281)
T ss_dssp THHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHTGG----GTEEEEEEEECSBCS
T ss_pred hHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCCCCCchhHHHHHHHHHHHHHHHHHHhh----cCcEEEEEecCcccC
Confidence 3333344444567777777899999999999888888889999999999998888776643 378899999998876
Q ss_pred CC
Q psy5270 198 GL 199 (352)
Q Consensus 198 ~~ 199 (352)
+.
T Consensus 207 ~~ 208 (281)
T 3s55_A 207 PM 208 (281)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 194
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=82.20 E-value=0.85 Score=39.27 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=58.9
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 123 ~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~t~~ 196 (271)
T 3tzq_B 123 MLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGR----HGVRCNAIAPGLVRTPR 196 (271)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSSCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCCTT
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhh----cCEEEEEEEeCCCcCcc
Confidence 334444567777777899999999988888888889999999999998888777643 36889999998887654
No 195
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=81.44 E-value=0.98 Score=38.96 Aligned_cols=75 Identities=36% Similarity=0.440 Sum_probs=58.5
Q ss_pred HHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 121 LQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 121 L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...+.....|.+..+. .+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 136 ~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~T~~ 211 (277)
T 3tsc_A 136 TWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGK----HSIRVNSVHPGPVNTPM 211 (277)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBSSGG
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEccHhhCCCCCCchhhHHHHHHHHHHHHHHHHHhCc----cCeEEEEEEeCCCcCCc
Confidence 3334444567776654 689999999999888888889999999999998888877643 36889999998887654
No 196
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=81.37 E-value=0.61 Score=40.02 Aligned_cols=71 Identities=23% Similarity=0.409 Sum_probs=57.2
Q ss_pred HHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....|.+..+..+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 125 ~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~t~ 195 (265)
T 3lf2_A 125 PVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAP----KGVRVNGILIGLVESG 195 (265)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEEGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCH
T ss_pred HHHHHHHHhhccCCeEEEEECCcccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc----cCeEEEEEEeCcCcCc
Confidence 3334466676666789999999999888898899999999999999888877653 3789999999887664
No 197
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=81.17 E-value=0.91 Score=39.03 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=59.6
Q ss_pred cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.+
T Consensus 126 ~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T 201 (266)
T 3uxy_A 126 VEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAP----QGIRINAVCPNEVNT 201 (266)
T ss_dssp THHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEeeCCCcc
Confidence 3333344444567777777899999999999888888889999999999998888777643 378889999987765
Q ss_pred C
Q psy5270 198 G 198 (352)
Q Consensus 198 ~ 198 (352)
+
T Consensus 202 ~ 202 (266)
T 3uxy_A 202 P 202 (266)
T ss_dssp H
T ss_pred h
Confidence 4
No 198
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=80.94 E-value=1 Score=38.97 Aligned_cols=75 Identities=33% Similarity=0.429 Sum_probs=58.3
Q ss_pred HHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 121 L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...+.....|.+.....|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 139 ~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~t~~ 213 (281)
T 3v2h_A 139 SFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAE----SGVTVNSICPGYVLTPL 213 (281)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCC--
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccccCCCCchHHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEECCCCcCcc
Confidence 3334444567777777899999999999888888889999999999998888777643 36889999999887654
No 199
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=80.91 E-value=1.1 Score=39.13 Aligned_cols=74 Identities=34% Similarity=0.476 Sum_probs=58.0
Q ss_pred HHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270 123 IILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC 200 (352)
Q Consensus 123 ~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l 200 (352)
.+.....|.+.... .+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+++.++..
T Consensus 155 ~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~~ 229 (299)
T 3t7c_A 155 ITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGP----RNIRVNIVCPSSVATPML 229 (299)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESCBSSTTT
T ss_pred HHHHHHHHHHHhcCCCcEEEEECChhhccCCCCcchHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEecCCccCccc
Confidence 33334456665544 689999999999988898899999999999999888877653 378999999998877543
No 200
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=80.55 E-value=1.3 Score=38.32 Aligned_cols=75 Identities=37% Similarity=0.487 Sum_probs=58.5
Q ss_pred HHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 121 LQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 121 L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...+.....|.|.... .+.|+.++|..+..+.+....|..+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~t~~ 215 (280)
T 3pgx_A 140 TWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGE----YGIRVNSIHPYSVETPM 215 (280)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSTT
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEcchhhccCCCCchhHHHHHHHHHHHHHHHHHHhhh----cCeEEEEEeeCcccCcc
Confidence 3334444567776654 688999999999988898899999999999998888777643 37899999999887654
No 201
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=80.48 E-value=0.76 Score=39.30 Aligned_cols=75 Identities=31% Similarity=0.275 Sum_probs=58.3
Q ss_pred HHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 121 L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 117 ~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~~ 191 (258)
T 3oid_A 117 LLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSP----KQIIVNAVSGGAIDTDA 191 (258)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHTGG----GTEEEEEEEECCBCSGG
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECchhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHhh----cCcEEEEEeeCCCcChh
Confidence 3334444567777777789999999998888888889999999999998888776643 36888999998876643
No 202
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=80.31 E-value=1 Score=38.79 Aligned_cols=74 Identities=24% Similarity=0.301 Sum_probs=58.2
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.+..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+.+.++.
T Consensus 139 ~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~ 212 (271)
T 4ibo_A 139 FMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVAKGGIKMLTRAMAAEWAQ----YGIQANAIGPGYMLTDM 212 (271)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSGG
T ss_pred HHHHHHHHHHHHhcCCcEEEEEccHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHhh----hCeEEEEEEeccEeCcc
Confidence 333444467777777789999999988888888889999999999998888877643 37888999998876643
No 203
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=80.22 E-value=0.88 Score=39.17 Aligned_cols=74 Identities=27% Similarity=0.425 Sum_probs=58.6
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.+..+..+.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+.+.++.
T Consensus 142 ~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~~ 215 (269)
T 4dmm_A 142 FLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELAS----RGITVNAVAPGFIATDM 215 (269)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECCBTTSC
T ss_pred HHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh----hCcEEEEEEECCCcCcc
Confidence 333444467777777899999999988888888889999999999998888877643 36889999999887654
No 204
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=79.72 E-value=0.97 Score=39.11 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=56.9
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.....|.+.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 138 ~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~ 209 (277)
T 4dqx_A 138 LCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAK----EGIRVNAVAPGTIDSP 209 (277)
T ss_dssp HHHHHHHHHHTTTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCH
T ss_pred HHHHHHHHHHHHcCCcEEEEECchhhCcCCCCChhHHHHHHHHHHHHHHHHHHhhh----cCeEEEEEeeCcCcCc
Confidence 33344466676666789999999999888888899999999999998888777643 3688889999877654
No 205
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...
Probab=79.61 E-value=1.3 Score=39.29 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=57.5
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCcc-ccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV-PYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC 200 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~-~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l 200 (352)
..+.....|.|..+ |.|+.++|..+..+.+... .|+.+|.++.++.+.+..++... .+++++.+.|+++.++..
T Consensus 151 ~~l~~~~~p~m~~~--g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la~el~~~---~gI~vn~v~PG~v~T~~~ 225 (329)
T 3lt0_A 151 ISLCKYFVNIMKPQ--SSIISLTYHASQKVVPGYGGGMSSAKAALESDTRVLAYHLGRN---YNIRINTISAGPLKSRAA 225 (329)
T ss_dssp HHHHHHHGGGEEEE--EEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHH---HCCEEEEEEECCCCCHHH
T ss_pred HHHHHHHHHHHhhC--CeEEEEeCccccCCCCcchHHHHHHHHHHHHHHHHHHHHhCCc---cCeEEEEEecceeechhH
Confidence 33344446666544 8999999999988888885 99999999999999998887641 278999999998876543
No 206
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=79.26 E-value=1 Score=38.11 Aligned_cols=76 Identities=28% Similarity=0.457 Sum_probs=59.4
Q ss_pred cHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 120 ~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
....+.....|.|.....+.++.++|..+..+.+....|..+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 116 g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~vn~v~PG~v~t~~ 191 (246)
T 3osu_A 116 GVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELAS----RGITVNAVAPGFIVSDM 191 (246)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBGGGC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHHHHHHHHHHHHHHhcc----cCeEEEEEEECCCcCCc
Confidence 33334444567777777899999999888888888889999999999998888777643 37888999998876654
No 207
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=78.87 E-value=1.2 Score=38.69 Aligned_cols=75 Identities=27% Similarity=0.418 Sum_probs=57.2
Q ss_pred HHHHHhcchhhHhhcCceEeecccccccc--CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIV--GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~--~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.|..+..+.|+.++|..+.. +.+....|+.+|.++.++.+.++.++.. .+++++.+.|+.+.++.
T Consensus 142 ~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~ 217 (283)
T 3v8b_A 142 FLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGK----HHIRVNAVCPGAIETNI 217 (283)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCSTTCHHHHHHHHHHHHHHHHHHHHTTT----TTEEEEEEEECSBSSCT
T ss_pred HHHHHHHHHHHHHcCCceEEEEcChhhccCCCCCCchHHHHHHHHHHHHHHHHHHHhCc----cCcEEEEEEeCCCcCCc
Confidence 33344446777777788999999988876 5677788999999999998888776543 36899999999887764
Q ss_pred c
Q psy5270 200 C 200 (352)
Q Consensus 200 l 200 (352)
.
T Consensus 218 ~ 218 (283)
T 3v8b_A 218 S 218 (283)
T ss_dssp T
T ss_pred c
Confidence 3
No 208
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=78.62 E-value=1.1 Score=38.76 Aligned_cols=70 Identities=36% Similarity=0.471 Sum_probs=56.6
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.....|.+.....|.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+.+.++
T Consensus 142 ~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~t~ 211 (277)
T 3gvc_A 142 TKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRS----SGIRSNTLLPAFVDTP 211 (277)
T ss_dssp HHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCH
T ss_pred HHHHHHHHHhcCCcEEEEEcchhhccCCCCchhHHHHHHHHHHHHHHHHHHhcc----cCeEEEEEeeCCccCc
Confidence 334467777777899999999999888888889999999999998888777643 3788899999877654
No 209
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=78.58 E-value=1.6 Score=37.73 Aligned_cols=75 Identities=29% Similarity=0.406 Sum_probs=57.7
Q ss_pred HHHHHHhcchhhHhhcCceEeeccccccc-cCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 121 LQIILETFLPDMMEKNRGHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 121 L~~L~l~~~p~~~~~~~g~i~~iss~~~l-~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...+.....|.+.....|.|+.++|..+. .+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 121 ~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gIrvn~v~PG~v~T~~ 196 (280)
T 3tox_A 121 AFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGA----RGIRVNALLPGGTDTPA 196 (280)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCTTCHHHHHHHHHHHHHHHHHHHHHHT----TTEEEEEEEECSBSSTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCCCchhHHHHHHHHHHHHHHHHHHhhh----cCeEEEEEEECCCCCch
Confidence 33344445677777777899999988877 67788888999999999999888877653 37889999998876653
No 210
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=78.21 E-value=1.6 Score=36.87 Aligned_cols=72 Identities=33% Similarity=0.511 Sum_probs=55.0
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.....|.+.... +.++.++|..+..+.+....|+.+|.++.++.+.+..++.. .+.+++.+.|+++.++.
T Consensus 121 ~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~ 192 (247)
T 2jah_A 121 YMTRAALPHLLRSK-GTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTE----RGVRVVVIEPGTTDTEL 192 (247)
T ss_dssp HHHHHHHHHHHHHT-CEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBSSSG
T ss_pred HHHHHHHHHHHHCC-CEEEEEccHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEECCCCCCcc
Confidence 33334456666555 89999999888888888888999999999988888766643 47888999998876643
No 211
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=78.17 E-value=0.82 Score=39.41 Aligned_cols=76 Identities=34% Similarity=0.497 Sum_probs=59.2
Q ss_pred ccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 119 ~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.....+.....|.+.....|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+++.++
T Consensus 138 ~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~ 213 (270)
T 3ftp_A 138 KAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGS----RGITVNCVAPGFIDTD 213 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCchhHHHHHHHHHHHHHHHHHHHhh----hCeEEEEEEeCCCcCc
Confidence 333334444567777777899999999988888888899999999999998888777643 3688889999877654
No 212
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=78.01 E-value=1.3 Score=38.24 Aligned_cols=73 Identities=25% Similarity=0.425 Sum_probs=56.2
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..+.....|.|..+..+.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+.+.++
T Consensus 145 ~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~ 217 (275)
T 4imr_A 145 VDMLQSALPKMVARKWGRVVSIGSINQLRPKSVVTAYAATKAAQHNLIQSQARDFAG----DNVLLNTLAPGLVDTD 217 (275)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBCSH
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCchhhHHHHHHHHHHHHHHHHHhcc----cCcEEEEEEeccccCc
Confidence 334444567777777899999999888876666667999999999998888777643 3788899999887654
No 213
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=76.54 E-value=2 Score=37.57 Aligned_cols=71 Identities=37% Similarity=0.615 Sum_probs=55.6
Q ss_pred HHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....|.+.... .+.|+.++|..+..+.+....|+.+|.++.++...+..++.. .+.+++.+.|+.+.++
T Consensus 146 l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~ 217 (301)
T 3tjr_A 146 AVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKP----NGIGVSVLCPMVVETK 217 (301)
T ss_dssp HHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEECCSCCCSS
T ss_pred HHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCchHHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEECCccccc
Confidence 3334466666655 689999999999988898899999999999988888776643 3688889999877654
No 214
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=76.49 E-value=1.6 Score=37.71 Aligned_cols=71 Identities=25% Similarity=0.272 Sum_probs=55.0
Q ss_pred HHhcchhhHhhc--CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKN--RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~--~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.+.... .|.|+.++|..+..+.+....|+.+|.++.++.+.++.++. -.+++++.+.|+.+.++.
T Consensus 151 ~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~----~~gI~vn~v~PG~v~T~~ 223 (281)
T 4dry_A 151 TQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDGR----MHDIACGQIDIGNAATDM 223 (281)
T ss_dssp HHHHHHHHHHSSSCCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEEECBCC--
T ss_pred HHHHHHHHHhcCCCCcEEEEECCHHhCCCCCCChhHHHHHHHHHHHHHHHHHHhc----ccCeEEEEEEECcCcChh
Confidence 333456665554 58999999999988888889999999999999888877764 347889999999887654
No 215
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Probab=76.46 E-value=1.3 Score=37.53 Aligned_cols=74 Identities=32% Similarity=0.434 Sum_probs=54.9
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc-cCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD-TGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~-~~~ 199 (352)
..+.....|.|.....+.|+.++|..+..+.+....|+.+|..+.++...+..++. -.+++++.+.|+++. ++.
T Consensus 111 ~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~----~~gi~v~~v~PG~v~gT~~ 185 (248)
T 3asu_A 111 VYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLH----GTAVRVTDIEPGLVGGTEF 185 (248)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTT----TSCCEEEEEEECSBCC---
T ss_pred HHHHHHHHHHHHhcCCceEEEEccchhccCCCCCchHHHHHHHHHHHHHHHHHHhh----hcCcEEEEEeccccccCcc
Confidence 33344446677666678999999998888888888899999999988887766553 347889999998876 543
No 216
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=76.37 E-value=1.2 Score=37.60 Aligned_cols=73 Identities=27% Similarity=0.397 Sum_probs=57.4
Q ss_pred HHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 122 QIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..+.....|.|.... .+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 116 ~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~t~ 189 (247)
T 3rwb_A 116 FIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGK----YNITANAVTPGLIESD 189 (247)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECchhhccCCCCchhhHHHHHHHHHHHHHHHHHhhh----cCeEEEEEeeCcCcCc
Confidence 333444466676655 689999999988888898899999999999999888877643 3788999999887654
No 217
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=76.33 E-value=1.7 Score=37.11 Aligned_cols=76 Identities=29% Similarity=0.371 Sum_probs=57.7
Q ss_pred ccHHHHHHhcchhhHhhcCceEeeccccccc-cCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 119 ~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l-~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
.....+.....|.|..+..+.++.++|..+. .+.+....|+.+|..+.++.+.++.++.. .+++++.+.|+.+.+
T Consensus 121 ~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~----~gi~vn~v~PG~v~t 196 (262)
T 3pk0_A 121 NGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAP----HKITVNAIMPGNIMT 196 (262)
T ss_dssp HHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBCC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHh----hCcEEEEEEeCcCcC
Confidence 3333344445677777778999999988775 77788889999999999998888777643 378889999987765
Q ss_pred C
Q psy5270 198 G 198 (352)
Q Consensus 198 ~ 198 (352)
+
T Consensus 197 ~ 197 (262)
T 3pk0_A 197 E 197 (262)
T ss_dssp H
T ss_pred c
Confidence 4
No 218
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=76.28 E-value=1.3 Score=38.32 Aligned_cols=72 Identities=33% Similarity=0.388 Sum_probs=57.1
Q ss_pred HHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 124 L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
+.....|.+..+..|.|+.++|..+..+.+....|..+|.++.++.+.++.++.. .+++++.+.|+.+.++.
T Consensus 130 ~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~----~gi~vn~v~PG~v~t~~ 201 (281)
T 3svt_A 130 VLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGA----SWVRVNSIRPGLIRTDL 201 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCHHHHSCCTTCTHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSGG
T ss_pred HHHHHHHHHHhcCCcEEEEEeCHHHcCCCCCChhHHHHHHHHHHHHHHHHHHhhh----cCeEEEEEEeCcCcCcc
Confidence 3334466777777789999999988888888889999999999998888777643 36888999998776643
No 219
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=76.24 E-value=1.2 Score=38.23 Aligned_cols=73 Identities=30% Similarity=0.586 Sum_probs=51.4
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..+.....|.+.....+.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+.+.++
T Consensus 137 ~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gI~vn~v~PG~v~t~ 209 (266)
T 3grp_A 137 STLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIAS----RNITVNCIAPGFIKSA 209 (266)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSH
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCHHHcCCCCCchhHHHHHHHHHHHHHHHHHHhhh----hCcEEEEEeeCcCCCc
Confidence 333444467777777889999999888888888889999999999998888777643 3788899999877654
No 220
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=75.86 E-value=2.2 Score=36.52 Aligned_cols=75 Identities=32% Similarity=0.556 Sum_probs=55.9
Q ss_pred ccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 119 ~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.....+.....|.|.....|.|+.++|..+..+.+....|+.+|.++.++.+.+..++ .+++++.+.|+++.++
T Consensus 114 ~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e~------~gIrvn~v~PG~v~T~ 187 (264)
T 3tfo_A 114 KGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQES------TNIRVTCVNPGVVESE 187 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHC------SSEEEEEEEECCC---
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCCCChhHHHHHHHHHHHHHHHHHhC------CCCEEEEEecCCCcCc
Confidence 3333344445677777778999999999999888988899999999998888776542 3789999999988765
Q ss_pred C
Q psy5270 199 L 199 (352)
Q Consensus 199 ~ 199 (352)
.
