RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5270
(352 letters)
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6*
3m9s_6*
Length = 181
Score = 147 bits (374), Expect = 1e-43
Identities = 36/72 (50%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
M +P+WVISMG+CA+ GG ++ +Y++V+ D ++PVD+YVPGCPP EAL+Y ++QLQKK
Sbjct: 99 MPDPKWVISMGACASSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKK 157
Query: 340 VKRMKILQSWYR 351
V+ + R
Sbjct: 158 VRGQAYNERGER 169
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 130 bits (330), Expect = 3e-37
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 2/119 (1%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+++ + +L + + L L ++ L ++ LP+ L L+ L
Sbjct: 7 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK 66
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
G P L Y L L L L + L A +G L
Sbjct: 67 AAVGELPEKSKLQEIYQELT--RLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSK 123
Score = 116 bits (292), Expect = 1e-31
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 2/119 (1%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+++ + +L + + L L ++ L ++ LP+ L L+ L
Sbjct: 30 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK 89
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
G P L Y L L L L + L A +G L +
Sbjct: 90 AAVGELPEKSKLQEIYQEL--TELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSK 146
Score = 112 bits (284), Expect = 2e-30
Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 2/112 (1%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
+ +L + + L L ++ L ++ LP+ L L+ L G
Sbjct: 57 EIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVG 116
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
P L Y L L L + L L +
Sbjct: 117 ELPEKSKLQEIYQEL--TQLKAAVGELPDQSKQQQIYQELTDLKTAFERLGH 166
Score = 99.8 bits (250), Expect = 2e-25
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 2/101 (1%)
Query: 22 ANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81
L L ++ L ++ LP+ L L+ L G P L Y
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
L L L L + L A +G L
Sbjct: 61 EL--TRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKS 99
Score = 73.3 bits (181), Expect = 8e-16
Identities = 10/64 (15%), Positives = 22/64 (34%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+++ + +L E+ + L L ++ L ++ LP L+ L
Sbjct: 99 SKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLK 158
Query: 65 RGFG 68
F
Sbjct: 159 TAFE 162
Score = 65.2 bits (160), Expect = 6e-13
Identities = 14/72 (19%), Positives = 17/72 (23%), Gaps = 8/72 (11%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
L+ L G P L Y L L L L + L
Sbjct: 60 QELTRLKAAVGELPEKS------KLQEIYQELT--RLKAAVGELPEKSKLQEIYQELTEL 111
Query: 268 PAEIGNLKNLQI 279
A +G L
Sbjct: 112 KAAVGELPEKSK 123
Score = 55.9 bits (136), Expect = 8e-10
Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 8/72 (11%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
L+ L G P + L Y L L L L + L
Sbjct: 83 QELTRLKAAVGELPEK------SKLQEIYQEL--TELKAAVGELPEKSKLQEIYQELTQL 134
Query: 268 PAEIGNLKNLQI 279
A +G L +
Sbjct: 135 KAAVGELPDQSK 146
Score = 55.5 bits (135), Expect = 1e-09
Identities = 14/71 (19%), Positives = 18/71 (25%), Gaps = 8/71 (11%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
L+ L G P + L Y L L L L + L
Sbjct: 14 QELTRLKAAVGELPEK------SKLQEIYQEL--TRLKAAVGELPEKSKLQEIYQELTRL 65
Query: 268 PAEIGNLKNLQ 278
A +G L
Sbjct: 66 KAAVGELPEKS 76
Score = 51.3 bits (124), Expect = 4e-08
Identities = 11/69 (15%), Positives = 15/69 (21%), Gaps = 8/69 (11%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
L+ L G P + L Y L L L + L
Sbjct: 106 QELTELKAAVGELPEK------SKLQEIYQEL--TQLKAAVGELPDQSKQQQIYQELTDL 157
Query: 268 PAEIGNLKN 276
L +
Sbjct: 158 KTAFERLGH 166
Score = 48.2 bits (116), Expect = 4e-07
Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+ L Y L L L L + L A +G L
Sbjct: 7 SKLQEIYQEL--TRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKS 53
Score = 36.7 bits (86), Expect = 0.003
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 251 LETLRALYLGDNDFEVLPAEIGNLKNLQ 278
L L + L A +G L
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKS 30
Score = 28.2 bits (64), Expect = 2.7
Identities = 2/22 (9%), Positives = 9/22 (40%)
Query: 5 TRITLSHNKLKEIPPGLANLVN 26
++ + +L ++ L +
Sbjct: 145 SKQQQIYQELTDLKTAFERLGH 166
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 132 bits (334), Expect = 1e-36
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
FLP M + N GHIV ++S AG V +P L+ YC+SKFA G + L +EL + + +K
Sbjct: 150 FLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELA-ALQITGVKT 208
Query: 188 TSIFPFMVDTGLCKNPKIKMNRL 210
T + P V+TG KNP +
Sbjct: 209 TCLCPNFVNTGFIKNPSTSLGPT 231
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 125 bits (317), Expect = 4e-32
Identities = 51/297 (17%), Positives = 87/297 (29%), Gaps = 60/297 (20%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
+ +N+L+ P + + L L L NQI +P + ++ L+ N+L +
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392
Query: 64 PRGFGA--FPVLEVLDLTYNNLNE------QSLPGNFFMLETLRALYLGDNDFEVLPAEI 115
P F A V+ +D +YN + L F + ++ L +N P E+
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452
Query: 116 -GNLKNLQII------LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
L I L + ++ L
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLK---------DENENFKNTYLL------------- 490
Query: 169 MEALAEELRED-ARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPV 222
+ D N K T + D P + N S P
Sbjct: 491 -----TSI--DLRFN---KLTKLSD---DFRATTLPYLVGIDLSYNSFSKFPTQPLNSST 537
Query: 223 LEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L+ F D N P + +L L +G ND + +I N+ +
Sbjct: 538 LKGFGIRNQRDAQGNRTLR-EWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISV 591
Score = 110 bits (276), Expect = 9e-27
Identities = 46/303 (15%), Positives = 90/303 (29%), Gaps = 49/303 (16%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP---------TSLSSLPKLRILNLGMNR 59
+ L ++P L L ++++ + N+ + K++I+ +G N
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316
Query: 60 LSSL--PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
L + L +L+ YN L F L +L L N +PA G
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLE--GKLPAFGSEIKLASLNLAYNQITEIPANFCG 374
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ ++ + N + I ++ + + S + + + L
Sbjct: 375 FTEQVENLS-------FAHN--KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425
Query: 177 REDARNSKI---------KFTSIFPFMVDTGLCKNPK------IKMNRLSSLPRGFGAFP 221
+ + L + N L+ +P+
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPK-----ELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480
Query: 222 VLEAFSFT--TILDLTYNNLNEQSLPGNFFM--LETLRALYLGDNDFEVLPAEIGNLKNL 277
+ T +DL +N L L +F L L + L N F P + N L
Sbjct: 481 NENFKNTYLLTSIDLRFNKL--TKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538
Query: 278 QIM 280
+
Sbjct: 539 KGF 541
Score = 106 bits (266), Expect = 2e-25
Identities = 46/310 (14%), Positives = 92/310 (29%), Gaps = 70/310 (22%)
Query: 12 NKLKEIPPGLANLVNLEILTLF-NNQIETLPTSLSSLPKLRILNLGMNRLSSLPR----- 65
+ K NL +L + ++ + LPT L +LP+++++N+ NR S +
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295
Query: 66 ----GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
++++ + YNNL + + ++ L L N E G+ L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355
Query: 122 QII------LETFLPDMMEKNRG---------HIVGISSMAGIVGLPNLVPYCASKFAVR 166
+ + + + I ++ + +
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM----------- 404
Query: 167 GLMEALAEELREDARNSKIKFTSIFPFMVDT---GLCKNPKIKM-----NRLSSLPRG-F 217
+ S + S+ D K + N++S P+ F
Sbjct: 405 -------SAI----DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453
Query: 218 GAFPVLEAFSFTTILDLTYNNLNE------QSLPGNFFMLETLRALYLGDNDFEVLPAEI 271
L + ++L N L E + NF L ++ L N L +
Sbjct: 454 STGSPL------SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507
Query: 272 --GNLKNLQI 279
L L
Sbjct: 508 RATTLPYLVG 517
Score = 99.7 bits (249), Expect = 3e-23
Identities = 42/304 (13%), Positives = 87/304 (28%), Gaps = 61/304 (20%)
Query: 5 TRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMN 58
T ++L +P + L LE+L L ++ + P +S+
Sbjct: 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143
Query: 59 RLSSLPRGFGAFPVLEVLDLTYNNLN----EQSLPGNFFMLETLRALYLGDNDFEVLPAE 114
P + DL + +N ++S+ + + + N+ +
Sbjct: 144 HYQKTF--VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201
Query: 115 IGNLKNLQ------------IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
+ L L+ I E + + E + + + L ++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV------- 254
Query: 163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPR-- 215
E+ + P T L P++++ NR S +
Sbjct: 255 ------------EV------YNCPNLTKLP----TFLKALPEMQLINVACNRGISGEQLK 292
Query: 216 -GFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNL 274
+ A I+ + YNNL + + ++ L L N E G+
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352
Query: 275 KNLQ 278
L
Sbjct: 353 IKLA 356
Score = 97.8 bits (244), Expect = 2e-22
Identities = 45/280 (16%), Positives = 88/280 (31%), Gaps = 51/280 (18%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGA 69
S + K I + + +N I + ++ L KLR +G +
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV----AENI 223
Query: 70 FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQIILETF 128
E + Y + + + L+ L + + + LP + L +Q+I
Sbjct: 224 CEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI---- 278
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DARNSKIKF 187
+ NR + + P E+++ + +K
Sbjct: 279 ---NVACNR--GISGEQLKDDWQALADAPVG--------------EKIQIIYIGYNNLKT 319
Query: 188 TSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQ 242
+ +T L K K+ M N+L FG+ L L+L YN +
Sbjct: 320 FPV-----ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL------ASLNLAYNQI--T 366
Query: 243 SLPGNFF-MLETLRALYLGDNDFEVLPA--EIGNLKNLQI 279
+P NF E + L N + +P + ++ +
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406
Score = 92.8 bits (231), Expect = 7e-21
Identities = 35/305 (11%), Positives = 77/305 (25%), Gaps = 75/305 (24%)
Query: 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNR 59
L T+I N + + + L L + N+
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ---- 237
Query: 60 LSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP------- 112
+ + L +++ LP L ++ + + N
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296
Query: 113 --AEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
A+ + +QII + N ++ + + L
Sbjct: 297 ALADAPVGEKIQIIY-------IGYN--NLKTFPVETSLQKMKKL--------------- 332
Query: 171 ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLE 224
L + +++ P K+ N+++ +P G +E
Sbjct: 333 ---GML--ECLYNQL--EGKLP-----AFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380
Query: 225 AFSFTTILDLTYNNLNEQSLPGNFFM--LETLRALYLGDN--------DFEVLPAEIGNL 274
L +N L + +P F + + A+ N +F+ L
Sbjct: 381 ------NLSFAHNKL--KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 275 KNLQI 279
N+
Sbjct: 433 INVSS 437
Score = 92.4 bits (230), Expect = 9e-21
Identities = 44/282 (15%), Positives = 79/282 (28%), Gaps = 64/282 (22%)
Query: 5 TRITLSHNKLKEIPP--GLANLVNLEILTLFNNQIE--------TLPTSLSSLPKLRILN 54
++ +HNKLK IP ++ + + N+I L + + +N
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 55 LGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNE------QSLPGNFFMLETLRALYLGDND 107
L N++S P+ F L ++L N L E + NF L ++ L N
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Query: 108 FEVLPAEI--GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
L + L L I + N + + L
Sbjct: 500 LTKLSDDFRATTLPYLVGID-------LSYNS--FSKFPT--QPLNSSTL---------- 538
Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAF 220
+G +R + +P G+ P + N + +
Sbjct: 539 KGF------GIRNQRDAQGNRTLREWP----EGITLCPSLTQLQIGSNDIRKVNEKI--T 586
Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN 262
P + +LD+ N L L +
Sbjct: 587 PNIS------VLDIKDNPNISIDLSY-VCPYIEAGMYMLFYD 621
Score = 83.2 bits (206), Expect = 1e-17
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 14/132 (10%)
Query: 4 ITRITLSHNKLKEIPPGLA--NLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNR-- 59
+T I L NKL ++ L L + L N PT + L+ + R
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549
Query: 60 -----LSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 114
L P G P L L + N++ + + + L + DN +
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI--RKVNEKI--TPNISVLDIKDNPNISIDLS 605
Query: 115 -IGNLKNLQIIL 125
+ + +
Sbjct: 606 YVCPYIEAGMYM 617
Score = 80.5 bits (199), Expect = 8e-17
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTL-------FNNQIETLPTSLSSLPKLRIL 53
+ Y+ I LS+N + P N L+ + N + P ++ P L L
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571
Query: 54 NLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
+G N + + P + VLD+ N L L +
Sbjct: 572 QIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSY-VCPYIEAGMYMLFYD 621
Score = 78.2 bits (193), Expect = 6e-16
Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 87/314 (27%)
Query: 9 LSHNKLK-----EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS- 62
L + K P G++ ++ E T + P+ +L + ++S
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY--QKTFVDYDPREDFSDLIKDCINSD 169
Query: 63 -----LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF--------- 108
+ + + NN+ + L LR Y+G++ F
Sbjct: 170 PQQKSIKKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227
Query: 109 -----------EVLPAEIGNLKNLQII------LETFLPDMMEKNRGHIVGISSMAGIVG 151
+ + NLK+L + T LP +
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT----------------FLKA 271
Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKI---KMN 208
LP + + + + + S + + + D + + +I N
Sbjct: 272 LPEM--------------QLI--NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 209 RLSSL--PRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 266
L + L +L+ YN L F L +L L N
Sbjct: 316 NLKTFPVETSLQKMKKL------GMLECLYNQLE--GKLPAFGSEIKLASLNLAYNQITE 367
Query: 267 LPAEI-GNLKNLQI 279
+PA G + ++
Sbjct: 368 IPANFCGFTEQVEN 381
Score = 59.3 bits (144), Expect = 8e-10
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 9 LSHNKL-KEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR-G 66
N+ +E P G+ +L L + +N I + + P + +L++ N S+
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSY 606
Query: 67 FGAFPVLEVLDLTYNNLNE 85
+ + L Y+ +
Sbjct: 607 VCPYIEAGMYMLFYDKTQD 625
Score = 57.4 bits (139), Expect = 3e-09
Identities = 27/259 (10%), Positives = 59/259 (22%), Gaps = 45/259 (17%)
Query: 26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTYNNL- 83
N + SL+S ++ L+L S +P G LEVL L +
Sbjct: 59 NWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118
Query: 84 --NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIV 141
P + + +
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHY--QKTFVDYDPREDFSDLIKD------------ 164
Query: 142 GISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCK 201
I+S + + + T + + +
Sbjct: 165 CINSDPQQKSIKKS----------SRITLKDTQIG-----QLSNNITFVSK-----AVMR 204
Query: 202 NPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGD 261
K++ + + F + Y + + + L+ L + + +
Sbjct: 205 LTKLRQFYMGN-----SPFVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYN 258
Query: 262 NDF-EVLPAEIGNLKNLQI 279
LP + L +Q+
Sbjct: 259 CPNLTKLPTFLKALPEMQL 277
Score = 44.6 bits (106), Expect = 4e-05
Identities = 5/57 (8%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLP 64
+ N ++++ + N+ +L + +N ++ + + + + L ++ +
Sbjct: 573 IGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 118 bits (297), Expect = 2e-29
Identities = 54/294 (18%), Positives = 92/294 (31%), Gaps = 57/294 (19%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
+ HNK++ + V L L L NQIE +P + ++ L N+L +
Sbjct: 576 GLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634
Query: 64 PRGFGA--FPVLEVLDLTYNNL----NEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
P F A V+ +D +YN + S + + + L N+ + P E+
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694
Query: 117 NLKNLQII------LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
+ I + + + ++ G+ + I +L
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI----DL--------------- 735
Query: 171 ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEA 225
N K TS+ D P + N SS P L+A
Sbjct: 736 ---------RFN---KLTSLSD---DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA 780
Query: 226 FSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
F D N + P +L L +G ND + ++ L I
Sbjct: 781 FGIRHQRDAEGNRILR-QWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYI 831
Score = 113 bits (284), Expect = 1e-27
Identities = 45/290 (15%), Positives = 81/290 (27%), Gaps = 50/290 (17%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLS 61
+ ++I + N +E P S L + KL +L+ N++
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLP--AEIGNL 118
L FG L L L YN + + +P +F + + L N + +P ++
Sbjct: 587 HLE-AFGTNVKLTDLKLDYNQI--EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643
Query: 119 KNLQIILETFLPDMMEKNR--GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ + N+ IS N +
Sbjct: 644 YVMGSV-------DFSYNKIGSEGRNISCSMDDYKGINA------------------STV 678
Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFT-- 229
S + + I N ++S+P +
Sbjct: 679 TL----SYNEIQKFPTEL----FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730
Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
T +DL +N L S L L + + N F P + N L+
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA 780
Score = 109 bits (275), Expect = 2e-26
Identities = 51/333 (15%), Positives = 95/333 (28%), Gaps = 80/333 (24%)
Query: 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI--------------------ETLP 41
L T+I N++ I + L L+I+ N+ E
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484
Query: 42 TSLSSLPKLRILNL-GMNRLSSLPRGFGAFPVLEVLDLTYNNL--------NEQSLPGNF 92
S S+L L + L ++ LP P L+ L++ N + L +
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544
Query: 93 FMLETLRALYLGDNDFEVLPAE--IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV 150
++ Y+G N+ E PA + + L ++ N+ + +
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL-------DCVHNK-----VRHLEAFG 592
Query: 151 GLPNL------------VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198
L +P A +E L ++K+ P + +
Sbjct: 593 TNVKLTDLKLDYNQIEEIP--EDFCAFTDQVEGL------GFSHNKL---KYIPNIFNAK 641
Query: 199 LCKNPK---IKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETL 254
N++ S R + + L+YN + Q P F +
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI--QKFPTELFATGSPI 699
Query: 255 RALYLGDNDFEVLPAE--------IGNLKNLQI 279
+ L +N +P N L
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Score = 99.6 bits (248), Expect = 4e-23
Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 1 MLYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP--------TSLSSLPKLR 51
+ + +TLS+N++++ P A + + L NN + ++P + + L
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731
Query: 52 ILNLGMNRLSSLPR--GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF- 108
++L N+L+SL P L +D++YN S P L+A +
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDA 789
Query: 109 ------EVLPAEIGNLKNLQII 124
P I +L +
Sbjct: 790 EGNRILRQWPTGITTCPSLIQL 811
Score = 94.6 bits (235), Expect = 2e-21
Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 49/280 (17%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
+ ++K I + + N+I + ++ L KL+I+ + +
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQIILET 127
E + Y E + ++ L+ L + L + LP + +L LQ +
Sbjct: 469 ----WEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN-- 521
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
+ NR + L + + + +
Sbjct: 522 -----IACNR-----------GISAAQLKADWTRLADDEDTGPKI-QIF--YMGYNNL-- 560
Query: 188 TSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQ 242
L K K+ + N++ L FG L T L L YN + +
Sbjct: 561 EEF---PASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL------TDLKLDYNQI--E 608
Query: 243 SLPGNFF-MLETLRALYLGDNDFEVLP--AEIGNLKNLQI 279
+P +F + + L N + +P ++ +
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Score = 93.8 bits (233), Expect = 4e-21
Identities = 45/282 (15%), Positives = 80/282 (28%), Gaps = 63/282 (22%)
Query: 4 ITRITLSHNKLKEIPP--GLANLVNLEILTLFNNQIETLPTSLSS------LPKLRILNL 55
+ + SHNKLK IP ++ + + N+I + ++S + L
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680
Query: 56 GMNRLSSLPRG-FGAFPVLEVLDLTYNNLNE------QSLPGNFFMLETLRALYLGDNDF 108
N + P F + + L+ N + + GN+ L + L N
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740
Query: 109 EVLPAEI--GNLKNLQIILETFLPDMMEKNRGHIVGISSM-AGIVGLPNLVPYCASKFAV 165
L + L L + + N SS + L
Sbjct: 741 TSLSDDFRATTLPYLSNMD-------VSYNC-----FSSFPTQPLNSSQL---------- 778
Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAF 220
+A +R + +P TG+ P + N + +
Sbjct: 779 ----KAF--GIRHQRDAEGNRILRQWP----TGITTCPSLIQLQIGSNDIRKVDEKL--T 826
Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN 262
P L ILD+ N + +E + L D
Sbjct: 827 PQL------YILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
Score = 88.0 bits (218), Expect = 3e-19
Identities = 43/300 (14%), Positives = 77/300 (25%), Gaps = 49/300 (16%)
Query: 4 ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRL 60
+T ++L+ K +P + L L++L+ + L
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384
Query: 61 SSLPRGFGAFP-VLEVLDLTYNNLNE----QSLPGNFFMLETLRALYLGDNDFEVLPAEI 115
+ F + L + DL + +N + + + + + N + I
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444
Query: 116 GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
L LQII + V + + E
Sbjct: 445 QRLTKLQII-------YFANSP-----------FTYDNIAVDWEDANSDYAKQYENEELS 486
Query: 176 LRE-------DARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRGFGAFPVL 223
+ N + P L P+++ NR S + + L
Sbjct: 487 WSNLKDLTDVELYNCPN--MTQLP----DFLYDLPELQSLNIACNRGISAAQLKADWTRL 540
Query: 224 EAFSFT----TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
T I + YNNL E + + L L N L G L
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599
Score = 82.6 bits (204), Expect = 2e-17
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTL-------FNNQIETLPTSLSSLPKLRIL 53
+ Y++ + +S+N P N L+ + N + PT +++ P L L
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811
Query: 54 NLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
+G N + + P L +LD+ N + +E + L D
Sbjct: 812 QIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
Score = 79.9 bits (197), Expect = 1e-16
Identities = 46/292 (15%), Positives = 84/292 (28%), Gaps = 41/292 (14%)
Query: 10 SHNKLKEIPP-GLANLVNLEILTLFNNQIET-LPTSLSSLPKLRILNLGMNRLSSLPRGF 67
+ + P L N + L+L + +P ++ L +L++L+ G + + R F
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 68 GAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEIGNLKNLQIILE 126
G + + + F + L L + P E+ +K I
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISL 425
Query: 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG--LMEALAEELREDARNSK 184
NR I IS I L L EDA +
Sbjct: 426 KDTQIGNLTNR--ITFISK--AIQRLTKL-----QIIYFANSPFTYDNIAVDWEDANSDY 476
Query: 185 IKFTSIFPFMVDTGLCKNPKIK------MNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
K + ++ LP P L+ L++ N
Sbjct: 477 AKQYENEE----LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ------SLNIACNR 526
Query: 239 L--------NEQSLPGNFFMLETLRALYLGDNDFEVLPAE--IGNLKNLQIM 280
+ L + ++ Y+G N+ E PA + + L ++
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578
Score = 37.9 bits (88), Expect = 0.004
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLE 282
T L L + +P L L+ L G + V G+ + M E
Sbjct: 326 TGLSLAGFGA-KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 112 bits (283), Expect = 8e-29
Identities = 57/284 (20%), Positives = 85/284 (29%), Gaps = 47/284 (16%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSL--PKLRILNLGMNRLSS 62
R + AN N +I T ++ L P L L L
Sbjct: 36 QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ 95
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
P L+ + + L LP L L L N LPA I +L L+
Sbjct: 96 FPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DAR 181
+ + + LP + + +GL L+
Sbjct: 154 EL------SIRACPE-----------LTELPEPLASTDASGEHQGL-----VNLQSLRLE 191
Query: 182 NSKIKF--TSIFPFMVDTGLCKNPK---IKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
+ I+ SI +N K I+ + LS+L P LE LDL
Sbjct: 192 WTGIRSLPASI-------ANLQNLKSLKIRNSPLSALGPAIHHLPKLE------ELDLRG 238
Query: 237 NNLNEQSLPGNFFMLETLRALYLGD-NDFEVLPAEIGNLKNLQI 279
+ P F L+ L L D ++ LP +I L L+
Sbjct: 239 CTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281
Score = 101 bits (253), Expect = 1e-24
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNL-GMNRLSSL 63
+ L ++ +P +ANL NL+ L + N+ + L ++ LPKL L+L G L +
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 64 PRGFGAFPVLEVLDLT-YNNLNEQSLPGNFFMLETLRALYLGDN-DFEVLPAEIGNLKNL 121
P FG L+ L L +NL +LP + L L L L + LP+ I L
Sbjct: 246 PPIFGGRAPLKRLILKDCSNL--LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Query: 122 QIIL 125
IIL
Sbjct: 304 CIIL 307
Score = 83.1 bits (206), Expect = 4e-18
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 3/106 (2%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLF-NNQIETLPTSLSSLPKLRILNL-GMNRLSSLPRG 66
+ ++ L + P + +L LE L L + P L+ L L + L +LP
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112
LE LDL +N LP L + + + L
Sbjct: 273 IHRLTQLEKLDL-RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317
Score = 56.5 bits (137), Expect = 3e-09
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 12 NKLKEIPPGLANLVNLEILTLFNN-QIETLPTSLSSLPKLRILNLGMNRLSSLPR 65
+ L +P + L LE L L + LP+ ++ LP I+ + + + L +
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318
Score = 37.6 bits (88), Expect = 0.004
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 5 TRITLSHN-KLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKL 50
++ L L +P +A L I+ + + L + P
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
Score = 31.1 bits (71), Expect = 0.48
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
+ L +LP LE LDL +N LP L + + + L
Sbjct: 264 SNLLTLPLDIHRLTQLE------KLDL-RGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316
Query: 268 P 268
Sbjct: 317 D 317
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 111 bits (279), Expect = 3e-28
Identities = 54/283 (19%), Positives = 93/283 (32%), Gaps = 61/283 (21%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
+ + LS N L +I LA LE+L L +N + L SL LR L+L N +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE 94
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNL 121
L G P +E L NN++ + + + +YL +N +L + G +
Sbjct: 95 LLVG----PSIETLHAANNNIS--RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRV 146
Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
Q + ++ N I ++ L E L + +
Sbjct: 147 QYL-------DLKLNE--IDTVNFAELAASSDTL------------------EHL--NLQ 177
Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
+ I + G K+K N+L+ + F + + + L
Sbjct: 178 YNFI--YDV------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT------WISLRN 223
Query: 237 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
N L + + L L N F KN ++
Sbjct: 224 NKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264
Score = 106 bits (266), Expect = 2e-26
Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 52/278 (18%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
++ + LK+ + N++ L L N + + L+ KL +LNL N L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG-NLKN 120
+ L LDL N + Q L ++ L+ +N+ + G KN
Sbjct: 72 ETL-DLESLSTLRTLDLNNNYV--QELLV----GPSIETLHAANNNISRVSCSRGQGKKN 124
Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
+ + N+ I + + + + L D
Sbjct: 125 IY----------LANNK--ITMLRDLD-EGCRSRV------------------QYL--DL 151
Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLN 240
+ ++I + + ++ ++ N + + F L+ LDL+ N L
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLK------TLDLSSNKL- 203
Query: 241 EQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+ F + + L +N ++ + +NL+
Sbjct: 204 -AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240
Score = 88.9 bits (221), Expect = 3e-20
Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 3/122 (2%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ L +N + ++ L+ L L +N++ + S + ++L N+L +
Sbjct: 172 EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
+ LE DL N + +L F + ++ + + L + + +
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTL 288
Query: 125 LE 126
Sbjct: 289 GH 290
Score = 73.9 bits (182), Expect = 5e-15
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 14 LKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG-FGAFP 71
+ EI N +I + ++ ++ S S ++ L+L N LS + F
Sbjct: 2 IHEIKQ---NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58
Query: 72 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
LE+L+L+ N L E + L TLR L L +N + E+ +++
Sbjct: 59 KLELLNLSSNVLYE---TLDLESLSTLRTLDLNNNYVQ----ELLVGPSIE 102
Score = 73.1 bits (180), Expect = 1e-14
Identities = 37/243 (15%), Positives = 73/243 (30%), Gaps = 52/243 (21%)
Query: 40 LPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LET 97
+ + + +I + + L + ++ LDL+ N L +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTK 59
Query: 98 LRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP 157
L L L N ++ +L L+ + + N + ++ P++
Sbjct: 60 LELLNLSSNVLYETL-DLESLSTLRTL-------DLNNNY-----VQE---LLVGPSI-- 101
Query: 158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG- 216
E L A N+ I S G KN + N+++ L
Sbjct: 102 ----------------ETL--HAANNNI---SRVSCSRGQGK-KNIYLANNKITMLRDLD 139
Query: 217 FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 276
G + LDL N ++ + +TL L L N + ++
Sbjct: 140 EGCRSRV------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAK 192
Query: 277 LQI 279
L+
Sbjct: 193 LKT 195
Score = 57.3 bits (139), Expect = 2e-09
Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+T I+L +NKL I L NLE L N R+ + + L
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
+ L Y + LP F R + LG +
Sbjct: 276 TGQNEEECTVPTLGH-YGAYCCEDLPAPFA----DRLIALGHHHHH 316
Score = 27.6 bits (62), Expect = 5.9
Identities = 3/38 (7%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 243 SLPGNFFMLETLRALYLGDNDFEVLPAEIG-NLKNLQI 279
++ + + D+ + A + + N++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKE 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 112 bits (283), Expect = 2e-27
Identities = 68/309 (22%), Positives = 109/309 (35%), Gaps = 51/309 (16%)
Query: 4 ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
+ + L +N +IPP L+N L L L N + T+P+SL SL KLR L L +N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 62 -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
+P+ LE L L +N+L +P L + L +N +P IG L+
Sbjct: 456 GEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 120 NLQIILETFLPDMMEKNR--GHI-VGISSM------------------AGIVGLPNLVPY 158
NL I+ + N G+I + A + +
Sbjct: 515 NLAILK-------LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLS-S 212
++ + + ++F I L +
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS----EQLNRLSTRNPCNITSRVYGGH 623
Query: 213 LPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEI 271
F + LD++YN L +P + L L LG ND +P E+
Sbjct: 624 TSPTFDNNGSM------MFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 272 GNLKNLQIM 280
G+L+ L I+
Sbjct: 677 GDLRGLNIL 685
Score = 95.0 bits (237), Expect = 1e-21
Identities = 66/284 (23%), Positives = 101/284 (35%), Gaps = 56/284 (19%)
Query: 9 LSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLS-SLPKLRILNLGMNRLS-SLP 64
+S N+ IPP L +L+ L+L N+ +P LS + L L+L N ++P
Sbjct: 254 ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQI 123
FG+ +LE L L+ NN + + + L+ L L N+F LP + NL
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT---NLSA 368
Query: 124 ILETFLPDMMEKNRGHIVG-ISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
L T + N + G I L + +
Sbjct: 369 SLLTL---DLSSN--NFSGPILPNLCQNPKNTL-----QELYL----------------- 401
Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKM-----NRLS-SLPRGFGAFPVLEAFSFTTILDLTY 236
FT P L ++ N LS ++P G+ L L L
Sbjct: 402 QNNGFTGKIP----PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR------DLKLWL 451
Query: 237 NNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQI 279
N L +P ++TL L L ND +P+ + N NL
Sbjct: 452 NMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Score = 86.1 bits (214), Expect = 1e-18
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 5 TRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPT-SLSSLPKLRILNLGMNRLS 61
T + LS N +PP + LE L L +N LP +L + L++L+L N S
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 62 -SLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDFE-VLPAEIG 116
LP L LDL+ NN + + N TL+ LYL +N F +P +
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 117 NLKNLQII 124
N L +
Sbjct: 416 NCSELVSL 423
Score = 83.8 bits (208), Expect = 7e-18
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRG 66
+S N P L + L+ L + N++ ++S+ +L++LN+ N+ +P
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP- 265
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFE-VLPAEIGNLKNLQII 124
L+ L L N +P +TL L L N F +P G+ L+ +
Sbjct: 266 -LPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Score = 73.8 bits (182), Expect = 1e-14
Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 11/132 (8%)
Query: 4 ITRITLSHNKLK----EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNR 59
+T I LS L + L +L LE L L N+ I + L L+L N
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111
Query: 60 LS-SLP--RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEI 115
LS + G+ L+ L+++ N L+ L +L L L N
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171
Query: 116 ---GNLKNLQII 124
L+ +
Sbjct: 172 VLSDGCGELKHL 183
Score = 72.2 bits (178), Expect = 5e-14
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
Query: 9 LSHNKL-KEIPPGLA---NLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-S 62
LS N + G L+ L + N+I + +S L L++ N S
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 215
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNL 121
+P G L+ LD++ N L+ L+ L + N F +P LK+L
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 271
Query: 122 QII 124
Q +
Sbjct: 272 QYL 274
Score = 70.3 bits (173), Expect = 2e-13
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 12/131 (9%)
Query: 3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE-TLPT--SLSSLPKLRILNLGMNR 59
+ + LS++ + G +L L L N + + T SL S L+ LN+ N
Sbjct: 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137
Query: 60 LS-SLPRGFGA-FPVLEVLDLTYNNLNEQSLPGNFFM---LETLRALYLGDNDFE-VLPA 113
L G LEVLDL+ N+++ + + + L+ L + N +
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSIS-GANVVGWVLSDGCGELKHLAISGNKISGDVD- 195
Query: 114 EIGNLKNLQII 124
+ NL+ +
Sbjct: 196 -VSRCVNLEFL 205
Score = 68.0 bits (167), Expect = 1e-12
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 4 ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
++ P N ++ L + N + +P + S+P L ILNLG N +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 62 -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
S+P G L +LDL+ N L+ +P L L + L +N+
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNNNLS 717
Score = 41.8 bits (99), Expect = 3e-04
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIM 280
LD++ NN + +P L+ L + N I L+++
Sbjct: 203 EFLDVSSNNFS-TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Score = 39.9 bits (94), Expect = 0.001
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 230 TILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFE-VLPAEIGNLKNLQIM 280
L L N +P +TL L L N F +P G+ L+ +
Sbjct: 272 QYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Score = 38.7 bits (91), Expect = 0.003
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAE-IGNLKNLQIM 280
T LDL+ N+ ++P F L +L L N+F LP + + ++ L+++
Sbjct: 297 TGLDLSGNHFY-GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Score = 37.6 bits (88), Expect = 0.006
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 211 SSLPRGFGAFP-VLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLP 268
L GF A L + + L L+ +++N S+ G F +L +L L N +
Sbjct: 60 KPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSG-FKCSASLTSLDLSRNSLSGPVT 117
Query: 269 A--EIGNLKNLQI 279
+G+ L+
Sbjct: 118 TLTSLGSCSGLKF 130
Score = 37.2 bits (87), Expect = 0.009
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKN 276
P L S LD++ N L+ L+ L + N F +P LK+
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270
Query: 277 LQI 279
LQ
Sbjct: 271 LQY 273
Score = 36.0 bits (84), Expect = 0.016
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 230 TILDLTYNNLNEQ--SLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
T +DL+ LN ++ + L L +L+L ++ + +L
Sbjct: 53 TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLT 103
Score = 35.3 bits (82), Expect = 0.035
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEI---GNLKNLQ 278
L+++ N L+ L +L L L N L+
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Score = 33.3 bits (77), Expect = 0.11
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM---LETLRALYLGDNDF 264
N L G + +LDL+ N+++ + + + L+ L + N
Sbjct: 136 NTLD----FPGKVSGGLKLNSLEVLDLSANSIS-GANVVGWVLSDGCGELKHLAISGNKI 190
Query: 265 E-VLPAEIGNLKNLQI 279
+ + NL+
Sbjct: 191 SGDVD--VSRCVNLEF 204
Score = 33.0 bits (76), Expect = 0.15
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQ-SLPGNFFMLETLRALYLGDNDFE-VLPAEIG-NL 274
G+ + + T LDL+ N+L+ + + L+ L + N + G L
Sbjct: 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150
Query: 275 KNLQI 279
+L++
Sbjct: 151 NSLEV 155
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 111 bits (279), Expect = 4e-27
Identities = 56/288 (19%), Positives = 90/288 (31%), Gaps = 49/288 (17%)
Query: 2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
+ + I L + I L+ L L + LP+ L L L+ L L N+
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF 313
Query: 61 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA---EIG 116
+L + FP L L + N + G LE LR L L +D E ++
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
NL +LQ + + N + + + A P L E L
Sbjct: 374 NLSHLQSLN-------LSYNE--PLSLKTEA-FKECPQL------------------ELL 405
Query: 177 REDARNSKIKFTSIFPFMVDTGLC--KNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILD 233
D +++ L K + + L F P L+ L+
Sbjct: 406 --DLAFTRL--KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ------HLN 455
Query: 234 LTYNNLNE--QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
L N+ + + L L L L D + +LK +
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503
Score = 105 bits (263), Expect = 4e-25
Identities = 48/288 (16%), Positives = 86/288 (29%), Gaps = 29/288 (10%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
+ S N L I + L+NL L L QI + + S +L L L N L
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPA-EIGNL 118
+ L+ L ++ S+ +TL +LYLG N + +
Sbjct: 95 FMAETALSGPKALKHLFFIQTGIS--SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL------VPYCASKFAVRGLMEAL 172
+ L+++ + N I +S + L + G ++
Sbjct: 153 EKLKVLD-------FQNNA--IHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202
Query: 173 A-EELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI 231
+ L + + L + + F L S +
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG-TFEDMDDEDISP--AVFEGLCEMSVES- 258
Query: 232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
++L + S F L+ L L LP+ + L L+
Sbjct: 259 INLQKHYFFNIS-SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKK 305
Score = 100 bits (252), Expect = 1e-23
Identities = 54/282 (19%), Positives = 85/282 (30%), Gaps = 53/282 (18%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG 66
L+ N L + L+ L+ L I ++ L + L L LG N +SS+
Sbjct: 88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147
Query: 67 -FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL--GDNDFEVLPAEIGNLKNLQI 123
L+VLD N ++ S + L+ L L ND + + Q
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+ +N I + I L +
Sbjct: 207 LNFGGT-----QNLLVIFKGLKNSTIQSLWLG-----------------------TFEDM 238
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILDLTYN 237
+ S F ++ + ++ F F L+ LDLT
Sbjct: 239 DDEDISPAVF----EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ------ELDLTAT 288
Query: 238 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 278
+L+ LP L TL+ L L N FE L N +L
Sbjct: 289 HLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328
Score = 97.0 bits (242), Expect = 2e-22
Identities = 59/294 (20%), Positives = 96/294 (32%), Gaps = 56/294 (19%)
Query: 1 MLYITRITLSHNK-LKEIPPGLAN--LVNLEILTLFNNQIETLPTSL---SSLPKLRILN 54
+ + L I GL N + +L + T + E + ++ + +N
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260
Query: 55 LGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 113
L + ++ F F L+ LDLT +L+ LP L TL+ L L N FE L
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQ 318
Query: 114 E-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEAL 172
N +L + ++ N + L NL
Sbjct: 319 ISASNFPSLTHLS-------IKGN--TKRLELGTGCLENLENL----------------- 352
Query: 173 AEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAF 226
EL D + I+ + L ++ N SL F P LE
Sbjct: 353 -REL--DLSHDDIETSDCCNLQ----LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE-- 403
Query: 227 SFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
+LDL + L + F L L+ L L + ++ ++ L LQ
Sbjct: 404 ----LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453
Score = 93.9 bits (234), Expect = 2e-21
Identities = 58/284 (20%), Positives = 92/284 (32%), Gaps = 69/284 (24%)
Query: 5 TRITLSHNKLK-EIPPG-LANLVNLEILTLFNNQIETLP---TSLSSLPKLRILNLGMNR 59
T +++ N + E+ G L NL NL L L ++ IET L +L L+ LNL N
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 60 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GN 117
SL F P LE+LDL + L + F L L+ L L + ++ ++
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
L LQ + ++ N I + L L E L
Sbjct: 448 LPALQHLN-------LQGNHFPKGNIQKTNSLQTLGRL------------------EIL- 481
Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTY 236
LSS+ + F + ++ +DL++
Sbjct: 482 -VLSF-------------------------CDLSSIDQHAFTSLKMMN------HVDLSH 509
Query: 237 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
N L S L L N ++ + L +
Sbjct: 510 NRL--TSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551
Score = 93.2 bits (232), Expect = 5e-21
Identities = 54/281 (19%), Positives = 86/281 (30%), Gaps = 53/281 (18%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRI--LNLGMNRLSSLP 64
L N + I L++L NN I L +SSL + LNL N ++ +
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
G V + L+ G +++L D D E + + L +
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
+ + + ISS L +EL D
Sbjct: 256 VESINL-------QKHYFFNISSNT-FHCFSGL------------------QEL--DLTA 287
Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILDLTY 236
+ + + +GL +K N+ +L + FP L L +
Sbjct: 288 THLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT------HLSIKG 334
Query: 237 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 277
N + G LE LR L L +D E L+NL
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Score = 91.6 bits (228), Expect = 2e-20
Identities = 47/278 (16%), Positives = 94/278 (33%), Gaps = 23/278 (8%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG- 66
+ L EIP L N + E L N + T+ T+ S L L L+L ++ +
Sbjct: 19 CENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE-IGNLKNLQII 124
F + L+ L LT N L + + L+ L+ + + N K L+ +
Sbjct: 77 FQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134
Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
+ N HI I L A+ L + L++ A N
Sbjct: 135 Y-------LGSN--HISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATNLS 183
Query: 185 IKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSL 244
+ ++ G + + F L+ + ++ T+ +++++ +
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 245 PGNFFM---LETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
F ++ ++ L + F + + LQ
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281
Score = 84.7 bits (210), Expect = 3e-18
Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 63/295 (21%)
Query: 4 ITRITLSHNKLKEIPP----GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMN 58
+ T ++I P GL + ++E + L + + + L+ L+L
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288
Query: 59 RLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDN--DFEVLPAEI 115
LS LP G L+ L L+ N ++L +L L + N E+ +
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKF--ENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346
Query: 116 GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
NL+NL+ + + + ++ + L +L +
Sbjct: 347 ENLENLREL-------DLSHDDIETSDCCNLQ-LRNLSHL------------------QS 380
Query: 176 LREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG--FGAFPVLEAFSF 228
L + ++ S+ + P++++ RL F +L
Sbjct: 381 L--NLSYNEP--LSLKT----EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL----- 427
Query: 229 TTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF----EVLPAEIGNLKNLQI 279
+L+L+++ L+ S F L L+ L L N F + L L+I
Sbjct: 428 -KVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
Score = 81.2 bits (201), Expect = 4e-17
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL----PTSLSSLPKLRILNLGMN 58
+ + LSH+ L L L+ L L N SL +L +L IL L
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486
Query: 59 RLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
LSS+ + F + ++ +DL++N L S L L N ++ +
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRL--TSSSIEALSHLKGIYLNLASNHISIILPSLLP 544
Query: 117 NLKNLQII 124
L + I
Sbjct: 545 ILSQQRTI 552
Score = 74.3 bits (183), Expect = 8e-15
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 9 LSHNKLKEI----PPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL 63
L N + L L LEIL L + ++ + +SL + ++L NRL+S
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
+ L+L N++ LP +L R + L N +
Sbjct: 516 SIEALSHLKGIYLNLASNHI-SIILPSLLPILSQQRTINLRQNPLD 560
Score = 53.9 bits (130), Expect = 3e-08
Identities = 33/233 (14%), Positives = 63/233 (27%), Gaps = 68/233 (29%)
Query: 51 RILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 110
+ N L+ +P E L+ ++N L F L L L L
Sbjct: 15 KTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYW 71
Query: 111 LPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLM 169
+ + + L + ++ N ++ ++ A + G L
Sbjct: 72 IHEDTFQSQHRLDTL-------VLTANP--LIFMAETA-LSGPKAL-------------- 107
Query: 170 EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSF 228
+ L + +SS+ LE
Sbjct: 108 ----KHLF---------------------FIQT------GISSIDFIPLHNQKTLE---- 132
Query: 229 TTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIM 280
L L N+++ F E L+ L +N L E + +L+ +
Sbjct: 133 --SLYLGSNHISSIK-LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182
Score = 46.5 bits (111), Expect = 7e-06
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSS 62
+ + LSHN+L + + L L +N I + P+ L L + R +NL N L
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
LE L + LR + L D
Sbjct: 562 TC---SNIYFLEWYKENMQKLEDTEDT-LCENPPLLRGVRLSDVTL 603
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 109 bits (274), Expect = 2e-26
Identities = 65/303 (21%), Positives = 103/303 (33%), Gaps = 56/303 (18%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
IT + L+HN+L+ +P L L + N I L P LP L++LNL N LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLK 119
L F L L L N++ + F + L L L N L+
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 120 NLQII------LETFLPDMMEKNRG-----------HIVGISSMAGIVGLPNLVPYCASK 162
NLQ + ++ + ++ I S + L
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRL------- 197
Query: 163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRGF 217
L + ++ + L N I+ ++LS+
Sbjct: 198 -----------FGL----FLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSN-- 239
Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKN 276
F L+ + T LDL+YNNLN +F L L +L N+ + L + L N
Sbjct: 240 TTFLGLKWTNLTM-LDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297
Query: 277 LQI 279
++
Sbjct: 298 VRY 300
Score = 100 bits (252), Expect = 2e-23
Identities = 61/284 (21%), Positives = 98/284 (34%), Gaps = 57/284 (20%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG- 66
SH KL ++P L N+ +L L +NQ+ L + + +L L++G N +S L
Sbjct: 11 CSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIIL 125
P+L+VL+L +N L++ S F L L+L N + + KNL +
Sbjct: 69 CQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL- 126
Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
+ N + V L NL +EL N+KI
Sbjct: 127 ------DLSHN--GLSSTKLGT-QVQLENL------------------QEL--LLSNNKI 157
Query: 186 KFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNL 239
+ + N +K N++ G F A L L L L
Sbjct: 158 QALKSEEL----DIFANSSLKKLELSSNQIKEFSPGCFHAIGRL------FGLFLNNVQL 207
Query: 240 NEQSLPGNFFM---LETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
SL + ++R L L ++ LK +
Sbjct: 208 GP-SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250
Score = 97.8 bits (244), Expect = 2e-22
Identities = 65/294 (22%), Positives = 108/294 (36%), Gaps = 54/294 (18%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL---PTSLSSLP--KLRILNLGM 57
+ + + N + I L+NL+ L+L N+ + SL L ILNL
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
Query: 58 NRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-I 115
N++S + F LEVLDL N + ++ + LE + +YL N + L
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450
Query: 116 GNLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAE 174
+ +LQ + M+ + + + S L NL
Sbjct: 451 ALVPSLQRL-------MLRRVA--LKNVDSSPSPFQPLRNL------------------T 483
Query: 175 ELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFT 229
L D N+ I +I M L K+++ N L+ L + +
Sbjct: 484 IL--DLSNNNI--ANINDDM----LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535
Query: 230 T---ILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
+ IL+L N +E F L L+ + LG N+ LPA + N +L+
Sbjct: 536 SHLHILNLESNGFDEIP-VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588
Score = 96.6 bits (241), Expect = 4e-22
Identities = 62/294 (21%), Positives = 107/294 (36%), Gaps = 28/294 (9%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS----LSSLPKLRILNLGMNR 59
++ LS N++KE PG + L L L N Q+ T + +R L+L ++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233
Query: 60 LSSLPRG-FGAFPV--LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEI 115
LS+ F L +LDL+YNNLN +F L L +L N+ + L +
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 116 GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
L N++ + + + I + L L + G+ +
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 176 LRE----DARNSKIKFTSIFPFMVDTGLCKNP----KIKMNRLSSLPRG-FGAFPVLEAF 226
L NS ++ L +P + N++S + F LE
Sbjct: 352 LINLKYLSLSNSFTSLRTL-TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE-- 408
Query: 227 SFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
+LDL N + ++ + LE + +YL N + L + +LQ
Sbjct: 409 ----VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458
Score = 94.7 bits (236), Expect = 2e-21
Identities = 61/310 (19%), Positives = 105/310 (33%), Gaps = 57/310 (18%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT---SLSSLPKLRILNLGMNR 59
+ + LSHN L G L NL+ L L NN+I+ L + + + L+ L L N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 60 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM---LETLRALYLGDNDFEVLPAEI 115
+ G F A L L L L SL + ++R L L ++
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGP-SLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 116 -GNLK--NLQII------LETFLPDMMEKNRG---------HIVGISSMAGIVGLPNLVP 157
LK NL ++ L D +I + S + + GL N+
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVR- 299
Query: 158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPK---IKMNRLSSLP 214
L + ++ A KI S K + ++ N + +
Sbjct: 300 -------YLNLKRSFTKQSISLASLPKIDDFSFQW-------LKCLEHLNMEDNDIPGIK 345
Query: 215 RG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM---LETLRALYLGDNDFEVLPAE 270
F L+ L L+ + + ++L F+ L L L N + ++
Sbjct: 346 SNMFTGLINLK------YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399
Query: 271 -IGNLKNLQI 279
L +L++
Sbjct: 400 AFSWLGHLEV 409
Score = 94.3 bits (235), Expect = 2e-21
Identities = 65/296 (21%), Positives = 96/296 (32%), Gaps = 57/296 (19%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLG----- 56
+T + LS+N L + A L LE L N I+ L SL L +R LNL
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 57 ----MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 111
+ L + F LE L++ N++ F L L+ L L ++ +
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 112 PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEA 171
+L L + KN+ I I S A L +L
Sbjct: 369 TLTNETFVSLAHSPLHIL--NLTKNK--ISKIESDA-FSWLGHL---------------- 407
Query: 172 LAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEA 225
E L + I + I N+ L R F P L+
Sbjct: 408 --EVLD-------LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ- 457
Query: 226 FSFTTILDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
L L L S P F L L L L +N+ + + + L+ L+I
Sbjct: 458 -----RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508
Score = 93.5 bits (233), Expect = 4e-21
Identities = 54/274 (19%), Positives = 96/274 (35%), Gaps = 56/274 (20%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNLGMNRLSSLPR 65
L+ NK+ +I + L +LE+L L N+I L + + L N+ L R
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447
Query: 66 G-FGAFPVLEVLDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 122
F P L+ L L L S P F L L L L +N+ + + + L+ L+
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DAR 181
I+ ++ N ++ + A G + + L +
Sbjct: 508 ILD-------LQHN--NLARLWKHANPGGPIYFLKGLSH--------------LHILNLE 544
Query: 182 NSKIKF--TSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILD 233
++ +F + ++K+ N L++LP F L+ L+
Sbjct: 545 SNGFDEIPVEVFKDL--------FELKIIDLGLNNLNTLPASVFNNQVSLK------SLN 590
Query: 234 LTYNNLNEQSLPGNFF--MLETLRALYLGDNDFE 265
L N + S+ F L L + N F+
Sbjct: 591 LQKNLI--TSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 92.4 bits (230), Expect = 1e-20
Identities = 62/299 (20%), Positives = 104/299 (34%), Gaps = 64/299 (21%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
T+ ++S L +I L LE L + +N I + + + L L+ L+L + S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 62 SLPRGFGAF-----PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF--EVLPAE 114
F L +L+LT N +++ F L L L LG N+ E+ E
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 115 IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAE 174
L+N+ I + N+ + ++ + +P+L +
Sbjct: 426 WRGLENIFEIY-------LSYNK--YLQLTRNS-FALVPSL------------------Q 457
Query: 175 ELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSF 228
L R +K P + + N ++++ LE
Sbjct: 458 RL--MLRRVALKNVDSSPS----PFQPLRNLTILDLSNNNIANINDDMLEGLEKLE---- 507
Query: 229 TTILDLTYNNL-------NEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
ILDL +NNL N L L L L N F+ +P E +L L+I
Sbjct: 508 --ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564
Score = 77.3 bits (191), Expect = 9e-16
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 16/139 (11%)
Query: 1 MLYITRITLSHNKLKEIPPG-LANL--VNLEILTLFNNQIETL-PTSLSSLPKLRILNLG 56
I ++LS+++L L NL +L L N + + S + LP+L L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280
Query: 57 MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN---------FFMLETLRALYLGDN 106
N + L + L+L + +QS+ F L+ L L + DN
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNL-KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339
Query: 107 DFEVLPAEI-GNLKNLQII 124
D + + + L NL+ +
Sbjct: 340 DIPGIKSNMFTGLINLKYL 358
Score = 63.1 bits (154), Expect = 4e-11
Identities = 43/239 (17%), Positives = 72/239 (30%), Gaps = 54/239 (22%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
+ + +L+ +P + VL+LT+N L NF L +L +G N
Sbjct: 6 HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTIS 62
Query: 110 VLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
L E L L+++ ++ N + +S NL
Sbjct: 63 KLEPELCQKLPMLKVL-------NLQHNE--LSQLSDKT-FAFCTNL------------- 99
Query: 169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRG-FGAFPV 222
EL ++ I I K + N LSS G
Sbjct: 100 -----TEL--HLMSNSI--QKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 223 LEAFSFTTILDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
L+ L L+ N + +S + F +L+ L L N + + L
Sbjct: 147 LQ------ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199
Score = 40.4 bits (95), Expect = 7e-04
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 208 NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 266
N LS L F L L L N++ + F + L L L N
Sbjct: 83 NELSQLSDKTFAFCTNLT------ELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSS 135
Query: 267 LPAE-IGNLKNLQIM 280
L+NLQ +
Sbjct: 136 TKLGTQVQLENLQEL 150
Score = 33.4 bits (77), Expect = 0.12
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 4 ITRITLSHNKLKEIPPGL--ANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS 61
+ + L N + + + NL L + N + S++ + +N +
Sbjct: 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF--VNWINETHTNIP 643
Query: 62 SLP 64
L
Sbjct: 644 ELS 646
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 107 bits (270), Expect = 3e-26
Identities = 53/281 (18%), Positives = 100/281 (35%), Gaps = 69/281 (24%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
+ L N++K + A+ +LE L L N + + P + ++L LR L L NRL
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNL 118
+P G F L LD++ N + L F L L++L +GDND + L
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKI--VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
+L+ + +EK + I + A + L L LR
Sbjct: 152 NSLEQL-------TLEKCN--LTSIPTEA-LSHLHGL------------------IVLR- 182
Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
++ ++++ +F L +L++++
Sbjct: 183 --------------------------LRHLNINAIRD--YSFKRLYR---LKVLEISHWP 211
Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 278
++ N L +L + + +P + +L L+
Sbjct: 212 YL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251
Score = 104 bits (261), Expect = 5e-25
Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 70/262 (26%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG 66
+ N L I + L +LE LTL + ++PT +LS L L +L L ++++
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
Query: 67 -FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQII 124
F L+VL++++ ++ N L +L + + +P + +L L+ +
Sbjct: 195 SFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
+ N I I + L L +E++
Sbjct: 254 N-------LSYNP--ISTIEGSM-LHELLRL------------------QEIQ------- 278
Query: 185 IKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQS 243
+ +L+ + F L +L+++ N L +
Sbjct: 279 --------------------LVGGQLAVVEPYAFRGLNYLR------VLNVSGNQL--TT 310
Query: 244 LPGNFF-MLETLRALYLGDNDF 264
L + F + L L L N
Sbjct: 311 LEESVFHSVGNLETLILDSNPL 332
Score = 101 bits (254), Expect = 4e-24
Identities = 53/304 (17%), Positives = 92/304 (30%), Gaps = 69/304 (22%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
+ L+ N + + PG NL NL L L +N+++ +P + L L L++ N++
Sbjct: 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLK 119
L F L+ L++ N+L + F L +L L L + +P E +L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176
Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
L ++ + I I + L L + L
Sbjct: 177 GLIVL-------RLRHLN--INAIRDYS-FKRLYRL------------------KVLE-- 206
Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRG-FGAFPVL---------- 223
S + + L+++P L
Sbjct: 207 --ISHWPYLDTMT----PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 224 ---EAFSFT-----TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNL 274
E + L L P F L LR L + N L + ++
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319
Query: 275 KNLQ 278
NL+
Sbjct: 320 GNLE 323
Score = 87.9 bits (218), Expect = 2e-19
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNR 59
L +T ++++H L +P + +LV L L L N I T+ L L +L+ + L +
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 60 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDF 108
L+ + F L VL+++ N L +L + F + L L L N
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQL--TTLEESVFHSVGNLETLILDSNPL 332
Score = 83.2 bits (206), Expect = 9e-18
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Query: 5 TRITLSHNK-LKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
+ +SH L + P +NL L++ + + +P ++ L LR LNL N +S+
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
+ L+ + L L P F L LR L + N L + ++ N
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321
Query: 121 LQII 124
L+ +
Sbjct: 322 LETL 325
Score = 75.9 bits (187), Expect = 2e-15
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 1 MLYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN 58
++Y+ + LS+N + I L L+ L+ + L Q+ + + L LR+LN+ N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 59 RLSSLPRG-FGAFPVLEVLDLTYNNLN 84
+L++L F + LE L L N L
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 69.7 bits (171), Expect = 3e-13
Identities = 53/250 (21%), Positives = 82/250 (32%), Gaps = 71/250 (28%)
Query: 34 NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNF 92
+ +P + + R+L+LG NR+ +L + F +FP LE L+L N ++ PG F
Sbjct: 20 RKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAF 76
Query: 93 FMLETLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG 151
L LR L L N +++P + L NL + + +N+ IV +
Sbjct: 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD-------ISENK--IVILLDYM-FQD 126
Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS 211
L NL + L + N L
Sbjct: 127 LYNL------------------KSLE---------------------------VGDNDLV 141
Query: 212 SLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPA 269
+ F LE L L NL S+P L L L L + +
Sbjct: 142 YISHRAFSGLNSLE------QLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRD 193
Query: 270 EI-GNLKNLQ 278
L L+
Sbjct: 194 YSFKRLYRLK 203
Score = 38.5 bits (90), Expect = 0.003
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
R ++P G + T +LDL N + + F L L L +N +
Sbjct: 21 KRFVAVPEGI--------PTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAV 71
Query: 268 PAEI-GNLKNLQI 279
NL NL+
Sbjct: 72 EPGAFNNLFNLRT 84
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 106 bits (267), Expect = 3e-26
Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 35/282 (12%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
+T ++ ++++P L + +E+L L + QIE + T + + ++ L +G N +
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNL 118
LP F P+L VL L N+L SLP F L L + +N+ E + +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164
Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
+LQ + + NR V +S + + N+ S A+ +E L
Sbjct: 165 TSLQNL-------QLSSNRLTHVDLSLIPSLFHA-NVSYNLLSTLAIPIAVEEL------ 210
Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
DA ++ I ++ V+ L K++ N L+ +P L +DL+YN
Sbjct: 211 DASHNSI---NVVRGPVNVEL-TILKLQHNNLTDTA-WLLNYPGLV------EVDLSYNE 259
Query: 239 LNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L + + + F+ ++ L LY+ +N L + L++
Sbjct: 260 L--EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 299
Score = 103 bits (259), Expect = 5e-25
Identities = 61/278 (21%), Positives = 103/278 (37%), Gaps = 54/278 (19%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
T + L N L +P G+ N L L++ NN +E + + + L+ L L NRL+
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
+ P L +++YN L +L + L N V+ + L
Sbjct: 180 VD--LSLIPSLFHANVSYNLL--STLAIPIA----VEELDASHNSINVVRGPV--NVELT 229
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
I+ ++ N ++ A ++ P L E+ D
Sbjct: 230 ILK-------LQHNN-----LTDTAWLLNYPGL------------------VEV--DLSY 257
Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQ 242
++++ PF+ L + I NRL +L P L+ +LDL++N+L
Sbjct: 258 NELEKIMYHPFVKMQRL-ERLYISNNRLVALNLYGQPIPTLK------VLDLSHNHL--L 308
Query: 243 SLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
+ N + L LYL N L LKNL +
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346
Score = 94.7 bits (236), Expect = 6e-22
Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 36/278 (12%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPR 65
I + + + L N +I+T N+ + LP + L S ++ +LNL ++ +
Sbjct: 28 IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86
Query: 66 G-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
F ++ L + +N + + LP + F + L L L ND LP I N L
Sbjct: 87 YAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DAR 181
+ M N + I +L S + + +L L +
Sbjct: 145 TLS-------MSNNN--LERIEDDTF-QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 194
Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241
+ + +I + + N ++ + TIL L +NNL +
Sbjct: 195 YNLLSTLAIPIAVEELDASHN------SINVVRGP--------VNVELTILKLQHNNLTD 240
Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
L + L N+ E + ++ L+
Sbjct: 241 ---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275
Score = 90.5 bits (225), Expect = 2e-20
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ LS+N+L++I + LE L + NN++ L +P L++L+L N L +
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 310
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
R F LE L L +N++ +L + TL+ L L ND++
Sbjct: 311 ERNQPQFDRLENLYLDHNSI--VTLKLSTH--HTLKNLTLSHNDWD 352
Score = 36.2 bits (84), Expect = 0.015
Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 195 VDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LET 253
+D+ L + + + + I+ + + + LP
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQ 70
Query: 254 LRALYLGDNDFEVLPAEI-GNLKNLQ 278
+ L L D E + +Q
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQ 96
Score = 34.2 bits (79), Expect = 0.051
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265
N L + R F LE L L +N++ +L + TL+ L L ND++
Sbjct: 305 NHLLHVERNQPQFDRLE------NLYLDHNSI--VTLKLSTH--HTLKNLTLSHNDWD 352
Score = 31.2 bits (71), Expect = 0.47
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNL 55
+ + L HN + + L+ LTL +N + ++ + + +
Sbjct: 320 LENLYLDHNSIVTLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 106 bits (266), Expect = 1e-25
Identities = 60/300 (20%), Positives = 94/300 (31%), Gaps = 30/300 (10%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNLGMNRL 60
+ + LS N + E+ + L +L+ L + + + L L IL L N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 61 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI--G 116
L G F LEVL LT NL+ L GNFF L +L L L DN+ + +
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 117 NLKNLQI--------------ILETFLPDMMEKNRGHIVGISSM--AGIVGLPNLVPYCA 160
N++ + L F R + + M + P+
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAF 220
+ L +E I T I ++ F
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN--FTF 269
Query: 221 PVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
LEA DL+ + + +L F L L L N+ + L +L
Sbjct: 270 KGLEASG-VKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Score = 90.6 bits (225), Expect = 2e-20
Identities = 56/294 (19%), Positives = 100/294 (34%), Gaps = 45/294 (15%)
Query: 5 TRITLSHNKLKE--IPPGL-ANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNR 59
+TL+ L + L +LE+L L +N I+ + + ++ + +L+L N+
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165
Query: 60 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP---------GNFFMLETLRALYLGDNDFE 109
+ S+ F L +++ Q + GN F ++ L L N F+
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Query: 110 VLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
A+ + I L + + F +GL
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNM-------------GSSFGHTNFKDPDNFTFKGL 272
Query: 169 MEALAEELREDARNSKIKFTSIFP--FMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAF 226
+ + D SKI ++ F T L + + N ++ + AF L
Sbjct: 273 EASGVKTC--DLSKSKI--FALLKSVFSHFTDL-EQLTLAQNEINKIDDN--AFWGLTHL 325
Query: 227 SFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
L+L+ N L S+ F L+ L L L N L + L NL+
Sbjct: 326 ---LKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374
Score = 86.7 bits (215), Expect = 5e-19
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
++TL+ N++ +I L +L L L N + ++ + +L KL +L+L N + +
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 108
L F P L+ L L N L +S+P F L +L+ ++L N +
Sbjct: 362 LGDQSFLGLPNLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPW 407
Score = 74.4 bits (183), Expect = 6e-15
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 9/127 (7%)
Query: 3 YITRITLSHNKLKEIPPGL---ANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMN 58
Y + H K+ ++ L ++I L + S L L L N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
Query: 59 RLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI- 115
++ + F L L+L+ N L S+ F L+ L L L N L +
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367
Query: 116 GNLKNLQ 122
L NL+
Sbjct: 368 LGLPNLK 374
Score = 70.9 bits (174), Expect = 8e-14
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
++ LS N L I + NL LE+L L N I L S LP L+ L L N+L S
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385
Query: 63 LPRG-FGAFPVLEVLDLTYNNLN 84
+P G F L+ + L N +
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWD 408
Score = 68.2 bits (167), Expect = 8e-13
Identities = 50/305 (16%), Positives = 87/305 (28%), Gaps = 54/305 (17%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS-SLPRG- 66
+ L ++P A++ ++ L N I L TS S L L+ L + +
Sbjct: 18 INRGLHQVPELPAHVNYVD---LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFE--VLPAEI-GNLKNLQ 122
F L +L L YN L F L L L L + + VL L +L+
Sbjct: 75 FRGLSSLIILKLDYNQF--LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132
Query: 123 II------LETFLPDMMEKNRGHIVGIS-SMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
++ ++ P N + + + + L
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL------- 185
Query: 176 LREDARNSKIKFTSIFPFMVDTGLCKNPK---------IKMNRLSSLPRGFGAFPVLEAF 226
R S I + + + C NP + N F A
Sbjct: 186 -----RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA--KRFFDAIAG 238
Query: 227 SFTTILDLTYNNLNEQSLPGN---------FFMLET--LRALYLGDNDFEVLPAEI-GNL 274
+ L L+ + S F LE ++ L + L + +
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298
Query: 275 KNLQI 279
+L+
Sbjct: 299 TDLEQ 303
Score = 53.6 bits (129), Expect = 4e-08
Identities = 47/295 (15%), Positives = 93/295 (31%), Gaps = 77/295 (26%)
Query: 4 ITRITLSHNKLKEIPPG-LANLV--NLEILTLFNNQIETLPT---------SLSSLPKLR 51
+ L+ NK+K I L N + +L L + ++ + + +
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215
Query: 52 ILNLGMNRLSSLPRG--FGAFPVLEVLDLTYNNL----------NEQSLPGNFFM---LE 96
L+L N F A ++ L +N N + F
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275
Query: 97 TLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV--GLP 153
++ L + L + + +L+ + + +N I+ + GL
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLT-------LAQNE-----INKIDDNAFWGLT 323
Query: 154 NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMN--RLS 211
+L +L + + + SI M + L K + ++ +
Sbjct: 324 HL------------------LKL--NLSQNFL--GSIDSRMFE-NLDKLEVLDLSYNHIR 360
Query: 212 SLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 264
+L F P L L L N L +S+P F L +L+ ++L N +
Sbjct: 361 ALGDQSFLGLPNL------KELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPW 407
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 106 bits (266), Expect = 2e-25
Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 35/282 (12%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
+T ++ ++++P L + +E+L L + QIE + T + + ++ L +G N +
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNL 118
LP F P+L VL L N+L SLP F L L + +N+ E + +
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170
Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
+LQ + + NR V +S + + N+ S A+ +E L
Sbjct: 171 TSLQNL-------QLSSNRLTHVDLSLIPSLFHA-NVSYNLLSTLAIPIAVEEL------ 216
Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
DA ++ I ++ V+ L K++ N L+ +P L +DL+YN
Sbjct: 217 DASHNSI---NVVRGPVNVEL-TILKLQHNNLTDTA-WLLNYPGLV------EVDLSYNE 265
Query: 239 LNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L + + + F+ ++ L LY+ +N L + L++
Sbjct: 266 L--EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 305
Score = 103 bits (258), Expect = 2e-24
Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 64/283 (22%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
T + L N L +P G+ N L L++ NN +E + + + L+ L L NRL+
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
+ P L +++YN L +L + L N V+ + L
Sbjct: 186 VD--LSLIPSLFHANVSYNLL--STLAIPIA----VEELDASHNSINVVRGPV--NVELT 235
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
I+ ++ N ++ A ++ P L E+ D
Sbjct: 236 ILK-------LQHNN-----LTDTAWLLNYPGL------------------VEV--DLSY 263
Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYN 237
++++ PF + +++ NRL +L P L+ +LDL++N
Sbjct: 264 NELEKIMYHPF---VKM---QRLERLYISNNRLVALNLYGQPIPTLK------VLDLSHN 311
Query: 238 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
+L + N + L LYL N L LKNL +
Sbjct: 312 HL--LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 352
Score = 94.2 bits (234), Expect = 2e-21
Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 36/278 (12%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPR 65
I + + + L N +I+T N+ + LP + L S ++ +LNL ++ +
Sbjct: 34 IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 92
Query: 66 G-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
F ++ L + +N + + LP + F + L L L ND LP I N L
Sbjct: 93 YAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DAR 181
+ M N + I +L S + + +L L +
Sbjct: 151 TLS-------MSNNN--LERIEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200
Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241
+ + +I + + N ++ + TIL L +NNL +
Sbjct: 201 YNLLSTLAIPIAV------EELDASHNSINVVRGP--------VNVELTILKLQHNNLTD 246
Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
L + L N+ E + ++ L+
Sbjct: 247 ---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281
Score = 90.4 bits (224), Expect = 4e-20
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ LS+N+L++I + LE L + NN++ L +P L++L+L N L +
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
R F LE L L +N++ +L + TL+ L L ND++
Sbjct: 317 ERNQPQFDRLENLYLDHNSI--VTLKLSTH--HTLKNLTLSHNDWD 358
Score = 35.3 bits (81), Expect = 0.027
Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 195 VDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LET 253
+D+ L + + + + I+ + + + LP
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQ 76
Query: 254 LRALYLGDNDFEVLPAEI-GNLKNLQ 278
+ L L D E + +Q
Sbjct: 77 VELLNLNDLQIEEIDTYAFAYAHTIQ 102
Score = 31.1 bits (70), Expect = 0.61
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIET--LPTSLSSLPKLRILNL 55
+ + L HN + + L+ LTL +N + L ++ + + +
Sbjct: 326 LENLYLDHNSIVTLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 377
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 106 bits (265), Expect = 2e-25
Identities = 63/289 (21%), Positives = 96/289 (33%), Gaps = 65/289 (22%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
IT + + N L +P L LE + NQ+ +LP L +L I + + L +L
Sbjct: 63 ITTLVIPDNNLTSLPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 119
Query: 64 PRG----------FGAFPV----LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
P G + PV L+ L ++ N L SLP L L+ +N
Sbjct: 120 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA--SLPALPSELCK---LWAYNNQLT 174
Query: 110 VLPAEIGNLKNL-----QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 164
LP L+ L Q+ LP L L Y +
Sbjct: 175 SLPMLPSGLQELSVSDNQL---ASLPT----------------LPSELYKLWAYNNRLTS 215
Query: 165 VRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLE 224
+ L L +EL +++ TS+ + L K + NRL+SLP
Sbjct: 216 LPALPSGL-KEL--IVSGNRL--TSLPVLP--SEL-KELMVSGNRLTSLPMLPSGL---- 263
Query: 225 AFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 273
L + N L LP + L + + L N +
Sbjct: 264 -----LSLSVYRNQL--TRLPESLIHLSSETTVNLEGNPLSERTLQALR 305
Score = 93.4 bits (232), Expect = 4e-21
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ + + L +P L ++ L + +N + +LP + P+LR L + N+L+SLP
Sbjct: 43 AVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSLP 97
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L + +L +LP L L++ N LP L+ L +
Sbjct: 98 VLPPGLLELSIFSNPLTHL--PALPSG------LCKLWIFGNQLTSLPVLPPGLQELSV 148
Score = 70.7 bits (173), Expect = 2e-13
Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 7/121 (5%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ +S N+L +P + L L+++ NQ+ LP SL L +NL N LS
Sbjct: 244 KELMVSGNRLTSLPMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300
Query: 65 RGFGAFPVLEVLD---LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
+ ++ S P L A +L E PA
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR-EGEPAPADRWHMF 359
Query: 122 Q 122
Sbjct: 360 G 360
Score = 63.0 bits (153), Expect = 5e-11
Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 42/208 (20%)
Query: 73 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDM 132
VL++ + L +LP + L + DN+ LPA L+ L++
Sbjct: 42 NAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEV--------- 88
Query: 133 MEKNRGHIVGISSM-AGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
N+ ++S+ GL L + + L L +L + TS+
Sbjct: 89 -SGNQ-----LTSLPVLPPGLLELSIFSNPLTHLPALPSGL-CKLW----IFGNQLTSLP 137
Query: 192 PFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFML 251
+ + N+L+SLP L N L SLP
Sbjct: 138 VLP---PGLQELSVSDNQLASLPALPSEL---------CKLWAYNNQL--TSLPML---P 180
Query: 252 ETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L+ L + DN LP L L
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWA 208
Score = 59.9 bits (145), Expect = 5e-10
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 34 NNQIETLPTSLSS--LPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGN 91
+ + + + +LN+G + L++LP A + L + NNL SLP
Sbjct: 24 SRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLT--SLPAL 79
Query: 92 FFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
LR L + N LP L L I
Sbjct: 80 ---PPELRTLEVSGNQLTSLPVLPPGLLELSI 108
Score = 43.7 bits (103), Expect = 6e-05
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
NRL+SLP L ++ N L SLP L +L + N L
Sbjct: 231 NRLTSLPVLPSEL---------KELMVSGNRL--TSLPML---PSGLLSLSVYRNQLTRL 276
Query: 268 PAEIGNLKNLQ 278
P + +L +
Sbjct: 277 PESLIHLSSET 287
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 104 bits (261), Expect = 5e-25
Identities = 43/277 (15%), Positives = 92/277 (33%), Gaps = 52/277 (18%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSS 62
++ + LK+ + N++ L L N + + L+ KL +LNL N L
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG-NLKNL 121
+ L LDL N + E + ++ L+ +N+ + G KN+
Sbjct: 73 TL-DLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVSCSRGQGKKNI 125
Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
+ N+ I + + + + L D +
Sbjct: 126 Y----------LANNK--ITMLRDLD-EGCRSRV------------------QYL--DLK 152
Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241
++I + + ++ ++ N + + F L+ LDL+ N L
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLK------TLDLSSNKL-- 203
Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+ F + + L +N ++ + +NL+
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240
Score = 93.4 bits (232), Expect = 3e-21
Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 27/289 (9%)
Query: 4 ITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS 61
+ + L N++ + A+ LE L L N I + KL+ L+L N+L+
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLA 204
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
+ F + + + L N L + + L L N F KN
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262
Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
+ ++T ++K G ++ + L+ +
Sbjct: 263 R--VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK------E 314
Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
++ + ++ + + + ++ +A L+
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTVID--QVTLRKQA---KITLEQKK 369
Query: 237 NNLNEQSLPGNFFMLETLRALY---LGDNDFEVLPAEIGNLKNLQIMLE 282
L+EQ + L +G + + E L+ L+ +++
Sbjct: 370 KALDEQ-VSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417
Score = 87.2 bits (216), Expect = 4e-19
Identities = 52/312 (16%), Positives = 90/312 (28%), Gaps = 50/312 (16%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-----------------SLSSLPKLR 51
LS N L E L +L L L L NN ++ L S S +
Sbjct: 65 LSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123
Query: 52 ILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 110
+ L N+++ L G ++ LDL N ++ + +TL L L N
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183
Query: 111 LPAEIGNLKNLQII-LE----TFLPDMMEKNRG---------HIVGISSMAGIVGLPNLV 156
+ ++ L+ + L F+ + G +V I + NL
Sbjct: 184 VKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNL- 239
Query: 157 PYCASKFAVRG-------LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNR 209
F +RG L + ++ R + + +
Sbjct: 240 ----EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295
Query: 210 LSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 269
LP F L A L+ + L R + + +
Sbjct: 296 CEDLPAPF--ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353
Query: 270 EIGNLKNLQIML 281
++ K +I L
Sbjct: 354 QVTLRKQAKITL 365
Score = 70.6 bits (173), Expect = 1e-13
Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 50/241 (20%)
Query: 40 LPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL 98
+ + + +I + + L + ++ LDL+ N L Q + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKL 60
Query: 99 RALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158
L L N ++ +L L+ + + N + ++ P++
Sbjct: 61 ELLNLSSNVLYETL-DLESLSTLRTL-------DLNNNY-----VQE---LLVGPSI--- 101
Query: 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-F 217
E L A N+ I S G KN + N+++ L
Sbjct: 102 ---------------ETL--HAANNNISRVSCSRG---QGK-KNIYLANNKITMLRDLDE 140
Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 277
G + LDL N ++ + +TL L L N + ++ L
Sbjct: 141 GCRSRV------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKL 193
Query: 278 Q 278
+
Sbjct: 194 K 194
Score = 53.7 bits (129), Expect = 4e-08
Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 11/138 (7%)
Query: 9 LSHNKLKEIPPGLA------NLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
+++P A +L+ ++ E L + + R ++ + +
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY---LGDNDFEVLPAEIGNL 118
+ L+ L+EQ + L +G + + E L
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQ-VSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409
Query: 119 KNLQIILETFLPDMMEKN 136
+ L+ I++ + +E+
Sbjct: 410 QLLRAIVKRYEEMYVEQQ 427
Score = 45.2 bits (107), Expect = 2e-05
Identities = 23/210 (10%), Positives = 52/210 (24%), Gaps = 76/210 (36%)
Query: 73 LEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLP 130
++ +T ++L + + ++ L L N + A + L+++
Sbjct: 12 YKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL------ 63
Query: 131 DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSI 190
+ N + + L L L
Sbjct: 64 -NLSSNV-----LYETLDLESLSTL------------------RTLD------------- 86
Query: 191 FPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM 250
+ N + L G L NN++ + +
Sbjct: 87 --------------LNNNYVQELLVG----------PSIETLHAANNNIS--RVSCSRGQ 120
Query: 251 LETLRALYLGDNDFEVLPA-EIGNLKNLQI 279
+ +YL +N +L + G +Q
Sbjct: 121 G--KKNIYLANNKITMLRDLDEGCRSRVQY 148
Score = 37.5 bits (87), Expect = 0.006
Identities = 21/217 (9%), Positives = 50/217 (23%), Gaps = 70/217 (32%)
Query: 87 SLPGNFFMLETLRALYLGDNDFEVLPAEIG-NLKNLQII------LETFLPDMMEK---- 135
++ + + D+ + A + + N++ + L +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 136 -------NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
N + + L L L D N+ +
Sbjct: 61 ELLNLSSNV-----LYETLDLESLSTL------------------RTL--DLNNNYV--- 92
Query: 189 SIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
L P I+ N +S + + L N +
Sbjct: 93 --------QELLVGPSIETLHAANNNISRVS--------CSRGQGKKNIYLANNKITMLR 136
Query: 244 LPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNLQ 278
+ ++ L L N+ + + + L+
Sbjct: 137 -DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 100 bits (252), Expect = 1e-24
Identities = 58/270 (21%), Positives = 89/270 (32%), Gaps = 48/270 (17%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGMNR 59
TR+ L NKL+ +P G L L L+L +N + S L+ L+L N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 60 LSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNL 118
+ ++ F LE LD ++NL + S F L L L + V I L
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
+L+++ M N L NL L
Sbjct: 150 SSLEVL-------KMAGNS-FQENFLPDI-FTELRNL------------------TFL-- 180
Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
D +++ S F L + M N SL + L + +LD +
Sbjct: 181 DLSQCQLEQLSPTAF---NSLSSLQVLNMSHNNFFSLDT--FPYKCLNSL---QVLDYSL 232
Query: 237 NNLNEQSLPGNFF--MLETLRALYLGDNDF 264
N++ + +L L L NDF
Sbjct: 233 NHI--MTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 80.1 bits (198), Expect = 3e-17
Identities = 48/249 (19%), Positives = 76/249 (30%), Gaps = 66/249 (26%)
Query: 34 NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSL-PGN 91
+ + ++PT + L L N+L SLP G F L L L+ N L+ + +