T Consensus 188 ~ 188 (264)
T 3tfo_A 188 L 188 (264)
T ss_dssp -
T ss_pred c
Confidence 4
No 221
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=75.74 E-value=1.8 Score=37.23 Aligned_cols=73 Identities=29% Similarity=0.406 Sum_probs=54.8
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 136 ~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~~ 208 (273)
T 1ae1_A 136 HLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAK----DNIRVNSVAPGVILTPL 208 (273)
T ss_dssp HHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBC---
T ss_pred HHHHHHHHHHHhcCCcEEEEEcCHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHhh----cCcEEEEEEeCCCcCch
Confidence 33344456666666789999999988888888889999999999988888776643 36888999998776643
No 222
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=75.71 E-value=1.7 Score=37.74 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=55.4
Q ss_pred HHHhcchhhHhhc------CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 124 ILETFLPDMMEKN------RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 124 L~l~~~p~~~~~~------~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....|.|.... .+.|+.++|..+..+.+....|..+|..+.++...+..++.. .+++++.+.|+++.+
T Consensus 157 l~~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T 232 (291)
T 1e7w_A 157 LIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAP----LQIRVNGVGPGLSVL 232 (291)
T ss_dssp HHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBCC
T ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEechhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHh----cCeEEEEEeeCCccC
Confidence 3334456665544 589999999888888888889999999999998888776643 478999999988766
Q ss_pred CC
Q psy5270 198 GL 199 (352)
Q Consensus 198 ~~ 199 (352)
..
T Consensus 233 ~~ 234 (291)
T 1e7w_A 233 VD 234 (291)
T ss_dssp GG
T ss_pred Cc
Confidence 54
No 223
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=75.64 E-value=1.6 Score=36.88 Aligned_cols=77 Identities=23% Similarity=0.401 Sum_probs=58.6
Q ss_pred ccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 119 ~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.....+.....|.+.....+.++.++|..+..+.+....|+.+|.++..+.+.+..++.. .+.+++.+.|+.+.++
T Consensus 124 ~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~ 199 (256)
T 3ezl_A 124 TSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVAT----KGVTVNTVSPGYIGTD 199 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCSCCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCCCCcccHHHHHHHHHHHHHHHHHHHH----hCCEEEEEEECcccCc
Confidence 333334444467777777789999999998888888889999999999988888776643 3688888889877654
Q ss_pred C
Q psy5270 199 L 199 (352)
Q Consensus 199 ~ 199 (352)
.
T Consensus 200 ~ 200 (256)
T 3ezl_A 200 M 200 (256)
T ss_dssp H
T ss_pred c
Confidence 3
No 224
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=75.50 E-value=1.5 Score=37.15 Aligned_cols=72 Identities=33% Similarity=0.383 Sum_probs=50.0
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+.+++.+.|+++.++
T Consensus 123 ~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~ 194 (250)
T 3nyw_A 123 GILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAP----LGIRVTTLCPGWVNTD 194 (250)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECC-------CCTTHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBCSH
T ss_pred HHHHHHHHHHHhCCCeEEEEEccHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhh----cCcEEEEEecCcccCc
Confidence 33444466777777899999999888776666778999999999998888777643 3688999999887654
No 225
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=75.46 E-value=1.7 Score=37.19 Aligned_cols=71 Identities=28% Similarity=0.392 Sum_probs=55.6
Q ss_pred HHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....|.+.... .+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+++.++
T Consensus 136 l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~ 207 (266)
T 4egf_A 136 LASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGP----HGIRANSVCPTVVLTE 207 (266)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESCBCSH
T ss_pred HHHHHHHHHHhcCCCeEEEEEcchhhccCCCCChHHHHHHHHHHHHHHHHHHHHhh----hCeEEEEEEeCCCcCc
Confidence 3334456666554 579999999999888888889999999999998888877643 3688999999877654
No 226
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=75.37 E-value=1.2 Score=38.34 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=56.1
Q ss_pred HHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....|.+.....+.|+.++|..+..+.+....|..+|.++.++.+.+..++.. .+++++.+.|+++.++
T Consensus 143 l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~t~ 213 (277)
T 4fc7_A 143 VSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGP----QNIRVNSLAPGPISGT 213 (277)
T ss_dssp HHHHHHHHTHHHHCEEEEEECCSHHHHTCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBSSS
T ss_pred HHHHHHHHHHHcCCCEEEEECchhhCCCCCCcHHHHHHHHHHHHHHHHHHHHhhh----cCeEEEEEEECCEecc
Confidence 3334456666667889999999988888888889999999999998888777643 3688999999877653
No 227
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=75.36 E-value=0.99 Score=38.70 Aligned_cols=72 Identities=25% Similarity=0.353 Sum_probs=56.3
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.....|.|..+..+.|+.++|..+..+.+....|+.+|.++.++.+.+..++. -.+++++.+.|+.+.++
T Consensus 122 ~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~----~~gi~vn~v~PG~v~t~ 193 (267)
T 3t4x_A 122 RLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTT----GTNVTVNTIMPGSTLTE 193 (267)
T ss_dssp HHHHHHHHHHHHTTEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTT----TSEEEEEEEEECCBCCH
T ss_pred HHHHHHHHHHHhCCCCEEEEEcchhhccCCCcchHHHHHHHHHHHHHHHHHHHhC----CCCeEEEEEeCCeecCc
Confidence 3344446777766778999999999988888888999999999998888776553 34688889999877654
No 228
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}
Probab=75.32 E-value=2.7 Score=35.58 Aligned_cols=72 Identities=28% Similarity=0.328 Sum_probs=55.5
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC 200 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l 200 (352)
..+.....|.|.... +.|+.++|..+..+.+....|+.+|.++.++.+.+..++ .+++++.+.|+.+.++..
T Consensus 115 ~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~------~~i~vn~v~PG~v~t~~~ 186 (254)
T 3kzv_A 115 VSLVGIALPELKKTN-GNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANEE------RQVKAIAVAPGIVDTDMQ 186 (254)
T ss_dssp HHHHHHHHHHHHHHT-CEEEEECCSCCCCSSCCSHHHHHHHHHHHHHHHHHHHHC------TTSEEEEEECSSCCCCCS
T ss_pred HHHHHHHHHHHHhcC-CeEEEEcCchhccCCCCcchHHHHHHHHHHHHHHHHhhc------cCcEEEEEeCCcccchhH
Confidence 333344456665544 899999999888888888899999999999888877653 468999999998876543
No 229
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=75.00 E-value=1.8 Score=36.43 Aligned_cols=74 Identities=30% Similarity=0.482 Sum_probs=57.6
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.+.....+.++.++|..+..+.+....|+.+|.++..+.+.+..++. ..+.+++.+.|+++.+..
T Consensus 118 ~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~PG~v~t~~ 191 (247)
T 3lyl_A 118 FRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVA----SRNITVNVVAPGFIATDM 191 (247)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBCCTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCcHHHHHHHHHHHHHHHHHHHHHH----HcCeEEEEEeeCcEeccc
Confidence 33344446677777778999999988888888888999999999998888877664 336888899998876654
No 230
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=74.99 E-value=2 Score=36.44 Aligned_cols=74 Identities=31% Similarity=0.480 Sum_probs=57.5
Q ss_pred cHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 120 ~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
....+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .++++.+.|+++.++
T Consensus 127 g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~-----~irvn~v~PG~v~t~ 200 (252)
T 3f1l_A 127 ATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQ-----RLRVNCINPGGTRTA 200 (252)
T ss_dssp HHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTTT-----TCEEEEEECCSBSSH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECChhhccCCCCCchhHHHHHHHHHHHHHHHHHhcC-----CcEEEEEecCcccCc
Confidence 33334444567777777899999999999888888889999999999998888776632 278888999887654
No 231
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=74.51 E-value=2.1 Score=36.44 Aligned_cols=72 Identities=39% Similarity=0.638 Sum_probs=53.9
Q ss_pred HHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 124 L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
+.....|.+.....+.++.++|..+..+.+....|..+|.++.++...+..++. -.+.+++.+.|+.+.+..
T Consensus 145 l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~----~~gi~v~~v~PG~v~t~~ 216 (262)
T 3rkr_A 145 LLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELR----QHQVRVSLVAPGSVRTEF 216 (262)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTCEEEEEEECCC----
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCCCCCCchHHHHHHHHHHHHHHHHHHhh----hcCcEEEEEecCCCcCCc
Confidence 333445666666778999999999888888888999999999988888776654 347888889998876643
No 232
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=74.37 E-value=2 Score=36.28 Aligned_cols=71 Identities=27% Similarity=0.417 Sum_probs=53.0
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.+.....+.++.++|..+..+.+....|..+|..+.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 121 ~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~~ 191 (249)
T 2ew8_A 121 AKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGK----DGITVNAIAPSLVRTAT 191 (249)
T ss_dssp HHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCC----
T ss_pred HHHHHHHHHHcCCeEEEEEcchhhccCCCCchhHHHHHHHHHHHHHHHHHHHHh----cCcEEEEEecCcCcCcc
Confidence 334456666666789999999888888888888999999999988888776643 47889999998876654
No 233
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=74.25 E-value=2.2 Score=36.39 Aligned_cols=71 Identities=27% Similarity=0.397 Sum_probs=55.2
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.....|.+... .|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+++.++
T Consensus 126 ~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~t~ 196 (264)
T 3ucx_A 126 RLIQGFTPALEES-KGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGE----KGIRVNSVLPGYIWGG 196 (264)
T ss_dssp HHHHHTHHHHHHH-TCEEEEECCGGGGCCCTTCHHHHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEESSCBSH
T ss_pred HHHHHHHHHHHHc-CCEEEEECcchhccCCCccHHHHHHHHHHHHHHHHHHHHhCc----cCeEEEEEecCccccc
Confidence 3333445655544 489999999999888888889999999999999888877653 3688999999877654
No 234
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=74.15 E-value=3.6 Score=34.84 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=54.9
Q ss_pred HhcchhhHhh-cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHH-HHHhcCCceeecccCcccccC
Q psy5270 126 ETFLPDMMEK-NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR-EDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 126 l~~~p~~~~~-~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~-~~~~~~~n~~~g~~P~~~~~~ 198 (352)
....|.|... ..+.|+.++|..+..+.+....|+.+|.++.++.+.++.++. .. +++++.+.|+.+.++
T Consensus 123 ~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~~----gIrvn~v~PG~v~t~ 193 (257)
T 3imf_A 123 QAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKY----GIRVNAIAPGPIERT 193 (257)
T ss_dssp HHHHHHHHHHTCCCEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCBSSC
T ss_pred HHHHHHHHhhCCCcEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHHHHHhcccc----CeEEEEEEECCCcCC
Confidence 3345666443 468999999999888888888999999999999999888875 32 788999999887654
No 235
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=74.10 E-value=1.9 Score=37.11 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=54.3
Q ss_pred HHHhcchhhHhhc--CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 124 ILETFLPDMMEKN--RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 124 L~l~~~p~~~~~~--~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
+.....|.+.... .|.|+.++|..+..+.+....|+.+|.++.++.+.+..++. ..+++++.+.|+.+.++.
T Consensus 141 ~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~----~~gI~vn~v~PG~v~T~~ 214 (272)
T 4dyv_A 141 CTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGR----VHDIACGQIDIGNADTPM 214 (272)
T ss_dssp HHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEEEECC---
T ss_pred HHHHHHHHHHhCCCCCcEEEEECchhhcCCCCCchHHHHHHHHHHHHHHHHHHHhC----ccCEEEEEEEECcccChh
Confidence 3334456666554 58999999999988888888999999999999888877653 347888899998887654
No 236
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=74.08 E-value=1.7 Score=37.29 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=57.8
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC 200 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l 200 (352)
.+.....|.+.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+.+++.+.|+++.+...
T Consensus 140 ~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~~ 213 (269)
T 3gk3_A 140 NVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAK----RGITVNTVSPGYLATAMV 213 (269)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCTTT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChhhccCCCCcchHHHHHHHHHHHHHHHHHHhhh----cCCEEEEEecCcccchhh
Confidence 33344466676677789999999888888888889999999999988888766643 368889999998876543
No 237
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=74.06 E-value=2.7 Score=36.56 Aligned_cols=66 Identities=23% Similarity=0.173 Sum_probs=53.0
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..|.+.. .|.|+.++|..+..+.+....|..+|.++.++.+.++.++.. .+++++.+.|+++.+..
T Consensus 154 ~~~~m~~--~g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~----~gIrvn~v~PG~v~T~~ 219 (296)
T 3k31_A 154 AEPLMTN--GGSILTLSYYGAEKVVPHYNVMGVCKAALEASVKYLAVDLGK----QQIRVNAISAGPVRTLA 219 (296)
T ss_dssp HGGGCTT--CEEEEEEECGGGTSCCTTTTHHHHHHHHHHHHHHHHHHHHHT----TTEEEEEEEECCCCCSS
T ss_pred HHHHhhc--CCEEEEEEehhhccCCCCchhhHHHHHHHHHHHHHHHHHHhh----cCcEEEEEEECCCcCch
Confidence 3444433 689999999988888888889999999999999988877753 37899999999887653
No 238
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Probab=73.91 E-value=1.5 Score=42.64 Aligned_cols=66 Identities=30% Similarity=0.398 Sum_probs=55.0
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM 194 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~ 194 (352)
.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+.
T Consensus 434 ~~~~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~asKaal~~lt~~la~El~~----~gIrVn~v~PG~ 499 (604)
T 2et6_A 434 SRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAK----NNIKVNIVAPHA 499 (604)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHHSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEECChhhccCCCCChhHHHHHHHHHHHHHHHHHHhCc----cCeEEEEEcCCC
Confidence 334478887777899999999988888888889999999999999999887754 378999999973
No 239
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=73.44 E-value=2.5 Score=35.91 Aligned_cols=72 Identities=29% Similarity=0.415 Sum_probs=55.5
Q ss_pred HHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 124 ILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 124 L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
+.....|.+..+. .+.|+.++|..+..+.+....|..+|.++.++.+.+..++.. .+.+++.+.|+.+.++.
T Consensus 120 ~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~vn~v~PG~v~t~~ 192 (259)
T 4e6p_A 120 TLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIK----HRINVNAIAPGVVDGEH 192 (259)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCSTT
T ss_pred HHHHHHHHHHhcCCCeEEEEECChhhccCCCCChHHHHHHHHHHHHHHHHHHHhhh----cCCEEEEEEECCCccch
Confidence 3334456665554 689999999999888888889999999999998888776643 37888899998776543
No 240
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=73.37 E-value=2 Score=37.88 Aligned_cols=71 Identities=37% Similarity=0.567 Sum_probs=55.7
Q ss_pred HHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....|.+..+. .+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+++.++
T Consensus 173 l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~ 244 (317)
T 3oec_A 173 ACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEVGR----HNIRVNSVNPGAVNTE 244 (317)
T ss_dssp HHHHHHHHHHHTCSCEEEEEECCGGGSSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBSSH
T ss_pred HHHHHHHHHHHcCCCCEEEEECcHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhh----cCeEEEEEecCcccCc
Confidence 3334466666554 578999999999888888889999999999998888777643 3788999999887654
No 241
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=73.27 E-value=2.3 Score=36.09 Aligned_cols=71 Identities=35% Similarity=0.486 Sum_probs=54.0
Q ss_pred HHHhcchhhHhhcC-ceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p~~~~~~~-g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....|.|..... +.|+.++|..+..+.+....|..+|..+.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 119 ~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~vn~v~PG~v~t~ 190 (258)
T 3a28_C 119 GIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAP----KGHTVNAYAPGIVGTG 190 (258)
T ss_dssp HHHHHHHHHHHHTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECCBCSH
T ss_pred HHHHHHHHHHhcCCCcEEEEECcchhccCCCCchhHHHHHHHHHHHHHHHHHHHHh----hCeEEEEEECCccCCh
Confidence 33344566665555 89999999888888888888999999999988887776643 3688888889877554
No 242
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=73.24 E-value=2.1 Score=36.61 Aligned_cols=68 Identities=32% Similarity=0.381 Sum_probs=53.4
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|.+.....+.|+.++|..+..+.+....|+.+|..+.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 134 ~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~ 201 (267)
T 1iy8_A 134 KVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGR----YGIRINAIAPGAIWTP 201 (267)
T ss_dssp HHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBCSH
T ss_pred HHHHHHHHcCCCEEEEEcchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHh----cCeEEEEEEeCCCcCc
Confidence 4456666666789999999888877888888999999999988887776643 3688888999877554
No 243
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Probab=73.14 E-value=2 Score=38.07 Aligned_cols=74 Identities=38% Similarity=0.545 Sum_probs=56.2
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.|.....+.|+.++|..+..+.+....|+.+|..+..+...+..++. -.+++++.+.|+.+.+..
T Consensus 119 ~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~~~~Y~aSK~a~~~~~~~la~el~----~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 119 VRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLL----PFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCBCC--
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccccCCCCChHHHHHHHHHHHHHHHHHHHhh----hcCcEEEEEEeCcccChH
Confidence 33444446777666778999999988888888888899999999988888776654 347889999999887654
No 244
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=73.11 E-value=1.7 Score=37.58 Aligned_cols=71 Identities=32% Similarity=0.460 Sum_probs=55.3
Q ss_pred HHHhcch--hhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLP--DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p--~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....| .+.....|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 139 l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~ 211 (279)
T 3sju_A 139 VTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAK----TGITVNAVCPGYVETP 211 (279)
T ss_dssp HHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTGG----GTEEEEEEEESSBCSH
T ss_pred HHHHHhchhhHhhcCCcEEEEECChhhccCCCCChhHHHHHHHHHHHHHHHHHHHHh----hCcEEEEEeeCcccch
Confidence 3333455 456666789999999999888888889999999999998888776643 3688889999877654
No 245
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=72.79 E-value=2.2 Score=36.24 Aligned_cols=72 Identities=32% Similarity=0.378 Sum_probs=54.2
Q ss_pred HHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 124 L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
+.....|.|.....+.++.++|..+..+.+....|..+|..+.++.+.+..++. -.+.+++.+.|+++.++.