Sbjct: 16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73
Query: 92 FFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG 151
F +L+ L L N + + L+ L+ + + + + +S + +
Sbjct: 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL-------DFQHSN--LKQMSEFSVFLS 124
Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS 211
L NL L I
Sbjct: 125 LRNL------------------IYLD---------------------------ISHTHTR 139
Query: 212 SLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 270
G F LE +L + N+ E LP F L L L L E L
Sbjct: 140 VAFNGIFNGLSSLE------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 271 I-GNLKNLQ 278
+L +LQ
Sbjct: 194 AFNSLSSLQ 202
Score = 45.0 bits (107), Expect = 1e-05
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
N + ++ F LE LD ++NL + S F L L L + V
Sbjct: 88 NGVITMSSNFLGLEQLE------HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141
Query: 268 PAEI-GNLKNLQI 279
I L +L++
Sbjct: 142 FNGIFNGLSSLEV 154
Score = 38.5 bits (90), Expect = 0.002
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
L+S+P G S T L+L N L QSLP F L L L L N
Sbjct: 17 KGLTSVPTGI--------PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 267 LPAEIG---NLKNLQI 279
+L+
Sbjct: 67 KGCCSQSDFGTTSLKY 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 103 bits (258), Expect = 2e-24
Identities = 59/300 (19%), Positives = 101/300 (33%), Gaps = 33/300 (11%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNLGMNRL 60
R+ LS N ++ + L L++L L + + +LP LRIL+LG +++
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85
Query: 61 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE--IG 116
L F L L L + L++ L +F L+ L L L N L G
Sbjct: 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145
Query: 117 NLKNLQIIL-----------ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
L +L+ I P + +++ + + C + F
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS--FFSLAANSLYSRVSVDWGKCMNPFRN 203
Query: 166 RGLME-----ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAF 220
L ++ I + F ++ + + + + F
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI-MGAGFGFHNIKDPDQ--NTF 260
Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
L S LDL++ + SL F L+ L+ L L N + E L NLQ
Sbjct: 261 AGLARSSVRH-LDLSHGFV--FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Score = 102 bits (257), Expect = 4e-24
Identities = 60/298 (20%), Positives = 102/298 (34%), Gaps = 50/298 (16%)
Query: 2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNR 59
+ + LSH + + L +L++L L N+I + + L L++LNL N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 60 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNL 118
L L F P + +DL N++ F LE L+ L L DN + I ++
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTTIHF-IPSI 383
Query: 119 KNL--------QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
++ + +++ + + + + ++ +P+L
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL--------------- 428
Query: 171 ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPK------IKMNRLSSLPRGFGAFPVLE 224
+ L ++ S + N L + V E
Sbjct: 429 ---QIL--ILNQNRFSSCS------GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 225 AFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI--GNLKNLQI 279
S +L L +N L SLP F L LR L L N VL NL+ L I
Sbjct: 478 GLSHLQVLYLNHNYL--NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDI 533
Score = 93.3 bits (232), Expect = 5e-21
Identities = 61/289 (21%), Positives = 108/289 (37%), Gaps = 35/289 (12%)
Query: 3 YITRITLSHNKLKEIPPG-LANLV--NLEILTLFNNQIETL-PTSLSSLPKLRILNLGMN 58
+I + +K+ A L ++ L L + + +L +L L++LNL N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 59 RLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
+++ + F L+VL+L+YN L E NF+ L + + L N ++ +
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
L+ LQ + + N + I +P++ S + L +
Sbjct: 360 FLEKLQTL-------DLRDNA--------LTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404
Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG--FGAFPVLEAFSFTTILDL 234
++++ I F++ + + NR SS P LE L L
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE------QLFL 458
Query: 235 TYNNL---NEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
N L E L + F L L+ LYL N LP + +L L+
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Score = 75.6 bits (186), Expect = 4e-15
Identities = 56/297 (18%), Positives = 97/297 (32%), Gaps = 52/297 (17%)
Query: 5 TRITLSHNKLKE--IPPG-LANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNR 59
+ L L + + G NL L L L NQI +L S L L+ ++ N+
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159
Query: 60 LSSLPRGFGAFPVLEVLDLTYNNLNEQSL----------PGNFFMLETLRALYLGDNDFE 109
+ + L+ L++ +L SL N F L L + N +
Sbjct: 160 IFLVCEH--ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217
Query: 110 VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLM 169
V GN N + F + G G ++ + GL
Sbjct: 218 VDIT--GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP-----------DQNTFAGLA 264
Query: 170 EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVL 223
+ L S S+ + +K+ N+++ + F L
Sbjct: 265 RSSVRHLDL----SHGFVFSLNSRV----FETLKDLKVLNLAYNKINKIADEAFYGLDNL 316
Query: 224 EAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
+ +L+L+YN L E NF+ L + + L N ++ + L+ LQ
Sbjct: 317 Q------VLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Score = 73.3 bits (180), Expect = 3e-14
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 14/139 (10%)
Query: 1 MLYITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPTS------LSSLPKLRI 52
+ ++ + L+ N+ + +LE L L N ++ + L L++
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 53 LNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 111
L L N L+SLP G F L L L N L L N L L + N
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDL-PANLEILDISRNQLLAP 541
Query: 112 PAEIGNLKNLQIILETFLP 130
++ +L ++ T
Sbjct: 542 NPDV--FVSLSVLDITHNK 558
Score = 69.4 bits (170), Expect = 4e-13
Identities = 54/300 (18%), Positives = 98/300 (32%), Gaps = 65/300 (21%)
Query: 4 ITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSL--PKLRILNLGMN 58
+TR+ LS N+++ + L +L+ + +NQI + L L L +L N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 59 RLSSL-PRGFGAFP------VLEVLDLTYNNLN-----------EQSLPGNFFMLETLRA 100
L S +G VLE+LD++ N +S + + +
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 101 LYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159
G ++ + L + D+ + G + ++S L +L
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSS--VRHL--DL---SHGFVFSLNSRV-FETLKDL---- 292
Query: 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FG 218
+ L + +KI + F L + + N L L F
Sbjct: 293 --------------KVL--NLAYNKINKIADEAFYGLDNL-QVLNLSYNLLGELYSSNFY 335
Query: 219 AFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
P + +DL N++ F LE L+ L L DN I + ++
Sbjct: 336 GLPKVA------YIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALT----TIHFIPSIP 384
Score = 61.7 bits (150), Expect = 1e-10
Identities = 34/233 (14%), Positives = 63/233 (27%), Gaps = 36/233 (15%)
Query: 34 NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNF 92
+ +P L L L N + ++ F L++L+L F
Sbjct: 13 FCNLTQVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 93 FMLETLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG 151
L LR L LG + L + L +L + + +
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR-------LYFCGLSDAVLKDGY-FRN 121
Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS 211
L L L D ++I+ + P K+ N++
Sbjct: 122 LKAL------------------TRL--DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
Query: 212 SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 264
+ L+ + + L N+L + + R + L D
Sbjct: 162 LVCE--HELEPLQGKTLSF-FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211
Score = 56.4 bits (136), Expect = 6e-09
Identities = 44/311 (14%), Positives = 89/311 (28%), Gaps = 81/311 (26%)
Query: 1 MLYITRITLSHNKLKEIPPG-LANL--VNLEILTLFNNQIETLP-------TSLSSLPKL 50
+ + I S N++ + L L L +L N + + + L
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206
Query: 51 RILNLGMNRLSSLPRG-------------FGAFPVLEVLDLTYNNLNEQSLPGNFFM--- 94
IL++ N + G + ++N+ + N F
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI--KDPDQNTFAGLA 264
Query: 95 LETLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP 153
++R L L L + + LK+L+++ + N I I+ A GL
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN-------LAYN--KINKIADEA-FYGLD 314
Query: 154 NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----N 208
NL + L + + + ++ PK+ N
Sbjct: 315 NL------------------QVL--NLSYNLL--GELYSSN----FYGLPKVAYIDLQKN 348
Query: 209 RLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 268
++ + + LDL N L + ++ ++L N LP
Sbjct: 349 HIAIIQDQ-----TFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVTLP 397
Query: 269 AEIGNLKNLQI 279
+ +
Sbjct: 398 KINLTANLIHL 408
Score = 42.5 bits (100), Expect = 2e-04
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 14/78 (17%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFT---TILDLTYNNLNEQSLPGNFFM-LETLRALYLGDND 263
+++ L AF L L + L++ L +F L+ L L L N
Sbjct: 83 SKIYFLHPD--------AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 264 FEVLPAE--IGNLKNLQI 279
L G L +L+
Sbjct: 135 IRSLYLHPSFGKLNSLKS 152
Score = 40.2 bits (94), Expect = 0.001
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 208 NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 266
N + ++ F L+ +L+L F L LR L LG +
Sbjct: 34 NYIRTVTASSFPFLEQLQ------LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87
Query: 267 LPAEI-GNLKNLQI 279
L + L +L
Sbjct: 88 LHPDAFQGLFHLFE 101
Score = 34.4 bits (79), Expect = 0.066
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDND--FE 265
L+ +P+ + T L L++N + + +F LE L+ L LG
Sbjct: 14 CNLTQVPQVL---------NTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLT 63
Query: 266 VLPAEIGNLKNLQI 279
+ NL NL+I
Sbjct: 64 IDKEAFRNLPNLRI 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 101 bits (254), Expect = 3e-24
Identities = 61/269 (22%), Positives = 101/269 (37%), Gaps = 55/269 (20%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
+ L N+++ I +L +LEIL L N I T+ + + L L L L NRL+
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGD-NDFEVLPAEI-GN 117
++P G F L+ L L N + +S+P F + +LR L LG+ +
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
L NL+ + + + + + L L +EL
Sbjct: 184 LSNLRYL-------NLAMCN-----LREIPNLTPLIKL------------------DEL- 212
Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRG-FGAFPVLEAFSFTTILDL 234
D + + F GL K+ M +++ + R F L ++L
Sbjct: 213 -DLSGNHLSAIRPGSF---QGLMHLQKLWMIQSQIQVIERNAFDNLQSLV------EINL 262
Query: 235 TYNNLNEQSLPGNFF-MLETLRALYLGDN 262
+NNL LP + F L L ++L N
Sbjct: 263 AHNNL--TLLPHDLFTPLHHLERIHLHHN 289
Score = 97.1 bits (242), Expect = 1e-22
Identities = 66/280 (23%), Positives = 109/280 (38%), Gaps = 49/280 (17%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSL 63
+++ L+E+P G+ N +L L NQI+ + S L L IL L N + ++
Sbjct: 46 SKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
G F L L+L N L ++P G F L L+ L+L +N E +P+ + +
Sbjct: 104 EIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
L+ + D+ E R + IS A GL NL L
Sbjct: 162 LRRL------DLGELKR--LSYISEGA-FEGLSNL------------------RYLNLA- 193
Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLN 240
I L + N LS++ G+F L L + + +
Sbjct: 194 MC---NLREIPNLTPLIKL-DELDLSGNHLSAIRP--GSFQGLMH---LQKLWMIQSQI- 243
Query: 241 EQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
Q + N F L++L + L N+ +LP ++ L +L+
Sbjct: 244 -QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282
Score = 73.2 bits (180), Expect = 2e-14
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
+ LS N L I PG L++L+ L + +QI+ + + +L L +NL N L+
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269
Query: 63 LPRG-FGAFPVLEVLDLTYNNLN 84
LP F LE + L +N N
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292
Score = 51.3 bits (123), Expect = 2e-07
Identities = 44/235 (18%), Positives = 65/235 (27%), Gaps = 71/235 (30%)
Query: 48 PKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDN 106
+ + L +P G +L+L N + Q + N F L L L L N
Sbjct: 43 NQFSKVICVRKNLREVPDGI--STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRN 98
Query: 107 DFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
+ L NL + + NR + I + A V L L
Sbjct: 99 HIRTIEIGAFNGLANLNTL-------ELFDNR--LTTIPNGA-FVYLSKL---------- 138
Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLE 224
+EL ++ N + S+P F P L
Sbjct: 139 --------KELW---------------------------LRNNPIESIPSYAFNRIPSLR 163
Query: 225 AFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQ 278
LDL + F L LR L L + +P + L L
Sbjct: 164 ------RLDLGELKRL-SYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLD 210
Score = 40.9 bits (96), Expect = 5e-04
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N + ++ G AF L L+L N L ++P G F L L+ L+L +N E
Sbjct: 98 NHIRTIEIG--AFNGLANL---NTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIES 150
Query: 267 LPAEI-GNLKNLQI 279
+P+ + +L+
Sbjct: 151 IPSYAFNRIPSLRR 164
Score = 39.3 bits (92), Expect = 0.001
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
L +P G + T +L+L N + Q + N F L L L L N
Sbjct: 53 KNLREVPDGI--------STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 267 LPAEI-GNLKNLQI 279
+ L NL
Sbjct: 103 IEIGAFNGLANLNT 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 99 bits (250), Expect = 6e-24
Identities = 48/281 (17%), Positives = 91/281 (32%), Gaps = 60/281 (21%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + L+ + + +I P LANL + L L N + + LS++ L L + +++ +
Sbjct: 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L L YN + + S L +L N + + N+ L
Sbjct: 171 T-PIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQITDITP-VANMTRLNS 225
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+ + N+ I+ ++ + L L L + +
Sbjct: 226 L-------KIGNNK-----ITDLSPLANLSQL------------------TWL--EIGTN 253
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
+I + I + K+KM N++S + L L L N
Sbjct: 254 QI--SDI------NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLN------SLFLNNNQ 298
Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L L L L+L N + + +L +
Sbjct: 299 LGN-EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDS 337
Score = 98.0 bits (245), Expect = 2e-23
Identities = 57/281 (20%), Positives = 99/281 (35%), Gaps = 62/281 (22%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+T + + NK+ +I L NL NL L L + I + L++L K+ LNLG N S
Sbjct: 90 LTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSD 147
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L +T + + + + L L +L L N E + + +L +L
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISP-LASLTSLHY 203
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
N+ I+ + + + L L N+
Sbjct: 204 F-------TAYVNQ-----ITDITPVANMTRL------------------NSL--KIGNN 231
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
KI T + + L ++ N++S + L +L++ N
Sbjct: 232 KI--TDL------SPLANLSQLTWLEIGTNQISDIN-AVKDLTKL------KMLNVGSNQ 276
Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 278
+++ L L +L+L +N E IG L NL
Sbjct: 277 ISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314
Score = 93.4 bits (233), Expect = 1e-21
Identities = 57/284 (20%), Positives = 106/284 (37%), Gaps = 46/284 (16%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
IT++ ++ K+ I + L NLE L L NQI + LS+L KL L +G N+++ +
Sbjct: 46 ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDI 103
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L L +N+++ S L + +L LG N + + N+ L
Sbjct: 104 S-ALQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAE--ELRE-DA 180
+ + +++ + + I L +L + + + LA L A
Sbjct: 160 LT-------VTESK-----VKDVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTA 206
Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLT 235
++I T I T + ++ N+++ L L L++
Sbjct: 207 YVNQI--TDI------TPVANMTRLNSLKIGNNKITDLS-PLANLSQLT------WLEIG 251
Query: 236 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
N + + L L+ L +G N + + NL L
Sbjct: 252 TNQI--SDINA-VKDLTKLKMLNVGSNQISDISV-LNNLSQLNS 291
Score = 88.0 bits (219), Expect = 1e-19
Identities = 39/280 (13%), Positives = 85/280 (30%), Gaps = 62/280 (22%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
R L + ++ L ++ L + ++ ++ + L L LNL N+++ +
Sbjct: 24 GIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDI 81
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L + N + + L LR LYL +++ + + NL +
Sbjct: 82 S-PLSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+ + N +S ++ + + L L S
Sbjct: 137 L-------NLGANH----NLSDLSPLSNMTGL------------------NYL--TVTES 165
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
K+ + P + N++ + + L N
Sbjct: 166 KV--KDVTPI------ANLTDLYSLSLNYNQIEDIS-PLASLTSLH------YFTAYVNQ 210
Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+ + + + L +L +G+N L + NL L
Sbjct: 211 ITDIT---PVANMTRLNSLKIGNNKITDLSP-LANLSQLT 246
Score = 85.3 bits (212), Expect = 7e-19
Identities = 45/280 (16%), Positives = 84/280 (30%), Gaps = 62/280 (22%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ + +I P A+L L + + T L + L + +++S+
Sbjct: 3 ATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQ 60
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
G LE L+L N + + S L L LY+G N + A + NL NL+ +
Sbjct: 61 -GIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKITDISA-LQNLTNLREL 115
Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
+ ++ IS ++ + L + L N
Sbjct: 116 Y-------LNEDN-----ISDISPLANLTKM------------------YSL-NLGANHN 144
Query: 185 IKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
+ S L + +++ + L L L YN +
Sbjct: 145 LSDLS--------PLSNMTGLNYLTVTESKVKDVT-PIANLTDL------YSLSLNYNQI 189
Query: 240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
+ S L +L N + + N+ L
Sbjct: 190 EDIS---PLASLTSLHYFTAYVNQITDITP-VANMTRLNS 225
Score = 80.3 bits (199), Expect = 4e-17
Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 74/259 (28%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+T++ +K+K++ P +ANL +L L+L NQIE + L+SL L +N+++ +
Sbjct: 158 NYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDIT 215
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
L L + N + + S L L L +G N + A + +L L+++
Sbjct: 216 -PVANMTRLNSLKIGNNKITDLS---PLANLSQLTWLEIGTNQISDINA-VKDLTKLKML 270
Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
+ N+ IS ++ + L L L
Sbjct: 271 -------NVGSNQ-----ISDISVLNNLSQL------------------NSLF------- 293
Query: 185 IKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
+ N+L + G L T L L+ N++
Sbjct: 294 --------------------LNNNQLGNEDMEVIGGLTNL------TTLFLSQNHI--TD 325
Query: 244 LPGNFFMLETLRALYLGDN 262
+ L + + +
Sbjct: 326 IR-PLASLSKMDSADFANQ 343
Score = 65.6 bits (161), Expect = 4e-12
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSL 63
+ + N++ +I L NL L L L NNQ+ + L L L L N ++ +
Sbjct: 268 KMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 64 PRGFGAFPVLEVLDLTYNNLNE 85
+ ++ D + +
Sbjct: 327 R-PLASLSKMDSADFANQVIKK 347
Score = 35.6 bits (83), Expect = 0.021
Identities = 30/207 (14%), Positives = 57/207 (27%), Gaps = 72/207 (34%)
Query: 73 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDM 132
L +N+ + L L + L+++ + +
Sbjct: 2 AATLATLPAPINQIFPDAD---LAEGIRAVLQKASVTDVVT-QEELESITKL-------V 50
Query: 133 MEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFP 192
+ + ++S+ GI L NL E L + ++I T I P
Sbjct: 51 VAGEK-----VASIQGIEYLTNL------------------EYL--NLNGNQI--TDISP 83
Query: 193 FMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLE 252
+ L L T L + N + + L
Sbjct: 84 L--------------SNLVKL----------------TNLYIGTNKITD---ISALQNLT 110
Query: 253 TLRALYLGDNDFEVLPAEIGNLKNLQI 279
LR LYL +++ + + NL +
Sbjct: 111 NLRELYLNEDNISDISP-LANLTKMYS 136
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 101 bits (253), Expect = 9e-24
Identities = 37/291 (12%), Positives = 98/291 (33%), Gaps = 29/291 (9%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG 66
L +++ I +L +LE L L +N + +L +S L L+ LNL N +L
Sbjct: 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116
Query: 67 --FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 123
F L+ L + + +F L +L L + ++ + +++++
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE----- 178
+ + + + + + L + + + E
Sbjct: 177 L-------TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229
Query: 179 -----DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILD 233
S + + ++++ + +N L V+ +
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--PSESDVVSELGKVETVT 287
Query: 234 LTYNNLNE----QSLPGNFFMLETLRALYLGDNDFEVLPAEIG-NLKNLQI 279
+ ++ + L + +LE ++ + + ++ ++P +LK+L+
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338
Score = 92.5 bits (230), Expect = 8e-21
Identities = 48/303 (15%), Positives = 96/303 (31%), Gaps = 44/303 (14%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLG-MNRL 60
+ LS N L + L +L+ L L N +TL + +L L+ L +G +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 61 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-L 118
S + R F L L++ +L + + + L L ++ L + L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195
Query: 119 KNLQII-----------------LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161
+++ + E P RG ++ S ++ L + +
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAF 220
+ L D S+ S + + + I L +
Sbjct: 256 VEFDDCTLNGL-----GDFNPSESDVVSELGKVETVTIRRL-HIPQFYLFYDLSTVYSLL 309
Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVL----PAEIGNLK 275
++ + + + + +P +F L++L L L +N A G
Sbjct: 310 EKVK------RITVENSKV--FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361
Query: 276 NLQ 278
+LQ
Sbjct: 362 SLQ 364
Score = 90.9 bits (226), Expect = 3e-20
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL----PTSLSSLPKLRILNLGMN 58
+ RIT+ ++K+ +P +L +LE L L N + + P L+ L L N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Query: 59 RLSSLPRGFGAF---PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI 115
L S+ + L LD++ N +P + E +R L L V+ I
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429
Query: 116 GNLKNLQII 124
+ L+++
Sbjct: 430 --PQTLEVL 436
Score = 87.9 bits (218), Expect = 3e-19
Identities = 59/307 (19%), Positives = 112/307 (36%), Gaps = 40/307 (13%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG- 66
IP GL ++ L L N+I + L + L++L L +R++++
Sbjct: 12 GRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLP--AEIGNLKNLQI 123
F + LE LDL+ N+L SL ++F L +L+ L L N ++ L + NL NLQ
Sbjct: 70 FYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 124 ILETFLPDMMEKNRGHIVGISSM---------------AGIVGLPNL----VPYCASKFA 164
+ + E R G++S+ + + ++ + S F
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 165 VRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLE 224
+ + L+ + R++ + P VD K+ F L
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247
Query: 225 AF----SFTTILDLTYNNLNEQSLPGNFFMLE-------TLRALYLGDNDFEVLPAEI-G 272
+ S D T N L + + + + E T+R L++ + +
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307
Query: 273 NLKNLQI 279
L+ ++
Sbjct: 308 LLEKVKR 314
Score = 86.3 bits (214), Expect = 1e-18
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 25/138 (18%)
Query: 9 LSHNKLKEIPPG---LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR 65
LS N L+ + L L NL L + N +P S K+R LNL + +
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT 427
Query: 66 GFGAFPVLEVLDLTYNNLNE------------------QSLPGNFFMLETLRALYLGDND 107
LEVLD++ NNL+ ++LP L + + N
Sbjct: 428 --CIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQ 484
Query: 108 FEVLPAEI-GNLKNLQII 124
+ +P I L +LQ I
Sbjct: 485 LKSVPDGIFDRLTSLQKI 502
Score = 82.9 bits (205), Expect = 1e-17
Identities = 45/323 (13%), Positives = 96/323 (29%), Gaps = 53/323 (16%)
Query: 4 ITRITLSHNKLKEIPPG--LANLVNLEILTL-FNNQIETLP-TSLSSLPKLRILNLGMNR 59
+ + L N + + NL NL+ L + + + L L L +
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159
Query: 60 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNL 118
L + + + L L + L +L ++R L L D + +
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218
Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC----ASKFAVRGLMEALAE 174
+ ++ RG ++ S ++ L + + GL +
Sbjct: 219 DEVSSPMKKL------AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272
Query: 175 ELREDARNSKIKFTSI---------FPFMVDTGLCKNPKIKM-----NRLSSLPRGFGA- 219
E + K++ +I + + T K+K +++ +P F
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332
Query: 220 ---------------------FPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRAL 257
A+ L L+ N+L G + L+ L +L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392
Query: 258 YLGDNDFEVLPAEIGNLKNLQIM 280
+ N F +P + ++ +
Sbjct: 393 DISRNTFHPMPDSCQWPEKMRFL 415
Score = 82.1 bits (203), Expect = 2e-17
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 1 MLYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMN 58
+ I R+ + L + L ++ +T+ N+++ +P + L L L+L N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 59 RLSSLPRG----FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPA 113
+ GA+P L+ L L+ N+L G + L+ L +L + N F +P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404
Query: 114 EIGNLKNLQI 123
+ ++
Sbjct: 405 SCQWPEKMRF 414
Score = 76.7 bits (189), Expect = 1e-15
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
LS ++ + + LE+L + NN +++ LP+L+ L + N+L +LP
Sbjct: 417 LSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASL 471
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 108
FPVL V+ ++ N L S+P F L +L+ ++L N +
Sbjct: 472 -FPVLLVMKISRNQLK--SVPDGIFDRLTSLQKIWLHTNPW 509
Score = 70.9 bits (174), Expect = 1e-13
Identities = 45/302 (14%), Positives = 91/302 (30%), Gaps = 66/302 (21%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS------------LSSLPKL 50
I +TL ++ + L ++ L L + + S +
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 51 RILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE-------TLRALYL 103
+ + N L L R +E D T N L + + + + E T+R L++
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
Query: 104 GDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
+ + L+ ++ I +E + + + L +L
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRI-------TVENS--KVFLVPCSFS-QHLKSL------- 336
Query: 163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRGF 217
E L D + + + P ++ N L S+ +
Sbjct: 337 -----------EFL--DLSENLMVEEYLKNSACKGAW---PSLQTLVLSQNHLRSMQKTG 380
Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 277
L+ T LD++ N +P + E +R L L V+ I + L
Sbjct: 381 EILLTLKN---LTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTL 433
Query: 278 QI 279
++
Sbjct: 434 EV 435
Score = 69.8 bits (171), Expect = 2e-13
Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 73/293 (24%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSS---------LPKLRILNLGMNR 59
S N+L ++ + L +E N + S S +R L++
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297
Query: 60 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVL----PA 113
L + ++ + + + + +P +F L++L L L +N A
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355
Query: 114 EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV-GLPNLVPYCASKFAVRGLMEAL 172
G +LQ + ++ +N + + I+ L NL
Sbjct: 356 CKGAWPSLQTL-------VLSQNH--LRSMQKTGEILLTLKNL----------------- 389
Query: 173 AEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFS 227
L D + + K++ + +
Sbjct: 390 -TSL--DISRNTFHP-------MPDSCQWPEKMRFLNLSSTGIRVVKTC--------IPQ 431
Query: 228 FTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM 280
+LD++ NNL+ S L L+ LY+ N + LP + L +M
Sbjct: 432 TLEVLDVSNNNLD--SFSLF---LPRLQELYISRNKLKTLP-DASLFPVLLVM 478
Score = 66.3 bits (162), Expect = 4e-12
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + +S+N L L L+ L + N+++TLP S P L ++ + N+L S+
Sbjct: 433 LEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLP-DASLFPVLLVMKISRNQLKSV 488
Query: 64 PRG-FGAFPVLEVLDLTYNNLN 84
P G F L+ + L N +
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWD 510
Score = 53.2 bits (128), Expect = 7e-08
Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 54/242 (22%)
Query: 46 SLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGD 105
S + + +S+P G ++ LDL++N + G+ L+ L L
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKS 59
Query: 106 NDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 164
+ + + +L +L+ + + N + +SS L +L
Sbjct: 60 SRINTIEGDAFYSLGSLEHL-------DLSDNH--LSSLSSSW-FGPLSSL--------- 100
Query: 165 VRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK------MNRLSSLPRG-F 217
+ L + V + ++ + S + R F
Sbjct: 101 ---------KYLN-------LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKN 276
L L++ +L + + + L L ++ L + L +
Sbjct: 145 AGLTSLN------ELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197
Query: 277 LQ 278
++
Sbjct: 198 VR 199
Score = 32.8 bits (75), Expect = 0.15
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 264
N+L +LP FPVL ++ ++ N L S+P F L +L+ ++L N +
Sbjct: 461 NKLKTLPDASL-FPVL------LVMKISRNQLK--SVPDGIFDRLTSLQKIWLHTNPW 509
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 100 bits (251), Expect = 1e-23
Identities = 64/268 (23%), Positives = 99/268 (36%), Gaps = 53/268 (19%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
+ L N ++ I +L +LE+L L N I + + + L L L L N L+
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGD-NDFEVLPAEI-GN 117
+P G F L L L N + +S+P F + +L L LG+ E +
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
L NL+ + + I M + L L EEL
Sbjct: 195 LFNLKYLN-------LGMCN-----IKDMPNLTPLVGL------------------EEL- 223
Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRGFGAFPVLEAFSFTTILDLT 235
+ + F GL K+ + +++S + R AF L + L+L
Sbjct: 224 -EMSGNHFPEIRPGSF---HGLSSLKKLWVMNSQVSLIER--NAFDGLASL---VELNLA 274
Query: 236 YNNLNEQSLPGNFF-MLETLRALYLGDN 262
+NNL SLP + F L L L+L N
Sbjct: 275 HNNL--SSLPHDLFTPLRYLVELHLHHN 300
Score = 74.4 bits (183), Expect = 7e-15
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
+ +S N EI PG L +L+ L + N+Q+ + + L L LNL N LSS
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280
Query: 63 LPRG-FGAFPVLEVLDLTYNNLN 84
LP F L L L +N N
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWN 303
Score = 70.5 bits (173), Expect = 1e-13
Identities = 52/248 (20%), Positives = 81/248 (32%), Gaps = 68/248 (27%)
Query: 34 NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNF 92
+ +P + R LNL N + + F LEVL L N++ + G F
Sbjct: 63 RRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAF 119
Query: 93 FMLETLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG 151
L +L L L DN V+P+ L L+ + + N I I S A
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLREL-------WLRNNP--IESIPSYA-FNR 169
Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS 211
+P+L L +L E + +L
Sbjct: 170 VPSL--------------MRL--DLGE----------------------------LKKLE 185
Query: 212 SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE- 270
+ GAF L + L+L N+ + +P N L L L + N F +
Sbjct: 186 YISE--GAFEGLFNLKY---LNLGMCNI--KDMP-NLTPLVGLEELEMSGNHFPEIRPGS 237
Query: 271 IGNLKNLQ 278
L +L+
Sbjct: 238 FHGLSSLK 245
Score = 39.7 bits (93), Expect = 0.001
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
LS +P+G S T L+L NN+ Q + + F L L L LG N
Sbjct: 64 RGLSEVPQGI--------PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 267 LPAEI-GNLKNLQI 279
+ L +L
Sbjct: 114 IEVGAFNGLASLNT 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 99.3 bits (248), Expect = 2e-23
Identities = 55/301 (18%), Positives = 99/301 (32%), Gaps = 78/301 (25%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSL---------------- 47
+ + S N L E+P +L +L + + LP L L
Sbjct: 93 LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152
Query: 48 PKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND 107
L+I+++ N L LP + LE + N L + LP L L A+Y +N
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQL--EELP-ELQNLPFLTAIYADNNS 206
Query: 108 FEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
+ LP +L+++ N + + + LP L
Sbjct: 207 LKKLPDLPLSLESIVA----------GNNI-----LEELPELQNLPFL------------ 239
Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAF- 226
+ A N+ + ++ + ++ N L+ LP + L+
Sbjct: 240 ------TTI--YADNNLL--KTLPDLP---PSLEALNVRDNYLTDLPELPQSLTFLDVSE 286
Query: 227 -SFTTI---------LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 276
F+ + L+ + N + SL +L L + +N LPA L+
Sbjct: 287 NIFSGLSELPPNLYYLNASSNEIR--SLCDL---PPSLEELNVSNNKLIELPALPPRLER 341
Query: 277 L 277
L
Sbjct: 342 L 342
Score = 97.0 bits (242), Expect = 1e-22
Identities = 56/276 (20%), Positives = 94/276 (34%), Gaps = 64/276 (23%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ L++ L +P +L E L N + LP SL L + N + LS L
Sbjct: 73 AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
P P+LE L ++ N L + LP L+ + + +N + LP +L+ +
Sbjct: 130 P------PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 180
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
N+ + + + LP L + A N+
Sbjct: 181 ----------GNNQ-----LEELPELQNLPFL------------------TAI--YADNN 205
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
+ + ++ N L LP P L T + N L ++
Sbjct: 206 SL--KKLPDLP---LSLESIVAGNNILEELP-ELQNLPFL------TTIYADNNLL--KT 251
Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
LP + +L AL + DN LP +L L +
Sbjct: 252 LPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDV 284
Score = 97.0 bits (242), Expect = 2e-22
Identities = 62/280 (22%), Positives = 101/280 (36%), Gaps = 54/280 (19%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ +S+N+L+++P L N L+I+ + NN ++ LP P L + G N+L LP
Sbjct: 134 EYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELP 189
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
P L + N+L + LP LE+ + G+N E LP E+ NL L I
Sbjct: 190 -ELQNLPFLTAIYADNNSL--KKLPDLPLSLES---IVAGNNILEELP-ELQNLPFLTTI 242
Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR-----ED 179
+ N + LP+L P + + L E + +
Sbjct: 243 Y-------ADNNL-----------LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284
Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
+ N + + P + N + SL + L+++ N L
Sbjct: 285 SENIFSGLSELPPNLYYLNASS------NEIRSLCDLPPSL---------EELNVSNNKL 329
Query: 240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
LP L L N +P NLK L +
Sbjct: 330 --IELPAL---PPRLERLIASFNHLAEVPELPQNLKQLHV 364
Score = 80.4 bits (199), Expect = 7e-17
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + S N+++ + +LE L + NN++ LP + P+L L N L+ +
Sbjct: 299 LYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEV 352
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA----------------LYLGDND 107
P L+ L + YN L P +E LR L++ N
Sbjct: 353 PELPQN---LKQLHVEYNPLR--EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407
Query: 108 FEVLPAEIGNLKNLQI 123
P ++++L++
Sbjct: 408 LREFPDIPESVEDLRM 423
Score = 72.0 bits (177), Expect = 4e-14
Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 51/288 (17%)
Query: 17 IPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL-SSLPRGFGA------ 69
I P + L+ ++ + +P ++ + + P G G
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 70 -------FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
L+L L SLP LE+ L N LP +LK+L
Sbjct: 63 SRLRDCLDRQAHELELNNLGL--SSLPELPPHLES---LVASCNSLTELPELPQSLKSLL 117
Query: 123 II------LETFLPDMME----KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEAL 172
+ L P + N+ + + + L +++ L +
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQ-----LEKLPELQNSSFLKIIDVDNNSLKKLPDLP 172
Query: 173 AEELRE-DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI 231
L A N+++ + L N L LP +
Sbjct: 173 -PSLEFIAAGNNQL--EELPELQNLPFL-TAIYADNNSLKKLPDLPLSL---------ES 219
Query: 232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
+ N L + LP L L +Y +N + LP +L+ L +
Sbjct: 220 IVAGNNIL--EELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264
Score = 60.8 bits (148), Expect = 2e-10
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 23/118 (19%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSL----------------P 48
R+ S N L E+P NL + L + N + P S+
Sbjct: 340 ERLIASFNHLAEVPELPQNL---KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396
Query: 49 KLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
L+ L++ N L P + +E L + + + L +
Sbjct: 397 NLKQLHVETNPLREFPDIPES---VEDLRMNSERVV-DPYEFAHETTDKLEDDVFEHH 450
Score = 48.1 bits (115), Expect = 2e-06
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 20/97 (20%)
Query: 5 TRITLSHNKLKEIPPGLANLV----------------NLEILTLFNNQIETLPTSLSSLP 48
++ + +N L+E P ++ NL+ L + N + P S+
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419
Query: 49 KLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLN 84
LR+ + R+ LE +++ +
Sbjct: 420 DLRMNS---ERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 36.1 bits (84), Expect = 0.014
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 27/88 (30%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRA----------- 256
N L+ +P L + YN L P +E LR
Sbjct: 347 NHLAEVPELPQNL---------KQLHVEYNPLR--EFPDIPESVEDLRMNSHLAEVPELP 395
Query: 257 -----LYLGDNDFEVLPAEIGNLKNLQI 279
L++ N P ++++L++
Sbjct: 396 QNLKQLHVETNPLREFPDIPESVEDLRM 423
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 100 bits (250), Expect = 3e-23
Identities = 49/282 (17%), Positives = 88/282 (31%), Gaps = 67/282 (23%)
Query: 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
+ ++ ++L+ +K + + + L++ Q++ PT LP L+ L L MN+
Sbjct: 284 LANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKG 340
Query: 61 SSLPRGFGAFPVLEVLDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK 119
S + A P L LDL+ N L+ + +LR L L N ++ A L+
Sbjct: 341 SISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399
Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
LQ + + + + ++ + + L L L
Sbjct: 400 ELQHL-------DFQHST--LKRVTEFSAFLSLEKL------------------LYLD-- 430
Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNN 238
I G F L L + N+
Sbjct: 431 -------------------------ISYTNTKIDFDGIFLGLTSLN------TLKMAGNS 459
Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
+ +L F L L L E + + L LQ+
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501
Score = 99.0 bits (247), Expect = 5e-23
Identities = 54/286 (18%), Positives = 96/286 (33%), Gaps = 25/286 (8%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSS 62
+ LS +++ I L +L L L N I++ P S S L L L +L+S
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKN 120
L G L+ L++ +N ++ LP F L L + L N + + + L+
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV-----PYCASKFAVRGLMEALA-- 173
+ + DM + I I A L S ++ ++ LA
Sbjct: 179 NPQVNLSL--DM---SLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231
Query: 174 EELR-EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
R + IF + GLC + I RL+ + + +
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLC-DVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290
Query: 233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
L ++ L ++L + + P +L L+
Sbjct: 291 SLAGVSIK--YLEDVPKHF-KWQSLSIIRCQLKQFPT--LDLPFLK 331
Score = 92.4 bits (230), Expect = 1e-20
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLSSLPRG 66
LS N + L L+ L ++ ++ + ++ SL KL L++ G
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
Query: 67 -FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQII 124
F L L + N+ + +L F L L L E + + L LQ++
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502
Score = 90.9 bits (226), Expect = 3e-20
Identities = 49/266 (18%), Positives = 78/266 (29%), Gaps = 45/266 (16%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP---TSLSSLPKLRILNLGMNRLS 61
+TL+ NK I L +L L L N + S LR L+L N
Sbjct: 331 KSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
+ F L+ LD ++ L + F LE L L + + ++ I L +
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
L + M N + NL L D
Sbjct: 450 LNTLK-------MAGN--SFKDNTLSNVFANTTNL------------------TFL--DL 480
Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNL 239
+++ S F L + + N L L + L LD ++N +
Sbjct: 481 SKCQLEQISWGVFDTLHRL-QLLNMSHNNLLFLDSSHYNQLYSLS------TLDCSFNRI 533
Query: 240 NEQSLPGNFFMLET-LRALYLGDNDF 264
++ G L L +N
Sbjct: 534 --ETSKGILQHFPKSLAFFNLTNNSV 557
Score = 90.1 bits (224), Expect = 6e-20
Identities = 51/299 (17%), Positives = 90/299 (30%), Gaps = 58/299 (19%)
Query: 9 LSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSLPKLRI----LNLGMNRLS 61
++HN + +NL NL + L N I+T+ L L + L++ +N +
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
+ L L L N + + L L L +F+ NL+
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER----NLEIF 250
Query: 122 QIILETFLPDMMEK----NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
+ + L D+ + + L N+ +
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANV------------------SAM- 290
Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLE-----------AF 226
IK+ P ++ I +L P P L+ +F
Sbjct: 291 -SLAGVSIKYLEDVPKH---FKWQSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSISF 344
Query: 227 SFT-----TILDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
+ LDL+ N L+ + +LR L L N ++ A L+ LQ
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403
Score = 79.3 bits (196), Expect = 2e-16
Identities = 48/300 (16%), Positives = 83/300 (27%), Gaps = 64/300 (21%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIET--LPTSLSSLPKLRILNL------GMNRL 60
+S N + I + L LTL N + + T L +L L + L L
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247
Query: 61 SSLPRG-FGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIGNL 118
+ + + N+ S F L + A+ L + L +
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307
Query: 119 K---------NLQIILETFLPD----MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
K L+ LP + N+ S V LP+L
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK-----GSISFKKVALPSL---------- 352
Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAF 220
L D + + F+ + ++ N + F
Sbjct: 353 --------SYL--DLSRNALSFSGCCSY----SDLGTNSLRHLDLSFNGAIIMSANFMGL 398
Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
L+ LD ++ L + F LE L L + + ++ I L +L
Sbjct: 399 EELQ------HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452
Score = 68.9 bits (169), Expect = 5e-13
Identities = 45/316 (14%), Positives = 84/316 (26%), Gaps = 80/316 (25%)
Query: 2 LYITRITLSHNKLKEIPPGLA--NLVNLEILTLFNNQIETL-------PTSLSSLPKLRI 52
+ + +TL N NL L + L + + P+ + L + I
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263
Query: 53 LNLGMNRLSSL---PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
+ + F + + L ++ L ++L + +
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVPKHF-KWQSLSIIRCQLK 320
Query: 110 VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLM 169
P +L L+ + + N+ S V LP+L
Sbjct: 321 QFPT--LDLPFLKSL-------TLTMNK-----GSISFKKVALPSL-------------- 352
Query: 170 EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLE 224
L D + + F+ + ++ N + F L+
Sbjct: 353 ----SYL--DLSRNALSFSGCCSY----SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402
Query: 225 AFSFT-------------------TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265
F LD++Y N + G F L +L L + N F+
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-KIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 266 --VLPAEIGNLKNLQI 279
L N NL
Sbjct: 462 DNTLSNVFANTTNLTF 477
Score = 67.7 bits (166), Expect = 1e-12
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG 66
LS +L++I G L L++L + +N + L +S + L L L+ NR+ +
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539
Query: 67 FGAFPV-LEVLDLTYNNLN 84
FP L +LT N++
Sbjct: 540 LQHFPKSLAFFNLTNNSVA 558
Score = 56.2 bits (136), Expect = 8e-09
Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 67/228 (29%)
Query: 58 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IG 116
+LS +P + +DL++N L +F L+ L L + E + +
Sbjct: 21 QKLSKVPDDI--PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
L +L + ++ N I S + GL +L E L
Sbjct: 78 GLHHLSNL-------ILTGNP--IQSFSPGS-FSGLTSL------------------ENL 109
Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLT 235
+ +L+SL G L+ L++
Sbjct: 110 V---------------------AVET------KLASLESFPIGQLITLK------KLNVA 136
Query: 236 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLE 282
+N ++ LP F L L + L N + + + L+ +
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184
Score = 53.1 bits (128), Expect = 6e-08
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
+ +SHN L + L +L L N+IET L NL N ++
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559
Query: 63 LP 64
+
Sbjct: 560 IC 561
Score = 29.2 bits (66), Expect = 2.0
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
S N+++ +L L NN + + L ++ + + +
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQM 583
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 97.4 bits (243), Expect = 3e-23
Identities = 62/290 (21%), Positives = 98/290 (33%), Gaps = 62/290 (21%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
+ L +NK+ EI G NL NL L L NN+I + P + + L KL L L N+L
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIG---N 117
LP L+ L + N + + F L + + LG N + E G
Sbjct: 114 ELPE--KMPKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
+K L I + I I P+L EL
Sbjct: 170 MKKLSYI-------RIADTN--ITTIPQGL----PPSL------------------TELH 198
Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMN--RLSSLPRGFGAFPVLEAFSFTTILDLT 235
D N K T + GL K+ ++ +S++ G+ L L
Sbjct: 199 LD-GN---KITKV-DAASLKGLNNLAKLGLSFNSISAVDN--GSLANT---PHLRELHLN 248
Query: 236 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-------IGNLKNLQ 278
N L +PG + ++ +YL +N+ + + +
Sbjct: 249 NNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296
Score = 93.1 bits (232), Expect = 1e-21
Identities = 54/270 (20%), Positives = 100/270 (37%), Gaps = 55/270 (20%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL 63
R+ LS N+LKE+P + L+ L + N+I + + + L ++ ++ LG N L S
Sbjct: 103 ERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Query: 64 PRGFGAF---PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
GAF L + + N+ ++P +L L+L N + A L
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNI--TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN 216
Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
NL + + N I + + + + P+L EL +
Sbjct: 217 NLAKLG-------LSFNS--ISAVDNGS-LANTPHL------------------RELHLN 248
Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILD 233
N+K+ V GL + I++ N +S++ F + + +
Sbjct: 249 --NNKLV-------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
Query: 234 LTYNNLNEQSL-PGNFFMLETLRALYLGDN 262
L N + + P F + A+ LG+
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 47.3 bits (113), Expect = 3e-06
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 1 MLYITRITLSHNKLKEIPPG-------LANLVNLEILTLFNNQIETL---PTSLSSLPKL 50
YI + L +N + I + ++LF+N ++ P++ +
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321
Query: 51 RILNLGMNR 59
+ LG +
Sbjct: 322 AAVQLGNYK 330
Score = 46.5 bits (111), Expect = 5e-06
Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 72/232 (31%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 108
LR++ L +P+ P +LDL N + + F L+ L L L +N
Sbjct: 33 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKI 88
Query: 109 EVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
+ L L+ + + KN+ + LP +P +
Sbjct: 89 SKISPGAFAPLVKLERL-------YLSKNQ-----------LKELPEKMP--------KT 122
Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFS 227
L +ELR + N ++ + + F L
Sbjct: 123 L-----QELR---------------------------VHENEITKVRKS--VFNGLNQM- 147
Query: 228 FTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+++L N L + F ++ L + + D + +P G +L
Sbjct: 148 --IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLT 195
Score = 35.7 bits (83), Expect = 0.017
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 12/74 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
L +P+ T +LDL N + + F L+ L L L +N
Sbjct: 41 LGLEKVPKDL--------PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISK 90
Query: 267 LPAEI-GNLKNLQI 279
+ L L+
Sbjct: 91 ISPGAFAPLVKLER 104
Score = 35.4 bits (82), Expect = 0.020
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L LP L+ L + N + + F L + + LG N +
Sbjct: 110 NQLKELPEK--MPKTLQ------ELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 267 LPAEIG---NLKNLQIM 280
E G +K L +
Sbjct: 160 SGIENGAFQGMKKLSYI 176
Score = 34.2 bits (79), Expect = 0.048
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 207 MNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 264
N+++ + G F L L L N + + F L L LYL N
Sbjct: 61 NNKITEIKDGDFKNLKNL------HTLILINNKI--SKISPGAFAPLVKLERLYLSKNQL 112
Query: 265 EVLPAEI-GNLKNLQI 279
+ LP ++ L+ L++
Sbjct: 113 KELPEKMPKTLQELRV 128
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 97.9 bits (244), Expect = 4e-23
Identities = 59/282 (20%), Positives = 96/282 (34%), Gaps = 38/282 (13%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
+ + LS+N++ I L VNL+ L L +N I T+ S SSL L L+L N LS
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLPAEI-GNL 118
+L F L L+L N F L L+ L +G+ D F + + L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
L+ + ++ + S+ I + +L+ L L E
Sbjct: 174 TFLEEL-------EIDASDLQSYEPKSLKSIQNVSHLI-----------LHMKQHILLLE 215
Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYN 237
+ + L + S L G + F + +T
Sbjct: 216 IFVDVTSSVECLE-------LRDTD-LDTFHFSELSTGETNSLIKKFTF---RNVKITDE 264
Query: 238 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
+L + + L L N + +P I L +LQ
Sbjct: 265 SL--FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304
Score = 88.6 bits (220), Expect = 5e-20
Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 51/271 (18%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
+ L+ N + I ++L +LE L L N + L +S L L LNL N +
Sbjct: 79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138
Query: 63 LPRG--FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
L F L++L + + + +F L L L + +D + + +++
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198
Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIV--GLPNLVPYCASKFAVRGLMEALAEELR 177
N+ + ++ + + I ++ E L
Sbjct: 199 NVSHL-------ILHMKQ-----HILLLEIFVDVTSSV------------------ECLE 228
Query: 178 -EDARNSKIKFTSIFPFMVDTGL----CKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
D F+ + ++ + +N KI L + + L L
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL------EL 282
Query: 233 DLTYNNLNEQSLPGNFF-MLETLRALYLGDN 262
+ + N L +S+P F L +L+ ++L N
Sbjct: 283 EFSRNQL--KSVPDGIFDRLTSLQKIWLHTN 311
Score = 85.2 bits (211), Expect = 9e-19
Identities = 62/285 (21%), Positives = 92/285 (32%), Gaps = 57/285 (20%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG- 66
S L IP GL ++ L L NN+I + S L L+ L L N ++++
Sbjct: 38 GSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQIIL 125
F + LE LDL+YN L +L ++F L +L L L N ++ L E +L
Sbjct: 96 FSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKTLG-ETSLFSHL---- 148
Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
T L + N I GL L EEL D +
Sbjct: 149 -TKLQILRVGNMDTFTKIQRKD-FAGLTFL------------------EELEID-AS--- 184
Query: 186 KFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL- 239
S P L + M + L V S L+L +L
Sbjct: 185 DLQSYEPKS----LKSIQNVSHLILHMKQHILLLE--IFVDVT---SSVECLELRDTDLD 235
Query: 240 --NEQSLPGNFF----MLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+ L T R + + D + + + L
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280
Score = 69.4 bits (170), Expect = 2e-13
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 4 ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLP---------TSLSSLPKLRIL 53
++ + L + + ++E L L + ++T SL R +
Sbjct: 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259
Query: 54 NLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDN 106
+ L + + L L+ + N L +S+P F L +L+ ++L N
Sbjct: 260 KITDESLFQVMKLLNQISGLLELEFSRNQL--KSVPDGIFDRLTSLQKIWLHTN 311
Score = 62.8 bits (153), Expect = 3e-11
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 1 MLYITRITLSHNKLKEIPPG----LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLG 56
L + L E+ G L + + + + + L+ + L L
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285
Query: 57 MNRLSSLPRG-FGAFPVLEVLDLTYNNLN 84
N+L S+P G F L+ + L N +
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
Score = 39.7 bits (93), Expect = 9e-04
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
L+S+P G LDL+ N + + + L+AL L N
Sbjct: 41 GSLNSIPSGL--------TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINT 90
Query: 267 LPAEI-GNLKNLQI 279
+ + +L +L+
Sbjct: 91 IEEDSFSSLGSLEH 104
Score = 37.4 bits (87), Expect = 0.006
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 207 MNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDF 264
NR++ + L L LT N + ++ + F L +L L L N
Sbjct: 61 NNRITYISNSDLQRCVNL------QALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 265 EVLPAEI-GNLKNLQI 279
L + L +L
Sbjct: 113 SNLSSSWFKPLSSLTF 128
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 93.8 bits (234), Expect = 6e-23
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
L + V + V +P Y A+K A+ +EA +EL + +
Sbjct: 105 LKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLRE----GVHLV 160
Query: 189 SIFPFMVDTGL 199
+ V TGL
Sbjct: 161 LVRLPAVATGL 171
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 98.2 bits (245), Expect = 1e-22
Identities = 56/313 (17%), Positives = 96/313 (30%), Gaps = 47/313 (15%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
+ LS N L+ + + L++L L +I+T+ + SL L L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL--PAEIGNL 118
SL G F L+ L NL L+TL+ L + N + P NL
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 119 KNLQII------LETFLPDMMEK-------------NRGHIVGISSMAGIVGLPNL---- 155
NL+ + +++ + + + I G L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLHKLT 206
Query: 156 -------VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMN 208
+ + +E L E ++ GLC N I+
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL---EGLC-NLTIEEF 262
Query: 209 RLSSLPRGFGAFP-VLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
RL+ L + + + L + +F + L L + F
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQF 319
Query: 268 PAE-IGNLKNLQI 279
P + +LK L
Sbjct: 320 PTLKLKSLKRLTF 332
Score = 95.1 bits (237), Expect = 1e-21
Identities = 51/280 (18%), Positives = 85/280 (30%), Gaps = 69/280 (24%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
++ +L ++ + + + L L N + PT L SL +L + S
Sbjct: 284 VSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
P LE LDL+ N L+ + + F +L+ L L N + + L+ L
Sbjct: 343 ----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398
Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
+ + + + + +S + + L NL L
Sbjct: 399 EHL-------DFQHSN--LKQMSEFSVFLSLRNL------------------IYLD---- 427
Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLN 240
I G F LE +L + N+
Sbjct: 428 -----------------------ISHTHTRVAFNGIFNGLSSLE------VLKMAGNSFQ 458
Query: 241 EQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
E LP F L L L L E L +L +LQ+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Score = 92.0 bits (229), Expect = 1e-20
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 4/125 (3%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNLGMNRLS 61
+ + LS N + + L LE L ++ ++ + + SL L L++
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLK 119
G F LEVL + N+ E LP F L L L L E L +L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 120 NLQII 124
+LQ++
Sbjct: 495 SLQVL 499
Score = 91.6 bits (228), Expect = 2e-20
Identities = 50/297 (16%), Positives = 94/297 (31%), Gaps = 53/297 (17%)
Query: 9 LSHNKLK--EIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRI----LNLGMNRLS 61
++HN ++ ++P +NL NLE L L +N+I+++ T L L ++ + L+L +N ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-------EVLPAE 114
+ G L L L N + + L L L +F + +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 115 IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAE 174
+ L NL I + + L N+
Sbjct: 251 LEGLCNLTI-------EEFRLAYLDYYLDDIIDLFNCLTNV------------------S 285
Query: 175 ELREDARNSKIKFTSIFPFMVD-----------TGLCKNPKIKMNRLSSLPRGFGAFPVL 223
+ I+ F + + RL+ G
Sbjct: 286 SF--SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343
Query: 224 EAFSFTTILDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
LDL+ N L+ + + F +L+ L L N + + L+ L+
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400
Score = 88.2 bits (219), Expect = 2e-19
Identities = 51/276 (18%), Positives = 84/276 (30%), Gaps = 56/276 (20%)
Query: 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI---ETLPTSLSSLPKLRILNLGM 57
+ + R+T + NK +L +LE L L N + S L+ L+L
Sbjct: 324 LKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 58 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IG 116
N + ++ F LE LD ++NL + S F L L L + V
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
L +L+++ M N L NL L
Sbjct: 443 GLSSLEVLK-------MAGN--SFQENFLPDIFTELRNL------------------TFL 475
Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTT 230
D ++ + P +++ N SL + L
Sbjct: 476 --DLSQCQL--EQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL------Q 521
Query: 231 ILDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDF 264
+LD + N++ + +L L L NDF
Sbjct: 522 VLDYSLNHI--MTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 87.4 bits (217), Expect = 4e-19
Identities = 57/287 (19%), Positives = 93/287 (32%), Gaps = 57/287 (19%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG- 66
+IP L + + L L N + L S S P+L++L+L + ++ G
Sbjct: 14 CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIIL 125
+ + L L LT N + G F L +L+ L + + L IG+LK L+ +
Sbjct: 72 YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL- 129
Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
+ N I L NL E L S
Sbjct: 130 ------NVAHN--LIQSFKLPEYFSNLTNL------------------EHLDL----SSN 159
Query: 186 KFTSIFPFMVDTGLCKNPKIK------MNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
K SI+ + L + P + +N ++ + G L L L N
Sbjct: 160 KIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL------HKLTLRNNFD 212
Query: 240 NEQSLPGNFFMLETLRALYLGDNDF-------EVLPAEIGNLKNLQI 279
+ + L L L +F + + + L NL I
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Score = 86.2 bits (214), Expect = 1e-18
Identities = 50/298 (16%), Positives = 83/298 (27%), Gaps = 68/298 (22%)
Query: 2 LYITRITLSHNKLK-EIPPG-LANLVNLEILTLFNNQIETLPT----SLSSLPKLRILNL 55
+ + ++TL +N + + L LE+ L + S+L L L +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 56 GMNRLSSL-------PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
RL+ L F + L + +F + L L + F
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKF 316
Query: 109 EVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
P + +LK L S V LP+L
Sbjct: 317 GQFPTLKLKSLKRLTF------------TSNKGGNAFS---EVDLPSL------------ 349
Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPV 222
E L D + + F +K N + ++ F
Sbjct: 350 ------EFL--DLSRNGLSFKGCCSQ----SDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 223 LEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
LE LD ++NL + S F L L L + V L +L++
Sbjct: 398 LE------HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Score = 48.5 bits (116), Expect = 2e-06
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPK-LRILNLGMNRLS 61
+SHN + L +L++L N I T L P L LNL N +
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 40.0 bits (94), Expect = 0.001
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 208 NRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 266
L+SL G L+ L++ +N + LP F L L L L N +
Sbjct: 110 TNLASLENFPIGHLKTLK------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 267 L-PAEIGNLKNLQIML 281
+ ++ L + ++
Sbjct: 164 IYCTDLRVLHQMPLLN 179
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 95.6 bits (238), Expect = 1e-22
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 126 ETFLPDMMEKNR------GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
TF+P M+E+ + GH+V +SMA + + Y +KFAVRGL E+L L +
Sbjct: 127 TTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSLLKY 186
Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG 216
+I + + P +V + + + I+ + L +
Sbjct: 187 ----EIGVSVLCPGLVKSYIYASDDIRPDALKGEVKP 219
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 94.6 bits (236), Expect = 2e-22
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
LP M++++ G IV +SS+AG V P + Y ASKFA+ G ++ +E N +
Sbjct: 148 ALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN--VSI 204
Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLP 214
T ++DT + + + P
Sbjct: 205 TLCVLGLIDTETAMKAVSGIVHMQAAP 231
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 95.1 bits (237), Expect = 2e-22
Identities = 44/269 (16%), Positives = 81/269 (30%), Gaps = 70/269 (26%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ L +NK+ +I + L L+ L + N + +P +L L L + NR+ +
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKV 138
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
P+G F + +++ N L F L L + + +P + L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLN 196
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
+ ++ N+ I I ++ L L
Sbjct: 197 EL-------HLDHNK--IQAIELED-LLRYSKL------------------YRLG----- 223
Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNE 241
L N ++ + G P L L L N L
Sbjct: 224 ----------------LGHN------QIRMIENGSLSFLPTLR------ELHLDNNKL-- 253
Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAE 270
+P L+ L+ +YL N+ +
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNNITKVGVN 282
Score = 88.9 bits (221), Expect = 3e-20
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRL 60
L + + +S KL IP L L L L +N+I+ + L KL L LG N++
Sbjct: 172 LKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 61 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 114
+ G P L L L N L +P L+ L+ +YL N+ +
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVGVN 282
Score = 84.7 bits (210), Expect = 1e-18
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
T + L +N + E+ L +L L L NN+I + + S L KL+ L + N L
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKN 120
+P L L + N + + +P F L + + +G N E E G
Sbjct: 116 EIPP--NLPSSLVELRIHDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 121 LQ 122
L+
Sbjct: 172 LK 173
Score = 83.5 bits (207), Expect = 3e-18
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
R+ L HN+++ I G L+ L L L L NN++ +P L L L+++ L N ++ +
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279
Query: 64 PRG-------FGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYLGDN 106
+ L N + + P F + A+ G+
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 77.4 bits (191), Expect = 4e-16
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 4 ITRITLSHNKLKE--IPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS 61
+ I + N L+ PG + + L L + ++ +P L L L+L N++
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQ 206
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPAEIGNLK 119
++ + L L L +N + + + L TLR L+L +N +PA + +LK
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264
Query: 120 NLQ 122
LQ
Sbjct: 265 LLQ 267
Score = 74.7 bits (184), Expect = 3e-15
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL 63
+ S LK +P ++ + +L L NN I L L L L L N++S +
Sbjct: 36 RVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNL 121
F L+ L ++ N+L +P N +L L + DN +P + L+N+
Sbjct: 94 HEKAFSPLRKLQKLYISKNHL--VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149
Query: 122 QII 124
I
Sbjct: 150 NCI 152
Score = 45.4 bits (108), Expect = 1e-05
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 1 MLYITRITLSHNKLKEIPPG-------LANLVNLEILTLFNNQIETL---PTSLSSLPKL 50
+ + + L N + ++ ++LFNN + P + +
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322
Query: 51 RILNLGMNR 59
+ G +
Sbjct: 323 LAIQFGNYK 331
Score = 45.0 bits (107), Expect = 2e-05
Identities = 42/232 (18%), Positives = 72/232 (31%), Gaps = 73/232 (31%)
Query: 50 LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 108
LR++ L ++P+ P +LDL N++ L + F L+ L AL L +N
Sbjct: 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKI 90
Query: 109 EVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
+ + L+ LQ + + KN +V +P +P
Sbjct: 91 SKIHEKAFSPLRKLQKL-------YISKNH-----------LVEIPPNLP--------SS 124
Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAF 226
L ELR I NR+ +P+G F +
Sbjct: 125 L-----VELR---------------------------IHDNRIRKVPKGVFSGLRNM--- 149
Query: 227 SFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+++ N L F L L + + +P + L
Sbjct: 150 ---NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLN 196
Score = 34.2 bits (79), Expect = 0.054
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 207 MNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265
N +S L + F L A L L N +++ F L L+ LY+ N
Sbjct: 63 NNDISELRKDDFKGLQHLYA------LVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLV 115
Query: 266 VLPAEI-GNLKNLQI 279
+P + +L L+I
Sbjct: 116 EIPPNLPSSLVELRI 130
Score = 32.7 bits (75), Expect = 0.15
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
N++S + AF L L ++ N+L +P N +L L + DN +
Sbjct: 88 NKISKIHEK--AFSPLRKL---QKLYISKNHL--VEIPPNLP--SSLVELRIHDNRIRKV 138
Query: 268 PAEI-GNLKNLQI 279
P + L+N+
Sbjct: 139 PKGVFSGLRNMNC 151
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 94.4 bits (235), Expect = 2e-22
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
+ LSHN+L+ +P L L +L + N++ +LP L +L+ L L N L +L
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEIGNLKNL 121
P G P LE L L NNL LP LE L L L +N +P L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 122 QII 124
Sbjct: 198 PFA 200
Score = 90.2 bits (224), Expect = 8e-21
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
T + LS N L L L L L ++ L +LP L L+L N+L SL
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSL 92
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNL 121
P P L VLD+++N L SLP G L L+ LYL N+ + LP + L
Sbjct: 93 PLLGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 122 Q 122
+
Sbjct: 151 E 151
Score = 89.8 bits (223), Expect = 9e-21
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
T++ L +L ++ L L L L +NQ+++LP +LP L +L++ NRL+SLP
Sbjct: 58 TQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 65 RG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLKNL 121
G L+ L L N L ++LP L L L +N+ LPA + L+NL
Sbjct: 117 LGALRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 122 Q 122
Sbjct: 175 D 175
Score = 89.0 bits (221), Expect = 2e-20
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
T + +S N+L +P G L L+ L L N+++TLP L + PKL L+L N L+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
LP G L+ L L N+L ++P FF L +L N
Sbjct: 163 LPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGN 205
Score = 61.3 bits (149), Expect = 8e-11
Identities = 25/115 (21%), Positives = 32/115 (27%), Gaps = 29/115 (25%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRGF 67
L +PP L + IL L N + T +L +L LNL L+ L
Sbjct: 17 CDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-- 72
Query: 68 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
L L L L N + LP L L
Sbjct: 73 ------------------------DGTLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Score = 45.5 bits (108), Expect = 1e-05
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L SLP P L T+LD+++N L SLP G L L+ LYL N+ +
Sbjct: 87 NQLQSLPLLGQTLPAL------TVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKT 138
Query: 267 LPAEI-GNLKNLQ 278
LP + L+
Sbjct: 139 LPPGLLTPTPKLE 151
Score = 41.6 bits (98), Expect = 2e-04
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEV 266
N L +LP G +L L L NNL LP LE L L L +N
Sbjct: 134 NELKTLPPG-----LLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLYT 186
Query: 267 LPAEIGNLKNLQ 278
+P L
Sbjct: 187 IPKGFFGSHLLP 198
Score = 41.6 bits (98), Expect = 2e-04
Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 8/71 (11%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
N L + T L+L L L L L L L N + L
Sbjct: 41 NLLYTFSLA--TLMPYTRL---TQLNLDRAEL--TKLQV-DGTLPVLGTLDLSHNQLQSL 92
Query: 268 PAEIGNLKNLQ 278
P L L
Sbjct: 93 PLLGQTLPALT 103
Score = 39.7 bits (93), Expect = 9e-04
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
L+ L L LDL++N L QSLP L L L + N L
Sbjct: 65 AELTKLQ----VDGTLPVL---GTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 268 PAEI-GNLKNLQ 278
P L LQ
Sbjct: 116 PLGALRGLGELQ 127
Score = 38.5 bits (90), Expect = 0.002
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
L++LP TTIL L+ N L S L L L + L
Sbjct: 20 RNLTALPPD--------LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKL 70
Query: 268 PAEIGNLKNLQ 278
+ G L L
Sbjct: 71 QVD-GTLPVLG 80
Score = 36.2 bits (84), Expect = 0.012
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN 262
N L+ LP G LE L L N+L ++P FF L +L N
Sbjct: 158 NNLTELPAG--LLNGLENL---DTLLLQENSL--YTIPKGFFGSHLLPFAFLHGN 205
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 93.5 bits (233), Expect = 4e-22
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
+ L L+E+ PG L L+ L L +N ++ LP + L L L L NR+SS
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLK 119
+P F L+ L L N + + + F L L LYL N+ LP E L+
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRV--AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 120 NLQII 124
LQ +
Sbjct: 226 ALQYL 230
Score = 92.7 bits (231), Expect = 9e-22
Identities = 64/267 (23%), Positives = 90/267 (33%), Gaps = 73/267 (27%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN-RL 60
RI L N++ +P NL IL L +N + + + + L L L+L N +L
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 61 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GN 117
S+ F L L L L Q L F L L+ LYL DN + LP + +
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
L NL + + NR I + A GL +L + L
Sbjct: 152 LGNLTHL-------FLHGNR--ISSVPERA-FRGLHSL------------------DRLL 183
Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTY 236
L +N R++ + F L L L
Sbjct: 184 ---------------------LHQN------RVAHVHPHAFRDLGRLM------TLYLFA 210
Query: 237 NNLNEQSLPGNFF-MLETLRALYLGDN 262
NNL +LP L L+ L L DN
Sbjct: 211 NNL--SALPTEALAPLRALQYLRLNDN 235
Score = 78.5 bits (194), Expect = 8e-17
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-F 67
L+ +P G+ + + L N+I +P S + L IL L N L+ + F
Sbjct: 19 PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
Query: 68 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
+LE LDL+ N P F L L L+L + L + L LQ
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Score = 71.2 bits (175), Expect = 3e-14
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
T + L N++ +P L +L+ L L N++ + + L +L L L N LS+
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 63 LPRG-FGAFPVLEVLDLTYNNLN 84
LP L+ L L N
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWV 238
Score = 52.3 bits (126), Expect = 5e-08
Identities = 39/225 (17%), Positives = 60/225 (26%), Gaps = 69/225 (30%)
Query: 58 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
L ++P G + + L N ++ +F L L+L N + A
Sbjct: 21 QGLQAVPVGI--PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFT 77
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
L L+ + + N + + GL L L
Sbjct: 78 GLALLEQL-------DLSDNA-QLRSVDPAT-FHGLGRL------------------HTL 110
Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLT 235
+ L L G F L+ L L
Sbjct: 111 H---------------------------LDRCGLQELGPGLFRGLAALQ------YLYLQ 137
Query: 236 YNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
N L Q+LP + F L L L+L N +P L +L
Sbjct: 138 DNAL--QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Score = 40.4 bits (95), Expect = 5e-04
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
+L S+ F L L L L Q L F L L+ LYL DN +
Sbjct: 91 AQLRSVDPA--TFHGLGRL---HTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQA 143
Query: 267 LPAEI-GNLKNLQIM 280
LP + +L NL +
Sbjct: 144 LPDDTFRDLGNLTHL 158
Score = 37.7 bits (88), Expect = 0.003
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
NR+SS+P AF L + L L N + + + F L L LYL N+
Sbjct: 163 NRISSVPER--AFRGLHSL---DRLLLHQNRV--AHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 267 LPAEI-GNLKNLQ 278
LP E L+ LQ
Sbjct: 216 LPTEALAPLRALQ 228
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 93.4 bits (233), Expect = 6e-22
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 4 ITRITLSHNKL---KEIPPGLANLVNLEILTLFN-NQIE-TLPTSLSSLPKLRILNLGMN 58
+ + LS L IP LANL L L + N + +P +++ L +L L +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 59 RLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIG 116
+S ++P L LD +YN L+ +LP + L L + N +P G
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 117 NLKNLQIIL 125
+ L +
Sbjct: 171 SFSKLFTSM 179
Score = 91.8 bits (229), Expect = 3e-21
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 5 TRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS- 61
+ ++H + IP L+ + L L N + TLP S+SSLP L + NR+S
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 62 SLPRGFGAFPVL-EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
++P +G+F L + ++ N L +P F L L + L N E G+ K
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221
Query: 120 NLQII 124
N Q I
Sbjct: 222 NTQKI 226
Score = 86.8 bits (216), Expect = 1e-19
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 3 YITRITLSH-NKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNR 59
Y+ + + N L IPP +A L L L + + + +P LS + L L+ N
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 60 LS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL-RALYLGDNDFE-VLPAEIG 116
LS +LP + P L + N ++ ++P ++ L ++ + N +P
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 117 NLKNLQII 124
NL NL +
Sbjct: 196 NL-NLAFV 202
Score = 83.4 bits (207), Expect = 2e-18
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 5 TRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKL-RILNLGMNRLS 61
+ S+N L +PP +++L NL +T N+I +P S S KL + + NRL+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 62 -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
+P F L +DL+ N L E F + + ++L N L ++G K
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244
Query: 120 NLQII 124
NL +
Sbjct: 245 NLNGL 249
Score = 79.1 bits (196), Expect = 7e-17
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 5 TRITLSHNKLK-EIPPGLANLVNL-EILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
IT N++ IP + L +T+ N++ +P + ++L L ++L N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Query: 62 -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
FG+ + + L N+L L + + L L L +N LP + LK
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAF-DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 120 NLQII 124
L +
Sbjct: 269 FLHSL 273
Score = 76.8 bits (190), Expect = 5e-16
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 17 IPPGLANLVNLEILTLFNNQIE---TLPTSLSSLPKLRILNL-GMNRLS-SLPRGFGAFP 71
+ + L L + +P+SL++LP L L + G+N L +P
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 72 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQII 124
L L +T+ N++ ++P ++TL L N LP I +L NL I
Sbjct: 102 QLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Score = 75.3 bits (186), Expect = 2e-15
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 4 ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
T +T+S N+L +IPP ANL NL + L N +E S + ++L N L+
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 62 -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
L + G L LDL N + +LP L+ L +L + N+ +P + GNL+
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291
Query: 120 NLQII 124
+
Sbjct: 292 RFDVS 296
Score = 56.0 bits (136), Expect = 4e-09
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 4 ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
+I L+ N L ++ + NL L L NN+I TLP L+ L L LN+ N L
Sbjct: 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 62 -SLPRGFGAFPVLEVLDLTYNN 82
+P+G G +V N
Sbjct: 282 GEIPQG-GNLQRFDVSAYANNK 302
Score = 43.7 bits (104), Expect = 5e-05
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 208 NRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE- 265
NR+S ++P +G+F L T + ++ N L +P F L L + L N E
Sbjct: 159 NRISGAIPDSYGSFSKL-----FTSMTISRNRLTG-KIPPTFANL-NLAFVDLSRNMLEG 211
Query: 266 VLPAEIGNLKNLQIM 280
G+ KN Q +
Sbjct: 212 DASVLFGSDKNTQKI 226
Score = 42.9 bits (102), Expect = 7e-05
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 208 NRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE- 265
+S ++P L LD +YN L+ +LP + L L + N
Sbjct: 111 TNVSGAIPDFLSQIKTL------VTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISG 163
Query: 266 VLPAEIGNLKNLQIML 281
+P G+ L +
Sbjct: 164 AIPDSYGSFSKLFTSM 179
Score = 39.8 bits (94), Expect = 8e-04
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 227 SFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQI 279
+ L + N +P L L LY+ + +P + +K L
Sbjct: 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Score = 38.7 bits (91), Expect = 0.002
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 208 NRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE- 265
N L FG+ + + L N+L L + + L L L +N
Sbjct: 207 NMLEGDASVLFGSDKNTQ------KIHLAKNSLAF-DLG-KVGLSKNLNGLDLRNNRIYG 258
Query: 266 VLPAEIGNLKNLQ 278
LP + LK L
Sbjct: 259 TLPQGLTQLKFLH 271
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 95.2 bits (237), Expect = 1e-21
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 4/125 (3%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLS 61
+ + LS N + + L LE L ++ ++ + + SL L L++
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
G F LEVL + N+ E LP F L L L L E L +L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 120 NLQII 124
+LQ++
Sbjct: 495 SLQVL 499
Score = 94.4 bits (235), Expect = 2e-21
Identities = 57/289 (19%), Positives = 107/289 (37%), Gaps = 29/289 (10%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
+ LS +++ I G +L +L L L N I++L + S L L+ L L+S
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKN 120
L G L+ L++ +N + LP F L L L L N + + + L
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 121 LQIILETFLPDMMEKNRGHIVGIS-------SMAGIVGLPNLVPYCASKFAVRGL--MEA 171
+ ++ + ++ + + I + + N K ++GL +E
Sbjct: 175 MPLLNLS-----LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229
Query: 172 LAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI 231
L E ++ GLC N I+ RL+ L + F +
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSAL---EGLC-NLTIEEFRLAYLD----YYLDDIIDLFNCL 281
Query: 232 LDLTYNNLNEQSLPG--NFFMLETLRALYLGDNDFEVLPA-EIGNLKNL 277
+++ +L ++ +F + L L + F P ++ +LK L
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330
Score = 94.4 bits (235), Expect = 2e-21
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLS 61
+ LS N L+ + + L++L L +I+T+ + SL L L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVL--PAEIGN 117
SL G F L+ L NL SL L+TL+ L + N + P N
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 118 LKNLQII 124
L NL+ +
Sbjct: 148 LTNLEHL 154
Score = 94.0 bits (234), Expect = 3e-21
Identities = 48/278 (17%), Positives = 81/278 (29%), Gaps = 67/278 (24%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
++ +L ++ + + + L L N + PT L L+ L N+ +
Sbjct: 284 VSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNA 340
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQ 122
P LE LDL+ N L+ + +L+ L L N + + L+ L+
Sbjct: 341 FS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
+ + + + +S + + L NL L
Sbjct: 400 HL-------DFQHSN--LKQMSEFSVFLSLRNL------------------IYLD----- 427
Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNE 241
I G F L +L + N+ E
Sbjct: 428 ----------------------ISHTHTRVAFNGIFNGLSSL------EVLKMAGNSFQE 459
Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
LP F L L L L E L +L +LQ
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Score = 91.7 bits (228), Expect = 2e-20
Identities = 50/287 (17%), Positives = 94/287 (32%), Gaps = 25/287 (8%)
Query: 5 TRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSLPKLRI----LNLGM 57
+ ++HN ++ +NL NLE L L +N+I+++ T L L ++ + L+L +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 58 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA---- 113
N ++ + G L L L N + + L L L +F
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 114 EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALA 173
+ L+ L + + L N+ + + + +
Sbjct: 247 DKSALEGLCNLTIEEFRL----AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302
Query: 174 EELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILD 233
+ KF P + L K N+ + P LE LD
Sbjct: 303 NFGWQHLELVNCKFGQF-PTLKLKSL-KRLTFTSNKGGNAFS-EVDLPSLE------FLD 353
Query: 234 LTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L+ N L+ + +L+ L L N + + L+ L+
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400
Score = 85.2 bits (211), Expect = 2e-18
Identities = 56/278 (20%), Positives = 91/278 (32%), Gaps = 69/278 (24%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG- 66
+IP L + + L L N + L S S P+L++L+L + ++ G
Sbjct: 14 CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 67 FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQII 124
+ + L L LT N + QSL G F L +L+ L + + L IG+LK L+ +
Sbjct: 72 YQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
+ N I L NL E L
Sbjct: 130 N-------VAHN--LIQSFKLPEYFSNLTNL------------------EHLD------- 155
Query: 185 IKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQS 243
L N ++ S+ + + + LDL+ N +
Sbjct: 156 --------------LSSN------KIQSIYCTDLRVLHQMPLLNLS--LDLSLNPM--NF 191
Query: 244 LPGNFFMLETLRALYLGDN--DFEVLPAEIGNLKNLQI 279
+ F L L L +N V+ I L L++
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229
Score = 85.2 bits (211), Expect = 2e-18
Identities = 53/297 (17%), Positives = 87/297 (29%), Gaps = 57/297 (19%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQI--ETLPTSLSSLPKLRILNLGMNRLSSLPR- 65
LS N + I PG + L LTL NN + T + L L + L + +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 66 ---GFGAFPVL-----EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG- 116
A L E L Y + + F L + + L E +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303
Query: 117 -NLKNLQI-------ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
++L++ L + G ++ + V LP+L
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSL------------- 349
Query: 169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVL 223
E L D + + F +K N + ++ F L
Sbjct: 350 -----EFL--DLSRNGLSFKGCCSQS----DFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398
Query: 224 EAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
LD ++NL + S F L L L + V I L +L++
Sbjct: 399 ------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Score = 79.0 bits (195), Expect = 2e-16
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIE--TLPTSLSSLPKLRILNLGMNRLSSLPR 65
+SH + G L +LE+L + N + LP + L L L+L +L L
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 66 G-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDF 108
F + L+VL++ N L +S+P F L +L+ ++L N +
Sbjct: 488 TAFNSLSSLQVLNMASNQL--KSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 79.0 bits (195), Expect = 3e-16
Identities = 50/291 (17%), Positives = 91/291 (31%), Gaps = 31/291 (10%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEI----LTLFNNQIETLPTSLSSLPKLRILNLGMN 58
+ + LS NK++ I L L + + L L N + + +L L L N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
Query: 59 RLSS--LPRGFGAFPVLEVLDLTYNNL----NEQSLPGNFFMLETLRALYLGDNDFEVLP 112
S + LEV L N + + E L L + + L
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL--EGLCNLTIEEFRLAYLD 268
Query: 113 AEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEAL 172
+ ++ +L L + I + + G +L L
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVT--IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 173 AEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRGFGAFPVLEAFSFTT 230
+ L + K + F + L + + N LS + +
Sbjct: 327 LKRL----TFTSNKGGNAFSEVDLPSLE---FLDLSRNGLSFKGCCSQSDFGTTS---LK 376
Query: 231 ILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI--GNLKNLQI 279
LDL++N + ++ NF LE L L ++ + + +L+NL
Sbjct: 377 YLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Score = 68.6 bits (168), Expect = 6e-13
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 9 LSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR 65
++ N +E L NL L L Q+E L T+ +SL L++LN+ N+L S+P
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Query: 66 G-FGAFPVLEVLDLTYNNLN 84
G F L+ + L N +
Sbjct: 512 GIFDRLTSLQKIWLHTNPWD 531
Score = 42.0 bits (99), Expect = 2e-04
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 208 NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 266
L+SL G L+ L++ +N + LP F L L L L N +
Sbjct: 110 TNLASLENFPIGHLKTLK------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 267 LPAE-IGNLKNLQIML 281
+ + L + ++
Sbjct: 164 IYCTDLRVLHQMPLLN 179
Score = 33.9 bits (78), Expect = 0.087
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQI 37
+ ++ N+LK +P G L +L+ + L N
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 33.1 bits (76), Expect = 0.15
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 208 NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDF 264