T Consensus 121 ~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 192 (260)
T 1x1t_A 121 GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETA----GQGITANAICPGWVRTPL 192 (260)
T ss_dssp HHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHT----TTTEEEEEEEECCBCC--
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHhCcCCCCCchHHHHHHHHHHHHHHHHHHhc----cCCEEEEEEeecCccCch
Confidence 333445666666678999999988887788888899999999988887776653 246888999998886654
No 246
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=72.72 E-value=2.4 Score=35.70 Aligned_cols=71 Identities=30% Similarity=0.537 Sum_probs=52.4
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.+.....+.++.++|..+..+.+....|..+|.++..+.+.+..++. ..+.+++.+.|+.+.+..
T Consensus 123 ~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~PG~v~t~~ 193 (249)
T 3f9i_A 123 NREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVA----TRGITVNAVAPGFIKSDM 193 (249)
T ss_dssp HHHHHHHHHHHTCEEEEEECCCCC--CCSCSHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCBC---
T ss_pred HHHHHHHHHhCCCcEEEEEccHHhccCCCCCchhHHHHHHHHHHHHHHHHHHH----HcCcEEEEEecCccccCc
Confidence 33445666667778999999998888888888999999999998888877664 336888888898776543
No 247
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=72.59 E-value=1.8 Score=36.82 Aligned_cols=72 Identities=35% Similarity=0.497 Sum_probs=55.0
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.....|.|..+..+.++.++|..+..+.+....|..+|..+.++.+.+..++.. .+++++.+.|+++.++
T Consensus 122 ~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 122 HVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAP----YNIRVNAISPGYMGPG 193 (262)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSS
T ss_pred HHHHHHHHHHHhcCCcEEEEEcchhhccCCCCCchHHHHHHHHHHHHHHHHHHHHh----hCeEEEEEecCCcCcc
Confidence 33334456666666789999999888877888888999999999888887766643 4788999999877654
No 248
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=72.56 E-value=2.5 Score=36.80 Aligned_cols=72 Identities=29% Similarity=0.391 Sum_probs=55.8
Q ss_pred HHHHhcchhhHhhcCceEeeccccccc-cCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l-~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.....|.|.....+.|+.++|..+. .+.+....|..+|.++.++.+.++.++.. .+++++.+.|+.+.++
T Consensus 156 ~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~t~ 228 (293)
T 3rih_A 156 YTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAP----RGVTVNAILPGNILTE 228 (293)
T ss_dssp HHHHHTHHHHHHHSSCEEEEECCSBTTTBBCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBCCH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeChhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhh----hCeEEEEEecCCCcCc
Confidence 334444677777778999999988775 67788889999999999998888777643 3788999999877654
No 249
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=72.51 E-value=2.5 Score=35.63 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=53.5
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.....|.|.....+.++.++|..+..+.+....|..+|..+.++.+.+..++. -.+.+++.+.|+.+.++.
T Consensus 111 ~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 183 (250)
T 2fwm_X 111 NLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELA----GSGVRCNVVSPGSTDTDM 183 (250)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTCEEEEEEECCC----
T ss_pred HHHHHHHHHHHhcCCCEEEEECchhhCCCCCCCchHHHHHHHHHHHHHHHHHHhC----ccCCEEEEEECCcccCcc
Confidence 3333446667666678999999988888888888899999999988888776653 246888888998776543
No 250
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=71.80 E-value=2.7 Score=36.00 Aligned_cols=70 Identities=30% Similarity=0.359 Sum_probs=52.8
Q ss_pred HhcchhhHhhcCceEeeccccc-cccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 126 ETFLPDMMEKNRGHIVGISSMA-GIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 126 l~~~p~~~~~~~g~i~~iss~~-~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
....|.|.....+.|+.++|.. +..+.+....|+.+|..+.++.+.+..++.. .+++++.+.|+++.+..
T Consensus 139 ~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~ 209 (267)
T 1vl8_A 139 REAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGR----YGIRVNVIAPGWYRTKM 209 (267)
T ss_dssp HHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECCBCSTT
T ss_pred HHHHHHHHHcCCcEEEEECCcchhccCCCCChhHHHHHHHHHHHHHHHHHHhcc----cCeEEEEEEeccCcccc
Confidence 3345666555678999999887 7767777788999999999988887776643 36888889998776543
No 251
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=71.65 E-value=3.2 Score=36.57 Aligned_cols=70 Identities=36% Similarity=0.540 Sum_probs=53.1
Q ss_pred hcchhhHhh------cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270 127 TFLPDMMEK------NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC 200 (352)
Q Consensus 127 ~~~p~~~~~------~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l 200 (352)
...|.+... ..|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+.+++.+.|+++.++..
T Consensus 128 ~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~~~~Y~aSKaal~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~~ 203 (319)
T 3ioy_A 128 TFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSLLK----YEIGVSVLCPGLVKSYIY 203 (319)
T ss_dssp HHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSSSHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEECCCCBC----
T ss_pred HHHHHHHHhhhccCCCCcEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHHhhh----cCCEEEEEEcCeEccCcc
Confidence 345555543 4688999999999988898889999999999988888777643 368899999998876543
No 252
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=71.54 E-value=2.5 Score=36.22 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=57.4
Q ss_pred cHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 120 ~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
....+.....|.|.....|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. +++++.+.|+.+.++
T Consensus 115 g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~-----~i~vn~v~PG~v~T~ 188 (269)
T 3vtz_A 115 GSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP-----KIRCNAVCPGTIMTP 188 (269)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHHTT-----TEEEEEEEECSBCCH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCChhHHHHHHHHHHHHHHHHHHhcC-----CCEEEEEEECCCcCc
Confidence 33334444567777777899999999999888888889999999999998888776632 578888999877654
No 253
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=70.99 E-value=1.8 Score=37.41 Aligned_cols=73 Identities=22% Similarity=0.427 Sum_probs=49.5
Q ss_pred HHHHhcchhhHhhc---CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 123 IILETFLPDMMEKN---RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 123 ~L~l~~~p~~~~~~---~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.....|.+.... .+.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+.+.++.
T Consensus 146 ~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~ 221 (280)
T 4da9_A 146 FFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLAE----TGIAVFEVRPGIIRSDM 221 (280)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHTT----TTEEEEEEEECCBCC--
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCCccHHHHHHHHHHHHHHHHHHHHHH----hCcEEEEEeecCCcCCc
Confidence 33344466666554 678999999888888888889999999999998888777643 46889999999887654
No 254
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=70.91 E-value=2.1 Score=36.04 Aligned_cols=69 Identities=33% Similarity=0.494 Sum_probs=53.5
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.|.....+.|+.++|..+..+.+....|+.+|..+.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 123 ~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~~ 191 (246)
T 2uvd_A 123 AVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELAS----RNITVNAIAPGFIATDM 191 (246)
T ss_dssp HHHHHHHHHTCEEEEEECCTHHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBGGGC
T ss_pred HHHHHHHHcCCcEEEEECCHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhh----cCeEEEEEEeccccCcc
Confidence 3456666666789999999888777788888999999999888887766643 47888999998876543
No 255
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=70.62 E-value=1 Score=38.29 Aligned_cols=62 Identities=32% Similarity=0.440 Sum_probs=48.2
Q ss_pred hcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270 135 KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC 200 (352)
Q Consensus 135 ~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l 200 (352)
...+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+++.++..
T Consensus 140 ~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gI~vn~v~PG~v~T~~~ 201 (257)
T 3tl3_A 140 EERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLAS----HRIRVMTIAPGLFDTPLL 201 (257)
T ss_dssp CCSEEEEEECCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCTTC
T ss_pred CCCcEEEEEcchhhcCCCCCCccHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEEecCccChhh
Confidence 45678999999888877777788999999999998888777643 378999999998876543
No 256
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=70.59 E-value=1.9 Score=36.54 Aligned_cols=73 Identities=30% Similarity=0.321 Sum_probs=55.2
Q ss_pred HHHhcchhhHhh------cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 124 ILETFLPDMMEK------NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 124 L~l~~~p~~~~~------~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
+.....|.|..+ ..+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.+
T Consensus 123 l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~t 198 (257)
T 3tpc_A 123 MIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAARELAR----FGIRVVTIAPGIFDT 198 (257)
T ss_dssp HHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBSC
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEEechhhccCCCCCcchHHHHHHHHHHHHHHHHHHHH----cCeEEEEEEeCCCCC
Confidence 333345555543 4678999999988888888889999999999998888777643 378999999998876
Q ss_pred CCc
Q psy5270 198 GLC 200 (352)
Q Consensus 198 ~~l 200 (352)
+..
T Consensus 199 ~~~ 201 (257)
T 3tpc_A 199 PMM 201 (257)
T ss_dssp C--
T ss_pred hhh
Confidence 543
No 257
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Probab=70.27 E-value=1.6 Score=42.38 Aligned_cols=73 Identities=30% Similarity=0.382 Sum_probs=58.8
Q ss_pred CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCc
Q psy5270 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF 193 (352)
Q Consensus 117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~ 193 (352)
|+.....+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+
T Consensus 122 Nl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~asKaal~~lt~~la~El~~----~gIrVn~v~Pg 194 (604)
T 2et6_A 122 HLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAK----YNIKANAIAPL 194 (604)
T ss_dssp HTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEEC
T ss_pred HhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCchHHHHHHHHHHHHHHHHHHHhCc----cCeEEEEEccC
Confidence 34444444555678888777899999999998888888889999999999999999888754 37889999886
No 258
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=70.19 E-value=3.2 Score=35.39 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=54.4
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. +++++.+.|+.+.+.
T Consensus 137 ~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~-----~Irvn~v~PG~v~t~ 205 (260)
T 3gem_A 137 NLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAP-----LVKVNGIAPALLMFQ 205 (260)
T ss_dssp HHHHHHHHHTSSSCEEEEECCGGGGTCCSSCHHHHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECTTCC-
T ss_pred HHHHHHHHHhcCCcEEEEECChhhcCCCCCcHhHHHHHHHHHHHHHHHHHHHCC-----CCEEEEEeecccccC
Confidence 334456666666789999999999888888889999999999998888777642 478888999877654
No 259
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=70.15 E-value=2.7 Score=35.58 Aligned_cols=68 Identities=43% Similarity=0.591 Sum_probs=53.2
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|.+.....+.|+.++|..+..+.+....|..+|..+.++.+.+..++. -.+.+++.+.|+++.++
T Consensus 120 ~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~ 187 (254)
T 1hdc_A 120 TVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELG----TDRIRVNSVHPGMTYTP 187 (254)
T ss_dssp HHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBCCH
T ss_pred HHHHHHHHcCCCEEEEECchhhccCCCCchhHHHHHHHHHHHHHHHHHHhh----hcCeEEEEEecccCcCc
Confidence 445666666678999999988888888888899999999988888776653 34688888889877654
No 260
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=70.12 E-value=3.2 Score=36.02 Aligned_cols=69 Identities=29% Similarity=0.442 Sum_probs=53.8
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.|.....+.|+.++|..+..+.+....|..+|..+.++.+.+..++.. .+++++.+.|+++.++.
T Consensus 152 ~~~~~m~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~ 220 (291)
T 3cxt_A 152 AVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGE----ANIQCNGIGPGYIATPQ 220 (291)
T ss_dssp HHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCTT
T ss_pred HHHHHHHHcCCcEEEEECccccccCCCCChHHHHHHHHHHHHHHHHHHHHhh----cCeEEEEEEECCCcCcc
Confidence 3456666666789999999888877788888999999999888887766643 36888899998876654
No 261
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=70.12 E-value=3.3 Score=35.06 Aligned_cols=69 Identities=32% Similarity=0.519 Sum_probs=53.1
Q ss_pred HhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 126 l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
....|.|.....+.++.++|..+..+.+....|+.+|..+.++.+.+..++.. .+.+++.+.|+.+.+.
T Consensus 132 ~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~ 200 (260)
T 2zat_A 132 KAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAP----RNIRVNCLAPGLIKTN 200 (260)
T ss_dssp HHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSS
T ss_pred HHHHHHHHHcCCCEEEEEechhhcCCCCCchhHHHHHHHHHHHHHHHHHHhcc----cCeEEEEEEECcccCc
Confidence 33456665556789999999888888888888999999999988887766543 3678888888877654
No 262
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=70.11 E-value=3.3 Score=34.93 Aligned_cols=69 Identities=29% Similarity=0.433 Sum_probs=53.5
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.+.....+.++.++|..+..+.+....|..+|..+.++.+.+..++. -.+.+++.+.|+.+.++.
T Consensus 122 ~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 190 (249)
T 1o5i_A 122 NYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVA----PYGITVNCVAPGWTETER 190 (249)
T ss_dssp HHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBCCTT
T ss_pred HHHHHHHHcCCcEEEEEcchHhcCCCCCCchHHHHHHHHHHHHHHHHHHhh----hcCeEEEEEeeCCCccCc
Confidence 345666666678999999998888888888899999999888887776654 346888888898776543
No 263
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=69.62 E-value=4.3 Score=34.87 Aligned_cols=69 Identities=28% Similarity=0.373 Sum_probs=52.3
Q ss_pred HhcchhhHhhcC----ceEeeccccccccCCCCcc-ccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 126 ETFLPDMMEKNR----GHIVGISSMAGIVGLPNLV-PYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 126 l~~~p~~~~~~~----g~i~~iss~~~l~~lp~l~-~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
....|.|..... +.|+.++|..+..+.+... .|..+|.++.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 145 ~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gI~vn~v~PG~v~T~ 218 (276)
T 2b4q_A 145 QQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVG----EHINVNVIAPGRFPSR 218 (276)
T ss_dssp HHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCCSCTTHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCCCST
T ss_pred HHHHHHHHhccCCCCCCEEEEECCHHHcCCCCCCccccHHHHHHHHHHHHHHHHHhcc----cCeEEEEEEeccCcCc
Confidence 334566655544 8899999988887777777 8999999999988888776643 3688888889877654
No 264
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=69.33 E-value=2.1 Score=36.81 Aligned_cols=74 Identities=36% Similarity=0.534 Sum_probs=54.5
Q ss_pred HHHHhcchhhHhhc-CceEeeccccccccCC----CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 123 IILETFLPDMMEKN-RGHIVGISSMAGIVGL----PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 123 ~L~l~~~p~~~~~~-~g~i~~iss~~~l~~l----p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
.+.....|.|..+. .+.|+.++|..+..+. +....|+.+|.++.++.+.+..++. -.+++++.+.|+.+.+
T Consensus 135 ~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~----~~gi~vn~v~PG~v~T 210 (278)
T 3sx2_A 135 HTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLA----GQMIRVNSIHPSGVET 210 (278)
T ss_dssp HHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEESCBSS
T ss_pred HHHHHHHHHHHhCCCCcEEEEEccHHhcCCCccCCCCchHhHHHHHHHHHHHHHHHHHHh----ccCcEEEEEecCCccC
Confidence 33344466666654 6889999998887666 5556799999999998888877664 3368999999998876
Q ss_pred CCc
Q psy5270 198 GLC 200 (352)
Q Consensus 198 ~~l 200 (352)
+..
T Consensus 211 ~~~ 213 (278)
T 3sx2_A 211 PMI 213 (278)
T ss_dssp TTT
T ss_pred ccc
Confidence 543
No 265
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=69.32 E-value=3 Score=35.26 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=53.5
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV 195 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~ 195 (352)
.+.....|.|..+..+.|+.++|..+..+.+....|..+|..+.++.+.+..++.. .+++++.+.|+.+
T Consensus 110 ~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v 178 (254)
T 1zmt_A 110 ALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGE----YNIPVFAIGPNYL 178 (254)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCCEEEEEESSB
T ss_pred HHHHHHHHHHHHcCCcEEEEECCcccccCCCCchHHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEecCcc
Confidence 33334466666666789999999888888888888999999999988888776643 3688888888876
No 266
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2
Probab=69.30 E-value=3.3 Score=36.70 Aligned_cols=69 Identities=19% Similarity=0.125 Sum_probs=53.9
Q ss_pred hcchhhHhhc------CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKN------RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~------~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.|.... .+.|+.++|..+..+.+....|..+|.++.++...+..++.. .+++++.+.|+++.+..
T Consensus 197 ~~~~~m~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~----~gIrvn~v~PG~v~T~~ 271 (328)
T 2qhx_A 197 AFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAP----LQIRVNGVGPGLSVLVD 271 (328)
T ss_dssp HHHHHHHHSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBSCCC
T ss_pred HHHHHHHhcCCcCCCCCcEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh----cCcEEEEEecCcccCCc
Confidence 3455565544 689999999888888888889999999999988888777643 37889999998876654
No 267
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=69.09 E-value=3 Score=35.38 Aligned_cols=71 Identities=23% Similarity=0.269 Sum_probs=55.0
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.+.....+.++.++|..+..+.+....|..+|..+.++.+.+..++.. .+++++.+.|+++.++.
T Consensus 124 ~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~~ 194 (260)
T 2z1n_A 124 GRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAP----HGVTVNAVLPSLILTDR 194 (260)
T ss_dssp HHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHTHHHHHHHHHHHHHHGG----GTEEEEEEEECHHHHCC
T ss_pred HHHHHHHHHhcCCcEEEEECchhhcCCCCCCchhHHHHHHHHHHHHHHHHHHhh----hCeEEEEEEECCcccch
Confidence 334456666666789999999888888888888999999999888887766643 36888899998886654
No 268
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=68.91 E-value=2.4 Score=36.28 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=55.6
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.+.....+.++.++|..+..+.+....|+.+|.++..+.+.+..++. ..+.+++.+.|+++.++.
T Consensus 146 ~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~----~~gi~v~~v~PG~v~T~~ 216 (271)
T 4iin_A 146 CREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGA----LRNIRFNSVTPGFIETDM 216 (271)
T ss_dssp HHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHH----TTTEEEEEEEECSBCCC-
T ss_pred HHHHHHHHhhcCCCEEEEEechhhcCCCCCchHhHHHHHHHHHHHHHHHHHHH----HhCcEEEEEEeCcccCCc
Confidence 33445666666778999999988888888888999999999998888776654 347888999998887654
No 269
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=68.15 E-value=3.2 Score=35.15 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=53.2
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.....|.|.....+.++.++|..+..+.+....|..+|..+.++.+.+..++.. .+.+++.+.|+.+.++
T Consensus 116 ~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~ 185 (256)
T 2d1y_A 116 SALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAP----LRIRVNAVAPGAIATE 185 (256)
T ss_dssp HHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCH
T ss_pred HHHHHHHHHhcCCcEEEEEccccccCCCCCChhHHHHHHHHHHHHHHHHHHHhh----cCeEEEEEeeCCccCc
Confidence 333456666656789999999888877888888999999999988887766542 3678888888877553
No 270
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=68.14 E-value=2.7 Score=36.53 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=48.6
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.|+.++|..+..+.+....|..+|.++.++.+.++.++.. .+++++.+.|+++.+..