+L L F + L +L++ N L +S+P F L +L+ ++L N +
Sbjct: 480 CQLEQLSPTAFNSLSSL------QVLNMASNQL--KSVPDGIFDRLTSLQKIWLHTNPW 530
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 93.0 bits (231), Expect = 2e-21
Identities = 34/126 (26%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
+ LSHN L I + NL L L +N + TL S L L +L L N +
Sbjct: 67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM----LETLRALYLGDNDFEVLPAE-IG 116
+ R F L+ L L+ N + P L L L L N + LP +
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQI--SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Query: 117 NLKNLQ 122
L
Sbjct: 185 KLPAWV 190
Score = 92.2 bits (229), Expect = 4e-21
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 4 ITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRL 60
+ LSHN L + L NL L L +N + + + + +P LR L+L N L
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 61 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI--- 115
+L F LEVL L N++ + F + L+ LYL N P E+
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 116 -GNLKNLQ 122
L L
Sbjct: 159 GNKLPKLM 166
Score = 77.2 bits (190), Expect = 5e-16
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLSSLPRG- 66
S +L +P L +L L +N + L + + L L L L N L+ +
Sbjct: 26 SKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
F P L LDL+ N+L +L F L+ L L L +N V+ ++ LQ
Sbjct: 84 FVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139
Score = 50.2 bits (120), Expect = 4e-07
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 34 NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG--FGAFPVLEVLDLTYNNLNEQSLP-G 90
Q+ +P SL +L+L N LS L L L L++N+L +
Sbjct: 27 KQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSE 82
Query: 91 NFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 123
F + LR L L N L + +L+ L++
Sbjct: 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116
Score = 46.8 bits (111), Expect = 5e-06
Identities = 38/227 (16%), Positives = 63/227 (27%), Gaps = 70/227 (30%)
Query: 58 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
+L ++P+ +LDL++NNL+ L L +L L N + +E
Sbjct: 28 QQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ NL+ + + N + + L L E L
Sbjct: 86 PVPNLRYL-------DLSSNH--LHTLDEFL-FSDLQAL------------------EVL 117
Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
L N + + R AF + + L L+
Sbjct: 118 L---------------------LYNNH------IVVVDR--NAFEDM---AQLQKLYLSQ 145
Query: 237 NNLNEQSLPGNFFM----LETLRALYLGDNDFEVLPAE-IGNLKNLQ 278
N + P L L L L N + LP + L
Sbjct: 146 NQI--SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190
Score = 38.3 bits (89), Expect = 0.003
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N L +L F L+A +L L N++ + F + L+ LYL N
Sbjct: 98 NHLHTLDEF--LFSDLQAL---EVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQISR 150
Query: 267 LPAEI----GNLKNLQIM 280
P E+ L L ++
Sbjct: 151 FPVELIKDGNKLPKLMLL 168
Score = 37.5 bits (87), Expect = 0.004
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 207 MNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFE 265
N LS L + L + L L++N+L + F + LR L L N
Sbjct: 48 HNNLSRLRAEW-TPTRL---TNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 266 VLPAEI-GNLKNLQI 279
L + +L+ L++
Sbjct: 102 TLDEFLFSDLQALEV 116
Score = 32.9 bits (75), Expect = 0.15
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLET---LRALYLGDN 262
N++S P +LDL+ N L + LP LYL +N
Sbjct: 146 NQISRFPVE--LIKDGNKLPKLMLLDLSSNKL--KKLPLTDLQKLPAWVKNGLYLHNN 199
Score = 27.1 bits (60), Expect = 9.4
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNL--EILTLFNNQI 37
+ + LS NKLK++P L L L L NN +
Sbjct: 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 90.1 bits (224), Expect = 2e-21
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
T I L N +K IPPG + L + L NNQI L + L L L L N+++
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
LP+ F L++L L N + L F L L L L DN + + L+
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKI--NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 120 NLQII 124
+Q +
Sbjct: 153 AIQTM 157
Score = 88.9 bits (221), Expect = 5e-21
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
RI LS+N++ E+ P L +L L L+ N+I LP SL L L++L L N+++
Sbjct: 59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
L F L +L L N L Q++ G F L ++ ++L N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKL--QTIAKGTFSPLRAIQTMHLAQN 162
Score = 78.5 bits (194), Expect = 3e-17
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-F 67
L EIP L + + L N I+ +P + S KLR ++L N++S L F
Sbjct: 19 RGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 68 GAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
L L L N + LP F L +L+ L L N L + +L NL
Sbjct: 77 QGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131
Score = 42.3 bits (100), Expect = 7e-05
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N + +P G AF + +DL+ N + L F L +L +L L N
Sbjct: 42 NTIKVIPPG--AFSPYKKL---RRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 267 LPAEI-GNLKNLQ 278
LP + L +LQ
Sbjct: 95 LPKSLFEGLFSLQ 107
Score = 41.6 bits (98), Expect = 1e-04
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N++S L AF L + L L N + LP F L +L+ L L N
Sbjct: 66 NQISELAPD--AFQGLRSL---NSLVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINC 118
Query: 267 LPAEI-GNLKNLQ 278
L + +L NL
Sbjct: 119 LRVDAFQDLHNLN 131
Score = 36.2 bits (84), Expect = 0.008
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
L+ +P T + L N + + +P F + LR + L +N
Sbjct: 21 KGLTEIPTNL--------PETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 267 LPAEI-GNLKNLQ 278
L + L++L
Sbjct: 71 LAPDAFQGLRSLN 83
Score = 34.6 bits (80), Expect = 0.025
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 262
N+++ L AF L +L L N L Q++ G F L ++ ++L N
Sbjct: 114 NKINCLRVD--AFQDLHNL---NLLSLYDNKL--QTIAKGTFSPLRAIQTMHLAQN 162
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 91.2 bits (227), Expect = 2e-21
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
+ LS +++ I G +L +L L L N I++L S L L+ L L+S
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
L G L+ L++ +N + LP F L L L L N + + L
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 121 LQII 124
+ ++
Sbjct: 175 MPLL 178
Score = 89.3 bits (222), Expect = 1e-20
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLS 61
+ LS N L+ + + L++L L +I+T+ SL L L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPAE--IGN 117
SL G F L+ L NL SL L+TL+ L + N + N
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 118 LKNLQ 122
L NL+
Sbjct: 148 LTNLE 152
Score = 84.3 bits (209), Expect = 7e-19
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 5 TRITLSHNKLKEIPPGLA-NLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLS 61
++ L + +L L+ L + +N I++ S+L L L+L N++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 62 SLPRG-FGAFPVLEV----LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI- 115
S+ + + LDL+ N + + F L+ L L N + +P I
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLKELALDTNQLKSVPDGIF 220
Query: 116 GNLKNLQII 124
L +LQ I
Sbjct: 221 DRLTSLQKI 229
Score = 79.2 bits (196), Expect = 4e-17
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-F 67
+IP L + + L L N + L S S P+L++L+L + ++ G +
Sbjct: 15 MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 68 GAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
+ L L LT N + QSL F L +L+ L + + L G+LK L+
Sbjct: 73 QSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Score = 60.0 bits (146), Expect = 1e-10
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEI----LTLFNNQIETLPTSLSSLPKLRILNLGMNR 59
+ LS NK++ I L L + + L L N + + +L+ L L N+
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211
Query: 60 LSSLPRG-FGAFPVLEVLDLTYN 81
L S+P G F L+ + L N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234
Score = 42.7 bits (101), Expect = 9e-05
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 208 NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFE 265
N L L F +FP L +LDL+ + Q++ G + L L L L N +
Sbjct: 38 NPLRHLGSYSFFSFPEL------QVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 266 VLPAEI-GNLKNLQ 278
L L +LQ
Sbjct: 90 SLALGAFSGLSSLQ 103
Score = 40.7 bits (96), Expect = 4e-04
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
L+SL L+ L++ +N + LP F L L L L N + +
Sbjct: 110 TNLASLENF--PIGHLKT---LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 268 PAEI-GNLKNLQIM 280
L + ++
Sbjct: 165 YCTDLRVLHQMPLL 178
Score = 40.7 bits (96), Expect = 4e-04
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
+ ++ G A+ L + L LT N + QSL F L +L+ L + +
Sbjct: 62 CEIQTIEDG--AYQSLSH---LSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 267 LPAEI-GNLKNLQ 278
L G+LK L+
Sbjct: 115 LENFPIGHLKTLK 127
Score = 38.0 bits (89), Expect = 0.002
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEV 266
+P T LDL++N L + L +FF L+ L L + +
Sbjct: 17 LNFYKIPDNL--------PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 267 LPAEI-GNLKNLQI 279
+ +L +L
Sbjct: 67 IEDGAYQSLSHLST 80
Score = 34.2 bits (79), Expect = 0.047
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNN 35
+ + + L N+LK +P G L +L+ + L N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 91.3 bits (227), Expect = 3e-21
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 126 ETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
E FLP ++E+ GHI +S AG+V L Y +K+ V GL E LA E++ +
Sbjct: 148 EAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPN----G 203
Query: 185 IKFTSIFPFMVDTGLCKN 202
I + + P +V+T L N
Sbjct: 204 IGVSVLCPMVVETKLVSN 221
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 93.1 bits (232), Expect = 4e-21
Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 61/279 (21%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ ++N++ +I P L L NL+ L+L NQ++ + +L+SL L L+L N++S+L
Sbjct: 202 ESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA 259
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
L L L N ++ S L L L L +N E + I NLKNL +
Sbjct: 260 -PLSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQLEDIS-PISNLKNLTYL 314
Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
+ N IS ++ + L L + L N+K
Sbjct: 315 -------TLYFNN-----ISDISPVSSLTKL------------------QRL--FFYNNK 342
Query: 185 IKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
+ + + + L I N++S L + T L L
Sbjct: 343 V--SDV------SSLANLTNINWLSAGHNQISDLT-PLANLTRI------TQLGLNDQAW 387
Query: 240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+ P N+ ++ + PA I + +
Sbjct: 388 T--NAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYT 424
Score = 90.8 bits (226), Expect = 2e-20
Identities = 55/281 (19%), Positives = 94/281 (33%), Gaps = 64/281 (22%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+T + +K I G+ L NL + NNQ+ + L +L KL + + N+++ +
Sbjct: 48 VTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI 105
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L L N + + L L L L N + A + L +LQ
Sbjct: 106 T-PLANLTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQ 160
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+ N+ ++ + + L L E L D ++
Sbjct: 161 L---SF-----GNQ-----VTDLKPLANLTTL------------------ERL--DISSN 187
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
K+ + I + L K ++ N++S + G L+ L L N
Sbjct: 188 KV--SDI------SVLAKLTNLESLIATNNQISDIT-PLGILTNLD------ELSLNGNQ 232
Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L + G L L L L +N L + L L
Sbjct: 233 LKD---IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE 269
Score = 85.8 bits (213), Expect = 1e-18
Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 50/275 (18%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ ++L+ N+LK+I LA+L NL L L NNQI L LS L KL L LG N++S++
Sbjct: 223 LDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNI 280
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L+L N L + S L+ L L L N+ + + +L LQ
Sbjct: 281 S-PLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQR 335
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+ N+ +S ++ + L N+ L A ++
Sbjct: 336 L-------FFYNNK-----VSDVSSLANLTNI------------------NWL--SAGHN 363
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
+I + + P T + + ++ P + + +I + N
Sbjct: 364 QI--SDLTPLANLTRI-TQLGLNDQAWTNAP--------VNYKANVSIPNTVKNVTGALI 412
Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
P + + N
Sbjct: 413 APATISDGGSYTEPDITWNLPSYTNEVSYTFSQPV 447
Score = 79.6 bits (197), Expect = 1e-16
Identities = 42/275 (15%), Positives = 85/275 (30%), Gaps = 62/275 (22%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
+ +I L L + S + L ++ L + S+ G
Sbjct: 9 TQDTPINQIFT-DTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVE 65
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF 128
L ++ + N L + + L L + + +N + + NL NL +
Sbjct: 66 YLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITP-LANLTNLTGL---- 117
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
+ N+ I+ + + L NL L + ++ I +
Sbjct: 118 ---TLFNNQ-----ITDIDPLKNLTNL------------------NRL--ELSSNTI--S 147
Query: 189 SIFPFMVDTGLCKNPKIKM----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSL 244
I + L ++ N+++ L LE LD++ N +++
Sbjct: 148 DI------SALSGLTSLQQLSFGNQVTDLK-PLANLTTLE------RLDISSNKVSD--- 191
Query: 245 PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L L +L +N + +G L NL
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITP-LGILTNLDE 225
Score = 69.2 bits (170), Expect = 4e-13
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 4/123 (3%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
R+ +NK+ ++ LANL N+ L+ +NQI L L++L ++ L L ++ P
Sbjct: 334 QRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAP 391
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
+ + + + N P + + N I
Sbjct: 392 VNY--KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTI 449
Query: 125 LET 127
+
Sbjct: 450 GKG 452
Score = 44.6 bits (106), Expect = 3e-05
Identities = 10/81 (12%), Positives = 21/81 (25%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
IT++ L+ P V++ P ++S ++ N S
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436
Query: 64 PRGFGAFPVLEVLDLTYNNLN 84
F + +
Sbjct: 437 NEVSYTFSQPVTIGKGTTTFS 457
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 89.3 bits (222), Expect = 1e-20
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
+ ++ NKL+ +P G+ LVNL L L NQ+++LP + SL KL L+LG N L S
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLK 119
LP+G F L+ L L N L + +P F L L+ L L +N + +P +L+
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Query: 120 NLQII 124
L+++
Sbjct: 206 KLKML 210
Score = 85.8 bits (213), Expect = 2e-19
Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
+ L+ NKL+ +P G+ L NLE L + +N+++ LP + L L L L N+L S
Sbjct: 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLK 119
LP F + L L L YN L QSLP F L +L+ L L +N + +P L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 120 NLQI 123
L+
Sbjct: 182 ELKT 185
Score = 84.6 bits (210), Expect = 5e-19
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
++ L NKL +P L L +L L +N+++TLP + L L L + N+L +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
LP G F L L L N L +SLP F L L L LG N+ + LP + L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 120 NLQII 124
+L+ +
Sbjct: 158 SLKEL 162
Score = 75.8 bits (187), Expect = 5e-16
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-F 67
S KL IP + + + L L +N++ +LP + L KLR+L L N+L +LP G F
Sbjct: 24 SSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 68 GAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
LE L +T N L Q+LP F L L L L N + LP + +L L
Sbjct: 82 KELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Score = 42.3 bits (100), Expect = 1e-04
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L +LP G F L L L N L +SLP F L L L LG N+ +
Sbjct: 95 NKLQALPIG--VFDQLVN---LAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 267 LPAEI-GNLKNLQ 278
LP + L +L+
Sbjct: 148 LPKGVFDKLTSLK 160
Score = 41.9 bits (99), Expect = 2e-04
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEV 266
N+L +LP G F L+ L +T N L Q+LP F L L L L N +
Sbjct: 71 NKLQTLPAG--IFKELKN---LETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 267 LPAEI-GNLKNLQ 278
LP + +L L
Sbjct: 124 LPPRVFDSLTKLT 136
Score = 40.0 bits (94), Expect = 5e-04
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEV 266
N+L SLP F L T L L YN L QSLP F L +L+ L L +N +
Sbjct: 119 NQLKSLPPR--VFDSLTK---LTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLKR 171
Query: 267 LPAEI-GNLKNLQI 279
+P L L+
Sbjct: 172 VPEGAFDKLTELKT 185
Score = 39.6 bits (93), Expect = 8e-04
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
+L+++P + T LDL N L SLP F L LR LYL DN +
Sbjct: 26 KKLTAIPSNI--------PADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQT 75
Query: 267 LPAEI-GNLKNLQ 278
LPA I LKNL+
Sbjct: 76 LPAGIFKELKNLE 88
Score = 38.0 bits (89), Expect = 0.003
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEV 266
N L SLP+G F L + L L N L + +P F L L+ L L +N +
Sbjct: 143 NELQSLPKG--VFDKLTSL---KELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 267 LPAEI-GNLKNLQ 278
+P +L+ L+
Sbjct: 196 VPEGAFDSLEKLK 208
Score = 32.6 bits (75), Expect = 0.15
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 4 ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNN 35
+ + L +N+LK +P G +L L++L L N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 88.0 bits (219), Expect = 1e-20
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
NL + + +P ++ + G IV + S+AG Y ASKF + GL A +L
Sbjct: 109 NLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDL 168
Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
RE ++ ++ P VDTG
Sbjct: 169 REA----NVRVVNVLPGSVDTGF 187
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 88.4 bits (220), Expect = 2e-20
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
N+ IL+T M + G+I ++S A G + Y ++KFA+ GL E+L EL
Sbjct: 117 NVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYREL 176
Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
I+ T++ P V+T +
Sbjct: 177 AP----LGIRVTTLCPGWVNTDM 195
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 88.0 bits (219), Expect = 2e-20
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
+ ++ + G + + S A VG N YCASK+ +RG +E+L EL++ ++
Sbjct: 120 VR-LIGERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDS----PLRLV 174
Query: 189 SIFPFMVDTGL 199
+++P + +
Sbjct: 175 NLYPSGIRSEF 185
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 90.7 bits (225), Expect = 3e-20
Identities = 46/286 (16%), Positives = 101/286 (35%), Gaps = 12/286 (4%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLS 61
T + +S N + E+ + +L L IL + +N+I+ L S +L L+L N+L
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKN 120
+ L+ LDL++N + + F + L+ L L E I +L
Sbjct: 83 KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140
Query: 121 LQIILETFLPDMMEKNRGHIVGIS-SMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
+++L +++ + + IV N + +V+ + ++
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
++K + + T + + +N + + F L + ++ L
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLS-NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259
Query: 240 NE----QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQIM 280
+ + L+ L + + F + I N+ I
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305
Score = 82.6 bits (204), Expect = 1e-17
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 23/157 (14%)
Query: 5 TRITLSHNKLKEIPPG---LANLVNLEILTLFNNQIETLPT--SLSSLPKLRILNLGMNR 59
+ L N+LKE+ + +L+ L + N + S L LN+ N
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410
Query: 60 LSSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GN 117
L+ F P ++VLDL N + +S+P LE L+ L + N + +P I
Sbjct: 411 LTDTI--FRCLPPRIKVLDLHSNKI--KSIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466
Query: 118 LKNLQII------------LETFLPDMMEKNRGHIVG 142
L +LQ I +L + KN G
Sbjct: 467 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 503
Score = 74.1 bits (182), Expect = 1e-14
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 4 ITRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLS 61
+ + + + + + + L NN + + L +L L L MN+L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
Query: 62 SLPRGFGAF---PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112
L + L+ LD++ N+++ G+ ++L +L + N
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415
Score = 69.1 bits (169), Expect = 4e-13
Identities = 48/294 (16%), Positives = 96/294 (32%), Gaps = 64/294 (21%)
Query: 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI------ETLPTSLSSLPKLRILNL 55
L + I + N I L + ++ N ++ S +SL L I +
Sbjct: 225 LTLNNIETTWNSFIRILQ-LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283
Query: 56 GMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPA 113
+ + F + + + T + + + + L +N
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 114 EI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV-GLPNLVPYCASKFAVRGLMEA 171
E G+L L+ + +++ N+ + +S +A + + +L
Sbjct: 342 ENCGHLTELETL-------ILQMNQ--LKELSKIAEMTTQMKSL---------------- 376
Query: 172 LAEELREDARNSKIKFTSIFPFMVDTGLCKNPK------IKMNRLSSLPRGFGAFPVLEA 225
++L D + + + G C K + N L+ F P
Sbjct: 377 --QQL--DISQNSVSYDE------KKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPR-- 422
Query: 226 FSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
+LDL N + +S+P LE L+ L + N + +P I L +LQ
Sbjct: 423 ---IKVLDLHSNKI--KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Score = 65.3 bits (159), Expect = 8e-12
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + +S N L + +++L L +N+I+++P + L L+ LN+ N+L S+
Sbjct: 401 LLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459
Query: 64 PRG-FGAFPVLEVLDLTYNNLN 84
P G F L+ + L N +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWD 481
Score = 63.0 bits (153), Expect = 4e-11
Identities = 41/291 (14%), Positives = 72/291 (24%), Gaps = 21/291 (7%)
Query: 5 TRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
+ LS N +P N+ L+ L L +E + + + L +
Sbjct: 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNL 121
L + + ++T+ L L + + + ++
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212
Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
L+T +S I+ L + L L + +
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272
Query: 182 NS---------KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
S + N IK +S S L
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNIKNFTVSGTR--MVHMLCPSKISPFLHL 329
Query: 233 DLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIG---NLKNLQI 279
D + N L N L L L L N + L +K+LQ
Sbjct: 330 DFSNNLL--TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Score = 37.2 bits (86), Expect = 0.008
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 264
N++ S+P+ L L++ N L +S+P G F L +L+ ++L N +
Sbjct: 431 NKIKSIPKQVVKLEAL------QELNVASNQL--KSVPDGIFDRLTSLQKIWLHTNPW 480
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 89.6 bits (222), Expect = 6e-20
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ N+L +P A+L +L+ + NNQ+ LP + L +N N+L+ LP
Sbjct: 103 EYLDACDNRLSTLPELPASLKHLD---VDNNQLTMLPELPALL---EYINADNNQLTMLP 156
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
+ LEVL + N L LP + E+L AL + N E LPA + +
Sbjct: 157 ELPTS---LEVLSVRNNQLTF--LPE---LPESLEALDVSTNLLESLPAVPVRNHHSEET 208
Query: 125 LETF 128
F
Sbjct: 209 EIFF 212
Score = 88.9 bits (220), Expect = 1e-19
Identities = 54/296 (18%), Positives = 88/296 (29%), Gaps = 83/296 (28%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + L+ L +P L + +L + N + +LP +S L L+ NRLS+L
Sbjct: 61 FSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPAS---LEYLDACDNRLSTL 115
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL-- 121
P + L+ LD+ N L LP L + +N +LP +L+ L
Sbjct: 116 PELPAS---LKHLDVDNNQL--TMLPEL---PALLEYINADNNQLTMLPELPTSLEVLSV 167
Query: 122 ---QIILETFLPDMMEK--------NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
Q+ TFLP++ E N + LP + E
Sbjct: 168 RNNQL---TFLPELPESLEALDVSTNL-----------LESLPAVPVRNHH-------SE 206
Query: 171 ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTT 230
R NR++ +P +
Sbjct: 207 ETEIFF--RCRE-------------------------NRITHIPENILSLDPTCT----- 234
Query: 231 ILDLTYNNLNEQSLPGNFFMLETLRALYLG-DNDFEVLPAEIGNLKNLQIMLEPRW 285
+ L N L S +T + Y G F + + L W
Sbjct: 235 -IILEDNPL--SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287
Score = 81.6 bits (201), Expect = 4e-17
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Query: 9 LSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL--SSLPKLRILNLGMNRLSSLPR 65
+N + + E L + L + + L L LSSLP
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPD 76
Query: 66 GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
P + VL++T N L SLP + +L L DN LP +LK+L +
Sbjct: 77 NLP--PQITVLEITQNAL--ISLPE---LPASLEYLDACDNRLSTLPELPASLKHLDV 127
Score = 60.0 bits (145), Expect = 4e-10
Identities = 23/105 (21%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 23 NLVNLEILTLFNNQIETLPTSL----SSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDL 78
N +L F N I K + N SL + L L
Sbjct: 9 NNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQL 66
Query: 79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
NL SLP N + L + N LP +L+ L
Sbjct: 67 NRLNL--SSLPDNLP--PQITVLEITQNALISLPELPASLEYLDA 107
Score = 33.8 bits (77), Expect = 0.091
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
N +S + + A+ L N NE ++ L L + L
Sbjct: 20 NTISGTYADYFS-----AWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74
Query: 268 PAEIG-NLKNL 277
P + + L
Sbjct: 75 PDNLPPQITVL 85
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 85.9 bits (213), Expect = 7e-20
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
+I S+NK+ +I G + + L +N++E + + L L+ L L NR++
Sbjct: 60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
+ F + +L L N + ++ G F L +L L L N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQI--TTVAPGAFDTLHSLSTLNLLAN 163
Score = 84.3 bits (209), Expect = 3e-19
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 5 TRITLSHNKLKEIPP--GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
+ L++N+ + L L + NN+I + + + + L NRL
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNL 118
++ F L+ L L N + + +F L ++R L L DN + L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 119 KNLQII 124
+L +
Sbjct: 153 HSLSTL 158
Score = 72.4 bits (178), Expect = 5e-15
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLSSLPRG- 66
S+ KL +IP + L L NN+ L + LP+LR +N N+++ + G
Sbjct: 19 SNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76
Query: 67 FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 123
F + + LT N L +++ F LE+L+ L L N + + L ++++
Sbjct: 77 FEGASGVNEILLTSNRL--ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133
Score = 41.2 bits (97), Expect = 2e-04
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 186 KFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
+FT + + L + KI N+++ + G AF + LT N L ++
Sbjct: 43 EFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--AFEGASGV---NEILLTSNRL--EN 95
Query: 244 LP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
+ F LE+L+ L L N + + L ++++
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133
Score = 36.9 bits (86), Expect = 0.004
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 12/73 (16%)
Query: 209 RLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 268
+L+ +P +T L L N G F L LR + +N +
Sbjct: 22 KLNKIPEHI--------PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE 73
Query: 269 A----EIGNLKNL 277
+ +
Sbjct: 74 EGAFEGASGVNEI 86
Score = 35.8 bits (83), Expect = 0.013
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N + L G F L ++ + N + + G F + + L N E
Sbjct: 42 NEFTVLEAT-GIFKKLPQL---RKINFSNNKI--TDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 267 LPAEI-GNLKNLQ 278
+ ++ L++L+
Sbjct: 96 VQHKMFKGLESLK 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 89.8 bits (222), Expect = 7e-20
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + L+H L + L L+ + L L +N++ LP +L++L L +L N L ++
Sbjct: 443 VRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK---- 119
G P L+ L L N L + + L L L N L
Sbjct: 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560
Query: 120 NLQIIL 125
++ IL
Sbjct: 561 SVSSIL 566
Score = 60.5 bits (146), Expect = 2e-10
Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 17/158 (10%)
Query: 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGM 57
M + + L+ L + + L + + + L +R+L+L
Sbjct: 392 MRALDPLLYEKETLQYFS-TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450
Query: 58 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 117
L+ L ++ LDL++N L ++LP L L L DN E + + N
Sbjct: 451 KDLTVLC-HLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVD-GVAN 506
Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
L LQ + ++ NR + +++ +V P L
Sbjct: 507 LPRLQEL-------LLCNNR--LQQSAAIQPLVSCPRL 535
Score = 49.0 bits (116), Expect = 1e-06
Identities = 37/209 (17%), Positives = 64/209 (30%), Gaps = 32/209 (15%)
Query: 77 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF------LP 130
+ + + E L L VL +E+ + K LQ + +
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 389
Query: 131 DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSI 190
+M + ++ L + P + +D R+ + S+
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLKAVDP--------------MRAAYLDDLRSKFLLENSV 435
Query: 191 FPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM 250
+ + L+ L LE T LDL++N L ++LP
Sbjct: 436 LKMEYADVRVLH--LAHKDLTVLCH-------LEQLLLVTHLDLSHNRL--RALPPALAA 484
Query: 251 LETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L L L DN E + + NL LQ
Sbjct: 485 LRCLEVLQASDNALENVD-GVANLPRLQE 512
Score = 44.7 bits (105), Expect = 3e-05
Identities = 30/266 (11%), Positives = 71/266 (26%), Gaps = 48/266 (18%)
Query: 26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLD-------- 77
+ + L ++ E ++ +L L + + + L + L+ L+
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 386
Query: 78 -LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKN 136
+ L L+ L D ++ + L+ + +
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446
Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
++ + + L + L D +++++ +
Sbjct: 447 HLAHKDLTVLCHLEQLLLV------------------THL--DLSHNRLR-------ALP 479
Query: 197 TGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFML 251
L +++ N L ++ G P L+ L L N L + +
Sbjct: 480 PALAALRCLEVLQASDNALENVD-GVANLPRLQ------ELLLCNNRLQQSAAIQPLVSC 532
Query: 252 ETLRALYLGDNDFEVLPAEIGNLKNL 277
L L L N L +
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAEM 558
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 84.5 bits (210), Expect = 3e-19
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
N+ + LP + G ++ I+S AG P Y ASK A+RGL +A +E
Sbjct: 106 NVIVPAELSRQLLP-ALRAASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEE 164
Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
+ I+ +++ P +T +
Sbjct: 165 ANN----GIRVSTVSPGPTNTPM 183
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 84.2 bits (209), Expect = 5e-19
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
NLK + + M ++ GHI I+S+A + YC SKF RGL+E +
Sbjct: 117 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYA 176
Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
R+ N ++ T + P V T +
Sbjct: 177 RK--CN--VRITDVQPGAVYTPM 195
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 83.4 bits (207), Expect = 1e-18
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
N+ L ++ L M +N G I+ ISS+AG P+ YC +KFAV + E +
Sbjct: 118 NVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISEN----V 173
Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
RE+ S ++ +I P V T L
Sbjct: 174 REEVAASNVRVMTIAPSAVKTEL 196
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 83.0 bits (206), Expect = 2e-18
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
N+K + + LP M + G I+ I S+ + +P YCA+KFAVR + + L
Sbjct: 112 NIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDG----L 167
Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
R+++ N I+ T + P +V++ L
Sbjct: 168 RQESTN--IRVTCVNPGVVESEL 188
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 83.6 bits (207), Expect = 2e-18
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 19/152 (12%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
IT ++ + I G+ L NL L L +NQI L L +L K+ L L N L ++
Sbjct: 43 ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV 100
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
++ LDLT + + + L L+ LYL N + + L NLQ
Sbjct: 101 S-AIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQY 155
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
+ + + +S + + L L
Sbjct: 156 L-------SIGNAQ-----VSDLTPLANLSKL 175
Score = 74.3 bits (183), Expect = 3e-15
Identities = 46/276 (16%), Positives = 90/276 (32%), Gaps = 75/276 (27%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+I + + + A+L + L+ F + T+ + L L L L N+++ L
Sbjct: 21 AIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL 78
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
+ L+L+ N L S L++++ L L + + L NLQ+
Sbjct: 79 A-PLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+ ++ N+ I++++ + GL NL + L
Sbjct: 134 L-------YLDLNQ-----ITNISPLAGLTNL------------------QYLS------ 157
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
I ++S L L L N +++ S
Sbjct: 158 ---------------------IGNAQVSDLT-PLANLSKLT------TLKADDNKISDIS 189
Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
+ L L ++L +N + + N NL I
Sbjct: 190 PLAS---LPNLIEVHLKNNQISDVSP-LANTSNLFI 221
Score = 72.0 bits (177), Expect = 2e-14
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + L N++ I P LA L NL+ L++ N Q+ L L++L KL L N++S +
Sbjct: 131 LQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI 188
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
+ P L + L N +++ S L + L + P N +
Sbjct: 189 S-PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244
Query: 124 IL 125
++
Sbjct: 245 VV 246
Score = 67.4 bits (165), Expect = 6e-13
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ +++ + ++ ++ P LANL L L +N+I + L+SLP L ++L N++S +
Sbjct: 153 LQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV 210
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
L ++ LT + + P + + + G + + PA I +
Sbjct: 211 S-PLANTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYA 266
Score = 39.3 bits (92), Expect = 0.001
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + L +N++ ++ P LAN NL I+TL N I P + L + N+ +
Sbjct: 197 LIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQP--VFYNNNLVVPNVVKGPSGAP 253
Query: 64 --PRGFGAFPVLEVLDLTYNNLNEQS 87
P +LT+N + +
Sbjct: 254 IAPATISDNGTYASPNLTWNLTSFIN 279
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 85.2 bits (210), Expect = 3e-18
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 19/152 (12%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
I +I +++ +K + G+ L N+ L L N++ + L++L L L L N++ L
Sbjct: 45 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL 102
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L+ L L +N +++ + L L +LYLG+N + + L L
Sbjct: 103 S-SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDITV-LSRLTKLDT 157
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
+ +E N+ IS + + GL L
Sbjct: 158 L-------SLEDNQ-----ISDIVPLAGLTKL 177
Score = 82.1 bits (202), Expect = 3e-17
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ L NK+K++ L +L L+ L+L +N I + L LP+L L LG N+++ +
Sbjct: 90 GWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT 147
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
L+ L L N +++ L L+ LYL N L + LKNL ++
Sbjct: 148 -VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVL 202
Score = 81.7 bits (201), Expect = 4e-17
Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 52/278 (18%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ L + + L +++ + N+ I+++ + LP + L L N+L+ +
Sbjct: 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 80
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L L N + + S + L+ L++L L N + + +L L+
Sbjct: 81 K-PLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDING-LVHLPQLES 135
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+ + N+ I+ + + L L + L ++
Sbjct: 136 L-------YLGNNK-----ITDITVLSRLTKL------------------DTL--SLEDN 163
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
+I + I P T L +N + N +S L L +L+L
Sbjct: 164 QI--SDIVPLAGLTKL-QNLYLSKNHISDL-------RALAGLKNLDVLELFSQEC-LNK 212
Query: 244 LPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNLQI 279
+ L + D ++ G+ + +
Sbjct: 213 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 250
Score = 79.4 bits (195), Expect = 2e-16
Identities = 57/292 (19%), Positives = 96/292 (32%), Gaps = 69/292 (23%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
+K+I P L + T + L + + + + S+ G
Sbjct: 6 TVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQ 62
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF 128
P + L L N L + L+ L L+L +N + L + + +LK L+ +
Sbjct: 63 YLPNVTKLFLNGNKLTDIK---PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSL---- 114
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
+E N IS + G+V LP L E L N+KI T
Sbjct: 115 ---SLEHNG-----ISDINGLVHLPQL------------------ESL--YLGNNKI--T 144
Query: 189 SIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
I T L + K+ N++S + L+ L L+ N++++
Sbjct: 145 DI------TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQ------NLYLSKNHISDLR 191
Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIG-------NLKNLQIMLEPRWVIS 288
L+ L L L + P +KN L +IS
Sbjct: 192 ---ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240
Score = 72.4 bits (177), Expect = 4e-14
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + L +NK+ +I L+ L L+ L+L +NQI + L+ L KL+ L L N +S L
Sbjct: 133 LESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL 190
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNL 121
L+VL+L + L + D ++ G+ +
Sbjct: 191 R-ALAGLKNLDVLELFSQEC-LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248
Query: 122 QII 124
+
Sbjct: 249 NVK 251
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 82.7 bits (205), Expect = 3e-18
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
N+ L I + LP KN G IV + S+AG P YCASKFAV ++ L
Sbjct: 147 NVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDS----L 202
Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
R++ N+KI+ I P +V+T
Sbjct: 203 RKELINTKIRVILIAPGLVETEF 225
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 83.4 bits (206), Expect = 9e-18
Identities = 45/291 (15%), Positives = 96/291 (32%), Gaps = 24/291 (8%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLS 61
++LS N + E+ ++ L L +L L +N+I +L + L L++ NRL
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEIGNLKN 120
++ L LDL++N+ + + F L L L L F L + +L
Sbjct: 114 NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
I+L+ + + ++ + + + L
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL-------- 223
Query: 181 RNSKIKFTSIFPFMVDTGLCK-NPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
+ S IK + T L + + ++ ++ F F + Y N+
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 240 NEQSLPGNFF---------MLETLRALYLGDNDFEVLPAEIGN-LKNLQIM 280
++ L++L ++ + F + + + I
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334
Score = 83.0 bits (205), Expect = 1e-17
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG- 66
S+ L +P L + L+L N I L +S L +LR+L L NR+ SL
Sbjct: 38 YSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95
Query: 67 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNLQII 124
F LE LD+++N L Q++ + +LR L L NDF+VLP E GNL L +
Sbjct: 96 FLFNQDLEYLDVSHNRL--QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151
Score = 74.5 bits (183), Expect = 7e-15
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-----SSLPKLRILNLGMNR 59
+ L N LK N+ L + + +L + + + +LNL N
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439
Query: 60 LSSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GN 117
L+ F P ++VLDL N + S+P + L+ L+ L + N + +P +
Sbjct: 440 LTGSV--FRCLPPKVKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495
Query: 118 LKNLQII 124
L +LQ I
Sbjct: 496 LTSLQYI 502
Score = 73.8 bits (181), Expect = 1e-14
Identities = 51/313 (16%), Positives = 85/313 (27%), Gaps = 51/313 (16%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLSS 62
+ +SHN+L+ I + +L L L N + LP +L KL L L +
Sbjct: 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGN---FFMLETLRALYLGDND------------ 107
L L L +L + G + L+L +
Sbjct: 161 LD--LLPVAHLH-LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217
Query: 108 -------FEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV-PYC 159
+ N + L L N ++ V L P
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277
Query: 160 ASKFAVRGL--------------MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKI 205
+ L AL + E +N F+ + V + +
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM-NIKML 336
Query: 206 KMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265
++ + P S T L+ T N S+ L+ L+ L L N +
Sbjct: 337 SISDTPFIHMVCPPSP-----SSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLK 390
Query: 266 VLPAEIGNLKNLQ 278
KN+
Sbjct: 391 NFFKVALMTKNMS 403
Score = 70.3 bits (172), Expect = 2e-13
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
T + + N + + L L+ L L N ++ + L L+S
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 63 LPRG-----FGAFPVLEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFEVLPAE 114
L + VL+L+ N L + LP ++ L L +N +P +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK------VKVLDLHNNRIMSIPKD 468
Query: 115 IGNLKNLQ 122
+ +L+ LQ
Sbjct: 469 VTHLQALQ 476
Score = 62.6 bits (152), Expect = 5e-11
Identities = 46/302 (15%), Positives = 82/302 (27%), Gaps = 45/302 (14%)
Query: 5 TRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSLP-KLRILNLGMNRL 60
+ LS N +P NL L L L + L ++ L +L+L +
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183
Query: 61 SSLPRGFGAFPVLEVLDLTYNNLNEQSLP----GNFFMLETLRALYLGDNDFEVLPAEIG 116
P VL L ++ + S+ N L + L D + + L +
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG------------IVGLPNLVPYCASKFA 164
L +L L + + + I + + S+ A
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303
Query: 165 VRGLM-----------------EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM 207
++ LM AE + S F + +
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF-TFLNFTQ 362
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
N + F L+ L L N L ++ M + + +L D L
Sbjct: 363 NVFTDSV--FQGCSTLKR---LQTLILQRNGL--KNFFKVALMTKNMSSLETLDVSLNSL 415
Query: 268 PA 269
+
Sbjct: 416 NS 417
Score = 62.6 bits (152), Expect = 6e-11
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 4 ITRITLSHNKLKE-IPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
I + LS N L + L +++L L NN+I ++P ++ L L+ LN+ N+L S
Sbjct: 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Query: 63 LPRG-FGAFPVLEVLDLTYNN 82
+P G F L+ + L N
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNP 508
Score = 59.9 bits (145), Expect = 4e-10
Identities = 47/292 (16%), Positives = 92/292 (31%), Gaps = 60/292 (20%)
Query: 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI------ETLPTSLSSLPKLRILNL 55
+ + I + ++ +E L ++N I E S ++L L I ++
Sbjct: 254 VTLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312
Query: 56 GMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA 113
+ F + + L+ ++ + + L N F
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDT--PFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370
Query: 114 EI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEA 171
+ LK LQ + ++++N + +A + + +L
Sbjct: 371 QGCSTLKRLQTL-------ILQRNG--LKNFFKVALMTKNMSSL---------------- 405
Query: 172 LAEELREDARNSKIKFTSIFPFMVDTGLCKNP-KIKMNRLSS--LPRG-FGAFPVLEAFS 227
E + + NS C I + LSS L F P
Sbjct: 406 ---ETLDVSLNS-------LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK---- 451
Query: 228 FTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
+LDL N + S+P + L+ L+ L + N + +P + L +LQ
Sbjct: 452 -VKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500
Score = 45.6 bits (108), Expect = 2e-05
Identities = 46/333 (13%), Positives = 90/333 (27%), Gaps = 64/333 (19%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFN--NQIETLPTSLSSLPKLRILNLGMNRLSS 62
T + LS K +++ ++L + L I+ T +P +L+L + S
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208
Query: 63 LPR----GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE--------TLRALYLGDNDFE- 109
A L++ ++ N+ N Q L L TL+ +
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268
Query: 110 -VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
++ L I T + + + I + N V F+ L
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL----FSKEAL 324
Query: 169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLE--- 224
AE + S F + + N + L+
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSF-TFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 225 ------------AFSFTTILDLTYNNLNEQSLP-GNFFML-------------------- 251
A + L +++ SL +
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443
Query: 252 ------ETLRALYLGDNDFEVLPAEIGNLKNLQ 278
++ L L +N +P ++ +L+ LQ
Sbjct: 444 VFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQ 476
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 79.9 bits (198), Expect = 1e-17
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
NL + L+ FL + +V S ++ + +P Y ++K+A R L+ E
Sbjct: 111 NLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARL-IPYGGGYVSTKWAARALVRTFQIE- 168
Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
N ++F + P VDT
Sbjct: 169 -----NPDVRFFELRPGAVDTYF 186
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 78.8 bits (195), Expect = 2e-17
Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 16/156 (10%)
Query: 1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
M +T ITL++ + ++ G+ N++ LT+ N +S L L L + +
Sbjct: 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDV 100
Query: 61 SSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK 119
+S L +LD++++ ++ L L + ++ L N + L
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLP 159
Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
L+ + ++ + + GI P L
Sbjct: 160 ELKSL-------NIQFDG-----VHDYRGIEDFPKL 183
Score = 66.1 bits (162), Expect = 4e-13
Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 17/153 (11%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
L + I A + +L +TL N + L T + ++ L + ++
Sbjct: 25 YLNGLLGQSSTANITE--AQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY 81
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 122
LE L + ++ +P N L +L L + + + I L +
Sbjct: 82 N-PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139
Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
I + + I+ + + LP L
Sbjct: 140 SI-----------DLSYNGAITDIMPLKTLPEL 161
Score = 58.0 bits (141), Expect = 3e-10
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 5 TRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
T + +SH+ + + L + + L N T L +LP+L+ LN+ + +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174
Query: 64 PRGFGAFPVLEVLDLTYNNLN 84
RG FP L L +
Sbjct: 175 -RGIEDFPKLNQLYAFSQTIG 194
Score = 49.2 bits (118), Expect = 3e-07
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
I LS+N L L L+ L + + + + PKL L +
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196
Score = 31.1 bits (71), Expect = 0.38
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
T+LD++++ ++ L L + ++ L N + L L+
Sbjct: 115 TLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163
Score = 30.7 bits (70), Expect = 0.43
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 278
L + ++ +P N L +L L + + + I L +
Sbjct: 91 ERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 79.9 bits (198), Expect = 2e-17
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
N K L + LP M+E+N GHI+ I S AG Y A+K VR L
Sbjct: 106 NNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN----L 161
Query: 177 REDARNSKIKFTSIFPFMVDT 197
R D + ++ T I P +V
Sbjct: 162 RTDLHGTAVRVTDIEPGLVGG 182
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 81.7 bits (202), Expect = 2e-17
Identities = 45/287 (15%), Positives = 79/287 (27%), Gaps = 69/287 (24%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+T + S NK+ E+ ++ L L N I L L+ +L L+ N+L+ +
Sbjct: 172 LTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI 227
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L D + N L E + L L L+ D + + + L
Sbjct: 228 D--VTPLTQLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDLLEID--LTHNTQLIY 279
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+ E + + L L
Sbjct: 280 FQAEGCRKIKELD------------VTHNTQL------------------YLLD----CQ 305
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
T + L +NPK+ L+ L L L +
Sbjct: 306 AAGITELD-------LSQNPKLVYLYLNNTELTELD--VSHNTKL------KSLSCVNAH 350
Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRW 285
+ + S G + L + + +P E +L I + P
Sbjct: 351 IQDFSSVGK---IPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394
Score = 80.1 bits (198), Expect = 8e-17
Identities = 45/281 (16%), Positives = 76/281 (27%), Gaps = 71/281 (25%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+T + ++ + ++ G+ L L L +N I TL LS L L N+L++L
Sbjct: 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL 100
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L+ N L + + L L N + + + L
Sbjct: 101 D--VTPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLTEID--VSHNTQLTE 152
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+ + + L L D +
Sbjct: 153 LDCHLN------------KKITKLDVTPQTQL------------------TTL--DCSFN 180
Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
KI T + + +N + N ++ L L T LD + N
Sbjct: 181 KI--TEL-------DVSQNKLLNRLNCDTNNITKLD--LNQNIQL------TFLDCSSNK 223
Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L + L L N L + L L
Sbjct: 224 LT--EID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTT 258
Score = 71.6 bits (176), Expect = 6e-14
Identities = 50/316 (15%), Positives = 84/316 (26%), Gaps = 101/316 (31%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+T++ + N + + L+ NL L +N++ L ++ L KL LN N+L+ L
Sbjct: 66 LTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL 121
Query: 64 PRGFGAFPVLEVLDLTYNNL------------------NEQSLPGNFFMLETLRALYLGD 105
P+L L+ N L N++ + L L
Sbjct: 122 D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179
Query: 106 NDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
N L + K L + + N I+ + + L
Sbjct: 180 NKITELD--VSQNKLLNRL-------NCDTNN-----ITKL-DLNQNIQL---------- 214
Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAF 220
L D ++K+ T I + ++ N L+ L
Sbjct: 215 --------TFL--DCSSNKL--TEI-------DVTPLTQLTYFDCSVNPLTELD--VSTL 253
Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGN------------------FFMLETLRALYLGDN 262
L T L +L E L N L L
Sbjct: 254 SKL------TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA 307
Query: 263 DFEVLPAEIGNLKNLQ 278
L + L
Sbjct: 308 GITELD--LSQNPKLV 321
Score = 71.6 bits (176), Expect = 6e-14
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 8/126 (6%)
Query: 7 ITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR 65
I ++I + + L +L I L LS PKL L L L+ L
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD- 334
Query: 66 GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIIL 125
L+ L ++ + S G + L + + +P E +L I +
Sbjct: 335 -VSHNTKLKSLSCVNAHIQDFSSVGK---IPALNNNFEAEGQTITMPKETLTNNSLTIAV 390
Query: 126 ETFLPD 131
L D
Sbjct: 391 SPDLLD 396
Score = 56.6 bits (137), Expect = 4e-09
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 9/103 (8%)
Query: 22 ANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81
N + +T+ S L L L+ + ++ + G L L T N
Sbjct: 18 DNFASEVAAAFEMQATDTI--SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN 74
Query: 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
N+ +L L L N L + L L +
Sbjct: 75 NI--TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 78.6 bits (194), Expect = 3e-17
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
+ L N+L +P G+ +L L +L L NQ+ LP+++ L L+ L + N+L+
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
LPRG L L L N L +S+P G F L +L YL N
Sbjct: 127 LPRGIERLTHLTHLALDQNQL--KSIPHGAFDRLSSLTHAYLFGN 169
Score = 75.9 bits (187), Expect = 3e-16
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
+ L N++ ++ PG+ +L+NL+ L L +NQ+ LP + SL +L +L+LG N+L+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
LP F L+ L + N L LP L L L L N + +P L +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKL--TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 121 LQII 124
L
Sbjct: 161 LTHA 164
Score = 66.3 bits (162), Expect = 7e-13
Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 13 KLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-FGAF 70
+ +P G+ N +IL L +NQI L SL L+ L LG N+L +LP G F +
Sbjct: 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87
Query: 71 PVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
L VLDL N L LP F L L+ L++ N LP I L +L
Sbjct: 88 TQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLT 138
Score = 45.5 bits (108), Expect = 8e-06
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT----SLSSLPKLRILN 54
+ + + NKL E+P G+ L +L L L NQ++++P LSSL +
Sbjct: 114 LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168
Score = 39.3 bits (92), Expect = 9e-04
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L +LP G V ++ + T+LDL N L LP F L L+ L++ N
Sbjct: 74 NQLGALPVG-----VFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 267 LPAEIGNLKNLQ 278
LP I L +L
Sbjct: 127 LPRGIERLTHLT 138
Score = 38.5 bits (90), Expect = 0.002
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
N+L+ LP V + L + N L LP L L L L N + +
Sbjct: 98 NQLTVLPSA-----VFDRLVHLKELFMCCNKL--TELPRGIERLTHLTHLALDQNQLKSI 150
Query: 268 PAEI-GNLKNLQ 278
P L +L
Sbjct: 151 PHGAFDRLSSLT 162
Score = 35.1 bits (81), Expect = 0.023
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 209 RLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 268
R +S+P G IL L N + + PG F L L+ LYLG N LP
Sbjct: 30 RHASVPAGIPTN--------AQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALP 80
Query: 269 AEI-GNLKNLQ 278
+ +L L
Sbjct: 81 VGVFDSLTQLT 91
Score = 30.8 bits (70), Expect = 0.46
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQ 36
T + L N+LK IP G L +L LF N
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 78.0 bits (193), Expect = 6e-17
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
+ ++ ++V I S A YCA K+AV+GL+E++ EL+ +K
Sbjct: 114 LVKRYKDQP-VNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKG----KPMKI 168
Query: 188 TSIFPFMVDTGL 199
+++P + T
Sbjct: 169 IAVYPGGMATEF 180
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 78.4 bits (194), Expect = 9e-17
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 117 NLKNLQIILETFLPDMMEKN--RGHIVGISSMAG--IVGLPNLVPYCASKFAVRGLMEAL 172
N+ L I M E+N GHI+ I+SM+G ++ L Y A+K+AV L E L
Sbjct: 142 NVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGL 201
Query: 173 AEELREDARNSKIKFTSIFPFMVDTGL 199
+ELRE + I+ T I P +V+T
Sbjct: 202 RQELRE--AQTHIRATCISPGVVETQF 226
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 77.6 bits (192), Expect = 1e-16
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
NL L + LP ++ +++G +V +SS+AG V + N Y A+KF V E L
Sbjct: 115 NLLGLMYMTRAALPHLL-RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSET----L 169
Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
R++ ++ I P DT L
Sbjct: 170 RQEVTERGVRVVVIEPGTTDTEL 192
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 78.1 bits (193), Expect = 1e-16
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
LP M E+ G +V ISS G + Y A+K A+ L E LA+E+
Sbjct: 121 LLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAP 171
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 75.9 bits (187), Expect = 2e-16
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
++++ L+ L + L L N IE + +SLS + LRIL+LG N + +
Sbjct: 32 GMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDA 90
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
LE L ++YN + S L LR LY+ +N EI L L
Sbjct: 91 VADTLEELWISYNQIASLS---GIEKLVNLRVLYMSNNKITNW-GEIDKLAAL 139
Score = 67.0 bits (164), Expect = 3e-13
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
LS N +++I L+ + NL IL+L N I+ + + L L + N+++SL G
Sbjct: 55 LSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIE 112
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
L VL ++ N + L+ L L L N
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Score = 60.5 bits (147), Expect = 4e-11
Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 16/154 (10%)
Query: 5 TRITLSHNKLKEI-PPGLANLVNLEILTLFN--NQIETLPTSLSSLPKLRILNLGMNRLS 61
+ T + ++ E + L IE + +LS+L + L L N +
Sbjct: 2 AKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE 61
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
+ L +L L N + + + + +TL L++ N L + I L NL
Sbjct: 62 KI-SSLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIASL-SGIEKLVNL 117
Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
+++ M N+ I + + L L
Sbjct: 118 RVL-------YMSNNK--ITNWGEIDKLAALDKL 142
Score = 27.0 bits (60), Expect = 7.8
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
L + + + L+ + L L N+ E + + + ++NL+I
Sbjct: 30 LHGMIPPIEK--MDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRI 74
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 76.9 bits (190), Expect = 3e-16
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 117 NLKNLQIILETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
N+K L LP ++ G IV + S+AG P Y +K V
Sbjct: 129 NIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLN---- 184
Query: 176 LREDARNSKIKFTSIFPFMVDT 197
LR D + + ++ T++ P + ++
Sbjct: 185 LRCDLQGTGVRVTNLEPGLCES 206
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 77.8 bits (192), Expect = 3e-16
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
FLPDM + G ++ S+ G++GLP YCASKFA+ GL E+LA L +
Sbjct: 125 FLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLP----FGVHL 180
Query: 188 TSIFPFMVDT 197
+ I V T
Sbjct: 181 SLIECGPVHT 190
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 77.0 bits (190), Expect = 3e-16
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 19/152 (12%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
I +I +++ +K + G+ L N+ L L N++ + L++L L L L N++ L
Sbjct: 48 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL 105
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L+ L L +N +++ + L L +LYLG+N + + L L
Sbjct: 106 S-SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDITV-LSRLTKLDT 160
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
+ +E N+ IS + + GL L
Sbjct: 161 LS-------LEDNQ-----ISDIVPLAGLTKL 180
Score = 74.7 bits (184), Expect = 2e-15
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ L NK+K++ L +L L+ L+L +N I + L LP+L L LG N+++ +
Sbjct: 93 GWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT 150
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
L+ L L N +++ L L+ LYL N L + LKNL ++
Sbjct: 151 -VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVL 205
Score = 73.5 bits (181), Expect = 5e-15
Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 19/152 (12%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ L + + L +++ + N+ I+++ + LP + L L N+L+ +
Sbjct: 26 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 83
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L L N + + S + L+ L++L L N + + +L L+
Sbjct: 84 K-PLANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISDING-LVHLPQLES 138
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
+ + N+ I+ + + L L
Sbjct: 139 L-------YLGNNK-----ITDITVLSRLTKL 158
Score = 70.1 bits (172), Expect = 7e-14
Identities = 55/277 (19%), Positives = 93/277 (33%), Gaps = 64/277 (23%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
+K+I L + T + L + + + + S+ G
Sbjct: 9 TVPTPIKQIFS-DDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQ 65
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF 128
P + L L N L + L+ L L+L +N + L + + +LK L+ +
Sbjct: 66 YLPNVTKLFLNGNKLTDIK---PLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL---- 117
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
+E N IS + G+V LP L E L N+KI T
Sbjct: 118 ---SLEHNG-----ISDINGLVHLPQL------------------ESL--YLGNNKI--T 147
Query: 189 SIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
I T L + K+ N++S + L+ L L+ N++++
Sbjct: 148 DI------TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQ------NLYLSKNHISDLR 194
Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM 280
L+ L L L E L I + NL +
Sbjct: 195 ---ALAGLKNLDVLELFSQ--ECLNKPINHQSNLVVP 226
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSS 62
+ + LS N + ++ LA L NL++L LF+ + P + S+L + L +
Sbjct: 180 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQS 87
P E ++ ++ +
Sbjct: 239 -PEIISDDGDYEKPNVKWHLPEFTN 262
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 75.0 bits (185), Expect = 3e-16
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
T + L N+ +P L+N +L ++ L NN+I TL S++ +L L L NRL +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
P F L +L L N++ +P G F L L L +G N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDI--SVVPEGAFNDLSALSHLAIGAN 136
Score = 73.5 bits (181), Expect = 1e-15
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FG 68
S+ LK +P G+ ++ L L NQ +P LS+ L +++L NR+S+L F
Sbjct: 18 SNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQII 124
L L L+YN L + +P F L++LR L L ND V+P +L L +
Sbjct: 76 NMTQLLTLILSYNRL--RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
Score = 39.2 bits (92), Expect = 7e-04
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 206 KMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 264
N+ + +P+ + L T++DL+ N + +L +F + L L L N
Sbjct: 39 DGNQFTLVPKELSNYKHL------TLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRL 90
Query: 265 EVLPAEI-GNLKNLQI 279
+P LK+L++
Sbjct: 91 RCIPPRTFDGLKSLRL 106
Score = 38.8 bits (91), Expect = 0.001
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
NR+S+L + L L+YN L + +P F L++LR L L ND V
Sbjct: 64 NRISTLSNQ-----SFSNMTQLLTLILSYNRL--RCIPPRTFDGLKSLRLLSLHGNDISV 116
Query: 267 LPAEI-GNLKNLQ 278
+P +L L
Sbjct: 117 VPEGAFNDLSALS 129
Score = 38.8 bits (91), Expect = 0.001
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 209 RLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 268
L LP+G P T L L N +P + L + L +N L
Sbjct: 21 GLKVLPKGI---P-----RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLS 70
Query: 269 AEI-GNLKNLQ 278
+ N+ L
Sbjct: 71 NQSFSNMTQLL 81
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 75.4 bits (186), Expect = 8e-16
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 20/152 (13%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ ++ ++ + G+ NL+ L L +NQI L + L L KL L++ NRL +L
Sbjct: 43 VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNL 100
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
L L L N L + + L+ L L + +N + + +G L L++
Sbjct: 101 N--GIPSACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEV 154
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
+ + N I++ G+ L +
Sbjct: 155 L-------DLHGNE-----ITNTGGLTRLKKV 174
Score = 72.0 bits (177), Expect = 1e-14
Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 20/152 (13%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ L + ++ L ++ N+ I++L + L+ L+L N++S L
Sbjct: 21 AVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDL 78
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
LE L + N L + L L+L +N+ + + +LKNL+I
Sbjct: 79 S-PLKDLTKLEELSVNRNRLKNLN----GIPSACLSRLFLDNNELRDTDS-LIHLKNLEI 132
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
+ + N+ + S+ + L L
Sbjct: 133 L-------SIRNNK-----LKSIVMLGFLSKL 152
Score = 69.7 bits (171), Expect = 8e-14
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
+ + LSHN++ ++ P L +L LE L++ N+++ L + L L L N L
Sbjct: 65 LKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT 121
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
LE+L + N L L L L L N+ + LK +
Sbjct: 122 D-SLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG-GLTRLKKVNW 176
Query: 124 I 124
I
Sbjct: 177 I 177
Score = 67.0 bits (164), Expect = 6e-13
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS 61
++R+ L +N+L++ L +L NLEIL++ NN+++++ L L KL +L+L N ++
Sbjct: 106 ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT 163
Query: 62 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI---GNL 118
+ G + +DLT + + L + D + + P I G+
Sbjct: 164 NTG-GLTRLKKVNWIDLTGQKCVNEPVK-YQPELYITNTVKDPDGRW-ISPYYISNGGSY 220
Query: 119 KNLQII 124
+ ++
Sbjct: 221 VDGCVL 226
Score = 64.7 bits (158), Expect = 3e-12
Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 22/148 (14%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
+ ++ P L N L + L S L ++ N + + SL G
Sbjct: 4 QRPTPINQVFP-DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQ 60
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILET 127
F L+ L L++N +++ S L L L + N + L L L +
Sbjct: 61 FFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL---- 113
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNL 155
+ N + ++ L NL
Sbjct: 114 ------DNNE-----LRDTDSLIHLKNL 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 76.3 bits (187), Expect = 1e-15
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQ-IETLPT-SLSSLPKLRILNLGMNRLSS 62
+ + + + + L NL L + N Q ++ L L L +LR L + + L
Sbjct: 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
+ F P L L+L++N L +SL +L+ L L N
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLSGNPL 115
Score = 63.2 bits (153), Expect = 2e-11
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 4 ITRITLSHNK-LKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRL 60
+T + + + + L+ + L L L LT+ + + + + P+L LNL N L
Sbjct: 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92
Query: 61 SSLPRGFGAFPVLEVLDLTYNNLN 84
SL L+ L L+ N L+
Sbjct: 93 ESLSWKTVQGLSLQELVLSGNPLH 116
Score = 33.2 bits (75), Expect = 0.099
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 10/76 (13%)
Query: 207 MNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDF 264
L L L L + + L + + + F L L L N
Sbjct: 41 QQHLQHLELRDLRGLGEL------RNLTIVKSGL--RFVAPDAFHFTPRLSRLNLSFNAL 92
Query: 265 EVLPAEIGNLKNLQIM 280
E L + +LQ +
Sbjct: 93 ESLSWKTVQGLSLQEL 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 74.3 bits (183), Expect = 1e-15
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 5 TRITLSHN-KLKEIPPGL-ANLVNLEILTLFNNQ-IETLPTS-LSSLPKLRILNLGMNRL 60
+RI +S + L+++ NL + + + N + + + L LP L+ L + L
Sbjct: 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117
Query: 61 SSLP--RGFGAFPVLEVLDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDFEVLPAEIG 116
P + + +L++T N S+P N F + L L +N F +
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176
Query: 117 NLKNLQ 122
N L
Sbjct: 177 NGTKLD 182
Score = 74.3 bits (183), Expect = 1e-15
Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 11/131 (8%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTL-FNNQIETLPT-SLSSLPKLRILNLGMNR- 59
+ L L+ IP +NL N+ + + + ++ L + S +L K+ + + R
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 60 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN--FFMLETLRALYLGDNDF-EVLPAEI 115
L+ + P+L+ L + L + P + + L + DN + +P
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGL--KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 116 -GNLKNLQIIL 125
L N + L
Sbjct: 151 FQGLCNETLTL 161
Score = 72.0 bits (177), Expect = 1e-14
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 5 TRITLSHNK-LKEIPPG-LANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMN-R 59
T I + + + L I P L L L+ L +FN ++ P T + S IL + N
Sbjct: 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142
Query: 60 LSSLPRGFGAF----PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
++S+P AF L L N S+ G F L A+YL N
Sbjct: 143 MTSIPV--NAFQGLCNETLTLKLYNNGF--TSVQGYAFNGTKLDAVYLNKN 189
Score = 69.3 bits (170), Expect = 7e-14
Identities = 39/286 (13%), Positives = 87/286 (30%), Gaps = 77/286 (26%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN-RLSS 62
++ ++ IP + + L L + T+P+ + S+LP + + + ++ L
Sbjct: 14 EDFRVTCKDIQRIPSLPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE--IGNL 118
L F + +++ N + + L L+ L + + ++ P + +
Sbjct: 71 LESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129
Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
I+ ++ + ++ I A GL N L+
Sbjct: 130 DIFFIL------EITDNP--YMTSIPVNA-FQGLCNET-----------------LTLK- 162
Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI--LDLTY 236
L N +S+ AF+ T + + L
Sbjct: 163 --------------------LYNN------GFTSVQGY--------AFNGTKLDAVYLNK 188
Query: 237 NNLNEQSLPGNFF--MLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
N + + F + L + LP++ +LK L
Sbjct: 189 NK-YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233
Score = 58.9 bits (143), Expect = 3e-10
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 9 LSHNKLKEIPPG-LANLVN-LEILTLFNNQIETLPTSLSSLPKLRILNLGMNR-LSSLPR 65
+ + IP L N L L+NN ++ + KL + L N+ L+ + +
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197
Query: 66 G-F-GAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRAL 101
F G + +LD++ ++ +LP L+ L A
Sbjct: 198 DAFGGVYSGPSLLDVSQTSV--TALPSKGLEHLKELIAR 234
Score = 48.8 bits (117), Expect = 7e-07
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTL-FNNQIETLPT-SLSSLP-KLRILNLGMNRLSSLPR 65
L +N + N L+ + L N + + + + +L++ +++LP
Sbjct: 163 LYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP- 221
Query: 66 GFGAFPVLEVLDLTYN 81
L+ L
Sbjct: 222 -SKGLEHLKELIARNT 236
Score = 40.8 bits (96), Expect = 3e-04
Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 72/239 (30%)
Query: 45 SSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYL 103
R+ + R+ SLP + L L +L +++P + F L + +Y+
Sbjct: 11 HQEEDFRVTCKDIQRIPSLPPS------TQTLKLIETHL--RTIPSHAFSNLPNISRIYV 62
Query: 104 GDND-FEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161
+ + L + NL + I + R ++ I A + LP L
Sbjct: 63 SIDVTLQQLESHSFYNLSKVTHI-------EIRNTR-NLTYIDPDA-LKELPLL------ 107
Query: 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFP 221
+ L I L P
Sbjct: 108 ------------KFLG---------------------------IFNTGLKMFP----DLT 124
Query: 222 VLEAFSFTTILDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+ + IL++T N S+P N F + L L +N F + N L
Sbjct: 125 KVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLD 182
Score = 28.4 bits (64), Expect = 2.7
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFN 34
+ + +S + +P L +L L +
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
Score = 28.0 bits (63), Expect = 4.6
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 208 NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGN--FFMLETLRALYLGDNDF 264
L+ + P+L L + L + P + + L + DN +
Sbjct: 91 RNLTYIDPDALKELPLL------KFLGIFNTGL--KMFPDLTKVYSTDIFFILEITDNPY 142
Query: 265 -EVLPAEI-GNLKNLQIML 281
+P L N + L
Sbjct: 143 MTSIPVNAFQGLCNETLTL 161
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 74.3 bits (183), Expect = 2e-15
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
+ L++N+L +P G+ +L L+ L L NQ+++LP+ + L KL+ L L N+L S
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
+P G F L+ L L+ N L QS+P G F L L+ + L N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL--QSVPHGAFDRLGKLQTITLFGN 189
Score = 72.0 bits (177), Expect = 9e-15
Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
++ L L + L L L L NQ++TL + L +L L L N+L+S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI----G 116
LP G F L+ L L N L +SLP G F L L+ L L N + +PA
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQL--KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 117 NLKNLQ 122
NL+ L
Sbjct: 156 NLQTLS 161
Score = 67.8 bits (166), Expect = 3e-13
Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 13 KLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-FGAF 70
L +P G+ + E L L + + TL + L KL LNL N+L +L G F
Sbjct: 25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82
Query: 71 PVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQ 122
L L L N L SLP G F L L LYLG N + LP+ + LK L+
Sbjct: 83 TELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Score = 42.0 bits (99), Expect = 1e-04
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 4 ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMN 58
+ + L+ N+L+ IP G L NL+ L+L NQ++++P + L KL+ + L N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 42.0 bits (99), Expect = 1e-04
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L +L G F L L L N L SLP G F L L LYLG N +
Sbjct: 69 NQLQTLSAG--VFDDLTE---LGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 267 LPA----EIGNLKNLQ 278
LP+ + LK L+
Sbjct: 122 LPSGVFDRLTKLKELR 137
Score = 39.3 bits (92), Expect = 0.001
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 206 KMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 264
+ L++L F L T L+L YN L Q+L G F L L L L +N
Sbjct: 43 QSTGLATLSDA--TFRGLTKL---TWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL 95
Query: 265 EVLPAEI-GNLKNLQI 279
LP + +L L
Sbjct: 96 ASLPLGVFDHLTQLDK 111
Score = 38.5 bits (90), Expect = 0.002
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L+SLP G F L L L N L +SLP G F L L+ L L N +
Sbjct: 93 NQLASLPLG--VFDHLTQ---LDKLYLGGNQL--KSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 267 LPAEI----GNLKNLQ 278
+PA NL+ L
Sbjct: 146 IPAGAFDKLTNLQTLS 161
Score = 35.8 bits (83), Expect = 0.013
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 229 TTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
T LDL L S F L L L L N + L A + +L L
Sbjct: 37 TEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Score = 30.0 bits (68), Expect = 0.85
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQ 36
+ ++LS N+L+ +P G L L+ +TLF NQ
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 75.2 bits (185), Expect = 2e-15
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNL-GMNR 59
+ KL+ I G + +LE + + N + + S+LPKL + + N
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 60 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
L + F P L+ L ++ + + LP + L + DN
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDN 138
Score = 73.3 bits (180), Expect = 9e-15
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 14/130 (10%)
Query: 5 TRITLSH-NKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMN-RL 60
I + N L I P NL NL+ L + N I+ LP + +L++ N +
Sbjct: 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 141
Query: 61 SSLPRGFGAF----PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL-GDNDFEVLPAEI 115
++ R +F +L L N + Q + + F L L L +N+ E LP ++
Sbjct: 142 HTIER--NSFVGLSFESVILWLNKNGI--QEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197
Query: 116 -GNLKNLQII 124
I+
Sbjct: 198 FHGASGPVIL 207
Score = 71.8 bits (176), Expect = 4e-14
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLF-NNQIETLPT-SLSSLP-KLRILNLGMNRL 60
+ +S+ +K +P + + +L + N I T+ S L + IL L N +
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166
Query: 61 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GN 117
+ F + E+ NNL + LP + F L + LP+ N
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Query: 118 LKNLQI 123
LK L+
Sbjct: 225 LKKLRA 230
Score = 69.1 bits (169), Expect = 3e-13
Identities = 47/285 (16%), Positives = 82/285 (28%), Gaps = 62/285 (21%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNR-LSSLP 64
+K+ EIP L N L ++ + + S L + + N L +
Sbjct: 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71
Query: 65 RG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNL 121
F P L + + N N + F L L+ L + + + LP +
Sbjct: 72 ADVFSNLPKLHEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130
Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DA 180
++ D+ + I + L+ E
Sbjct: 131 VLL------DIQDNIN-----------IHTIER------------NSFVGLSFESVILWL 161
Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIK------MNRLSSLPRGFGAFPVLEAFSFTTILDL 234
+ I+ + ++ N L LP F S ILD+
Sbjct: 162 NKNGIQ-------EIHNSAFNGTQLDELNLSDNNNLEELPN--DVFHGA---SGPVILDI 209
Query: 235 TYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQ 278
+ + SLP L+ LRA + + LP + L L
Sbjct: 210 SRTRI--HSLPSYGLENLKKLRARST--YNLKKLPT-LEKLVALM 249
Score = 63.7 bits (155), Expect = 2e-11
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 9 LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG 66
+N L+E+P IL + +I +LP+ L +L KLR + L LP
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT- 241
Query: 67 FGAFPVLEVLDLTYN 81
L LTY
Sbjct: 242 LEKLVALMEASLTYP 256
Score = 61.4 bits (149), Expect = 1e-10
Identities = 50/262 (19%), Positives = 87/262 (33%), Gaps = 49/262 (18%)
Query: 26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLN 84
+ + +++ +P+ L L + +L + +G F F LE ++++ N++
Sbjct: 10 SNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 85 EQSLPGNFFMLETLRALYL-GDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVG 142
E F L L + + N+ + E NL NLQ +L +
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL-------ISNT------ 114
Query: 143 ISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKN 202
GI LP++ + +L + L + N I F GL
Sbjct: 115 -----GIKHLPDVH-----------KIHSLQKVLLDIQDNINIHTIERNSF---VGLSFE 155
Query: 203 PKI---KMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALY 258
I N + + AF + NNL + LP + F L
Sbjct: 156 SVILWLNKNGIQEIHN--SAFNGT---QLDELNLSDNNNL--EELPNDVFHGASGPVILD 208
Query: 259 LGDNDFEVLPAEI-GNLKNLQI 279
+ LP+ NLK L+
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRA 230
Score = 41.4 bits (97), Expect = 3e-04
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 4 ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNL 55
+ +S ++ +P L NL L ++ LP +L L L +L
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLP-TLEKLVALMEASL 253
Score = 41.0 bits (96), Expect = 4e-04
Identities = 37/236 (15%), Positives = 66/236 (27%), Gaps = 69/236 (29%)
Query: 51 RILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF- 108
R+ ++++ +P L L + + F L + + ND
Sbjct: 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 109 EVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
EV+ A++ NL L I + + N ++ I+ A LPNL
Sbjct: 68 EVIEADVFSNLPKLHEI------RIEKANN--LLYINPEA-FQNLPNL------------ 106
Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFS 227
+ L I + LP
Sbjct: 107 ------QYLL---------------------------ISNTGIKHLPDV--HKIHSLQ-- 129
Query: 228 FTTILDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDFEVLPAEIGNLKNLQIML 281
+LD+ N N ++ N F + L+L N + + N L +
Sbjct: 130 -KVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 72.3 bits (178), Expect = 2e-15
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 5 TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
TR+ L NKL+ +P G+ L L L+L NQI++LP + L KL IL L N+L S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
LP G F L+ L L N L +S+P G F L +L+ ++L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTN 134
Score = 64.6 bits (158), Expect = 1e-12
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 13 KLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSLPRG-FGAF 70
L +P G+ + L L +N++++LP + L +L L+L N++ SLP G F
Sbjct: 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 71 PVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQII 124
L +L L N L QSLP G F L L+ L L N + +P I L +LQ I
Sbjct: 76 TKLTILYLHENKL--QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Score = 36.1 bits (84), Expect = 0.007
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L SLP G F L T L L+ N + QSLP G F L L LYL +N +
Sbjct: 38 NKLQSLPHG--VFDKLTQL---TKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 267 LPAEI-GNLKNLQ 278
LP + L L+
Sbjct: 91 LPNGVFDKLTQLK 103
Score = 36.1 bits (84), Expect = 0.007
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 229 TTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA 269
T L+L N L QSLP G F L L L L N + LP
Sbjct: 30 ATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Score = 31.5 bits (72), Expect = 0.25
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQ 36
+ L N+LK +P G L +L+ + L N
Sbjct: 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 73.9 bits (182), Expect = 3e-15
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
I +I +++ +K + G+ L N+ L L N++ + +L L L L L N+L SL
Sbjct: 43 IDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSL 100
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI----GN 117
P G F L+ L L N L QSLP G F L L L L N + LP + N
Sbjct: 101 PNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 118 LKNL 121
L L
Sbjct: 159 LTEL 162
Score = 70.4 bits (173), Expect = 5e-14
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 5 TRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
+ L N+L+ +P G+ + L NL L L +NQ+++LP + L L L+L N+L S
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
LP G F L+ L L N L +S+P G F L +L+ ++L DN
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQL--KSVPDGVFDRLTSLQYIWLHDN 215
Score = 68.9 bits (169), Expect = 1e-13
Identities = 47/124 (37%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL 63
+ L NKL +I L L NL L L NQ+++LP L L+ L L N+L SL
Sbjct: 66 RYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI----GN 117
P G F L L+L +N L QSLP G F L L L L N + LP +
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQL--QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 118 LKNL 121
LK+L
Sbjct: 183 LKDL 186
Score = 65.0 bits (159), Expect = 3e-12
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
+ L + + L +++ + N+ I+++ + LP +R L LG N+L +
Sbjct: 22 IKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS 79
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQ 122
L L LT N L QSLP G F L L+ L L +N + LP + + L NL
Sbjct: 80 -ALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 123 I 123
Sbjct: 137 Y 137
Score = 42.7 bits (101), Expect = 9e-05
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L SLP G F L L L N L QSLP G F L L L L N +
Sbjct: 95 NQLQSLP--NGVFDKLTN---LKELVLVENQL--QSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 267 LPAEI----GNLKNL 277
LP + NL L
Sbjct: 148 LPKGVFDKLTNLTEL 162
Score = 39.6 bits (93), Expect = 0.001
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 4 ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPT----SLSSLPKLRILN 54
+T + LS+N+L+ +P G+ L L+ L L+ NQ++++P L+SL + + +
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214
Score = 37.7 bits (88), Expect = 0.004
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L SLP G V + + T L+L +N L QSLP G F L L L L N +
Sbjct: 119 NQLQSLPDG-----VFDKLTNLTYLNLAHNQL--QSLPKGVFDKLTNLTELDLSYNQLQS 171
Query: 267 LPAEI----GNLKNL 277
LP + LK+L
Sbjct: 172 LPEGVFDKLTQLKDL 186
Score = 36.1 bits (84), Expect = 0.012
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 43 SLSSLP-----KLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLET 97
P + NL ++ ++ + +++ +S+ G L
Sbjct: 9 IKQIFPDDAFAETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDI--KSVQG-IQYLPN 64
Query: 98 LRALYLGDNDFEVLPA 113
+R L LG N + A
Sbjct: 65 VRYLALGGNKLHDISA 80
Score = 35.8 bits (83), Expect = 0.015
Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 12/94 (12%)
Query: 186 KFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP 245
T + + + S+ L L L N L +
Sbjct: 30 SVTDAVTQNELNSI-DQIIANNSDIKSVQ----GIQYLPN---VRYLALGGNKL--HDI- 78
Query: 246 GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
L L L L N + LP + L NL+
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Score = 31.9 bits (73), Expect = 0.22
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQ 36
+ L N+LK +P G L +L+ + L +N
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Score = 29.6 bits (67), Expect = 1.5
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
++ + + +++ +S+ G L +R L LG N +
Sbjct: 29 KSVTDAVTQNE-------LNSIDQIIANNSDI--KSVQG-IQYLPNVRYLALGGNKLHDI 78
Query: 268 PA 269
A
Sbjct: 79 SA 80
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 73.4 bits (181), Expect = 3e-15
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
P M+ RGHI+ ISS+AG + + Y ASK+ + GLM + AEELR ++ +
Sbjct: 150 APAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELR--QHQ--VRVS 205
Query: 189 SIFPFMVDT 197
+ P V T
Sbjct: 206 LVAPGSVRT 214
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 74.2 bits (182), Expect = 4e-15
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 4 ITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPTSLSS-----LPKLRILNLGM 57
+ ++++ + L L L +N +S+ P L++L L
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210
Query: 58 NRLSSLP----RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 113
+ + A L+ LDL++N+L + + + L +L L + +P
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270
Query: 114 EIG-NLKNL 121
+ L L
Sbjct: 271 GLPAKLSVL 279
Score = 65.3 bits (159), Expect = 3e-12