T Consensus 162 ~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~ 220 (293)
T 3grk_A 162 GGSILTLTYYGAEKVMPNYNVMGVAKAALEASVKYLAVDLGP----QNIRVNAISAGPIKTLA 220 (293)
T ss_dssp CEEEEEEECGGGTSBCTTTTHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCCCC--
T ss_pred CCEEEEEeehhhccCCCchHHHHHHHHHHHHHHHHHHHHHhH----hCCEEEEEecCCCcchh
Confidence 689999999988888888889999999999999888877643 37899999998876643
No 271
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=67.78 E-value=3.2 Score=34.87 Aligned_cols=68 Identities=32% Similarity=0.346 Sum_probs=51.7
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.|.....+.|+.++|.. ..+.+....|+.+|..+.++.+.+..++.. .+++++.+.|+++.++.
T Consensus 118 ~~~~~m~~~~~g~iv~isS~~-~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~~ 185 (245)
T 1uls_A 118 AASEAMREKNPGSIVLTASRV-YLGNLGQANYAASMAGVVGLTRTLALELGR----WGIRVNTLAPGFIETRM 185 (245)
T ss_dssp HHHHHHTTTCCEEEEEECCGG-GGCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCTT
T ss_pred HHHHHHHhcCCCEEEEEccch-hcCCCCchhHHHHHHHHHHHHHHHHHHHhH----hCeEEEEEEeCcCcCcc
Confidence 345666555678999998877 666777788999999999888887776643 47889999998876653
No 272
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=67.42 E-value=3 Score=36.02 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=48.1
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 173 ~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~t~~ 231 (288)
T 2x9g_A 173 NLSIVNLCDAMVDQPCMAFSLYNMGKHALVGLTQSAALELAP----YGIRVNGVAPGVSLLPV 231 (288)
T ss_dssp CEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSCSCCT
T ss_pred CeEEEEEecccccCCCCCCchHHHHHHHHHHHHHHHHHHhhc----cCeEEEEEEeccccCcc
Confidence 578999999888888888888999999999988888776643 36888899998776543
No 273
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=67.34 E-value=3.3 Score=34.99 Aligned_cols=69 Identities=35% Similarity=0.505 Sum_probs=52.5
Q ss_pred HhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 126 ETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 126 l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
....|.+.... .+.++.++|..+..+.+....|..+|..+.++.+.+..++.. .+++++.+.|+++.++
T Consensus 119 ~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~ 188 (256)
T 1geg_A 119 QAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAP----LGITVNGYCPGIVKTP 188 (256)
T ss_dssp HHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBSSH
T ss_pred HHHHHHHHhcCCCCEEEEECchhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH----cCeEEEEEEECCCccc
Confidence 33456665555 689999999888878888888999999999988887766643 3688888889877553
No 274
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=67.30 E-value=4.7 Score=33.90 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=52.8
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.+..+ .|.++.++|..+..+.+....|..+|.++.++.+.++.++.. ..+++.+.|+.+.++.
T Consensus 116 ~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~-----~i~vn~v~PG~v~t~~ 182 (247)
T 3dii_A 116 LCRDELIKN-KGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-----DVLVNCIAPGWINVTE 182 (247)
T ss_dssp HHHHHHHHT-TCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTT-----TSEEEEEEECSBCCCC
T ss_pred HHHHHHHHc-CCEEEEEcchhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHCC-----CcEEEEEEeCccCCcc
Confidence 334555444 789999999999888888889999999999999888877642 2778889998876653
No 275
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=67.26 E-value=3.8 Score=34.19 Aligned_cols=71 Identities=27% Similarity=0.346 Sum_probs=52.8
Q ss_pred HHHhcchhhHhhcCceEeeccccccccCC--CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLPDMMEKNRGHIVGISSMAGIVGL--PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p~~~~~~~g~i~~iss~~~l~~l--p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....|.|.....+.++.++|..+..+. +....|..+|..+.++.+.+..++.. .+.+++.+.|+++.++
T Consensus 108 ~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~ 180 (239)
T 2ekp_A 108 LAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWAR----LGIRVNLLCPGYVETE 180 (239)
T ss_dssp HHHHHHHHHHHHTCEEEEEECCGGGTSCCTTSCCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSG
T ss_pred HHHHHHHHHHHcCCcEEEEECchhhccCCCCCCCccHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEEeCCccCc
Confidence 33344566666667899999988887766 66778999999998888877766543 4688888889877654
No 276
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=67.14 E-value=4.1 Score=34.92 Aligned_cols=71 Identities=34% Similarity=0.481 Sum_probs=55.3
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.+.....+.++.++|..+..+.+....|..+|..+..+...+..++.. .+.+++.+.|+.+.++.
T Consensus 118 ~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~~ 188 (281)
T 3m1a_A 118 TRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAP----FGIKVLIVEPGAFRTNL 188 (281)
T ss_dssp HHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCCTT
T ss_pred HHHHHHHHHhcCCCEEEEEcCccccCCCCCchHHHHHHHHHHHHHHHHHHHhhc----cCcEEEEEecCcccccc
Confidence 334456666667789999999998888888889999999999888887766543 36888888898776544
No 277
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=67.02 E-value=2.8 Score=35.30 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=48.5
Q ss_pred HhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 126 l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
....|.|.....+.++.++|..+..+.+....|..+|..+.++.+.+..++.. .+.+++.+.|+++.++
T Consensus 121 ~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~ 189 (247)
T 1uzm_A 121 QRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSK----ANVTANVVAPGYIDTD 189 (247)
T ss_dssp HHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCH
T ss_pred HHHHHHHHhCCCCEEEEECCHhhccCCCCChhHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEEeCCCccc
Confidence 33456665556689999999888777777888999999999888887766542 4688888888877553
No 278
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=66.99 E-value=3.1 Score=34.83 Aligned_cols=74 Identities=34% Similarity=0.451 Sum_probs=56.5
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.....|.+.....+.++.++|..+..+.+....|+.+|.++.++.+.+..++.. ..+.+++.+.|+++.++.
T Consensus 132 ~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~---~~~i~v~~v~PG~v~t~~ 205 (247)
T 3i1j_A 132 MLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELEG---VTAVRANSINPGATRTGM 205 (247)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTT---TSSEEEEEEECCCCSSHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEcchhhcCCCCCcchhHHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCcccCcc
Confidence 33344456666666789999999888888888889999999999988888766531 247889999998886643
No 279
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=66.99 E-value=3.7 Score=36.30 Aligned_cols=74 Identities=28% Similarity=0.335 Sum_probs=54.3
Q ss_pred cHHHHHHhcchhhHhhcCceEeecccccccc-CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIV-GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 120 ~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~-~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
....+.....|.|..+..|.++.++|..+.. ..+....|+.+|.++.++...+..++.. .+++++.+.|+.+.+
T Consensus 121 g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~el~~----~gI~v~~v~PG~v~t 195 (324)
T 3u9l_A 121 STQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSR----WGIETSIIVPGAFTS 195 (324)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHT----TTEEEEEEEECCC--
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCCcchhHHHHHHHHHHHHHHHHHHhhh----hCcEEEEEECCcccc
Confidence 3333444456777777789999999888773 4566778999999999998888777643 478888999987754
No 280
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=66.94 E-value=3.4 Score=35.03 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=53.0
Q ss_pred HhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 126 l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
....|.+.....+.++.++|..+..+.+....|+.+|..+.++.+.+..++.. .+.+++.+.|+.+.++
T Consensus 125 ~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~ 193 (263)
T 3ai3_A 125 RGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIK----DNIRVNCINPGLILTP 193 (263)
T ss_dssp HHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCCH
T ss_pred HHHHHHHHHcCCcEEEEECchhhcCCCCCcchHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEecCcccCc
Confidence 33456666666789999999888888888888999999999888887766542 3688888888877553
No 281
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=66.85 E-value=1.7 Score=37.32 Aligned_cols=78 Identities=15% Similarity=0.289 Sum_probs=55.5
Q ss_pred CcccHHHHHHhcchhhHhhcCceEeeccccccccC--CCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCc-
Q psy5270 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF- 193 (352)
Q Consensus 117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~--lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~- 193 (352)
|+.....+.....|.|.....+.|+.++|..+..+ .+....|+.+|.++.++.+.+..++.. .+++++.+.|+
T Consensus 121 N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~----~gI~vn~v~PG~ 196 (274)
T 3e03_A 121 NARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGP----QGVAINALWPRT 196 (274)
T ss_dssp THHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEECSB
T ss_pred hhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhh----cCEEEEEEECCc
Confidence 33333444445567777777789999988777655 455667999999999998888777643 36899999998
Q ss_pred ccccC
Q psy5270 194 MVDTG 198 (352)
Q Consensus 194 ~~~~~ 198 (352)
.+.+.
T Consensus 197 ~v~T~ 201 (274)
T 3e03_A 197 VIATD 201 (274)
T ss_dssp CBCC-
T ss_pred ccccc
Confidence 45554
No 282
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=66.45 E-value=3.3 Score=35.08 Aligned_cols=71 Identities=28% Similarity=0.340 Sum_probs=53.2
Q ss_pred HHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....|.|.....+.++.++|..+..+.+....|..+|..+.++.+.+..++. -.+.+++.+.|+.+.++
T Consensus 125 ~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~ 195 (260)
T 2ae2_A 125 LSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWA----KDNIRVNGVGPGVIATS 195 (260)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTG----GGTEEEEEEEECSBCSH
T ss_pred HHHHHHHHHHhcCCcEEEEEcchhhccCCCCcchHHHHHHHHHHHHHHHHHHHh----hcCcEEEEEecCCCCCc
Confidence 333445666666678999999988887888888899999999988887776653 23688888888876553
No 283
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=65.61 E-value=5 Score=34.41 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=52.9
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCC-CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGL-PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~l-p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..+.....|.+.... +.++.++|..+..+. +....|+.+|..+.++.+.+..++.. .+.+++.+.|+.+.++
T Consensus 126 ~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~ 198 (280)
T 1xkq_A 126 IEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAK----FGIRVNSVSPGMVETG 198 (280)
T ss_dssp HHHHHHHHHHHHHHT-CEEEEECCGGGSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECCBCSS
T ss_pred HHHHHHHHHHhhcCC-CcEEEecCccccCCCCCcccHHHHHHHHHHHHHHHHHHHhcc----CCeEEEEEeeCcCcCC
Confidence 333334456555444 899999988877766 77788999999999888887776643 4688899999877664
No 284
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}
Probab=65.38 E-value=2.7 Score=35.24 Aligned_cols=66 Identities=26% Similarity=0.284 Sum_probs=51.3
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|.+.. .+.++.++|..+..+.+....|+.+|..+.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 111 ~~~~~~~~--~g~iv~~sS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~ 176 (244)
T 4e4y_A 111 GLENNLKV--GASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAK----YQIRVNTVCPGTVDTD 176 (244)
T ss_dssp HTGGGEEE--EEEEEEECCGGGTCCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEESCBCCH
T ss_pred HHHHHhcc--CcEEEEECCHHHccCCCCCchhHHHHHHHHHHHHHHHHHHHH----cCeEEEEEecCccCch
Confidence 33444433 278999999888888888889999999999998888777643 3788999999877654
No 285
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=65.36 E-value=4 Score=35.06 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=51.9
Q ss_pred chhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.|.+... .+.++.++|..+..+.+....|..+|.++..+.+.+..++.. .+++++.+.|+.+.+..
T Consensus 151 ~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~ 216 (280)
T 3nrc_A 151 RSMMKNR-NASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGE----DGIKVNAVSAGPIKTLA 216 (280)
T ss_dssp HHHHTTT-TCEEEEEECGGGTSCCTTTHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECCCCCSG
T ss_pred HHHhhcC-CCeEEEEeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH----cCcEEEEEeeccccchh
Confidence 3444333 689999999998888888889999999999998888777643 36888999998876643
No 286
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=64.97 E-value=3.7 Score=34.73 Aligned_cols=72 Identities=29% Similarity=0.340 Sum_probs=50.6
Q ss_pred HHHhcchhhHhhc----CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 124 ILETFLPDMMEKN----RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 124 L~l~~~p~~~~~~----~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
+.....|.+..+. .+.++.++|..+..+.+....|+.+|.++..+.+.+..++.. .+.+++.+.|+.+.++.
T Consensus 122 l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~~ 197 (261)
T 3n74_A 122 MTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAP----AKIRVVALNPVAGETPL 197 (261)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEEC------
T ss_pred HHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCCccHHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEecCcccChh
Confidence 3334455555443 567999999888888888888999999999998888777643 47888899998876654
No 287
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=64.51 E-value=2.9 Score=35.37 Aligned_cols=69 Identities=33% Similarity=0.465 Sum_probs=52.6
Q ss_pred HhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 126 l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
....|.+.....+.++.++|..+..+.+....|..+|..+.++.+.+..++. -.+.+++.+.|+.+.++
T Consensus 119 ~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~ 187 (255)
T 2q2v_A 119 RLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETA----TSNVTCNAICPGWVLTP 187 (255)
T ss_dssp HHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHTT----TSSEEEEEEEESSBCCH
T ss_pred HHHHHHHHHcCCcEEEEEcCchhccCCCCchhHHHHHHHHHHHHHHHHHHhc----ccCcEEEEEeeCCCcCc
Confidence 3345666666668999999988888888888899999999888887776653 24688888888876553
No 288
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=64.16 E-value=2.2 Score=36.72 Aligned_cols=71 Identities=23% Similarity=0.366 Sum_probs=51.5
Q ss_pred HHhcchhhHhhcCc-eEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~~g-~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.|.....+ .|+.++|..+..+.+....|..+|..+.++.+.+..++. -.+++++.+.|+.+.++.
T Consensus 137 ~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~el~----~~gIrvn~v~PG~v~T~~ 208 (272)
T 2nwq_A 137 TRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQ----GTGVRVTNLEPGLCESEF 208 (272)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHTTCT----TSCCEEEEEEECSBC---
T ss_pred HHHHHHHHHhcCCCcEEEEeCCchhccCCCCCchHHHHHHHHHHHHHHHHHHhC----ccCeEEEEEEcCCCcCcc
Confidence 33445666666667 999999988888888888899999988888776655442 246888889998876653
No 289
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=64.02 E-value=4.8 Score=34.16 Aligned_cols=69 Identities=42% Similarity=0.582 Sum_probs=52.7
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.+.....+.++.++|..+..+.+....|..+|..+.++...+..++. -.+.+++.+.|+.+.++.
T Consensus 122 ~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 190 (260)
T 1nff_A 122 AVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELG----PSGIRVNSIHPGLVKTPM 190 (260)
T ss_dssp HHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCBCSGG
T ss_pred HHHHHHHhcCCCEEEEEeehhhcCCCCCchhHHHHHHHHHHHHHHHHHHhC----ccCcEEEEEEeCCCCCCc
Confidence 345666666678999999988887778778899999999888887776653 246888888898776543
No 290
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=63.48 E-value=4.6 Score=34.25 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=52.9
Q ss_pred HhcchhhHhh-cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 126 ETFLPDMMEK-NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 126 l~~~p~~~~~-~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
....|.+... ..+.++.++|..+..+.+....|+.+|.++..+...+..++. -.+.+++.+.|+.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~----~~gi~v~~v~PG~v~t~~ 211 (266)
T 3o38_A 141 RAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAV----EFGVRINAVSPSIARHKF 211 (266)
T ss_dssp HHHHHHHHTSSCCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCCCC--
T ss_pred HHHHHHHHhcCCCeEEEEeCCHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHH----HcCcEEEEEeCCcccchh
Confidence 3345556554 557899999988888888888999999999998888877664 346888999998876654
No 291
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}
Probab=63.34 E-value=4.4 Score=35.58 Aligned_cols=69 Identities=22% Similarity=0.222 Sum_probs=36.6
Q ss_pred HhcchhhHhhcCceEeeccccccccCCCCc-cccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNL-VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 126 l~~~p~~~~~~~g~i~~iss~~~l~~lp~l-~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
....|.|.. .|.|+.++|..+..+.+.. ..|+.+|.++.++.+.+..++.. -.+++++.+.|+++.++.
T Consensus 175 ~~~~~~m~~--~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~---~~gIrvn~v~PG~v~T~~ 244 (319)
T 2ptg_A 175 QHFLPLMKE--GGSALALSYIASEKVIPGYGGGMSSAKAALESDCRTLAFEAGR---ARAVRVNCISAGPLKSRA 244 (319)
T ss_dssp HHHGGGEEE--EEEEEEEEECC------------------THHHHHHHHHHHHH---HHCCEEEEEEECCCC---
T ss_pred HHHHHHHhc--CceEEEEeccccccccCccchhhHHHHHHHHHHHHHHHHHhcc---ccCeeEEEEeeCCccChh
Confidence 334555543 3789999888887777776 58999999999999999888753 127899999999887654
No 292
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=63.17 E-value=5.4 Score=34.67 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=50.8
Q ss_pred hcchhhHhhcCceEeeccccccccCC-CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGL-PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~l-p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|.+.... +.|+.++|..+..+. +....|..+|..+.++.+.+..++. -.+.+++.+.|+.+.++
T Consensus 149 ~~~~~~~~~~-g~IV~isS~~~~~~~~~~~~~Y~asKaa~~~l~~~la~el~----~~gI~v~~v~PG~v~T~ 216 (297)
T 1xhl_A 149 KTKEHLIKTK-GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLI----QHGVRVNSVSPGAVATG 216 (297)
T ss_dssp HHHHHHHHTT-CEEEEECCGGGSSSCCTTSHHHHHHHHHHHHHHHHHHHHHG----GGTCEEEEEEECCBCSS
T ss_pred HHHHHHHhcC-CEEEEEcCchhccCCCCCcchHHHHHHHHHHHHHHHHHHhc----ccCeEEEEEeeCCCcCc
Confidence 3455565444 899999998877766 7777899999999988888776654 24788889999877664
No 293
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=63.15 E-value=5.6 Score=33.96 Aligned_cols=68 Identities=31% Similarity=0.445 Sum_probs=51.2
Q ss_pred hcchhhHhhcCceEeecccccc-ccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~-l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.|.... +.++.++|..+ ..+.+....|+.+|..+.++.+.+..++. -.+.+++.+.|+.+.++.