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 9 LSHNKLKEIPPG----LANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLSS 62
L + ++ A V L+ L L +N + S +L LNL L
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267
Query: 63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
+P+G L VLDL+YN L+ P L + L L N F
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLDRNPSPDE---LPQVGNLSLKGNPF 308
Score = 54.9 bits (132), Expect = 1e-08
Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 1 MLYITRITLSHNKL-KEIPPGLANLV--NLEILTLFNNQIETLPTSLSSL-----PKLRI 52
+ + +TL + ++ PP L +L IL L N T L+ L P L++
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 53 LNLGMNRLSSLP-RGFGAFPVLEVLDLTYNNL-NEQSLPGNFF--MLETLRALYLGDNDF 108
L++ + FP L LDL+ N E+ L TL+ L L +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 109 EVLPAEI----GNLKNLQI 123
E LQ
Sbjct: 214 ETPSGVCSALAAARVQLQG 232
Score = 43.3 bits (102), Expect = 6e-05
Identities = 34/268 (12%), Positives = 68/268 (25%), Gaps = 38/268 (14%)
Query: 21 LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPV------LE 74
+LE L + L + L + L + R L+
Sbjct: 39 YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98
Query: 75 VLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMM 133
L L + + P L L L + + A + L+ L +
Sbjct: 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL--SI 156
Query: 134 EKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF 193
+ + P L L D ++
Sbjct: 157 AQAHSLNFSCEQVRV---FPAL------------------STL--DLSDNPELGERGLIS 193
Query: 194 MVDTGLCKNPK---IKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM 250
+ + ++ + + A + A LDL++N+L + + +
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSA--LAAARVQLQGLDLSHNSLRDAAGAPSCDW 251
Query: 251 LETLRALYLGDNDFEVLPAEIG-NLKNL 277
L +L L + +P + L L
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVL 279
Score = 42.6 bits (100), Expect = 1e-04
Identities = 48/272 (17%), Positives = 85/272 (31%), Gaps = 49/272 (18%)
Query: 18 PPGLANLVNLEILTLFNNQI--ETLPT-----SLSSLPKLRILNLGMNRLSSLPRGFGAF 70
+ ++L+ LT+ +I L +S L +L + NL + + P
Sbjct: 61 FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120
Query: 71 PVLEVLDLTYNNLNEQSL---PGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILE 126
P L +L+L + + ++ L+ L + E + L +
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL-- 178
Query: 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLV------PYCASKFAVRGLMEALAEELRE-D 179
D+ + G+ S + P L + V + A +L+ D
Sbjct: 179 ----DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234
Query: 180 -ARNSKIKFTSIFPFMVDTGLCKNPK------IKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
+ NS C P + L +P+G L +L
Sbjct: 235 LSHNS-------LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLS------VL 279
Query: 233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 264
DL+YN L+ P L + L L N F
Sbjct: 280 DLSYNRLDRNPSPDE---LPQVGNLSLKGNPF 308
Score = 32.6 bits (74), Expect = 0.17
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL-NE 241
+ + + ++ + P +K+ ++ + + F + LDL+ N E
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188
Query: 242 QSLPGNFF--MLETLRALYLGDNDFEVLPAEIGNLKNLQIMLE 282
+ L TL+ L L + E L ++ L+
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231
Score = 29.9 bits (67), Expect = 1.3
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 220 FPVLEAFSFTTILDLTYNNLNEQSLPGNF-----FMLETLRALYLGDNDFEVLPAE-IGN 273
P L + + L N++ + ++ L+ L + E +
Sbjct: 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171
Query: 274 LKNLQIM 280
L +
Sbjct: 172 FPALSTL 178
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 73.1 bits (180), Expect = 4e-15
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
LP ++K G++V +SS A + + Y +SK A+ LA E R ++K
Sbjct: 122 LP-ELKKTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANEER------QVKAI 174
Query: 189 SIFPFMVDT 197
++ P +VDT
Sbjct: 175 AVAPGIVDT 183
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 71.6 bits (176), Expect = 6e-15
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 5 TRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
T++ L NKL+ +P G+ N L +L L L NQ+++LP + L +L+ L L N+L S
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 63 LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
LP G F L+ L L N L +S+P G F L +L+ ++L DN
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQL--KSVPDGVFDRLTSLQYIWLHDN 158
Score = 58.9 bits (143), Expect = 2e-10
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-F 67
+P G+ L L N +++LP L L L LG N+L SLP G F
Sbjct: 15 YSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72
Query: 68 GAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA----EIGNLKNL 121
L L+L+ N L QSLP G F L L+ L L N + LP ++ LK+L
Sbjct: 73 NKLTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129
Score = 40.4 bits (95), Expect = 3e-04
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 4 ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPT----SLSSLPKLRILN 54
+ + L+ N+L+ +P G+ L L+ L L+ NQ++++P L+SL + + +
Sbjct: 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
Score = 38.5 bits (90), Expect = 0.001
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 201 KNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYL 259
++ N L SLP G F L + T L L N L QSLP G F L +L L L
Sbjct: 31 TYLDLETNSLKSLP--NGVFDELTSL---TQLYLGGNKL--QSLPNGVFNKLTSLTYLNL 83
Query: 260 GDNDFEVLPAEI----GNLKNLQ 278
N + LP + LK L
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELA 106
Score = 36.6 bits (85), Expect = 0.006
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N+L SLP G V + T L+L+ N L QSLP G F L L+ L L N +
Sbjct: 62 NKLQSLPNG-----VFNKLTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 267 LPA----EIGNLKNL 277
LP ++ LK+L
Sbjct: 115 LPDGVFDKLTQLKDL 129
Score = 32.0 bits (73), Expect = 0.19
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQ 36
+ L N+LK +P G L +L+ + L +N
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 71.2 bits (175), Expect = 7e-15
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 5 TRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLS 61
T + L+ N+L I L +L L L NQ+ + + ++ L LG N++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 62 SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
+ F L+ L+L N + + G+F L +L +L L N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQI--SCVMPGSFEHLNSLTSLNLASN 136
Score = 46.9 bits (112), Expect = 2e-06
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 4 ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN 58
I + L NK+KEI + L L+ L L++NQI + S L L LNL N
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 46.5 bits (111), Expect = 3e-06
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 32/115 (27%)
Query: 13 KLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLSSLPRGFGAF 70
LKEIP + ++ L L +N++ + + LP L L L N+L+ +
Sbjct: 19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE------ 70
Query: 71 PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI----GNLKNL 121
P F ++ L LG+N + + ++ LK L
Sbjct: 71 ------------------PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107
Score = 36.5 bits (85), Expect = 0.006
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 209 RLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 268
L +PR P TT L L N L S G F L L L L N +
Sbjct: 19 GLKEIPRDI---P-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70
Query: 269 AEI-GNLKNLQ 278
++Q
Sbjct: 71 PNAFEGASHIQ 81
Score = 35.0 bits (81), Expect = 0.019
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
N L + G F L L+L N L + F ++ L LG+N +
Sbjct: 39 NELGRISSD-GLFGRLPHL---VKLELKRNQL--TGIEPNAFEGASHIQELQLGENKIKE 92
Query: 267 LPAEI----GNLKNL 277
+ ++ LK L
Sbjct: 93 ISNKMFLGLHQLKTL 107
Score = 34.6 bits (80), Expect = 0.026
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 59 RLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
L +PR P+ L L N L S G F L L L L N +
Sbjct: 19 GLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75
Query: 117 NLKNLQ 122
++Q
Sbjct: 76 GASHIQ 81
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 72.6 bits (179), Expect = 7e-15
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
P ++E R G I+ ISS AG+ P ++ Y ASK AV GL A A EL ++S I+
Sbjct: 144 APRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAEL---GKHS-IRV 199
Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
S+ P V+T + + ++ + P L +
Sbjct: 200 NSVHPGPVNTPMGSGDMVT-----AVGQAMETNPQLSHVLTPFLP 239
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 71.9 bits (177), Expect = 1e-14
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
M+ +G I + A + G + ++KF +R + +++A EL +N +
Sbjct: 126 ARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELM--PKNIHVA-H 182
Query: 189 SIFPFMVDTGLCKN--PKIKMNRLSSLPRGFG 218
I VDT + ++ + P
Sbjct: 183 LIIDSGVDTAWVRERREQMFGKDALANPDLLM 214
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 72.5 bits (178), Expect = 2e-14
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGL-PNLVPYCASKFAVRGLMEALAEELR 177
LP M + G ++ ISS + G P L PY A+K A+ + A EL
Sbjct: 130 LPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELS 179
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 71.9 bits (177), Expect = 2e-14
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
+P +M R G IV SS+ G+ G N+ Y ASK + GLM +A EL + I+
Sbjct: 161 IPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALEL---GPRN-IRV 216
Query: 188 TSIFPFMVDTGLCKNP 203
+ P V T + N
Sbjct: 217 NIVCPSSVATPMLLNE 232
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 71.5 bits (176), Expect = 2e-14
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
+P M+ R G I+ SS+ G+ P+ Y A+K V GLM A EL ++ I+
Sbjct: 148 VPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVEL---GQHM-IRV 203
Query: 188 TSIFPFMVDTGLCKNP 203
S+ P V T + N
Sbjct: 204 NSVHPTHVKTPMLHNE 219
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 70.6 bits (174), Expect = 3e-14
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
+ M E RG I+ ISS+ G+ G Y A+KFAVRGL ++ A EL I+
Sbjct: 124 VKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPS----GIRVN 179
Query: 189 SIFPFMVDTGLCKN-----PKIKMNRL 210
SI P +V T + + + R
Sbjct: 180 SIHPGLVKTPMTDWVPEDIFQTALGRA 206
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 71.0 bits (175), Expect = 3e-14
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
+P M+E G IV +SS AG+ P Y ASK + L LA EL I+
Sbjct: 148 VPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIEL---GEYG-IRV 203
Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEA 225
SI P+ V+T + + + M + P +FP +
Sbjct: 204 NSIHPYSVETPMIEPEAM-MEIFARHPSFVHSFPPMPV 240
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 70.2 bits (173), Expect = 4e-14
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
+P M + G IV ISS AG++GL Y ASK+ VRGL + A EL D +I+
Sbjct: 122 IPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTD----RIRVN 177
Query: 189 SIFPFMVDTGLCKN--PKIKMNRLSSLPRG-FGAFP 221
S+ P M T + + + P G G P
Sbjct: 178 SVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEP 213
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 70.2 bits (173), Expect = 4e-14
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 133 MEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFP 192
M++ G I+ ++S++ + + Y ASK AV L A A R+ I+ SI P
Sbjct: 126 MKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQ--GYAIRVNSIHP 183
Query: 193 FMVDTGL 199
+ T +
Sbjct: 184 DGIYTPM 190
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 70.1 bits (172), Expect = 5e-14
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 117 NLKNLQIILETFLPDMMEKN--RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAE 174
NL ++ + L + +V ISS+ + YCA K A L + LA
Sbjct: 126 NLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAA 185
Query: 175 ELREDARNSKIKFTSIFPFMVDTGL 199
E ++ S P +D +
Sbjct: 186 E------EPSVRVLSYAPGPLDNDM 204
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 69.5 bits (171), Expect = 8e-14
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
+P M+ G I+ I+S+ N Y SK A+ GL ++A + A I+
Sbjct: 124 IPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDY---APK--IRCN 178
Query: 189 SIFPFMVDTGL 199
++ P + T +
Sbjct: 179 AVCPGTIMTPM 189
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 68.7 bits (169), Expect = 1e-13
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
+ K++G+++ ISS+ G +G VPY A+K AV + +ALA + ++ I
Sbjct: 128 YLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPY----GVRVNCIS 183
Query: 192 PFMVDTGL 199
P + T L
Sbjct: 184 PGNIWTPL 191
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 68.5 bits (168), Expect = 2e-13
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
+ G V + A + ++ Y A+K A +++ LA E I
Sbjct: 132 KLLNQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAG--STSLGIL 189
Query: 192 PFMVDTGLCKN--PKIKMNRLSSLPR 215
P +DT + + + L
Sbjct: 190 PVTLDTPTNRKYMSDANFDDWTPLSE 215
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 68.3 bits (168), Expect = 2e-13
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
P M+E+ G IV +SS+AG V + Y SK + L A ELR I+
Sbjct: 146 APRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSS----GIRSN 201
Query: 189 SIFPFMVDTGL 199
++ P VDT +
Sbjct: 202 TLLPAFVDTPM 212
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 65.9 bits (161), Expect = 2e-13
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
S + ++ LE L+ N + ++ +L L KL+ L L NR+S
Sbjct: 26 NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84
Query: 69 -AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
P L L+L+ N + + S LE L++L L +
Sbjct: 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 50.8 bits (122), Expect = 4e-08
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 20 GLANLVNLEILTLFNNQ--IETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLD 77
+++ L L N++ L +L L+ L+S+ L+ L+
Sbjct: 12 RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLE 70
Query: 78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
L+ N + L L L L N + L + I LK L+
Sbjct: 71 LSDNRV-SGGLEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLE 113
Score = 48.1 bits (115), Expect = 4e-07
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 4 ITRITLSHNKLKEIPPGLA-NLVNLEILTLFNNQIETLPT--SLSSLPKLRILNLGMNRL 60
+ ++ LS N++ LA NL L L N+I+ L T L L L+ L+L +
Sbjct: 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
Query: 61 SSLP--RG--FGAFPVLEVLD 77
++L R F P L LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146
Score = 27.7 bits (62), Expect = 3.6
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN 262
NR+S E T L+L+ N + + S LE L++L L +
Sbjct: 74 NRVSGGLEVLA-----EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 67.5 bits (166), Expect = 3e-13
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
LP +++ + G +V SS G G N Y ASKFA G+M+ LA+E + +++
Sbjct: 136 LPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQ-----QRLRVN 190
Query: 189 SIFPFMVDTGLCKN--PKIKMNRL 210
I P T + + P +L
Sbjct: 191 CINPGGTRTAMRASAFPTEDPQKL 214
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 65.9 bits (161), Expect = 3e-13
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
+ +I A VNLE L+L N + ++ ++L LPKL+ L L NR+
Sbjct: 33 NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91
Query: 69 -AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
P L L+L+ N L + S LE L++L L +
Sbjct: 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
Score = 52.8 bits (127), Expect = 1e-08
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR 65
RI L P + LV L + + + L L+L L S+
Sbjct: 13 RIHLELRNRT--PAAVRELV----LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS- 65
Query: 66 GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
P L+ L+L+ N + L L L L L N + + + + LK L+
Sbjct: 66 NLPKLPKLKKLELSENRI-FGGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLE 120
Score = 52.4 bits (126), Expect = 2e-08
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 1 MLYITRITLSHNKLKEIPPGLA-NLVNLEILTLFNNQIETLPT--SLSSLPKLRILNLGM 57
+ + ++ LS N++ LA L NL L L N+++ + T L L L+ L+L
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
Query: 58 NRLSSLP--RG--FGAFPVLEVLDLTYNNLNE 85
+++L R F P L LD E
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 67.5 bits (166), Expect = 4e-13
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+ + R G I+ ++S AG G + YCA+K AV L ++ +L
Sbjct: 125 ARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDL 173
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 67.6 bits (166), Expect = 4e-13
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
+P M+ IV ISS+ + N Y SK AV GL +++A + A ++
Sbjct: 117 IPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDY---APL--LRCN 171
Query: 189 SIFPFMVDTGL 199
++ P +DT L
Sbjct: 172 AVCPATIDTPL 182
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 67.6 bits (166), Expect = 4e-13
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNL-VPYCASKFAVRGLMEALAEELREDARNSKIKF 187
M+ +G IV +S++ + Y A+K AV GL +L EL E I+
Sbjct: 137 ARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEY----GIRV 192
Query: 188 TSIFPFMVDTGL 199
+ P++V + L
Sbjct: 193 NCVSPYIVASPL 204
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 67.2 bits (165), Expect = 4e-13
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 132 MMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
E G I+ +S+A I G P L Y +KFAVRGL +A A+EL
Sbjct: 127 FDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQEL 172
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 67.5 bits (166), Expect = 5e-13
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
P M+++N G IV +SSM G Y +SK+ V GL + A +L
Sbjct: 142 APGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDL 189
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 67.0 bits (164), Expect = 5e-13
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
++ I + K G + + A + G P ++ Y +K AV L ++LA +
Sbjct: 108 SIWTSTISSHLATKHL--KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKN 165
Query: 177 REDARNSKIKFTSIFPFMVDT 197
++ P +DT
Sbjct: 166 SGMPSG--AAAIAVLPVTLDT 184
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 65.4 bits (160), Expect = 5e-13
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG 66
+ L K+ I A L + + +N+I L L +L+ L + NR+ + G
Sbjct: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEG 82
Query: 67 FG-AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
A P L L LT N+L E L++L L + N
Sbjct: 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
Score = 62.8 bits (153), Expect = 5e-12
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 6/115 (5%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
L+ +++ N V L L +I + ++L + ++ N + L GF
Sbjct: 4 LTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFP 61
Query: 69 AFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
L+ L + N + + L L L L +N L ++ L +L+
Sbjct: 62 LLRRLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLK 113
Score = 49.3 bits (118), Expect = 2e-07
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 9 LSHNKLKEIPPGLA-NLVNLEILTLFNNQIETLPT--SLSSLPKLRILNLGMNRLSSLP- 64
+++N++ I GL L +L L L NN + L L+SL L L + N +++
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130
Query: 65 -RGF--GAFPVLEVLDLTYNNLNE 85
R + P + VLD L E
Sbjct: 131 YRLYVIYKVPQVRVLDFQKVKLKE 154
Score = 32.7 bits (75), Expect = 0.086
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 4 ITRITLSHNK---LKEIPPGLANLVNLEILTLFNNQIETLP----TSLSSLPKLRILN 54
+T + L++N L ++ P LA+L +L L + N + + +P++R+L+
Sbjct: 90 LTELILTNNSLVELGDLDP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 66.8 bits (164), Expect = 6e-13
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ ++ G I+ S AG VG P L Y +SKFAVRGL + A +L
Sbjct: 122 VEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDL 170
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 66.7 bits (164), Expect = 6e-13
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 129 LPDMMEKNRGH-IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
+ M K G I+ +SS+ G VG P+L Y ASK AVR + ++ A + + ++
Sbjct: 125 IQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYD--VRV 182
Query: 188 TSIFPFMVDTGL 199
++ P + T L
Sbjct: 183 NTVHPGYIKTPL 194
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 66.9 bits (164), Expect = 6e-13
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 129 LPDMMEKNRGH---IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
L ++ G I I S+ G + + Y ASK AV +LA+ + +
Sbjct: 119 LDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLA----PITGV 174
Query: 186 KFTSIFPFMVDTGL 199
SI P + T L
Sbjct: 175 TAYSINPGITRTPL 188
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 67.2 bits (165), Expect = 7e-13
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+M+ G VGISS+A Y +K AV LM+ A+EL
Sbjct: 135 AREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADEL 182
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 66.7 bits (164), Expect = 7e-13
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
LP M+ + G IV I+S+A +V P Y SK AV L +++A + A S I+
Sbjct: 126 LPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDY---AG-SGIRCN 181
Query: 189 SIFPFMVDT----GLCKNPKIKMNRLSSLPRG 216
++ P M++T P+++ L+ +P+
Sbjct: 182 AVCPGMIETPMTQWRLDQPELRDQVLARIPQK 213
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 66.8 bits (164), Expect = 8e-13
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+P M G IV ++S G+ P YC +K A+ L + + +
Sbjct: 136 AIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDH 184
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 67.3 bits (165), Expect = 9e-13
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
LP M+E+ + G ++ +SS G+ G P Y ASK V+GLM +LA E+
Sbjct: 178 LPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEV 226
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 66.4 bits (163), Expect = 1e-12
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
+P M G I+ +S + + Y ASK A+ L A+A + A+ I+
Sbjct: 144 IPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDH---AK-EGIRVN 199
Query: 189 SIFPFMVDTGL 199
++ P +D+
Sbjct: 200 AVAPGTIDSPY 210
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 66.0 bits (162), Expect = 1e-12
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
FLP + + IV ++S+ P++V A++ V+ L+ ++A E
Sbjct: 129 FLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEF 177
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 66.0 bits (162), Expect = 1e-12
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 128 FLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
++ + G IV +SS + N YC++K A+ L + +A EL
Sbjct: 118 VARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALEL 167
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 66.1 bits (162), Expect = 1e-12
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+ +N G IV +SMAG+ G PN+ Y SK A+ L E A +L
Sbjct: 128 SRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDL 175
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 66.0 bits (162), Expect = 1e-12
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 128 FLPDMME-KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
DM+ G IV +SSM V PNL+ Y ++K A+ L +A+A EL
Sbjct: 118 VARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMEL 167
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 65.6 bits (161), Expect = 2e-12
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
L M E+ G +V +S+ GI G+ N Y A+K V GL A E I+
Sbjct: 136 LKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRY----GIRIN 191
Query: 189 SIFPFMVDTGL 199
+I P + T +
Sbjct: 192 AIAPGAIWTPM 202
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 65.2 bits (160), Expect = 2e-12
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
LP + I SS G G N Y SKFA GLM+ LA+EL E ++
Sbjct: 138 LPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADEL-EGVTA--VRAN 194
Query: 189 SIFPFMVDT 197
SI P T
Sbjct: 195 SINPGATRT 203
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 65.7 bits (161), Expect = 2e-12
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
+ +RG +V S AG Y A+K AV GL+ +A EL ++ +
Sbjct: 129 ALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELA-----PHVRVNGVA 183
Query: 192 PFMVDTGL 199
P ++T L
Sbjct: 184 PGGMNTDL 191
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 65.3 bits (160), Expect = 3e-12
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 128 FLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+ G I+ ++S A + LP+ YC SK + + LA EL
Sbjct: 140 VGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLAREL 189
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 64.9 bits (159), Expect = 3e-12
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 128 FLPDMMEKNRGH----IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
+P E I+ ++S PNL Y A+K V + +ALA EL A
Sbjct: 126 LIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIEL---APA- 181
Query: 184 KIKFTSIFPFMVDTGL 199
KI+ ++ P +T L
Sbjct: 182 KIRVVALNPVAGETPL 197
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 65.3 bits (160), Expect = 3e-12
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 129 LPDMMEKNR--GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK 186
M + G I+ S++ P PY A+K A+ GL ++ + + R + I
Sbjct: 146 FRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGR--VHD--IA 201
Query: 187 FTSIFPFMVDTGL 199
I DT +
Sbjct: 202 CGQIDIGNADTPM 214
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 64.5 bits (158), Expect = 3e-12
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
++ K IV S + PN Y SK A+ + ++LA +L
Sbjct: 112 LENNL--KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDL 158
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 64.9 bits (159), Expect = 4e-12
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+P M + G I+ +S+ + L Y +K A+ + LA E+
Sbjct: 127 LVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEV 175
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 64.5 bits (158), Expect = 5e-12
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
P + G+++ +SS+AG LP++ Y ASK A+ + ++LA E
Sbjct: 141 AYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEW 189
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 64.1 bits (157), Expect = 5e-12
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ N G IV +S+A VG P L Y ASKFAV G +ALA E+
Sbjct: 129 CRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREM 177
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 64.0 bits (157), Expect = 6e-12
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+P+M ++ G ++ +SS+ PNL PY SK A+ GL + LA EL
Sbjct: 135 VPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVEL 182
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 64.1 bits (157), Expect = 6e-12
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+P ++ G IV ISS Y +K A+ L +A +
Sbjct: 130 IPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQY 177
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 63.7 bits (156), Expect = 7e-12
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
P+M + G I+ I+SMA N+ Y +SK A L+ +A +L
Sbjct: 129 VAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDL 177
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 63.3 bits (155), Expect = 1e-11
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
P + RG++V ISS++G + +P Y A+K A+ L LA E
Sbjct: 129 AHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEW 177
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 63.3 bits (155), Expect = 1e-11
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+M + G IV ++S+ G+ Y ASK + L +LA +L
Sbjct: 120 AREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDL 167
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 61.5 bits (150), Expect = 1e-11
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
T + + +L +P G+ + + L L NNQI L + L L+ L N+L+++
Sbjct: 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
P G F L LDL N+L +S+P G F L++L +YL +N
Sbjct: 73 PTGVFDKLTQLTQLDLNDNHL--KSIPRGAFDNLKSLTHIYLYNN 115
Score = 37.6 bits (88), Expect = 0.002
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
RL+S+P G P + L L N + L G F L L+ LY N
Sbjct: 22 IRLASVPAGI---P-----TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 267 LPAEI-GNLKNLQ 278
+P + L L
Sbjct: 72 IPTGVFDKLTQLT 84
Score = 37.2 bits (87), Expect = 0.002
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 58 NRLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI 115
RL+S+P G P + L L N + L G F L L+ LY N +P +
Sbjct: 22 IRLASVPAGI---PTDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV 76
Query: 116 -GNLKNLQ 122
L L
Sbjct: 77 FDKLTQLT 84
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 61.5 bits (150), Expect = 1e-11
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
T + S L +P G+ ++L L++NQI L + L +L L+L N+L+ L
Sbjct: 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 64 PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
P G F L L L N L +S+P G F L++L ++L +N
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQL--KSIPRGAFDNLKSLTHIWLLNN 112
Score = 36.8 bits (86), Expect = 0.004
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 15/76 (19%)
Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
L+S+P G P + T +L L N + L G F L L L L +N V
Sbjct: 19 KSLASVPTGI---P-----TTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 267 LPAEI----GNLKNLQ 278
LPA + L L
Sbjct: 69 LPAGVFDKLTQLTQLS 84
Score = 36.4 bits (85), Expect = 0.004
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 58 NRLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI 115
L+S+P G P +VL L N + L G F L L L L +N VLPA +
Sbjct: 19 KSLASVPTGI---PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73
Query: 116 ----GNLKNLQ 122
L L
Sbjct: 74 FDKLTQLTQLS 84
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 62.7 bits (153), Expect = 1e-11
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
++ + I + + K G + + A + P+++ Y +K AV L +LA +
Sbjct: 104 SVWSSAIAAKLATTHL--KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKD 161
Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPK 204
N +I P +DT + N K
Sbjct: 162 SGLPDN--SAVLTIMPVTLDTPM--NRK 185
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 63.4 bits (155), Expect = 1e-11
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGL----PNLVPYCASKFAVRGLMEALAEEL 176
+P ++++ G IV ISS AG+ G+ P V Y A+K V GLM A L
Sbjct: 141 IPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLL 193
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 62.5 bits (153), Expect = 2e-11
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+P M+++ +G IV +S+AGI G PY +K + GL ++A
Sbjct: 128 IPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHY 175
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 61.8 bits (151), Expect = 3e-11
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ + ++ I+S G L Y ++ A L+E+ A+ L
Sbjct: 118 IAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTL 165
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 61.4 bits (150), Expect = 4e-11
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIV-GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK 186
FLP M+ + G+I+ +SS+A V G+ N Y +K AV GL +++A + + I+
Sbjct: 116 FLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADF---IQQ-GIR 171
Query: 187 FTSIFPFMVDTGL 199
+ P VDT
Sbjct: 172 CNCVCPGTVDTPS 184
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 61.4 bits (150), Expect = 4e-11
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+E+++G +V ++SM Y +K A+ + + LA EL
Sbjct: 134 ALEESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATEL 178
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 61.5 bits (150), Expect = 5e-11
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 129 LPDMMEKNR--GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
M + G I+ S++ PN PY A+K A+ GL ++ A + R
Sbjct: 155 FRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDGRMH 207
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 61.0 bits (149), Expect = 6e-11
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
N K L + M + GHIV ISS+ I L N SK A+ L LA EL
Sbjct: 113 NAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVEL 172
Query: 177 REDARNSKIKFTSIFPFMVDT----GLCKNPKIKMNRLSSLPRG 216
+ I ++ +DT + + + P G
Sbjct: 173 S--PKQ--IIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAG 212
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 61.0 bits (149), Expect = 7e-11
Identities = 24/60 (40%), Positives = 30/60 (50%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
NL ++ +F M+ G IV I+SM G N+ Y ASK AV GL ALA E
Sbjct: 137 NLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEW 196
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 61.1 bits (149), Expect = 8e-11
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+P M +K G I+ I+S G+V P Y A+K + GL + +A E+
Sbjct: 147 IPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEV 194
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 61.0 bits (148), Expect = 1e-10
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAE 174
N + + + +P + + HI+ IS + Y +K+ + + +AE
Sbjct: 160 NTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAE 219
Query: 175 ELREDARNSKIKFTSIFP-FMVDT 197
E + + I +++P + T
Sbjct: 220 EFKGE-----IAVNALWPKTAIHT 238
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 60.2 bits (147), Expect = 1e-10
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 129 LPDMME-KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
+ +E +G ++ +SS+ + P V Y ASK ++ + E LA E A I+
Sbjct: 128 IKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEY---AP-KGIRV 183
Query: 188 TSIFPFMVDT----GLCKNPKIKMNRLSSLPRG 216
+I P ++T +P+ + + S +P G
Sbjct: 184 NNIGPGAINTPINAEKFADPEQRADVESMIPMG 216
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 60.2 bits (147), Expect = 1e-10
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
P + G+I+ +SS+AG+V Y A+K A+ L LA E
Sbjct: 135 HPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEW 182
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 59.9 bits (146), Expect = 1e-10
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+L M+E+ G ++ I+S A I+ + Y A+K L +LAE
Sbjct: 127 YLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELT 175
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 59.8 bits (146), Expect = 2e-10
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+P M G I+ ++S + + Y ++K A G ALA +L
Sbjct: 125 VPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDL 172
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 59.9 bits (146), Expect = 2e-10
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
P + IV IS G + YCA+K + L + A A +K
Sbjct: 140 CEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARF---A--PLVKV 194
Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLP 214
I P ++ + + N L+
Sbjct: 195 NGIAPALLMFQPKDDAAYRANALAKSA 221
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 59.8 bits (146), Expect = 2e-10
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
P M + G I+ ISSMAG + Y +SK AV L +A ++
Sbjct: 131 APHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDV 178
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 59.5 bits (145), Expect = 2e-10
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
LP + +V S AG G P Y ASK A+R +L++ I+
Sbjct: 146 LPLL--ARGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDR----GIRIN 199
Query: 189 SIFPFMVDTGL 199
++ P +T
Sbjct: 200 TLSPGPTETTG 210
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 59.6 bits (145), Expect = 2e-10
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 17/86 (19%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGL-----------PNLVPYCASKFAVRGLMEALAEELR 177
LP + I+ S+AG++ P Y +K V LA +L
Sbjct: 140 LPYLTS--GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQL- 196
Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNP 203
A S I+ I P V+T + +
Sbjct: 197 --APQS-IRANVIHPTNVNTDMLNSA 219
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 59.5 bits (145), Expect = 3e-10
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 129 LPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEEL 176
+P + G + SS G G + PY ASK + GL++ALA EL
Sbjct: 129 VPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVEL 177
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 59.1 bits (144), Expect = 3e-10
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
++ M ++ GHI+ I+S L Y +++ L AL++EL
Sbjct: 104 LQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKEL 163
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 59.1 bits (144), Expect = 3e-10
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
LP M +N G I+ I+S+ G+VG Y A+K V GL + + E
Sbjct: 122 LPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLET 169
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 58.4 bits (142), Expect = 6e-10
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+L I+ + +P M++K G I+ I SM +G + Y A+K ++ L + +A E
Sbjct: 142 DLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEY 201
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 58.3 bits (142), Expect = 6e-10
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
++ + M+EK G +V I S+ + +L + V G++ LA EL
Sbjct: 116 LARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALEL 175
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 57.9 bits (141), Expect = 7e-10
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAEEL 176
M+E+ +G IV I SM+G++ Y ASK V + +LA E
Sbjct: 133 VGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEW 183
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 58.0 bits (141), Expect = 8e-10
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 129 LPDMMEKNRGHIVGISSMAGI--VGLPNLVPYCASKFAVRGLMEALAEEL 176
+P + ++ G IV +SS+ G P Y A+K A +++ LA EL
Sbjct: 149 VPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALEL 198
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 57.1 bits (139), Expect = 1e-09
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M ++ G IV SS A + Y +K + GL + L+ EL
Sbjct: 132 YKKMTKRGGGAIVNQSSTAAWLYSNY---YGLAKVGINGLTQQLSREL 176
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 57.1 bits (139), Expect = 1e-09
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 132 MMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSI 190
+EK G+I+ + + P ++ A+K V + + LA E R I+ +I
Sbjct: 129 WIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEW---GRKYGIRVNAI 185
Query: 191 FP-F----MVDTGLCKNPKIKMNRLSSLPRG 216
P L + ++ + S+P G
Sbjct: 186 APGPIERTGGADKLWISEEMAKRTIQSVPLG 216
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 56.8 bits (138), Expect = 1e-09
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
N+ I+ +LP M EK G IV I+S + I + NL +++ A+ G ++ L+ E+
Sbjct: 112 LFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEV 171
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 56.8 bits (138), Expect = 2e-09
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAEELRED 179
LP +++ HI+ ++ + Y +K + + LA E
Sbjct: 133 LPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQ 185
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 56.9 bits (138), Expect = 2e-09
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
+V + + LP Y +K A+ GL A A EL R+ I+ ++
Sbjct: 156 AWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELA--PRH--IRVNAVA 211
Query: 192 PFMVDTGLCKNPKIKMNRLSSLP--RGFG 218
P + + + +P +
Sbjct: 212 PGLSLLPPAMPQETQEEYRRKVPLGQSEA 240
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 56.8 bits (138), Expect = 2e-09
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ + G IV ++S A + Y ASK A++ L ++ EL
Sbjct: 117 MNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLEL 164
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 56.8 bits (138), Expect = 2e-09
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 132 MMEKNRGHIVGISSMA-GIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ +G IV ISS+A G+ P+ Y +K A+ A +L
Sbjct: 135 HLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDL 180
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 56.4 bits (137), Expect = 2e-09
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLP--NLVPYCASKFAVRGLMEALAEEL 176
F M+ + G IV + SM+G + Y ASK AV L ALA E
Sbjct: 127 FGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEW 177
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 56.5 bits (137), Expect = 2e-09
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
LP M ++ G I+ I+S G+V N Y A+K V G + A E
Sbjct: 126 LPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALET 173
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 56.4 bits (137), Expect = 2e-09
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
P + + G IV SS+A G P + Y ASK A+ LA EL I+
Sbjct: 125 TPLI--REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPR----GIRVN 178
Query: 189 SIFPFMVDT 197
S+ P +DT
Sbjct: 179 SVSPGFIDT 187
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 56.5 bits (137), Expect = 2e-09
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 129 LPDMMEKNRGH---IVGISSMAGIVGLPNLVPYCASKFAVRGL--MEALAEELREDARNS 183
L M ++N G I+ +SS+AG++ + YCASK + G ALA L
Sbjct: 121 LDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANL--MNSG- 177
Query: 184 KIKFTSIFPFMVDT 197
++ +I P V+T
Sbjct: 178 -VRLNAICPGFVNT 190
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 56.4 bits (137), Expect = 2e-09
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEE 175
NL + + E + I+ I S+ V +PN+ Y ASK V L +ALA+E
Sbjct: 130 NLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKE 189
Query: 176 L 176
Sbjct: 190 W 190
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase;
2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Length = 283
Score = 56.6 bits (136), Expect = 2e-09
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 278 QIMLEPRWVISMGSCANGGGYYHYSYSV--------VRGCDRIIPVDIYVPGCPPTAEAL 329
+ + +++G+C+ GG +V ++I + + VPGCPP + +
Sbjct: 112 DLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWM 171
Query: 330 MYGILQLQKKVK 341
+ ++ V
Sbjct: 172 VGTLVAAWSHVL 183
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 55.9 bits (136), Expect = 3e-09
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 128 FLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+ +N G I+ I S+ P + PY A+K ++ L ++A E