T Consensus 131 ~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 199 (278)
T 1spx_A 131 KAVPHLSSTK-GEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLI----QHGIRVNSISPGLVATGF 199 (278)
T ss_dssp HHHHHHHHHT-CEEEEECCTTSSSSCCTTSHHHHHHHHHHHHHHHHHHHHHG----GGTCEEEEEEECCBCCCC
T ss_pred HHHHHHhhcC-CeEEEEecccccccCCCCccHHHHHHHHHHHHHHHHHHHHH----hcCcEEEEEecCcccCcc
Confidence 3355555444 89999999887 77778778899999999988887776653 236888889998876543
No 294
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=62.66 E-value=4.6 Score=35.05 Aligned_cols=65 Identities=25% Similarity=0.320 Sum_probs=51.9
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..|.+.. .|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 171 ~~~~~~~--~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~t~ 235 (294)
T 3r3s_A 171 AIPLLPK--GASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAE----KGIRVNIVAPGPIWTA 235 (294)
T ss_dssp HGGGCCT--TCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBCSH
T ss_pred HHHHhhc--CCEEEEECChhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh----cCeEEEEEecCcCccc
Confidence 3454432 479999999999988888889999999999998888877643 3788999999887664
No 295
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*
Probab=62.65 E-value=2.2 Score=36.19 Aligned_cols=68 Identities=25% Similarity=0.257 Sum_probs=52.0
Q ss_pred HHhcchhhHhh--cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 125 LETFLPDMMEK--NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 125 ~l~~~p~~~~~--~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.....|.|..+ ..+.|+.++|..+..+.+....|+.+|..+.++.+.+..++. .++++.+.|+++.++
T Consensus 134 ~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~------~i~vn~v~PG~v~T~ 203 (259)
T 1oaa_A 134 TSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAAEEP------SVRVLSYAPGPLDND 203 (259)
T ss_dssp HHHHHHTSCCCTTCEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHCT------TEEEEEEECCSBSSH
T ss_pred HHHHHHHHhhccCCCceEEEEcCchhcCCCCCccHHHHHHHHHHHHHHHHHhhCC------CceEEEecCCCcCcc
Confidence 33345555544 457899999998888888888999999999998888876652 388889999877654
No 296
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=62.64 E-value=8.1 Score=32.61 Aligned_cols=70 Identities=31% Similarity=0.285 Sum_probs=50.9
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.|.....+.|+.++|..+....+ ...|+.+|..+.++...+..++.. .+.+++.+.|+++.++.
T Consensus 129 ~~~~~~~~~~~~~g~iv~isS~~~~~~~~-~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 129 SVYGARLMVPAGQGLIVVISSPGSLQYMF-NVPYGVGKAACDKLAADCAHELRR----HGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp HHHHHHHHGGGTCCEEEEECCGGGTSCCS-SHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEECCCSCTTT
T ss_pred HHHHHHHHhhcCCcEEEEEcChhhcCCCC-CCchHHHHHHHHHHHHHHHHHhcc----CCeEEEEEecCccccHH
Confidence 33345666666678999999887765433 357889999999888887766543 47889999999887654
No 297
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=62.45 E-value=4 Score=34.21 Aligned_cols=72 Identities=32% Similarity=0.521 Sum_probs=52.5
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCC-CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLP-NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp-~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.....|.|.....+.++.++|..+..+.+ ....|..+|..+.++.+.+..++.. .+.+++.+.|+.+.++
T Consensus 111 ~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~ 183 (246)
T 2ag5_A 111 LMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQ----QGIRCNCVCPGTVDTP 183 (246)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESCEECH
T ss_pred HHHHHHHHHHHhcCCceEEEEechHhCcCCCCCCccHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEeeCcCcCc
Confidence 3334445666666678999999887776666 6678999999998888877766532 3678888888876553
No 298
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=62.29 E-value=5 Score=34.01 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=48.9
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+.+++.+.|+.+.+..
T Consensus 140 ~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~ 198 (266)
T 3oig_A 140 GGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGK----ENIRVNSISAGPIRTLS 198 (266)
T ss_dssp CEEEEEEECGGGTSCCTTTHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCCCSGG
T ss_pred CceEEEEecccccccCCCcchhHHHHHHHHHHHHHHHHHHhh----cCcEEEEEecCcccccc
Confidence 578999999998888888889999999999998888777643 36889999998876643
No 299
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=62.07 E-value=4.5 Score=33.94 Aligned_cols=59 Identities=31% Similarity=0.478 Sum_probs=48.9
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.++.++|..+..+.+....|+.+|.++.++.+.+..++.. .+.+++.+.|+++.++.
T Consensus 140 ~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~~ 198 (255)
T 3icc_A 140 NSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGA----RGITVNAILPGFVKTDM 198 (255)
T ss_dssp EEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECCBCCSS
T ss_pred CCEEEEeCChhhccCCCCcchhHHhHHHHHHHHHHHHHHHHh----cCeEEEEEEEeeecccc
Confidence 468999999988888898899999999999988888776643 36889999999887654
No 300
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=61.95 E-value=4.6 Score=34.48 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=50.1
Q ss_pred cchhhHhhcCceEeeccccc-cccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 128 FLPDMMEKNRGHIVGISSMA-GIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~-~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..|.+.. .|.|+.++|.. ...+.+....|..+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 138 ~~~~~~~--~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~T~~ 204 (270)
T 3is3_A 138 AYRHLTE--GGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGD----KKITVNAVAPGGTVTDM 204 (270)
T ss_dssp HHHHCCT--TCEEEEECCTTTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBCSTT
T ss_pred HHHHHhc--CCeEEEEeCchhccCCCCCCchhHHHHHHHHHHHHHHHHHhcc----cCeEEEEEEeCCccChh
Confidence 3444433 57899988876 5566777888999999999998888777643 37899999999887654
No 301
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=61.81 E-value=3.7 Score=35.43 Aligned_cols=73 Identities=23% Similarity=0.364 Sum_probs=53.3
Q ss_pred HHHHHHhcchhhHhhcCceEeeccccccccCC-CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCc-cccc
Q psy5270 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGL-PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF-MVDT 197 (352)
Q Consensus 121 L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~l-p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~-~~~~ 197 (352)
...+.....|.|..+..+.|+.++|..+..+. +....|+.+|.++.++.+.++.++.. .+++++.+.|+ .+.+
T Consensus 128 ~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~----~gI~vn~v~PG~~v~t 202 (285)
T 3sc4_A 128 TYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRD----AGIASNTLWPRTTVAT 202 (285)
T ss_dssp HHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGGSCSHHHHHHHHHHHHHHHHHHHHTGG----GTCEEEEEECSSCBCC
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECChhhccCCCCCCchHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEeCCCcccc
Confidence 33344445677776677899999987776654 56678999999999988888776643 47889999998 4544
No 302
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=61.78 E-value=2.9 Score=35.48 Aligned_cols=59 Identities=37% Similarity=0.402 Sum_probs=49.3
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 131 ~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~T~~ 189 (255)
T 4eso_A 131 GGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLP----RGIRVNSVSPGFIDTPT 189 (255)
T ss_dssp EEEEEEECCGGGSSBCTTBHHHHHHHHHHHHHHHHHHHHTGG----GTCEEEEEEECSBCCSS
T ss_pred CCEEEEECChhhcCCCCCchHHHHHHHHHHHHHHHHHHHHhh----hCcEEEEEecCcccCcc
Confidence 478999999999888888889999999999998888777643 37889999999887654
No 303
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=61.17 E-value=5.5 Score=34.12 Aligned_cols=61 Identities=33% Similarity=0.414 Sum_probs=50.0
Q ss_pred hcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 135 KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 135 ~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...+.|+.++|..+..+.+....|+.+|.++..+.+.+..++.. .+.+++.+.|+++.++.
T Consensus 164 ~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~ 224 (281)
T 3ppi_A 164 GERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARDLSS----AGIRVNTIAPGTMKTPI 224 (281)
T ss_dssp SCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCHH
T ss_pred CCCeEEEEEecccccCCCCCCcccHHHHHHHHHHHHHHHHHHhh----cCeEEEEEecCcCCchh
Confidence 45678999999999988888899999999999988888777643 36888899998876543
No 304
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Probab=60.90 E-value=7.9 Score=33.41 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=51.7
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCc-cccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNL-VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l-~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.|.. .+.|+.++|..+..+.+.. ..|+.+|.++.++.+.+..++.. -.+++++.+.|+.+.++.
T Consensus 162 ~~~~~m~~--~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~---~~gi~vn~v~PG~v~T~~ 230 (297)
T 1d7o_A 162 HFLPIMNP--GGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGR---KQNIRVNTISAGPLGSRA 230 (297)
T ss_dssp HHGGGEEE--EEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHH---HHCCEEEEEEECCCBCCC
T ss_pred HHHHHhcc--CceEEEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHhCc---ccCcEEEEEeccccccch
Confidence 33455433 3789999988887777776 58999999999999998887753 127899999999887654
No 305
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=60.60 E-value=5.8 Score=34.09 Aligned_cols=71 Identities=30% Similarity=0.359 Sum_probs=53.7
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.....|.+... .+.++.++|..+..+.+....|+.+|.++.++.+.++.++.. .++++.+.|+++.++.
T Consensus 121 ~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~-----~Irvn~v~PG~v~T~~ 191 (281)
T 3zv4_A 121 HAVKACLPALVSS-RGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAP-----HVRVNGVAPGGMNTDL 191 (281)
T ss_dssp HHHHHHHHHHHHH-TCEEEEECCGGGTSSSSSCHHHHHHHHHHHHHHHHHHHHHTT-----TSEEEEEEECSSCC--
T ss_pred HHHHHHHHHHHhc-CCeEEEEecchhccCCCCCchhHHHHHHHHHHHHHHHHHhcC-----CCEEEEEECCcCcCCc
Confidence 3333445666544 489999999888888888888999999999999888877642 2888999999887654
No 306
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}
Probab=60.50 E-value=4 Score=34.16 Aligned_cols=68 Identities=32% Similarity=0.437 Sum_probs=41.1
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.+... .+.++.++|..+..+.+....|..+|.++.++...+..++. -.+.+++.+.|+.+.++.
T Consensus 116 ~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~----~~gi~v~~v~PG~v~t~~ 183 (245)
T 3e9n_A 116 QLLPALRAA-SGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEA----NNGIRVSTVSPGPTNTPM 183 (245)
T ss_dssp HHHHHHHHH-TCEEEEEC----------CHHHHHHHHHHHHHHHHHHHHHG----GGTCEEEEEEECCC----
T ss_pred HHHHHHhhc-CCeEEEEcCcccccCCCCchHHHHHHHHHHHHHHHHHHHhh----hcCeEEEEEecCCccCch
Confidence 334555443 48999999988888888888999999999988888776654 336888889998776653
No 307
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=59.64 E-value=5 Score=34.25 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=47.1
Q ss_pred ceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 138 g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.|+.++|..+..+.+....|+.+|..+.++...+..++.. .+++++.+.|+.+.++
T Consensus 162 g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~----~gi~v~~v~PG~v~t~ 218 (276)
T 1mxh_A 162 LSVVNLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELAP----RHIRVNAVAPGLSLLP 218 (276)
T ss_dssp EEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBSCC
T ss_pred cEEEEECchhhcCCCCCCeehHHHHHHHHHHHHHHHHHHhh----cCeEEEEEecCcccCC
Confidence 78999999888888888888999999999988887766643 3688899999877664
No 308
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=59.44 E-value=2.6 Score=35.28 Aligned_cols=67 Identities=30% Similarity=0.547 Sum_probs=51.7
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..|.+... .+.|+.++|..+..+.+....|+.+|.++.++.+.+..++. -.+.+++.+.|+.+.++.
T Consensus 119 ~~~~~~~~-~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~----~~gi~v~~v~PG~v~T~~ 185 (235)
T 3l6e_A 119 TVRLIGER-GGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELK----DSPLRLVNLYPSGIRSEF 185 (235)
T ss_dssp HHHHHTTT-CEEEEEECCEECCSSCSSHHHHHHHHHHHHHHHHHHHHHTT----TSSEEEEEEEEEEECCCC
T ss_pred HHHHHHHc-CCEEEEEeCHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHhh----ccCCEEEEEeCCCccCcc
Confidence 34555433 35899999988888888888999999999998888776653 347889999999887654
No 309
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=59.35 E-value=7.1 Score=32.95 Aligned_cols=76 Identities=21% Similarity=0.216 Sum_probs=53.7
Q ss_pred cHHHHHHhcchhhHhhcCceEeecccc-cc-ccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 120 NLQIILETFLPDMMEKNRGHIVGISSM-AG-IVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 120 ~L~~L~l~~~p~~~~~~~g~i~~iss~-~~-l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
....+.....|.+.....+.++.+++. .. ..+.+....|+.+|.++..+.+.+..++.. .+.+++.+.|+.+.+
T Consensus 121 g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~t 196 (264)
T 3i4f_A 121 AVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAE----YGITANMVCPGDIIG 196 (264)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCCCG
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEeechhcccCCCCCCchhHHHHHHHHHHHHHHHHHhhh----cCcEEEEEccCCccC
Confidence 333344445677777777889888766 33 445666678999999999988888776643 368888999987765
Q ss_pred CC
Q psy5270 198 GL 199 (352)
Q Consensus 198 ~~ 199 (352)
+.
T Consensus 197 ~~ 198 (264)
T 3i4f_A 197 EM 198 (264)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 310
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=59.30 E-value=6.3 Score=33.34 Aligned_cols=68 Identities=38% Similarity=0.537 Sum_probs=51.2
Q ss_pred hcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|.+.... .+.++.++|..+..+.+....|..+|..+.++.+.+..++.. .+.+++.+.|+.+.++
T Consensus 127 ~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~ 195 (263)
T 3ak4_A 127 IACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAP----KNIRVNCVCPGFVKTA 195 (263)
T ss_dssp HHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBTTH
T ss_pred HHHHHHHhcCCCeEEEEecccccccCCCCchhHHHHHHHHHHHHHHHHHHHhH----cCeEEEEEecccccCh
Confidence 3456665555 689999999888877788888999999999888887766532 3678888888876543
No 311
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=58.92 E-value=7.9 Score=33.22 Aligned_cols=66 Identities=23% Similarity=0.187 Sum_probs=50.4
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..|.+.. ..+.|+.++|..+..+.+....|..+|.++.++...+..++.. .+++++.+.|+.+.++
T Consensus 145 ~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~ 210 (285)
T 2p91_A 145 LLPLMEG-RNGAIVTLSYYGAEKVVPHYNVMGIAKAALESTVRYLAYDIAK----HGHRINAISAGPVKTL 210 (285)
T ss_dssp HGGGGTT-SCCEEEEEECGGGTSBCTTTTHHHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECCCCCS
T ss_pred HHHHHHH-cCCEEEEEccchhccCCCCccHHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEEeCcccCc
Confidence 3455543 2589999999888777777788999999999988888776643 3688899999877664
No 312
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Probab=58.79 E-value=8.1 Score=32.40 Aligned_cols=67 Identities=27% Similarity=0.262 Sum_probs=50.7
Q ss_pred cchhhHhhc---CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 128 FLPDMMEKN---RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 128 ~~p~~~~~~---~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..|.+.... .+.++.++|..+..+.+....|+.+|..+..+...+..++.. .+.+++.+.|+.+.++
T Consensus 118 ~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~----~gi~v~~v~Pg~v~t~ 187 (254)
T 1sby_A 118 ILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPI----TGVTAYSINPGITRTP 187 (254)
T ss_dssp HHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHHHHHHHHHHHHHHHHHHHH----HSEEEEEEEECSEESH
T ss_pred HHHHHHHhcCCCCCEEEEECchhhccCCCCchHHHHHHHHHHHHHHHHHHHhcc----CCeEEEEEecCCccCc
Confidence 345554433 578999999888888888888999999999988887765543 3678888889877654
No 313
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=58.00 E-value=5.3 Score=33.95 Aligned_cols=68 Identities=35% Similarity=0.561 Sum_probs=53.3
Q ss_pred chhhH-hhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270 129 LPDMM-EKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC 200 (352)
Q Consensus 129 ~p~~~-~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l 200 (352)
.+.+. ....+.++.++|..+..+.+....|+.+|.++..+.+.+..++.. .+.+++.+.|+.+.++..
T Consensus 147 ~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~~~ 215 (267)
T 4iiu_A 147 IMPMIGARQGGRIITLSSVSGVMGNRGQVNYSAAKAGIIGATKALAIELAK----RKITVNCIAPGLIDTGMI 215 (267)
T ss_dssp HHHHHHHTSCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSTTC
T ss_pred HHHHHhcCCCcEEEEEcchHhccCCCCCchhHHHHHHHHHHHHHHHHHHhh----cCeEEEEEEEeeecCCcc
Confidence 44554 455689999999888888888889999999999988888777643 368888999988876543
No 314
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=56.68 E-value=4.4 Score=34.77 Aligned_cols=68 Identities=37% Similarity=0.559 Sum_probs=51.2
Q ss_pred hcchh--hHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPD--MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~--~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|. |.....+.|+.++|..+..+.+....|..+|..+.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 140 ~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~ 209 (277)
T 2rhc_B 140 QVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELAR----TGITVNAVCPGFVETP 209 (277)
T ss_dssp HHHTTTCHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEEECSBCSH
T ss_pred HHhChhhHhhcCCeEEEEECccccccCCCCCccHHHHHHHHHHHHHHHHHHHHH----hCcEEEEEecCcCcCc
Confidence 33555 55555689999999888877888888999999999888887766532 3678888888876543
No 315
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*
Probab=56.47 E-value=6.8 Score=34.28 Aligned_cols=70 Identities=23% Similarity=0.214 Sum_probs=52.1
Q ss_pred HHHhcchhhHhhcCceEeeccccccccCCCCc-cccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL-VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 124 L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l-~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.....|.|.. .|.|+.++|..+..+.+.. ..|+.+|.++.++.+.+..++.. -.+++++.+.|+++.++
T Consensus 160 l~~~~~~~m~~--~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~---~~gIrvn~v~PG~v~T~ 230 (315)
T 2o2s_A 160 LLQHFGPIMNE--GGSAVTLSYLAAERVVPGYGGGMSSAKAALESDTRTLAWEAGQ---KYGVRVNAISAGPLKSR 230 (315)
T ss_dssp HHHHHSTTEEE--EEEEEEEEEGGGTSCCTTCCTTHHHHHHHHHHHHHHHHHHHHH---HTCCEEEEEEECCCCCH
T ss_pred HHHHHHHHHhc--CCEEEEEecccccccCCCccHHHHHHHHHHHHHHHHHHHHhCc---ccCeEEEEEecccccch
Confidence 33334555533 3789999888887777776 48999999999999988887742 13789999999887664
No 316
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2
Probab=54.88 E-value=8.4 Score=31.96 Aligned_cols=69 Identities=30% Similarity=0.455 Sum_probs=51.3
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.+.....+.++.++|..+..+.+....|..+|..+..+...+..++. -.+.+++.+.|+.+.++.
T Consensus 127 ~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 195 (244)
T 2bd0_A 127 ALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYAR----KCNVRITDVQPGAVYTPM 195 (244)
T ss_dssp HHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHT----TTTEEEEEEEECCBCSTT
T ss_pred HHHHHHHhCCCCEEEEEecchhcCCCCCCchhHHHHHHHHHHHHHHHHHhh----ccCcEEEEEECCCccchh
Confidence 335555555678999999988888888778899999988888777665543 346788888888776543
No 317
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A
Probab=53.94 E-value=4.9 Score=37.49 Aligned_cols=67 Identities=31% Similarity=0.484 Sum_probs=52.4
Q ss_pred chhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.|.+.....+.|+.++|..+..+.+....|..+|..+.++.+.+..++.. .+++++.+.|+++.+..
T Consensus 331 ~~~~~~~~~g~iV~iSS~a~~~g~~g~~~YaasKaal~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~ 397 (454)
T 3u0b_A 331 VGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLAD----KGITINAVAPGFIETKM 397 (454)
T ss_dssp HHTTSSCTTCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECSBCC--
T ss_pred HHhhhhcCCCEEEEEeChHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEEcCcccChh
Confidence 34444446689999999999888888899999999999988888776643 47889999999887654
No 318
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=53.80 E-value=7.9 Score=34.55 Aligned_cols=70 Identities=19% Similarity=0.379 Sum_probs=52.8
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccC--CCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc-ccc
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM-VDT 197 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~--lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~-~~~ 197 (352)
.+.....|.+.....+.|+.++|..+..+ .+....|+.+|..+..+...+..++. .+++++.+.|+. +.+
T Consensus 166 ~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~~~~~~Y~aSKaal~~l~~~la~e~~-----~gIrvn~v~PG~~i~T 238 (346)
T 3kvo_A 166 LASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFK-----GEIAVNALWPKTAIHT 238 (346)
T ss_dssp HHHHHHHHHHTTCSSCEEEEECCCCCCCGGGTSSSHHHHHHHHHHHHHHHHHHHHTT-----TTCEEEEEECSBCBCC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-----CCcEEEEEeCCCcccc
Confidence 33344467777667789999998887766 66777899999999998888776653 478999999984 544
No 319
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=53.76 E-value=5.7 Score=33.64 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=46.4
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.++.++|..+..+.+....|..+|.++.++.+.+..++.. .+.+++.+.|+.+.+..
T Consensus 146 ~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~ 204 (271)
T 3ek2_A 146 DASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGA----KGVRVNAISAGPIKTLA 204 (271)
T ss_dssp EEEEEEEECGGGTSBCTTTTHHHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECCC----
T ss_pred CceEEEEeccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCcEEEEEecCcccchh
Confidence 578899999888888888889999999999998888777643 46889999998876643
No 320
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=52.85 E-value=5.4 Score=33.00 Aligned_cols=67 Identities=27% Similarity=0.421 Sum_probs=48.6
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..|.+..+ .+.++.++|..+..+.+....|..+|.++..+...+..++. -.+.+++.+.|+.+.++.
T Consensus 114 ~~~~~~~~-~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~----~~gi~v~~v~PG~v~t~~ 180 (230)
T 3guy_A 114 LVKRYKDQ-PVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELK----GKPMKIIAVYPGGMATEF 180 (230)
T ss_dssp HHHHHTTS-CCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTT----TSSCEEEEEEECCC----
T ss_pred HHHHHHhC-CCeEEEEeecccCCCCCCCchhHHHHHHHHHHHHHHHHHHH----hcCeEEEEEECCcccChH
Confidence 34444433 34888899988888888888999999999998888776653 346888899998876654
No 321
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=52.73 E-value=7.9 Score=32.86 Aligned_cols=68 Identities=28% Similarity=0.381 Sum_probs=51.1
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
.....|.+.....+.|+.++|..+..+.+....|..+|..+.++.+.+..++.. . ++++.+.|+++.+
T Consensus 113 ~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~----~-i~vn~v~PG~v~t 180 (264)
T 2dtx_A 113 SKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP----L-LRCNAVCPATIDT 180 (264)
T ss_dssp HHHHHHHHTTSSSCEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHTT----T-SEEEEEEECSBCS
T ss_pred HHHHHHHHHHcCCcEEEEECCchhccCCCCchhHHHHHHHHHHHHHHHHHHhcC----C-cEEEEEEeCCCcC
Confidence 333456665556689999999888888888888999999999888887766532 2 6778888887654
No 322
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=52.37 E-value=2.8 Score=35.60 Aligned_cols=69 Identities=33% Similarity=0.506 Sum_probs=49.8
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.|.....+.|+.++|..+..+.+....|..+|..+..+.+.+..++. -.+.+++.+.|+++.++.
T Consensus 128 ~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~----~~gi~vn~v~PG~v~T~~ 196 (253)
T 2nm0_A 128 RANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELG----SRNITFNVVAPGFVDTDM 196 (253)
T ss_dssp HHHHHHHHHTCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC----SSSEEEEEEEECSBCC--
T ss_pred HHHHHHHhcCCCEEEEECchhhCCCCCCcHHHHHHHHHHHHHHHHHHHHhh----hcCeEEEEEEeCcCcCcc
Confidence 345666666678999999887766666667788899888888877766553 346888889998776543
No 323
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=52.17 E-value=6.4 Score=32.35 Aligned_cols=57 Identities=26% Similarity=0.224 Sum_probs=47.3
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.|+.++|..+..+.+....|..+|..+.++.+.+..++.. .+++.+.|+.+.++.
T Consensus 109 ~g~iv~~sS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~------i~vn~v~PG~v~t~~ 165 (223)
T 3uce_A 109 GGSITLTSGMLSRKVVANTYVKAAINAAIEATTKVLAKELAP------IRVNAISPGLTKTEA 165 (223)
T ss_dssp EEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTT------SEEEEEEECSBCSGG
T ss_pred CeEEEEecchhhccCCCCchHHHHHHHHHHHHHHHHHHhhcC------cEEEEEEeCCCcchh
Confidence 478999999888888888889999999999998888776642 788888998876654
No 324
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=51.84 E-value=10 Score=31.25 Aligned_cols=67 Identities=33% Similarity=0.550 Sum_probs=46.5
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..|.+.....+.++.++|..+..+.+....|..+|..+..+.+.+..++. -.+.+++.+.|+.+.+.
T Consensus 120 ~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~ 186 (234)
T 2ehd_A 120 AVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLR----EANVRVVNVLPGSVDTG 186 (234)
T ss_dssp HHHHHHTTTCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEECC-----
T ss_pred HHHHHHhCCCcEEEEECCchhcCCCCCCchhhHHHHHHHHHHHHHHHHHh----hcCcEEEEEEeCCCcCC
Confidence 34555555568899999888877777777889999888888777766553 34678888888877554
No 325
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}
Probab=51.13 E-value=5.3 Score=38.86 Aligned_cols=69 Identities=29% Similarity=0.348 Sum_probs=54.1
Q ss_pred HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV 195 (352)
Q Consensus 123 ~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~ 195 (352)
.+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+..
T Consensus 139 ~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~~~~~Y~asKaal~~lt~~la~e~~~----~gI~vn~v~Pg~~ 207 (613)
T 3oml_A 139 KCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGAR----NNVLCNVIVPTAA 207 (613)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCChHHHHHHHHHHHHHHHHHHHhCc----cCeEEEEEECCCC
Confidence 33444467777777899999999998888888889999999999999888877643 3678888888753
No 326
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=50.21 E-value=12 Score=31.02 Aligned_cols=68 Identities=34% Similarity=0.499 Sum_probs=50.4
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|.+.....+.++.++|..+..+.+....|..+|..+..+...+..++. -.+.+++.+.|+.+.++
T Consensus 124 ~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~----~~gi~v~~v~Pg~v~t~ 191 (250)
T 2cfc_A 124 AVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYA----GSGIRCNAVCPGMIETP 191 (250)
T ss_dssp HHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBCST
T ss_pred HHHHHHHhCCCCEEEEECChhhccCCCCchhHHHHHHHHHHHHHHHHHHhc----ccCeEEEEEEeCcCccC
Confidence 335556555668999999888887777778899999988888877766553 23678888888876554
No 327
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Probab=50.04 E-value=3.2 Score=38.24 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=49.3
Q ss_pred CceEeeccccccccCCCCc--cccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270 137 RGHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC 200 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l--~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l 200 (352)
.|.|+.++|..+..+.|.. ..|+.+|.++.++.+.++.++... +++++.+.|+.+.++..
T Consensus 238 gG~IVniSSi~g~~~~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~----GIRVNaVaPG~i~T~~~ 299 (422)
T 3s8m_A 238 GARSVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRLNARLAKH----GGGANVAVLKSVVTQAS 299 (422)
T ss_dssp EEEEEEEEECCCGGGHHHHTSHHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECCCCCTTG
T ss_pred CCEEEEEeCchhhccCCCccchHHHHHHHHHHHHHHHHHHHhCcc----CEEEEEEEcCCCcChhh
Confidence 5789999988877666654 678999999999999998888653 78999999998877643
No 328
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=49.63 E-value=13 Score=31.84 Aligned_cols=75 Identities=31% Similarity=0.431 Sum_probs=52.6
Q ss_pred HHHHHhcchhhHhhcC-ceEeeccccccccCC-C-CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 122 QIILETFLPDMMEKNR-GHIVGISSMAGIVGL-P-NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~-g~i~~iss~~~l~~l-p-~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..+.....|.+..+.. +.++.++|..+.... + ....|..+|.++.++.+.+..++.. .+++++.+.|+++.++
T Consensus 145 ~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gIrvn~v~PG~v~T~ 220 (276)
T 3r1i_A 145 FLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAP----HQIRVNSVSPGYIRTE 220 (276)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCST
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECchHhcccCCCCCcchHHHHHHHHHHHHHHHHHHHhh----cCcEEEEEeeCCCcCC
Confidence 3333444566665543 789988887765443 2 4567999999999998888777643 3788999999988765
Q ss_pred Cc
Q psy5270 199 LC 200 (352)
Q Consensus 199 ~l 200 (352)
..
T Consensus 221 ~~ 222 (276)
T 3r1i_A 221 LV 222 (276)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 329
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=49.57 E-value=6.7 Score=33.92 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=48.7
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.|+.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 175 ~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~~ 233 (291)
T 3ijr_A 175 GDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQ----KGIRVNGVAPGPIWTPL 233 (291)
T ss_dssp TCEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBCSTH
T ss_pred CCEEEEEechHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh----cCEEEEEEeeCCCcCCc
Confidence 578999999888888888889999999999998888777643 37888999998876653
No 330
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=49.42 E-value=7.1 Score=33.30 Aligned_cols=66 Identities=32% Similarity=0.448 Sum_probs=50.0
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..|.+... .+.++.++|..+..+.+....|+.+|..+.++.+.+..++. -.+.+++.+.|+.+.++
T Consensus 125 ~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~----~~gi~vn~v~Pg~v~t~ 190 (270)
T 1yde_A 125 ALPYLRKS-QGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDES----PYGVRVNCISPGNIWTP 190 (270)
T ss_dssp HHHHHHHH-TCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTCEEEEEEECSBCCH
T ss_pred HHHHHHHC-CCEEEEEcCccccCCCCCCcccHHHHHHHHHHHHHHHHHhh----hhCcEEEEEEeCccccc
Confidence 34555443 58999999887777778888899999999998888776653 24688888889877554
No 331
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=49.35 E-value=13 Score=31.09 Aligned_cols=69 Identities=29% Similarity=0.336 Sum_probs=52.4
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|.+.... +.++.++|..+..+.+....|+.+|..+.++.+.+..++... -.+.+++.+.|+.+.++
T Consensus 121 ~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~--~~gi~v~~v~Pg~v~t~ 189 (253)
T 1hxh_A 121 QGIAAMKETG-GSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQ--GYAIRVNSIHPDGIYTP 189 (253)
T ss_dssp HHHHHHTTTC-EEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEESEECCH
T ss_pred HHHHHHHHcC-CEEEEEcchhhcCCCCCCccHHHHHHHHHHHHHHHHHHhhhc--CCCeEEEEEEeCCccCc
Confidence 3455555544 899999998888888888889999999999988887776542 12678888888877554
No 332
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=49.32 E-value=11 Score=31.79 Aligned_cols=71 Identities=27% Similarity=0.347 Sum_probs=51.7
Q ss_pred HHHhcchhhHhhcCceEeeccccccccCC--CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 124 ILETFLPDMMEKNRGHIVGISSMAGIVGL--PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 124 L~l~~~p~~~~~~~g~i~~iss~~~l~~l--p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
+.....|.+.....+.++.++|..+..+. +....|..+|.++..+...+..++.. ..+++.+.|+++.+..
T Consensus 139 l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~-----~i~v~~v~PG~v~t~~ 211 (267)
T 3gdg_A 139 CAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRD-----FARVNSISPGYIDTGL 211 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCGGGTSCCSSSCCHHHHHHHHHHHHHHHHHHHHTTT-----TCEEEEEEECCEECSC
T ss_pred HHHHHHHHHHHcCCceEEEEccccccccCCCCCCCcchHHHHHHHHHHHHHHHHhcc-----CcEEEEEECCccccch
Confidence 33344667777777899999887776554 35677999999999888887766532 2688888998876654
No 333
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=49.18 E-value=10 Score=32.35 Aligned_cols=59 Identities=32% Similarity=0.434 Sum_probs=45.9
Q ss_pred CceEeecccccccc-CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIV-GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~-~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.|+.++|..+.. +.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.++.
T Consensus 158 ~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gIrvn~v~PG~v~T~~ 217 (271)
T 3v2g_A 158 GGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGP----RGITVNIVHPGSTDTDM 217 (271)
T ss_dssp TCEEEEECCGGGTCCCSTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBCSSS
T ss_pred CCEEEEEeChhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhh----hCeEEEEEecCCCcCCc
Confidence 57888887755543 3677788999999999998888777643 37889999999887654
No 334
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=48.80 E-value=7.4 Score=33.19 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=47.3
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.|+.++|..+..+.+....|+.+|..+..+...+..++.. .+++++.+.|+.+.++.
T Consensus 137 ~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~ 195 (275)
T 2pd4_A 137 GASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGK----HHIRVNALSAGPIRTLA 195 (275)
T ss_dssp EEEEEEEECGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECCCCCTT
T ss_pred CCEEEEEecchhcCCCCCchhhHHHHHHHHHHHHHHHHHhhh----cCeEEEEEeeCccccch
Confidence 478999998888777787788999999999988888776643 46888999998876643
No 335
>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*
Probab=48.34 E-value=14 Score=34.04 Aligned_cols=60 Identities=8% Similarity=-0.065 Sum_probs=50.3
Q ss_pred cCceEeeccccccccCCCCc--cccccchhhhhhhhHHhHHHHHH-HHhcCCceeecccCcccccCC
Q psy5270 136 NRGHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEELRE-DARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 136 ~~g~i~~iss~~~l~~lp~l--~~~~~s~~~l~~~~~~l~~~l~~-~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.++.++|..+..+.|.. ..|+.+|.++.++.+.++.++.. . +++++.+.|+.+.+..
T Consensus 236 ~gg~IV~iSSi~~~~~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~----GIrVN~V~PG~v~T~~ 298 (418)
T 4eue_A 236 DKATTIAYSYIGSPRTYKIYREGTIGIAKKDLEDKAKLINEKLNRVI----GGRAFVSVNKALVTKA 298 (418)
T ss_dssp EEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHH----SCEEEEEECCCCCCHH
T ss_pred CCcEEEEEeCchhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCcc----CeEEEEEECCcCcChh
Confidence 35789999988887777776 88999999999999999998876 4 7899999999887653
No 336
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=47.95 E-value=9.3 Score=32.34 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=51.3
Q ss_pred HHHHHhcchhhHhhcCceEeeccccccccCCC--CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLP--NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp--~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.....|.|.....+.++.++|.......+ ....|..+|.++.++.+.++.++. -.+++++.+.|+.+.++.
T Consensus 132 ~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~e~~----~~gI~vn~v~PG~v~t~~ 207 (260)
T 3un1_A 132 FHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFS----RSGVRVNAVSPGVIKTPM 207 (260)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTTCCCHHHHHHHHHHHHHHHHHHHHTT----TTTEEEEEEEECCBCCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEEechhhccCCCCCccHHHHHHHHHHHHHHHHHHHHhC----cCCeEEEEEeecCCCCCC
Confidence 33344446777777778999988766543332 335678889988888887776653 247889999998887654
No 337
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=47.93 E-value=8.4 Score=32.41 Aligned_cols=60 Identities=30% Similarity=0.402 Sum_probs=46.5
Q ss_pred cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 136 NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 136 ~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.++.++|..+..+.+....|..+|..+..+...+..++. -.+.+++.+.|+++.++.
T Consensus 148 ~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 207 (265)
T 2o23_A 148 QRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLA----PIGIRVMTIAPGLFGTPL 207 (265)
T ss_dssp CCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCBCCC-
T ss_pred CCcEEEEeCChhhcCCCCCCchhHHHHHHHHHHHHHHHHHHh----hcCcEEEEEEeccccCcc
Confidence 457899999888877778888899999999888877776653 346888888998776643
No 338
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=47.81 E-value=8.2 Score=32.33 Aligned_cols=69 Identities=26% Similarity=0.288 Sum_probs=45.4
Q ss_pred hcchhhHhhcCceEeeccccccc----------------------------cCCCCccccccchhhhhhhhHHhHHHHHH
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGI----------------------------VGLPNLVPYCASKFAVRGLMEALAEELRE 178 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l----------------------------~~lp~l~~~~~s~~~l~~~~~~l~~~l~~ 178 (352)
...|.+.....+.++.++|..+. ...+....|..+|..+..+...+..++..
T Consensus 96 ~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 175 (257)
T 1fjh_A 96 AFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGE 175 (257)
T ss_dssp HHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555556899999887776 23334567888888888888777766643
Q ss_pred HHhcCCceeecccCcccccCC
Q psy5270 179 DARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 179 ~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.+++.+.|+.+.++.
T Consensus 176 ----~gi~v~~v~PG~v~t~~ 192 (257)
T 1fjh_A 176 ----AGVRLNTIAPGATETPL 192 (257)
T ss_dssp ----TTCEEEEEEECC-----
T ss_pred ----cCeEEEEEeeCCCCCcc
Confidence 36888889998876654
No 339
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=46.96 E-value=15 Score=30.42 Aligned_cols=66 Identities=29% Similarity=0.400 Sum_probs=48.9
Q ss_pred chhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+.... .+.++.++|..+..+.+....|..+|..+..+...+..++. -.+.+++.+.|+.+.++
T Consensus 119 ~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~~i~v~~v~Pg~v~t~ 185 (244)
T 3d3w_A 119 ARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELG----PHKIRVNAVNPTVVMTS 185 (244)
T ss_dssp HHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCBTTT
T ss_pred HHHHHhCCCCcEEEEeCchhhccCCCCCchHHHHHHHHHHHHHHHHHHhc----ccCeEEEEEEecccccc
Confidence 45555444 68899999988887778778899999999888877766553 23678888888776543
No 340
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=46.09 E-value=3.7 Score=34.95 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=43.1
Q ss_pred cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 136 NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 136 ~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.++.++|..+..+.+....|+.+|.++.++.+.+..++.. .+++++.+.|+.+.+..
T Consensus 139 ~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~~ 198 (262)
T 3ksu_A 139 PNGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMK----QQISVNAIAPGPMDTSF 198 (262)
T ss_dssp EEEEEEEECCCHHHHHHCCCCC-----CHHHHHHHHHHHHTTT----TTCEEEEEEECCCCTHH
T ss_pred CCCEEEEEechhhccCCCCCchhHHHHHHHHHHHHHHHHHHHH----cCcEEEEEeeCCCcCcc
Confidence 3578999988877777778888999999999998888776643 36889999998876643
No 341
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=44.66 E-value=8.7 Score=32.51 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=46.1
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.++.++|..+..+.+....|+.+|..+..+...+..++. -.+.+++.+.|+.+.++
T Consensus 141 ~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~PG~v~t~ 198 (265)
T 1qsg_A 141 GSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMG----PEGVRVNAISAGPIRTL 198 (265)
T ss_dssp EEEEEEEECGGGTSBCTTTTHHHHHHHHHHHHHHHHHHHHT----TTTEEEEEEEECCCCCT
T ss_pred CCEEEEEcchhhccCCCCchHHHHHHHHHHHHHHHHHHHhh----hcCeEEEEEEeCCCccc
Confidence 47899999888877777778899999999988887776653 24688889999877654
No 342
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=43.87 E-value=18 Score=30.24 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=48.6
Q ss_pred chhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+.... .+.++.++|..+..+.+....|..+|.++..+...+..++. -.+.+++.+.|+.+.++
T Consensus 128 ~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~ 194 (261)
T 1gee_A 128 IKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYA----PKGIRVNNIGPGAINTP 194 (261)
T ss_dssp HHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTCEEEEEEECSBCSG
T ss_pred HHHHHhCCCCCEEEEeCCHHhcCCCCCccHHHHHHHHHHHHHHHHHHHhc----ccCeEEEEEeeCCcCCc
Confidence 45555444 67999999888877777778899999988888877766553 23678888888776553
No 343
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=42.92 E-value=18 Score=30.45 Aligned_cols=68 Identities=28% Similarity=0.362 Sum_probs=49.4
Q ss_pred cchhhHhhcCceEeeccccccccCCC-CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLP-NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp-~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..|.+.....+.++.++|..+..+.+ ....|..+|..+..+...+..++. -.+.+++.+.|+.+.++.
T Consensus 136 ~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 204 (278)
T 2bgk_A 136 AARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELG----EYGIRVNCVSPYIVASPL 204 (278)
T ss_dssp HHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEESCCSCCC
T ss_pred HHHHHhhcCCCeEEEEeeccccCCCCCCCcchHHHHHHHHHHHHHHHHHHh----hcCcEEEEEEeceecchh
Confidence 34555555678999999888877766 566788999888888777766553 246788888888775543
No 344
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=42.52 E-value=12 Score=30.96 Aligned_cols=67 Identities=27% Similarity=0.415 Sum_probs=49.7
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..|.+.....+.++.++|..+..+.+....|..+|..+..+.+.+..++. -.+.+++.+.|+.+.++
T Consensus 121 ~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~ 187 (244)
T 1edo_A 121 ATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGA----SRNINVNVVCPGFIASD 187 (244)
T ss_dssp HHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHH----TTTEEEEEEEECSBCSH
T ss_pred HHHHHHhcCCCEEEEECChhhcCCCCCCccchhhHHHHHHHHHHHHHHhh----hcCCEEEEEeeCccccc
Confidence 34555555678999999887777777778899999988888877766653 34678888888776543
No 345
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=41.90 E-value=8 Score=32.68 Aligned_cols=66 Identities=39% Similarity=0.508 Sum_probs=49.1
Q ss_pred hcchhhHhhcCceEeeccccccc-cCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l-~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
...|.+.. .+.|+.++|..+. .+.+....|+.+|.++.++.+.+..++.. .++++.+.|+.+.++.
T Consensus 128 ~~~~~~~~--~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~-----~I~vn~v~PG~v~T~~ 194 (259)
T 3edm_A 128 TALPKMAK--GGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGP-----KIRVNAVCPGMISTTF 194 (259)
T ss_dssp HHGGGEEE--EEEEEEECCHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECCBCC--
T ss_pred HHHHHHhc--CCEEEEEcCHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHCC-----CCEEEEEEECCCcCcc
Confidence 33454433 5789999988877 67788888999999999998888777632 2788899998876654
No 346
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=41.84 E-value=14 Score=30.97 Aligned_cols=67 Identities=30% Similarity=0.347 Sum_probs=40.7
Q ss_pred chhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.|.+.....+.++.++|..+..+.+....|..+|..+..+...+..++. -.+.+++.+.|+.+.++.
T Consensus 135 ~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 201 (266)
T 1xq1_A 135 HPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWA----SDGIRANAVAPAVIATPL 201 (266)
T ss_dssp HHHHHHHSSCEEEEEC----------CCHHHHHHHHHHHHHHHHHHHHG----GGTCEEEEEECCSCC---
T ss_pred HHHHHhcCCcEEEEEccchhccCCCCCchHHHHHHHHHHHHHHHHHHHh----HhCcEEEEEeeCCCccch
Confidence 4555555668999999888777777777899999988888877766553 246788888888776543
No 347
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=41.73 E-value=9.3 Score=32.28 Aligned_cols=58 Identities=24% Similarity=0.179 Sum_probs=45.8
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.++.++|..+..+.+....|..+|..+..+.+.+..++.. .+.+++.+.|+.+.++
T Consensus 139 ~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~Pg~v~t~ 196 (261)
T 2wyu_A 139 GGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGP----KGVRVNAISAGPVRTV 196 (261)
T ss_dssp EEEEEEEECGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECCCCCT
T ss_pred CCEEEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHHHhh----hCcEEEEEeeCCCcCc
Confidence 478999988888777777778999999999888887766542 3688888999877654
No 348
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=41.40 E-value=6.4 Score=33.55 Aligned_cols=59 Identities=27% Similarity=0.346 Sum_probs=46.8
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.|.|+.++|..+..+.+....|+.+|.++.++.+.+..++. -.+++++.+.|+.+.++.
T Consensus 154 ~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~----~~gI~vn~v~PG~v~T~~ 212 (267)
T 3u5t_A 154 GGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELR----GRDITVNAVAPGPTATDL 212 (267)
T ss_dssp EEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHTT----TSCCEEEEEEECCBC---
T ss_pred CCeEEEEeChhhccCCCCchHHHHHHHHHHHHHHHHHHHhh----hhCCEEEEEEECCCcCcc
Confidence 47899999888888888888999999999999888876654 347899999999887654
No 349
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=40.19 E-value=14 Score=30.73 Aligned_cols=68 Identities=28% Similarity=0.340 Sum_probs=37.9
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.+.....+.++.++|..+. +....|..+|.++..+.+.+..++. -.+.+++.+.|+.+.++.
T Consensus 128 ~~~~~~~~~~~~~g~iv~isS~~~~---~~~~~Y~asK~a~~~~~~~la~e~~----~~gi~v~~v~PG~v~t~~ 195 (253)
T 3qiv_A 128 TRAVYKKMTKRGGGAIVNQSSTAAW---LYSNYYGLAKVGINGLTQQLSRELG----GRNIRINAIAPGPIDTEA 195 (253)
T ss_dssp HHHHHHHHHHHTCEEEEEECC--------------CCHHHHHHHHHHHHHHTT----TTTEEEEEEEC-------
T ss_pred HHHHHHHHHhcCCCEEEEECCcccc---CCCchhHHHHHHHHHHHHHHHHHHh----hcCeEEEEEEecCCcccc
Confidence 3344666777777889998887665 4445689999999888887776653 346888899998876643
No 350
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=39.94 E-value=8.9 Score=33.64 Aligned_cols=56 Identities=29% Similarity=0.305 Sum_probs=46.2
Q ss_pred ceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 138 g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
|.|+.++|..+..+.+....|+.+|.++.++.+.++.++.. .+++++.+.|+ +.+.
T Consensus 172 g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~----~gI~vn~v~PG-~~t~ 227 (322)
T 3qlj_A 172 GRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGR----YGVTVNAIAPS-ARTR 227 (322)
T ss_dssp EEEEEECCHHHHHCBTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEEC-TTSC
T ss_pred cEEEEEcCHHHccCCCCCccHHHHHHHHHHHHHHHHHHhcc----cCcEEEEecCC-CCCc
Confidence 78999999888888888889999999999998888877643 36888899997 5443
No 351
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=39.55 E-value=15 Score=31.38 Aligned_cols=66 Identities=30% Similarity=0.484 Sum_probs=49.0
Q ss_pred chhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+.....+.++.++|..+..+.+....|..+|.++..+...+..++. -.+.+++.+.|+.+.++
T Consensus 164 ~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~ 229 (285)
T 2c07_A 164 SKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELA----SRNITVNAIAPGFISSD 229 (285)
T ss_dssp HHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBCC-
T ss_pred HHHHHhCCCCEEEEECChhhccCCCCCchHHHHHHHHHHHHHHHHHHHH----HhCcEEEEEEeCcEecC
Confidence 4555555568899999888777778778899999988888877766653 23678888888877554
No 352
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=39.29 E-value=17 Score=30.01 Aligned_cols=66 Identities=29% Similarity=0.483 Sum_probs=41.1
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
..|.+.....+.++.++|..+..+.+....|..+|..+..+...+..++. ..+.+++.+.|+.+.+
T Consensus 125 ~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t 190 (247)
T 2hq1_A 125 VSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFA----AKGIYCNAVAPGIIKT 190 (247)
T ss_dssp HHHHHHHHTCEEEEEECC---------CHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBCC
T ss_pred HHHHHHhcCCcEEEEEcChhhccCCCCCcHhHHHHHHHHHHHHHHHHHHH----HcCcEEEEEEEEEEec
Confidence 34555555568899998877776777777889999888888877766653 2357788888876654
No 353
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=39.21 E-value=18 Score=30.84 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=45.0
Q ss_pred cCceEeeccccccccCCCC-ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 136 NRGHIVGISSMAGIVGLPN-LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 136 ~~g~i~~iss~~~l~~lp~-l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..+.|+.++|..+..+.+. ...|+.+|..+.++.+.+..++.. .+++++.+.|+.+.++
T Consensus 155 ~~g~iv~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~ 214 (283)
T 1g0o_A 155 IGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMAD----KKITVNVVAPGGIKTD 214 (283)
T ss_dssp TTCEEEEECCGGGTCSSCSSCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECCBSSH
T ss_pred cCCeEEEEechhhccCCCCCCcchHHHHHHHHHHHHHHHHHhcc----cCeEEEEEecCcccch
Confidence 4578999998877766553 678999999999888887766542 3688888889877654
No 354
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Probab=38.29 E-value=16 Score=33.29 Aligned_cols=59 Identities=10% Similarity=-0.067 Sum_probs=49.2
Q ss_pred CceEeeccccccccCCCCc--cccccchhhhhhhhHHhHHHHHHHHhcC-CceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEELREDARNS-KIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l--~~~~~s~~~l~~~~~~l~~~l~~~~~~~-~n~~~g~~P~~~~~~~ 199 (352)
.|.|+.++|..+..+.|.. ..|+.+|.++.++.+.++.++.. . +++.+.+.|+.+.+..
T Consensus 223 gG~IVniSSi~~~~~~p~~~~~aY~AaKaal~~ltrsLA~Ela~----~~GIRVNaVaPG~i~T~~ 284 (405)
T 3zu3_A 223 GAQTTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLAIRESLAA----HGGGDARVSVLKAVVSQA 284 (405)
T ss_dssp EEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHHHHHHHT----TTSCEEEEEECCCCCCHH
T ss_pred CcEEEEEeCchhhCcCCCccchHHHHHHHHHHHHHHHHHHHhCc----ccCeEEEEEEeCCCcCch
Confidence 4889999998888777766 78999999999999999888754 3 6899999999887653
No 355
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=37.58 E-value=36 Score=27.82 Aligned_cols=68 Identities=25% Similarity=0.377 Sum_probs=48.7
Q ss_pred HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.....|.| ....+.++.++|..+....+....|+.+|..+.++.+.+. ....+.+++.+.|+.+.+..
T Consensus 119 ~~~~~~~~-~~~~~~ii~~sS~~~~~~~~~~~~Y~~sKaa~~~~~~~l~------~~~~~i~v~~v~PG~v~T~~ 186 (235)
T 3l77_A 119 LKAFLDSL-KRTGGLALVTTSDVSARLIPYGGGYVSTKWAARALVRTFQ------IENPDVRFFELRPGAVDTYF 186 (235)
T ss_dssp HHHHHHHH-HHHTCEEEEECCGGGSSCCTTCHHHHHHHHHHHHHHHHHH------HHCTTSEEEEEEECSBSSST
T ss_pred HHHHHHHH-hhcCCcEEEEecchhcccCCCcchHHHHHHHHHHHHHHHh------hcCCCeEEEEEeCCcccccc
Confidence 33345555 4456778888877777777877889999998888877661 12457899999999887654
No 356
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=37.46 E-value=15 Score=31.60 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=46.4
Q ss_pred hcchhhHhhcCceEeeccccccccCC-------------------------------------------CCccccccchh
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGL-------------------------------------------PNLVPYCASKF 163 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~l-------------------------------------------p~l~~~~~s~~ 163 (352)
...|.+.....+.|+.++|..+..+. +....|..+|.
T Consensus 162 ~~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~ 241 (311)
T 3o26_A 162 VLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKA 241 (311)
T ss_dssp HHHHHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHH
T ss_pred HhhHhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHH
Confidence 33566655667899999887664332 23356888888
Q ss_pred hhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 164 AVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 164 ~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
++..+...+..++ ...+++.+.|+++.+..
T Consensus 242 a~~~~~~~la~e~------~~i~v~~v~PG~v~T~~ 271 (311)
T 3o26_A 242 CLNAYTRVLANKI------PKFQVNCVCPGLVKTEM 271 (311)
T ss_dssp HHHHHHHHHHHHC------TTSEEEEECCCSBCSGG
T ss_pred HHHHHHHHHHhhc------CCceEEEecCCceecCC
Confidence 8888877776544 34788899999887654
No 357
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Probab=37.27 E-value=10 Score=33.35 Aligned_cols=65 Identities=29% Similarity=0.360 Sum_probs=49.6
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV 195 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~ 195 (352)
...|.|.....+.|+.++|..+..+.+....|..+|..+..+...+..++. -.+++++.+.|+.+
T Consensus 133 ~~~~~m~~~~~grIV~vsS~~~~~~~~~~~~Y~aSK~a~~~~~~~la~el~----~~gI~vn~v~PG~~ 197 (319)
T 1gz6_A 133 AAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGR----KNNIHCNTIAPNAG 197 (319)
T ss_dssp HHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHTG----GGTEEEEEEEEECC
T ss_pred HHHHHHHHcCCCEEEEECChhhccCCCCCHHHHHHHHHHHHHHHHHHHHhc----ccCEEEEEEeCCCc
Confidence 345666666678999999987777777778899999999888877766553 24688888888764
No 358
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=37.22 E-value=6.3 Score=33.49 Aligned_cols=64 Identities=31% Similarity=0.467 Sum_probs=47.4
Q ss_pred chhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.|.+ .+ .+.++.++|..+. +.+....|..+|..+.++.+.+..++. -.+.+++.+.|+.+.++.
T Consensus 123 ~~~~-~~-~g~iv~isS~~~~-~~~~~~~Y~asK~a~~~~~~~la~e~~----~~gi~v~~v~PG~v~t~~ 186 (263)
T 2a4k_A 123 GEVL-EE-GGSLVLTGSVAGL-GAFGLAHYAAGKLGVVGLARTLALELA----RKGVRVNVLLPGLIQTPM 186 (263)
T ss_dssp HHHC-CT-TCEEEEECCCTTC-CHHHHHHHHHCSSHHHHHHHHHHHHHT----TTTCEEEEEEECSBCCGG
T ss_pred HHHH-hc-CCEEEEEecchhc-CCCCcHHHHHHHHHHHHHHHHHHHHhh----hhCcEEEEEEeCcCcCch
Confidence 4545 33 6899999988777 556667889999999888887776653 346888889998776543
No 359
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=36.88 E-value=26 Score=29.11 Aligned_cols=66 Identities=30% Similarity=0.394 Sum_probs=46.6
Q ss_pred chhhHhhcCceEeeccccccccCCCCc--cccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l--~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+.....+.++.++|..+..+.+.. ..|..+|..+..+...+..++. -.+.+++.+.|+.+.++
T Consensus 134 ~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~----~~gi~v~~v~pg~v~t~ 201 (260)
T 3awd_A 134 GRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWA----PHGIRANAVAPTYIETT 201 (260)
T ss_dssp HHHHHHHTCEEEEEECCGGGTSCCSSSCCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCBCCT
T ss_pred HHHHhhcCCCEEEEEecchhcccCCCCCccccHHHHHHHHHHHHHHHHHhh----hcCeEEEEEEeeeeccc
Confidence 455555557889988887776665555 6788888888888777766543 23678888888876554
No 360
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=36.74 E-value=16 Score=30.88 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=46.2
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|.+.. .+.|+.+++... .+.+....|+.+|..+.++.+.+..++.. .+++++.+.|+++.++
T Consensus 133 ~~~~~~~~--~g~iv~iss~~~-~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~ 197 (269)
T 2h7i_A 133 ALLPIMNP--GGSIVGMDFDPS-RAMPAYNWMTVAKSALESVNRFVAREAGK----YGVRSNLVAAGPIRTL 197 (269)
T ss_dssp HHGGGEEE--EEEEEEEECCCS-SCCTTTHHHHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECCCCCH
T ss_pred HHHHhhcc--CCeEEEEcCccc-cccCchHHHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEecCcccch
Confidence 33444432 378888877654 45566667889999999988888777643 4788999999877664
No 361
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=36.41 E-value=22 Score=29.44 Aligned_cols=67 Identities=33% Similarity=0.384 Sum_probs=47.2
Q ss_pred cchhhHhhcCceEeeccccccccCCCCc--cccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l--~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..|.+.....+.++.++|..+..+.+.. ..|..+|..+..+...+..++. -.+.+++.+.|+.+.++
T Consensus 127 ~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~----~~gi~v~~v~Pg~v~t~ 195 (254)
T 2wsb_A 127 FGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWA----GRGVRVNALAPGYVATE 195 (254)
T ss_dssp HHHHHHHHTCEEEEEECCGGGTSCCSSSCBHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCBCSH
T ss_pred HHHHHHhcCCcEEEEEecchhccCCCCCcchHHHHHHHHHHHHHHHHHHHHh----hcCeEEEEEEecccCch
Confidence 3455555567889999888777666665 6788889888887777665553 23677888888766543
No 362
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=36.03 E-value=19 Score=30.03 Aligned_cols=67 Identities=34% Similarity=0.475 Sum_probs=49.1
Q ss_pred cchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 128 FLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 128 ~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
..|.+.... .+.++.++|..+..+.+....|..+|..+..+...+..++. -.+.+++.+.|+.+.++
T Consensus 134 ~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~ 201 (264)
T 2pd6_A 134 AAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELG----RHGIRCNSVLPGFIATP 201 (264)
T ss_dssp HHHHHHHHTCCEEEEEECCTHHHHCCTTBHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBCSC
T ss_pred HHHHHHhcCCCceEEEECChhhccCCCCChhhHHHHHHHHHHHHHHHHHhh----hcCeEEEEEeeeccccc
Confidence 345555544 57899999887777777778899999988888777766553 24678888888877554
No 363
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=35.60 E-value=18 Score=29.85 Aligned_cols=68 Identities=29% Similarity=0.474 Sum_probs=48.8
Q ss_pred hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
...|.+.....+.++.++|..+..+.+....|..+|..+..+...+..++. ..+.+++.+.|+.+.++
T Consensus 126 ~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~~i~v~~v~Pg~v~t~ 193 (248)
T 2pnf_A 126 NSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELA----PRNVLVNAVAPGFIETD 193 (248)
T ss_dssp HHCHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBCCG
T ss_pred HHHHHHHhcCCcEEEEEccHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhc----ccCeEEEEEEeceecCc
Confidence 345556555668899998877777777777888999888888777766553 23677778888766543
No 364
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=35.17 E-value=17 Score=30.82 Aligned_cols=60 Identities=37% Similarity=0.531 Sum_probs=44.3
Q ss_pred cCceEeeccccccccCCC-CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 136 NRGHIVGISSMAGIVGLP-NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 136 ~~g~i~~iss~~~l~~lp-~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..+.++.++|..+..+.+ ....|+.+|.++..+...+..++.. .+.+++.+.|+.+.++.
T Consensus 158 ~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~v~~v~PG~v~t~~ 218 (272)
T 4e3z_A 158 QGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAA----EGIRVNAVRPGIIETDL 218 (272)
T ss_dssp CCEEEEEECCTHHHHCCTTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBC---
T ss_pred CCCEEEEEcchHhccCCCCCcchhHHHHHHHHHHHHHHHHHHHH----cCcEEEEEecCCCcCCc
Confidence 357899998887766655 5567999999999888887776643 36888899998876653
No 365
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=34.62 E-value=21 Score=29.49 Aligned_cols=68 Identities=29% Similarity=0.410 Sum_probs=48.8
Q ss_pred chhhHhhcC-ceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~~~~~-g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+..... +.++.++|..+..+.+....|..+|..+..+...+..++.. .-.+.+++.+.|+++.++
T Consensus 125 ~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~~a~e~~~--~~~~i~v~~v~Pg~v~t~ 193 (251)
T 1zk4_A 125 IQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCAL--KDYDVRVNTVHPGYIKTP 193 (251)
T ss_dssp HHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHH--TTCSEEEEEEEECCBCCH
T ss_pred HHHHHhcCCCCEEEEeCCchhccCCCCCccchHHHHHHHHHHHHHHHHhcc--cCCCeEEEEEeeCcCcch
Confidence 444444444 78999998888877788888999999988888777655431 134678888888876554
No 366
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=34.04 E-value=31 Score=28.48 Aligned_cols=65 Identities=31% Similarity=0.376 Sum_probs=47.5
Q ss_pred chhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
.|.+.....+.++.++|.....+.+....|..+|..+..+...+..++. ..+.+++.+.|+.+.+
T Consensus 130 ~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~----~~~i~v~~v~Pg~v~t 194 (255)
T 1fmc_A 130 APEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLG----EKNIRVNGIAPGAILT 194 (255)
T ss_dssp HHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHH----TTTEEEEEEEECSBCS
T ss_pred HHHHHhcCCcEEEEEcchhhcCCCCCCcccHHHHHHHHHHHHHHHHHhh----hcCcEEEEEecccCcc
Confidence 4555555568899998888877777777899999988888777765553 3467778888876654
No 367
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=33.72 E-value=27 Score=28.63 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=39.9
Q ss_pred CceEeeccccccccCC-------CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGL-------PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~l-------p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.++.++|..+..+. +....|..+|..+..+...+..++. -.+.+++.+.|+.+.++.
T Consensus 144 ~~~iv~isS~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 209 (250)
T 1yo6_A 144 RAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLK----DDNVLVVNFCPGWVQTNL 209 (250)
T ss_dssp TCEEEEECCGGGCSTTCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTG----GGTCEEEEEECCCC----
T ss_pred CcEEEEeccCccccCCcccccccCCccHHHHHHHHHHHHHHHHHHHhc----cCCeEEEEEcCCceecCC
Confidence 6789988887776554 3456788888888887777665543 236788888898776543
No 368
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=33.63 E-value=24 Score=29.71 Aligned_cols=66 Identities=35% Similarity=0.569 Sum_probs=47.6
Q ss_pred chhhHhhc---CceEeeccccccccCCCCccccccchhhhhhhhHHhH--HHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMMEKN---RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALA--EELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~~~~---~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~--~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+.... .+.++.++|..+..+.+....|+.+|..+.++.+.+. .++ .-.+.+++.+.|+++.++
T Consensus 121 ~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~~ala~e~----~~~gi~v~~v~Pg~v~t~ 191 (267)
T 2gdz_A 121 LDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANL----MNSGVRLNAICPGFVNTA 191 (267)
T ss_dssp HHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHH----HTCCEEEEEEEESCBSSH
T ss_pred HHHHHhccCCCCCEEEEeCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHh----ccCCcEEEEEecCcCcch
Confidence 44444432 5789999998888777877889999998888877642 232 335788888899877554
No 369
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=33.55 E-value=18 Score=29.74 Aligned_cols=65 Identities=34% Similarity=0.516 Sum_probs=47.4
Q ss_pred chhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
.|.+.....+.++.++|..+..+.+....|..+|..+..+...+..++. -.+.+++.+.|+.+.+
T Consensus 123 ~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t 187 (245)
T 2ph3_A 123 VKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYA----QRGITVNAVAPGFIET 187 (245)
T ss_dssp HHHHHHHTCEEEEEECCTHHHHCCSSBHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBCC
T ss_pred HHHHHhcCCCEEEEEeChhhccCCCCCcchHHHHHHHHHHHHHHHHHHH----HcCeEEEEEEEEeecC
Confidence 4555555568899998887777777777888999888888777766553 2367778888876654
No 370
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=33.26 E-value=7.3 Score=33.33 Aligned_cols=67 Identities=27% Similarity=0.366 Sum_probs=46.9
Q ss_pred cchhhHhhcCceEeeccccccccCC-----------CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGL-----------PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~l-----------p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~ 196 (352)
..|.+ ...+.++.++|..+..+. +....|+.+|..+..+...+..++.. .+++++.+.|+.+.
T Consensus 139 ~~~~~--~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~vn~v~PG~v~ 212 (287)
T 3pxx_A 139 ALPYL--TSGASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAP----QSIRANVIHPTNVN 212 (287)
T ss_dssp HGGGC--CTTCEEEEECCHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEESSBS
T ss_pred HHHHh--hcCcEEEEeccchhcccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhh----cCcEEEEEecCccc
Confidence 34444 335788888886665433 44456888998888888887776643 37899999999887
Q ss_pred cCCc
Q psy5270 197 TGLC 200 (352)
Q Consensus 197 ~~~l 200 (352)
++..
T Consensus 213 T~~~ 216 (287)
T 3pxx_A 213 TDML 216 (287)
T ss_dssp STTT
T ss_pred cccc
Confidence 6543
No 371
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=32.77 E-value=27 Score=28.65 Aligned_cols=65 Identities=40% Similarity=0.544 Sum_probs=46.7
Q ss_pred chhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270 129 LPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197 (352)
Q Consensus 129 ~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~ 197 (352)
.|.+.... .+.++.++|..+..+.+....|..+|.....+...+..++. ..+.+++.+.|+.+.+
T Consensus 119 ~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~~a~~~~----~~gi~v~~v~pg~v~t 184 (244)
T 1cyd_A 119 ARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELG----PHKIRVNSVNPTVVLT 184 (244)
T ss_dssp HHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCBTT
T ss_pred HHHHHhCCCCeEEEEEcchhhcCCCCCcchhHHHHHHHHHHHHHHHHHhh----hcCeEEEEEecCcccC
Confidence 44554444 67899999988887777778899999888888777665543 2367777777776543
No 372
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=32.63 E-value=22 Score=30.06 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=46.4
Q ss_pred chhhHhhcCceEeeccccccccC--CCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~--lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.+.....+.++.++|..+..+ .+....|..+|..+..+...+..++. -.+ +++.+.|+++.+..
T Consensus 156 ~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~~-~v~~v~Pg~v~t~~ 223 (279)
T 3ctm_A 156 GKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWA----PFA-RVNTISPGYIDTDI 223 (279)
T ss_dssp HHHHHHHTCCEEEEECCCTTSCC---CCHHHHHHHHHHHHHHHHHHHHHTT----TTC-EEEEEEECSBSSTT
T ss_pred HHHHHhcCCCeEEEECchHhccCCCCCCcccHHHHHHHHHHHHHHHHHHhc----ccC-CEEEEeccCCcccc
Confidence 45555556689999988777665 56667788899888888777765543 234 88888888776543
No 373
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=29.92 E-value=48 Score=28.08 Aligned_cols=67 Identities=33% Similarity=0.515 Sum_probs=49.8
Q ss_pred chhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+.. ..+.++.++|..+..+.+....|..+|..+.++...+..++.. .-.+.+++.+.|+++.++
T Consensus 149 ~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l~~e~~~--~~~~i~v~~v~Pg~v~t~ 215 (286)
T 1xu9_A 149 LPMLKQ-SNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSV--SRVNVSITLCVLGLIDTE 215 (286)
T ss_dssp HHHHHH-HTCEEEEEEEGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHH--HTCCCEEEEEEECCBCCH
T ss_pred HHHHHH-CCCEEEEECCcccccCCCCccHHHHHHHHHHHHHHHHHHHHhh--cCCCeEEEEeecCccCCh
Confidence 444433 3589999999888888888888999999999888887766532 234678888888877654
No 374
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2
Probab=28.63 E-value=54 Score=27.25 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=42.6
Q ss_pred CceEeeccccccccCCC---CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 137 RGHIVGISSMAGIVGLP---NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp---~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
.+.++.++|..+..+.+ ....|..+|..+..+...+..++. -.+.+++.+.|+++.+..
T Consensus 165 ~~~iv~isS~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~~ 226 (267)
T 1sny_A 165 RAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLY----PQRIMCVSLHPGWVKTDM 226 (267)
T ss_dssp TCEEEEECCGGGCSTTCCSCCCHHHHHHHHHHHHHHHHHHHHHG----GGTCEEEEECCCSBCSTT
T ss_pred CceEEEEecccccccCCCCCCchHHHHHHHHHHHHHHHHHHHhh----cCCcEEEEeCCcceecCC
Confidence 57899988877765542 445688889888888777766553 246888888998876643
No 375
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=27.03 E-value=41 Score=28.41 Aligned_cols=68 Identities=43% Similarity=0.598 Sum_probs=46.3
Q ss_pred chhhHhhc--CceEeeccccccc--cCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMMEKN--RGHIVGISSMAGI--VGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~~~~--~g~i~~iss~~~l--~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+.... .+.++.++|..+. .+.+....|..+|..+..+...+..++.. .-.+.+++.+.|+++.+.
T Consensus 154 l~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~--~~~~i~v~~v~Pg~v~t~ 225 (279)
T 1xg5_A 154 YQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELRE--AQTHIRATCISPGVVETQ 225 (279)
T ss_dssp HHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEEEESCBCSS
T ss_pred HHHHHhcCCCCceEEEEcChhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHhh--cCCCeEEEEEecCcccch
Confidence 45555444 2789999887776 34455567888998888888777766541 134678888888876543
No 376
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.94 E-value=97 Score=21.72 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=21.0
Q ss_pred ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCC
Q psy5270 43 SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYN 81 (352)
Q Consensus 43 ~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N 81 (352)
.|.++++|+.+.+..+ ++.|-. .|.++.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4555555555555432 344433 3666777777766543
No 377
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=26.01 E-value=16 Score=30.99 Aligned_cols=71 Identities=44% Similarity=0.748 Sum_probs=49.3
Q ss_pred cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199 (352)
Q Consensus 128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~ 199 (352)
..|.+.....+.++.++|..+..+.+....|..+|..+..+...+..++... .-.+.+++.+.|+.+.++.
T Consensus 150 ~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~-~~~gi~v~~v~Pg~v~t~~ 220 (272)
T 1yb1_A 150 FLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAAL-QITGVKTTCLCPNFVNTGF 220 (272)
T ss_dssp HHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCTTEEEEEEEETHHHHCS
T ss_pred HHHHHHhcCCCEEEEEechhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeCCcccCCc
Confidence 3455555566889999888777666666778889988888887777665310 1236788888898876654
No 378
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=23.92 E-value=39 Score=28.86 Aligned_cols=65 Identities=26% Similarity=0.309 Sum_probs=46.2
Q ss_pred chhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+.....+.++.+++.. ..+.+....|..+|.++.++.+.+..++. -.+.+++.+.|+.+.++
T Consensus 143 ~~~~~~~~~~~iv~isS~~-~~~~~~~~~Y~~sK~a~~~~~~~la~e~~----~~gi~v~~v~Pg~v~t~ 207 (303)
T 1yxm_A 143 YSSWMKEHGGSIVNIIVPT-KAGFPLAVHSGAARAGVYNLTKSLALEWA----CSGIRINCVAPGVIYSQ 207 (303)
T ss_dssp HHHTHHHHCEEEEEECCCC-TTCCTTCHHHHHHHHHHHHHHHHHHHHTG----GGTEEEEEEEECSBCCT
T ss_pred HHHHHHhcCCeEEEEEeec-ccCCCcchhhHHHHHHHHHHHHHHHHHhc----ccCeEEEEEecCCcccc
Confidence 4444444567888888776 66667777888889888888777766553 23678888888877554
No 379
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=22.48 E-value=13 Score=30.95 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=44.8
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.++.++|..+..+.+....|..+|..+.++.+.+..++.. .-.+.+++.+.|+++.++
T Consensus 126 ~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~--~~~gi~v~~v~PG~v~T~ 185 (241)
T 1dhr_A 126 GGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSG--MPSGAAAIAVLPVTLDTP 185 (241)
T ss_dssp EEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHHHTSTTSS--CCTTCEEEEEEESCEECH
T ss_pred CCEEEEECCHHHccCCCCchHHHHHHHHHHHHHHHHHHHhcc--CCCCeEEEEEecCcccCc
Confidence 478999999888888888888999999888887766544320 023678888888877654
No 380
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=22.24 E-value=39 Score=28.84 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=47.3
Q ss_pred chhhH-hhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 129 LPDMM-EKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 129 ~p~~~-~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.|.+. ....+.++.++|..+..+.+....|..+|.++..+...+..++. -.+.+++.+.|+.+.++
T Consensus 147 ~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~----~~gi~v~~v~Pg~v~t~ 213 (302)
T 1w6u_A 147 GKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWG----KYGMRFNVIQPGPIKTK 213 (302)
T ss_dssp HHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECCBCC-
T ss_pred HHHHHHhcCCCEEEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHhh----hcCcEEEEEeeccCCCc
Confidence 44444 23457888888887777777778899999988888877766553 34678888888876543
No 381
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=22.16 E-value=36 Score=27.75 Aligned_cols=57 Identities=33% Similarity=0.347 Sum_probs=43.4
Q ss_pred ceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 138 g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.++.++|..+..+.+....|..+|..+..+...+..++. -.+.+++.+.|+.+.++
T Consensus 128 ~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~----~~gi~v~~v~Pg~v~t~ 184 (242)
T 1uay_A 128 GVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELA----GWGIRVVTVAPGLFDTP 184 (242)
T ss_dssp EEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSCSSH
T ss_pred eEEEEeCChhhccCCCCCchhhHHHHHHHHHHHHHHHHHh----hcCcEEEEEEeccCcch
Confidence 3889898888887777778899999988888777766553 23678888888776543
No 382
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=21.23 E-value=18 Score=29.82 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=44.6
Q ss_pred CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
.+.++.++|..+..+.+....|..+|..+..+.+.+..++.. .-.+.+++.+.|+++.++
T Consensus 122 ~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~--~~~gi~v~~v~Pg~v~t~ 181 (236)
T 1ooe_A 122 GGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSG--LPDNSAVLTIMPVTLDTP 181 (236)
T ss_dssp EEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHHHHSTTSS--CCTTCEEEEEEESCBCCH
T ss_pred CCEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHHHHHhcc--cCCCeEEEEEecCcccCc
Confidence 478999999888888888888999999888887776654320 023578888888877554
No 383
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=20.15 E-value=37 Score=28.03 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=42.3
Q ss_pred ceEeecccccccc-CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270 138 GHIVGISSMAGIV-GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198 (352)
Q Consensus 138 g~i~~iss~~~l~-~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~ 198 (352)
+.++.++|..+.. +.+....|..+|..+..+...+..++. -.+.+++.+.|+.+.++
T Consensus 143 ~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~e~~----~~gi~v~~v~Pg~v~t~ 200 (258)
T 3afn_B 143 SAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHT----KDGVRFNIVSPGTVDTA 200 (258)
T ss_dssp EEEEEECCTHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHHG----GGTEEEEEEEECSBSSG
T ss_pred cEEEEecchhhccCCCCCchHHHHHHHHHHHHHHHHHHhhc----ccCeEEEEEeCCCcccc
Confidence 7888888877766 667777889999888888777665543 33678888888877554
Done!