Sbjct: 128 AAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEW 177
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 56.1 bits (136), Expect = 3e-09
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 132 MMEKNRGHIVGISSM-AGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ ++G IV +SS+ AG P+ + Y +K A+ + A +L
Sbjct: 135 HLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDL 180
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 56.1 bits (136), Expect = 3e-09
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 129 LPDMMEKNRGHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEALAEELRED 179
+P M ++ HI+ +S + PY +K+ + +AEELR+
Sbjct: 136 IPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDA 187
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 55.6 bits (135), Expect = 3e-09
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEEL 176
P M E G ++ I S+ + Y +K A+ GL ALA+E
Sbjct: 112 AAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEW 162
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 55.6 bits (135), Expect = 5e-09
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
L + G IV +S+ G + Y A+K V L A E
Sbjct: 144 LRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEA 192
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 54.6 bits (132), Expect = 5e-09
Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
L ++ + + + +G + + + + AV ++ A E+
Sbjct: 89 KLGGQINLVLLGIDSLND--KGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEM 146
Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPV 222
R I+ ++ P +++ ++L GF P
Sbjct: 147 ---PRG--IRINTVSPNVLEES--------WDKLEPFFEGFLPVPA 179
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 54.9 bits (133), Expect = 8e-09
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 20/94 (21%)
Query: 90 GNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILETFL------PDMMEKNRGHIVG 142
GNF A L N F+ V+ +I + TF + G IV
Sbjct: 115 GNFLCP----AGALSFNAFKTVM--DI-DTSG------TFNVSRVLYEKFFRDHGGVIVN 161
Query: 143 ISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
I++ G G V ++K AV + LA E
Sbjct: 162 ITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEW 195
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 54.9 bits (133), Expect = 9e-09
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 132 MMEKNRGHIVGISSM-AGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ K +G IV +SS+ AG Y +K A+ A +L
Sbjct: 153 HLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDL 198
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 54.9 bits (133), Expect = 9e-09
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 132 MMEKNRGHIVGISSMAG-IVGLPNL-VPYCASKFAVRGLMEALAEELREDAR 181
+ +G ++ SS++G IV +P L PY +K A L ++LA E AR
Sbjct: 159 FKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPFAR 210
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 54.2 bits (131), Expect = 1e-08
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
M+ +G IV ISS + + N VPY K A L A ELR
Sbjct: 133 ARLMVPAGQGLIVVISSPGSLQYMFN-VPYGVGKAACDKLAADCAHELRR 181
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 54.2 bits (131), Expect = 1e-08
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M E G IV I+S G G+ PY ASK V G +++ EL
Sbjct: 147 GGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFEL 193
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 53.8 bits (130), Expect = 2e-08
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
LP + G +A G + + Y SK+AV L +
Sbjct: 125 LPMVEAMLAGDEARAIELAEQQGQTH-LAYAGSKYAVTCLARRNVVDW 171
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 54.2 bits (131), Expect = 2e-08
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ IV + Y K A+ GL ++ A EL
Sbjct: 166 NPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHALVGLTQSAALEL 212
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 53.7 bits (130), Expect = 2e-08
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 132 MMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAEELREDAR 181
E+ G +V +SM+G + Y +K + +LA E R+ AR
Sbjct: 147 FKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDFAR 198
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 53.3 bits (129), Expect = 3e-08
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLV--PYCASKFAVRGLMEALAEEL 176
+M+++ GHIV I++ + + +K + + +LA E
Sbjct: 139 AAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEF 188
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding,
oxidoreductase, oxygen tolerance; HET: FSX SBY PSW;
2.04A {Desulfovibrio vulgaris}
Length = 317
Score = 53.2 bits (127), Expect = 4e-08
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 279 IMLEPRWVISMGSCANGGG----YYHYSYSV----VRGCDRIIPVDIYVPGCPPTAEALM 330
V+++G+CA GG + + G + I + +PGCPP + ++
Sbjct: 142 FGPNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIV 201
Query: 331 YGILQLQKKVKRMKILQSWYRR 352
++ +K+ +
Sbjct: 202 GTVVLALDAIKKNGLEGGLAEV 223
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 52.6 bits (127), Expect = 5e-08
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 117 NLKNL----QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP-YCASKFAVRGLMEA 171
N+ ++ Q +L +N ++ I S+AGI + Y SK A+ L
Sbjct: 136 NVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRM 195
Query: 172 LAEEL 176
LA+EL
Sbjct: 196 LAKEL 200
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 52.6 bits (127), Expect = 5e-08
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 132 MMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+++ + + I+++ G +VP ++K V + ++LA E
Sbjct: 150 LIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEW 195
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 52.2 bits (126), Expect = 5e-08
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+E+ G IV I+S G G+ + PY ASK V G +AL EL
Sbjct: 147 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLEL 191
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 51.3 bits (124), Expect = 9e-08
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ KN+G I+ I+S P+ Y ++K + L ALA L
Sbjct: 120 ELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSL 164
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 51.0 bits (123), Expect = 1e-07
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 133 MEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFP 192
M N GHI+ I++ Y +K V A ++EL + I +I P
Sbjct: 137 MNPN-GHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELM--KQQ--ISVNAIAP 191
Query: 193 FMVDT 197
+DT
Sbjct: 192 GPMDT 196
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 51.0 bits (123), Expect = 1e-07
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M + G ++ I+S G PN+ Y A+K V G ALA EL
Sbjct: 123 TDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATEL 171
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 51.2 bits (123), Expect = 2e-07
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 117 NLKNLQIILETFLPDMME------KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
N +++ F + I+ + L Y +K A+ GL
Sbjct: 150 NAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTR 209
Query: 171 ALAEEL 176
+ A EL
Sbjct: 210 SAALEL 215
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 51.3 bits (123), Expect = 2e-07
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 117 NLKNLQIILETFLPDMME------KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
N +++ F + I+ + L Y +K A+ GL
Sbjct: 187 NAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTR 246
Query: 171 ALAEEL 176
+ A EL
Sbjct: 247 SAALEL 252
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 50.6 bits (122), Expect = 2e-07
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 129 LPDMMEKNRGHIVGISS-MAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
+ + G I+ I S +A +V P + Y ASK A+ GL + LA +L R I
Sbjct: 152 SRHLGDG--GRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLG--PRG--ITV 205
Query: 188 TSIFPFMVDT 197
+ P DT
Sbjct: 206 NIVHPGSTDT 215
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 50.7 bits (122), Expect = 2e-07
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+++ G IV I G P V A++ V L ++LA E
Sbjct: 146 WMKEHGGSIVNIIVP-TKAGFPLAVHSGAARAGVYNLTKSLALEW 189
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 50.8 bits (122), Expect = 3e-07
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP---NLVPYCASKFAVRGLMEALA 173
NL Q + E + + G ++G+SSMAGI G N Y +K + GL EALA
Sbjct: 319 NLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTN---YATTKAGMIGLAEALA 375
Query: 174 EEL 176
L
Sbjct: 376 PVL 378
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 51.2 bits (123), Expect = 3e-07
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
P +EK G I+ I+S +GI G Y +SK + GL + +A E
Sbjct: 439 PYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGA 486
Score = 50.5 bits (121), Expect = 4e-07
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTS 189
P ++ G IV SS AG+ G Y ++K A+ G E LA+E N IK +
Sbjct: 135 PYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGA--KYN--IKANA 190
Query: 190 IFPF 193
I P
Sbjct: 191 IAPL 194
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 49.8 bits (120), Expect = 4e-07
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 132 MMEKNR-GHIVGISSMAGIVGLP--NLVPYCASKFAVRGLMEALAEEL 176
M+++ G I+ +SM+G + + YC SK AV L +A+A EL
Sbjct: 155 MVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVEL 202
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 49.5 bits (119), Expect = 4e-07
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
I+ ISS A + LP+ + Y +K A+ + LA++L AR I +I P V T
Sbjct: 141 SRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLG--ARG--ITVNAILPGFVKT 196
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 49.5 bits (119), Expect = 4e-07
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
G I+ +S+ + P+ Y A+K V + L++ELR R+ I ++ P T
Sbjct: 155 GRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELR--GRD--ITVNAVAPGPTAT 210
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 49.5 bits (119), Expect = 5e-07
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 132 MMEKNR---GHIVGISSMAGIVGLPN-LVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
M G IV +SSMA I+G V Y ASK A+ LA E+ A I+
Sbjct: 151 MSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVA--AEG--IRV 206
Query: 188 TSIFPFMVDT 197
++ P +++T
Sbjct: 207 NAVRPGIIET 216
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 49.5 bits (119), Expect = 5e-07
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEE 175
N+ ++ L ++ G +V SS+ G I G P Y A+K A G M A E
Sbjct: 119 NVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIE 178
Query: 176 L 176
L
Sbjct: 179 L 179
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 49.7 bits (119), Expect = 6e-07
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
M ++N G I+ +S +GI G Y A+K + GL L E R
Sbjct: 136 DHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGR 183
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 49.7 bits (119), Expect = 6e-07
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 41/158 (25%)
Query: 4 ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI--------------ETLPTSL 44
+ + LS N + + L+ LE L L NN + +
Sbjct: 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155
Query: 45 SSLPKLRILNLGMNRL-----SSLPRGFGAFPVLEVLDLTYNNLNE--------QSLPGN 91
+ P LR + G NRL + F + +L + + N + + L
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215
Query: 92 FFMLETLRALYLGDNDF-----EVLPAEIGNLKNLQII 124
+ L+ L L DN F L + + NL+ +
Sbjct: 216 ----QELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249
Score = 48.2 bits (115), Expect = 2e-06
Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 32/132 (24%)
Query: 4 ITRITLSHNKLKE------IPPGLANLVNLEILTLFNNQI-----ETLPTSLSSLPKLRI 52
+ + + N ++ + GLA L++L L +N L +L S P LR
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248
Query: 53 LNLGMNRLSSLPRGFGAF---------PVLEVLDLTYNNLNE-------QSLPGNFFMLE 96
L L LS+ RG A L+ L L YN + + +
Sbjct: 249 LGLNDCLLSA--RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK---MP 303
Query: 97 TLRALYLGDNDF 108
L L L N F
Sbjct: 304 DLLFLELNGNRF 315
Score = 42.8 bits (101), Expect = 1e-04
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 24/129 (18%)
Query: 4 ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI-----ETLPTSLSSLPKLRIL 53
I +L + + K + L +++ + L N I L +++S L I
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 54 NLGMNRLSSL----PRGFGAF-------PVLEVLDLTYNNLNEQSLPGNFFMLE---TLR 99
+ P P L + L+ N + L L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 100 ALYLGDNDF 108
LYL +N
Sbjct: 126 HLYLHNNGL 134
Score = 34.3 bits (79), Expect = 0.052
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 22/103 (21%)
Query: 4 ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQIET-----LPTSLSSL--PKLR 51
+ + L N + L + NL L L + + + + S L L+
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277
Query: 52 ILNLGMNRLSSLPRGFGAF--------PVLEVLDLTYNNLNEQ 86
L L N + P L L+L N +E+
Sbjct: 278 TLRLQYNEIE--LDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 48.7 bits (117), Expect = 9e-07
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 129 LPDMMEKNR---GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
L M+ + I+ I+S++ ++ P + YC SK + + LA L
Sbjct: 152 LKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRL 202
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution
[NIFE]hydrogenase, oxidoreductase, NI-A state, unready
state; HET: NFC; 1.04A {Desulfovibrio vulgaris str}
SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S
1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S
1wuk_S 1wul_S 1e3d_A*
Length = 267
Score = 48.4 bits (115), Expect = 1e-06
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 271 IGNLKNLQIMLE----PRWVISMGSCANGGG--YYHYSYSVVRGCDRIIP----VDIYVP 320
+ N L I + VI+ G+CA GG + + +G + + I +
Sbjct: 89 VANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIA 148
Query: 321 GCPPTAEALMYGILQ 335
GCPP L+ I+
Sbjct: 149 GCPPNPYNLVGTIVY 163
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 48.3 bits (116), Expect = 1e-06
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 132 MMEKNR-GHIVGISSMAG-IVGLPNL------VPYCASKFAVRGLMEALAEEL 176
++K + G IV SSM+ I+ +L V Y +SK A L++ LA E
Sbjct: 138 WLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEW 190
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A
{Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Length = 264
Score = 48.4 bits (115), Expect = 1e-06
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 278 QIMLEPRWVISMGSCANGGG--YYHYSYSVVRGCDRIIPV----DIYVPGCPPTAEALMY 331
++ + + VI++G+CA GG + + G + + I + GCPP +
Sbjct: 98 EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 157
Query: 332 GILQL 336
++ L
Sbjct: 158 TVVHL 162
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD,
oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP:
e.19.1.1
Length = 317
Score = 48.5 bits (115), Expect = 1e-06
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 271 IGNLKNLQIMLE----PRWVISMGSCANGGG--YYHYSYSVVRGCDRIIP----VDIYVP 320
+ N L I + VI+ G+CA GG + + +G + + I +
Sbjct: 139 VANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIA 198
Query: 321 GCPPTAEALMYGILQ 335
GCPP L+ I+
Sbjct: 199 GCPPNPYNLVGTIVY 213
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 48.0 bits (115), Expect = 2e-06
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 129 LPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEEL 176
L + RG ++ SS+ G + G P Y ASK A G M A EL
Sbjct: 162 LAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIEL 210
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 47.2 bits (113), Expect = 2e-06
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 129 LPDMMEKNR-----GHIVGISSMAGIVG-LPNLVPYCASKFAVRGLMEALAEEL 176
LP + + ++ S+AG G P Y A+K + + + +
Sbjct: 129 LPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFH 182
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase,
membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio
marinus} PDB: 3ayy_B 3ayz_B
Length = 283
Score = 46.9 bits (111), Expect = 3e-06
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 271 IGNLKNLQIMLE----PRWVISMGSCANGGGYY--HYSYSVVRGCDRIIPVD-----IYV 319
IG + + + +IS GSCA+ G + + + + I V
Sbjct: 96 IGGRPFSEQLKRMADDAKAIISWGSCASWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKV 155
Query: 320 PGCPPTAEALMYGILQL 336
PGCPP AE + I +
Sbjct: 156 PGCPPIAEVMTGVITYM 172
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 46.4 bits (111), Expect = 4e-06
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVG-LPNLVPYCASKFAVRGLMEALAEEL 176
LP M + G IV SS AG G P + Y SK AV LA+E+
Sbjct: 130 LPKMAKG--GAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEV 176
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 46.5 bits (111), Expect = 5e-06
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
RG +V +S+AG G Y A+K V GL A A +L + + I+ +I P +
Sbjct: 166 RGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARDL---SS-AGIRVNTIAPGTMK 221
Query: 197 TGL 199
T +
Sbjct: 222 TPI 224
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase
unready state, oxidoreductase; 1.83A {Desulfovibrio
fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Length = 264
Score = 46.1 bits (109), Expect = 6e-06
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 278 QIMLEPRWVISMGSCANGGG--YYHYSYSVVRGCDRIIPVDIY-VPGCPPTAEALMYGIL 334
+ + + +I +G+C+ GG + S +G + V +PGCPP + ++
Sbjct: 100 KAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVV 159
Query: 335 QLQKKVKRMKILQSWYR 351
+ K + L R
Sbjct: 160 HV--LTKGIPDLDENGR 174
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase,
oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB:
3usc_S* 3use_S*
Length = 335
Score = 46.6 bits (110), Expect = 6e-06
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 278 QIMLEPRWVISMGSCANGGG--YYHYSYSVVRGCDRIIP--VDIYVPGCPPTAEALMYGI 333
+ +I+ G+CA+ G + + D++I I VPGCPP + + I
Sbjct: 101 RAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAII 160
Query: 334 LQL 336
+
Sbjct: 161 TYM 163
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 46.0 bits (110), Expect = 6e-06
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 129 LPDMMEKNRGHIVGISS-MAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
+ E G IV SS + +P Y SK AV + +++ + I
Sbjct: 139 YRHLTEG--GRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCG--DKK--ITV 192
Query: 188 TSIFPFMVDT 197
++ P T
Sbjct: 193 NAVAPGGTVT 202
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 46.1 bits (110), Expect = 7e-06
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 138 GHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
G ++ + S+ G +P Y SK A+ +A ++ + I + P +
Sbjct: 157 GRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMA--DKK--ITVNVVAPGGIK 212
Query: 197 T 197
T
Sbjct: 213 T 213
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE]
hydrogenase, high-resolution knallgasbacteria,
proteobacteria; 1.50A {Ralstonia eutropha}
Length = 339
Score = 46.2 bits (109), Expect = 8e-06
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 271 IGNLKNLQIMLE----PRWVISMGSCANGGGYY--HYSYSVVRGCDRIIPVD--IYVPGC 322
IG ++ + + +IS GSCA+ G + + ++I I VPGC
Sbjct: 90 IGGRPFIEQLKYVAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGC 149
Query: 323 PPTAEALMYGILQL 336
PP AE + I +
Sbjct: 150 PPIAEVMTGVITYM 163
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 45.7 bits (109), Expect = 9e-06
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 138 GHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEALAEELR 177
G I+ SS+A + G+PN Y SK AV G A A +
Sbjct: 149 GRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCG 189
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 45.7 bits (109), Expect = 1e-05
Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 24/128 (18%)
Query: 4 ITRITLSHNKL-----KEIPPGLA-NLVNLEILTLFNNQI-----ETLPTSLSSLPKLRI 52
+T+S+N + + + GL + LE L L + + L ++S LR
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231
Query: 53 LNLGMNRLSSLPRGFGAF--------PVLEVLDLTYNNLNEQSLPGNFFMLE---TLRAL 101
L LG N+L G L L + + + +L +L+ L
Sbjct: 232 LALGSNKLGD--VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289
Query: 102 YLGDNDFE 109
L N+
Sbjct: 290 SLAGNELG 297
Score = 43.4 bits (103), Expect = 8e-05
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 24/127 (18%)
Query: 4 ITRITLSHNKL-----KEIPPGLANL-VNLEILTLFNNQI-----ETLPTSLSSLPKLRI 52
+ + L N+L + GL ++ L+L N + L ++L +LP L+
Sbjct: 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117
Query: 53 LNLGMNRLSSLPRGFGAF--------PVLEVLDLTYNNLNEQSLPGNFFMLE---TLRAL 101
L+L N L G LE L L Y +L+ S +L + L
Sbjct: 118 LHLSDNLLG--DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 102 YLGDNDF 108
+ +ND
Sbjct: 176 TVSNNDI 182
Score = 42.3 bits (100), Expect = 2e-04
Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 20/125 (16%)
Query: 4 ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI-----ETLPTSLSSL-PKLRI 52
+ L L K+I L L L L +N++ + L + K++
Sbjct: 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89
Query: 53 LNLGMNRLS-----SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE----TLRALYL 103
L+L L+ L P L+ L L+ N L + L L L L L
Sbjct: 90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149
Query: 104 GDNDF 108
Sbjct: 150 EYCSL 154
Score = 41.1 bits (97), Expect = 4e-04
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 32/132 (24%)
Query: 4 ITRITLSHNKL-----KEIPPGLAN-LVNLEILTLFNNQI-----ETLPTSLSSLPKLRI 52
+ ++L+ N+L + + L LE L + + + L+ L
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345
Query: 53 LNLGMNRLSSLPRGFGAF--------PVLEVLDLTYNNLNEQS-------LPGNFFMLET 97
L + NRL G VL VL L ++++ S L N +
Sbjct: 346 LQISNNRLED--AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN----HS 399
Query: 98 LRALYLGDNDFE 109
LR L L +N
Sbjct: 400 LRELDLSNNCLG 411
Score = 41.1 bits (97), Expect = 4e-04
Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 20/125 (16%)
Query: 4 ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQIET------LPTSLSSLPKLRI 52
I +++L + L + L L L+ L L +N + L +L
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146
Query: 53 LNLGMNRLSS-----LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE----TLRALYL 103
L L LS+ L A P + L ++ N++NE + L+ L AL L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206
Query: 104 GDNDF 108
Sbjct: 207 ESCGV 211
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 26 NLEILTLFNNQI--ETLPTSLSSLPKLRILNLGMNRLS-----SLPRGFGAFPVLEVLDL 78
+++ L + ++ L L + +++ L L+ + P L L+L
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 79 TYNNLNEQSLPGNFFMLE----TLRALYLGDNDF 108
N L + + L+ ++ L L +
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97
Score = 38.4 bits (90), Expect = 0.003
Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 20/125 (16%)
Query: 4 ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI-----ETLPTSLSSLP-KLRI 52
+ ++ L + L + + L + + LT+ NN I L L P +L
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203
Query: 53 LNLGMNRLS-----SLPRGFGAFPVLEVLDLTYNNLNEQSL----PGNFFMLETLRALYL 103
L L ++ L + L L L N L + + PG LR L++
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263
Query: 104 GDNDF 108
+
Sbjct: 264 WECGI 268
Score = 38.4 bits (90), Expect = 0.003
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 4 ITRITLSHNKL-----KEIPPGLA-NLVNLEILTLFNNQI-----ETLPTSLSSLPKLRI 52
+ + +S+N+L +E+ GL L +L L + + +L +L + LR
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402
Query: 53 LNLGMNRLSSLPRGFGAF--------PVLEVLDLTYNNLNEQ 86
L+L N L G +LE L L +E+
Sbjct: 403 LDLSNNCLG--DAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442
Score = 36.9 bits (86), Expect = 0.008
Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 24/127 (18%)
Query: 4 ITRITLSHNKLKEIPPGLANLV--------NLEILTLFNNQI-----ETLPTSLSSLPKL 50
+ + LS N L + GL L LE L L + E L + L + P
Sbjct: 115 LQELHLSDNLLGD--AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172
Query: 51 RILNLGMNRLS-----SLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLE---TLRAL 101
+ L + N ++ L +G P LE L L + + ++ +LR L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232
Query: 102 YLGDNDF 108
LG N
Sbjct: 233 ALGSNKL 239
Score = 36.9 bits (86), Expect = 0.009
Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 20/125 (16%)
Query: 4 ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQIET------LPTSLSSLPKLRI 52
+ + L + +++ +A+ +L L L +N++ P L +LR
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260
Query: 53 LNLGMNRLSS-----LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE----TLRALYL 103
L + +++ L R A L+ L L N L ++ L L +L++
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320
Query: 104 GDNDF 108
F
Sbjct: 321 KSCSF 325
Score = 29.2 bits (66), Expect = 2.3
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 15/64 (23%)
Query: 4 ITRITLSHNKLKEIPPGLANLV--------NLEILTLFNNQI-----ETLPTSLSSLPKL 50
+ + LS+N L G+ LV LE L L++ + L P L
Sbjct: 400 LRELDLSNNCLG--DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 457
Query: 51 RILN 54
R+++
Sbjct: 458 RVIS 461
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 45.6 bits (108), Expect = 1e-05
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
P M ++N G I+ SS +GI G V Y A+K + GL +A E
Sbjct: 146 PYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGA 193
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 44.6 bits (106), Expect = 2e-05
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 28/88 (31%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG---------------------------- 148
N +++ FLP + + ++ V ISS+A
Sbjct: 86 NYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEH 145
Query: 149 IVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ Y SK A+ + A
Sbjct: 146 AGEQGGNLAYAGSKNALTVAVRKRAAAW 173
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 44.9 bits (107), Expect = 2e-05
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
I+ SS+ P+L+ Y A+K A+ LA+++
Sbjct: 179 ASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQV 217
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 44.0 bits (105), Expect = 2e-05
Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEEL 176
M EKN G IV +S V L NL Y AS V GL LA EL
Sbjct: 120 SEAMREKNPGSIVLTAS---RVYLGNLGQANYAASMAGVVGLTRTLALEL 166
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 44.1 bits (105), Expect = 3e-05
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M G ++ I S++G+ G+ N Y ASK V G+ ++A EL
Sbjct: 127 MQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIAREL 171
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 44.1 bits (105), Expect = 3e-05
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ M+E+ G IV I S+ G G Y ++K + G + LA E
Sbjct: 146 IAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALET 193
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 43.7 bits (104), Expect = 3e-05
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ M+E+ G I+ ISS+ G G Y +K + G +LA+E+
Sbjct: 133 VIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEV 181
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 43.7 bits (104), Expect = 3e-05
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ E G +V S+AG +G L Y A K V GL LA EL
Sbjct: 123 GEVLEEG--GSLVLTGSVAG-LGAFGLAHYAAGKLGVVGLARTLALEL 167
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 43.7 bits (104), Expect = 4e-05
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+ +G +V ISS+ G++G Y ASK + G +LA EL
Sbjct: 133 MLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLAREL 177
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 43.8 bits (104), Expect = 4e-05
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
RG I+ +S+A G Y ASK + G+ +A +L A I+ +I P +
Sbjct: 149 RGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDL---AP-IGIRVMTIAPGLFG 204
Query: 197 TGL 199
T L
Sbjct: 205 TPL 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 4e-05
Identities = 71/437 (16%), Positives = 112/437 (25%), Gaps = 158/437 (36%)
Query: 30 LTLFNNQIET---LPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQ 86
LTL + +E +PT+ S L F +L + +E
Sbjct: 9 LTLSHGSLEHVLLVPTASFF------------IASQLQEQFNK--ILPEPTEGFAADDEP 54
Query: 87 SLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN-LQIILETFLPDMMEKNRGHIVGISS 145
+ P E L +LG V P+++G L + L F +E N H + +
Sbjct: 55 TTP-----AE-LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-AAK 107
Query: 146 MAGIVGLPNLVP-------YCASKFAVRGLMEALAEELREDARNSKIKFTSIF------- 191
+ + A A R + L + +IF
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 192 --------------PFMVDTGLCKNPKIKMNRLSS--------LPRGFGAFPVLE----- 224
+ D L K ++ L +G LE
Sbjct: 168 DYFEELRDLYQTYHVLVGD--LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 225 ---------AFSFTTI--------------LDLTYNNLNEQSLPG--------------- 246
S I L T L L G
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKGATGHSQGLVTAVAIA 284
Query: 247 ------NFF--MLETLRAL-YLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCANGGG 297
+FF + + + L ++G +E P L P I S N G
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYP---------NTSLPPS--ILEDSLENNEG 333
Query: 298 YYHYSYSVVRGCDR-----II-------PVD--IY-----------VPGCPPTAEALMYG 332
S + + + P + V G PP ++L YG
Sbjct: 334 VPSPMLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-PP--QSL-YG 388
Query: 333 I-LQLQKKVKRMKILQS 348
+ L L+K + QS
Sbjct: 389 LNLTLRKAKAPSGLDQS 405
Score = 40.4 bits (94), Expect = 8e-04
Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 54/215 (25%)
Query: 61 SSLPRGFGA-FPVLEVLDLTYNNLNE------QSLPGNFFMLETLR-ALYLGDNDFEVL- 111
SL G P+L + +LT + + LP + + +L G + V+
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG----KQVEISLVNGAKNL-VVS 380
Query: 112 -PAEIGNLKNLQIILE-TFLPDMMEKNRGHIVGISSMAGIVG---LPNLVPYCASKFAVR 166
P + +L L + L P ++++R + S LP P+ +
Sbjct: 381 GPPQ--SLYGLNLTLRKAKAPSGLDQSR---IPFSERKLKFSNRFLPVASPFHSH----- 430
Query: 167 GLMEALAEELREDARNSKIKFTSI---FP-FMVDTG--LCKNPKIKMNRLSSLPRGFGAF 220
L+ ++ + +D + + F + P + G L + +
Sbjct: 431 -LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG---SISERIVDCIIRL 486
Query: 221 PV----LEAFSFTTILD-----------LTYNNLN 240
PV F T ILD LT+ N +
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 28.9 bits (64), Expect = 3.4
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 42/134 (31%)
Query: 74 EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMM 133
+L T Q P + +A FE L ++ G +
Sbjct: 1724 GLLSATQFT---Q--PA---LTLMEKAA------FEDLKSK-GLIP---------ADATF 1759
Query: 134 EKNRGHIVG----ISSMAGIVGLPN---LVPYCASKFAVRGLMEALAEELREDARNSKIK 186
GH +G ++S+A ++ + + +V RG+ +A E R S
Sbjct: 1760 A---GHSLGEYAALASLADVMSIESLVEVV-------FYRGMTMQVAVPRDELGR-SNYG 1808
Query: 187 FTSIFPFMVDTGLC 200
+I P V
Sbjct: 1809 MIAINPGRVAASFS 1822
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 43.3 bits (103), Expect = 5e-05
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+++ G I+ I+S+ G +G P Y A+K V GL + +A+EL
Sbjct: 149 AKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKEL 196
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 43.2 bits (103), Expect = 5e-05
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+++ G I+ I+S+AGI+G Y ASK + G +++A+E
Sbjct: 126 SKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEF 173
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 43.3 bits (103), Expect = 5e-05
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 117 NLKNLQIILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
NLK ++ + ++ G I+ ISS+ G VG Y ASK V GL + A E
Sbjct: 123 NLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARE 182
Query: 176 L 176
L
Sbjct: 183 L 183
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 42.9 bits (102), Expect = 7e-05
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
MM+K +G I+ I+S+ G++G Y A+K V G + A E
Sbjct: 122 TKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREG 169
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 42.8 bits (102), Expect = 7e-05
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
MM + G IV I+S+ G+ G P Y A+K V GL + A+EL
Sbjct: 125 SRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKEL 172
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 42.9 bits (102), Expect = 8e-05
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+ G I+ ISS+ G+ G Y +SK V G ++LA+EL
Sbjct: 164 SKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKEL 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 8e-05
Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 51/211 (24%)
Query: 107 DFEVLPAEIGNLKNLQIILETFLPDM-------MEKNRGHIVGISSMAGIVGLPNLVPYC 159
DFE + L + + F+ + M K+ I+ + I+ + V
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVS-- 62
Query: 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGA 219
L L + ++ F V+ L N K M+ + + R
Sbjct: 63 ----GTLRLFWTL-----LSKQEEMVQ---KF---VEEVLRINYKFLMSPIKTEQRQ--- 104
Query: 220 FPVLEAFSFTTILDLTYNNLNEQSLPGNFF---MLETLR-ALY-LGDNDF---------- 264
P + + D YN+ N+ N LR AL L
Sbjct: 105 -PSMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 265 -EVLPAEIGNLKNLQIMLEPR--WVISMGSC 292
+ ++ +Q ++ + W +++ +C
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW-LNLKNC 192
Score = 41.0 bits (95), Expect = 5e-04
Identities = 49/303 (16%), Positives = 88/303 (29%), Gaps = 96/303 (31%)
Query: 21 LANLVNLEILTLFNNQIETLPTS--------LSSLPKLRILNLGMNRLSSLPRGFGAFPV 72
L N+ N + FN + L T+ LS+ I L V
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSMTLTPDEV 303
Query: 73 LEVLDLTYNNLNEQSLP-----GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILET 127
+L L Y + Q LP N L + + D A N K++
Sbjct: 304 KSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAES-IRDG-----LATWDNWKHVNC---- 352
Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
D + I+ S L L P R + + L+
Sbjct: 353 ---DKLTT----IIESS-------LNVLEPA-----EYRKMFDRLS-------------- 379
Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGN 247
+FP + I LS + + + L Y+ + +Q
Sbjct: 380 --VFP--------PSAHIPTILLSLI---WFDVIKSDVMVVVNKL-HKYSLVEKQPKEST 425
Query: 248 FFMLETLRALYLGDNDFEVLPAEIGNLKNL-QIMLEPRWVISMGSCANGG------GYYH 300
++ ++YL L ++ N L + +++ + I ++ Y+
Sbjct: 426 I----SIPSIYL------ELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYF- 473
Query: 301 YSY 303
YS+
Sbjct: 474 YSH 476
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 43.0 bits (100), Expect = 8e-05
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 17/104 (16%)
Query: 20 GLANLVNLEILTLF--------NNQIETLPTSLS--SLPKLRILNLGMNRLSS-LPRGFG 68
++L NLE L L+ + + S P L+ L + + + F
Sbjct: 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273
Query: 69 AFPV---LEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDN 106
+ LE +D++ L + + L + ++ L+ + + N
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317
Score = 42.2 bits (98), Expect = 2e-04
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 9 LSHNKLKEIPPGLAN--LVNLEILTLFNNQI-----ETLPTSLSSLPKLRILNLGMNRLS 61
+ P + NL+ L + + + E S LP+L +++ L+
Sbjct: 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLT 292
Query: 62 -----SLPRGFGAFPVLEVLDLTYNNLNEQ 86
L L+ +++ YN L+++
Sbjct: 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDE 322
Score = 38.8 bits (89), Expect = 0.002
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 5 TRITLSHNKLK-EIPPGLAN---LVNLEILTLFNNQI-----ETLPTSLSSLPKLRILNL 55
+ + + + + L LE + + + L + + L+ +N+
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 56 GMNRLS 61
N LS
Sbjct: 315 KYNYLS 320
Score = 31.8 bits (71), Expect = 0.28
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 23/135 (17%)
Query: 8 TLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRG 66
+S + ++ P L + L L + ++ P L+ L + L S+
Sbjct: 155 EISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG--KKPRPNLKSLEIISGGLPDSVVED 212
Query: 67 FGA--FPVLEVLDLTYNNLN----------EQSLPGNFFMLETLRALYLGDNDF-----E 109
P LE L L + + F L+ L + D + E
Sbjct: 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF--PNLKWLGIVDAEEQNVVVE 270
Query: 110 VLPAEIGNLKNLQII 124
+ E L L+ +
Sbjct: 271 MF-LESDILPQLETM 284
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 42.5 bits (101), Expect = 8e-05
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
P M+ + G I+ +SS+ G VG P Y A+K V GL ++ A EL
Sbjct: 125 TPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAAREL 172
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 42.5 bits (101), Expect = 9e-05
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
NLK + + L MM+ G IV I+S+ G G P V Y A+K V G+ ALA E+
Sbjct: 136 NLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREI 195
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 40.9 bits (96), Expect = 1e-04
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 14 LKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN------RLSSLPRG 66
+P V+ L L N + LP L +LP LR +LG N RL L
Sbjct: 22 WASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW 79
Query: 67 FGAFP 71
P
Sbjct: 80 LAGRP 84
Score = 36.7 bits (85), Expect = 0.002
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 59 RLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDN 106
+SLP F L LT NNL +LP L LR +LG N
Sbjct: 21 TWASLPTAF--PVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGAN 65
Score = 36.3 bits (84), Expect = 0.003
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 209 RLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDN 262
+SLP F TT L LT NNL +LP L LR +LG N
Sbjct: 21 TWASLPTAF--------PVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGAN 65
Score = 35.6 bits (82), Expect = 0.006
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 5 TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQ 36
T + L+ N L +PPG L L L L N
Sbjct: 34 TELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 29.8 bits (67), Expect = 0.53
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
T++D L SLP F L L N+ LP + L L+
Sbjct: 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALR 58
Score = 29.0 bits (65), Expect = 1.2
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
L SLP F L L N+ LP + L L+
Sbjct: 19 GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALR 58
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 42.1 bits (100), Expect = 1e-04
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+ MM+ G IV I+S+ GI+G P Y ASK + G A+A+E
Sbjct: 123 VKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEY 170
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 42.1 bits (100), Expect = 1e-04
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
NL ++ + + L MM+K +G I+ + S+ G +G Y A+K V G +++A E+
Sbjct: 114 NLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREV 173
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 41.8 bits (99), Expect = 1e-04
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 131 DMMEKN-------RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
M +N RG IV +S+A G Y ASK V L A EL A
Sbjct: 114 WAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAAREL---AG-W 169
Query: 184 KIKFTSIFPFMVDTGL 199
I+ ++ P + DT L
Sbjct: 170 GIRVVTVAPGLFDTPL 185
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 41.8 bits (99), Expect = 1e-04
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
RG IV +S+A G Y ASK V L A EL AR I+ +I P + D
Sbjct: 142 RGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAAREL---ARF-GIRVVTIAPGIFD 197
Query: 197 TGL 199
T +
Sbjct: 198 TPM 200
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase,
photosynthetic P sulfur bacterium, iron-sulfur cluster,
NI-A state; HET: SF4; 2.10A {Allochromatium vinosum}
Length = 269
Score = 41.9 bits (98), Expect = 2e-04
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 284 RWVISMGSCANGGGYY--HYSYSVVRGCDRIIPVD--IYVPGCPPTAEALMYGILQL 336
VI++G+CA GG + + ++ I VPGCPP + I
Sbjct: 105 AAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHY 161
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 41.6 bits (98), Expect = 2e-04
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGL---PNLVPYCASKFAVRGLMEALAE 174
L L+ + M R I+ +SS+ G + + Y SK A+ ++L+
Sbjct: 146 LPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSV 205
Query: 175 ELREDARNSKIKFTSIFPFMVDT 197
+L +I S+ P V T
Sbjct: 206 DLYPQ----RIMCVSLHPGWVKT 224
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 41.4 bits (98), Expect = 2e-04
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
RG I+ +S+A G Y ASK V G+ +A +L A +I+ +I P + D
Sbjct: 142 RGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDL---AS-HRIRVMTIAPGLFD 197
Query: 197 TGL 199
T L
Sbjct: 198 TPL 200
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 40.9 bits (97), Expect = 2e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
MM+K G I+ I S+ G G P YCA+K V G ++LA E+
Sbjct: 128 MMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEV 172
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 41.0 bits (97), Expect = 2e-04
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
MM + G I+ I+S+ G+VG P YCA+K + G +ALA+E+
Sbjct: 147 MMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEI 191
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 41.6 bits (98), Expect = 3e-04
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 131 DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
+ G I+ SS AG+ G Y A+K + L A E+
Sbjct: 165 KAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMG 211
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 41.0 bits (97), Expect = 3e-04
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M++K G I+ ISS+ GI G P YCASK + G+ ++L+ E+
Sbjct: 130 MIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEV 174
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 40.9 bits (97), Expect = 3e-04
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
M+++ G IV ISS+ G G V Y +K + G ++LA+EL
Sbjct: 131 MIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKEL 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 41.2 bits (97), Expect = 3e-04
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 31/133 (23%)
Query: 1 MLYITRITLSHNKL-----KEIPPGLA-NLVNLEILTLFNNQI-----ETLPTSLSSLPK 49
L ++ L N L K++ L + + L L NN + L L+
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184
Query: 50 LRILNLGMNRLSSLPRGFGAF-------PVLEVLDLTYNNLNE-------QSLPGNFFML 95
+ L+L L G L+ L++ YN + ++ +
Sbjct: 185 VTHLSLLHTGLG--DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH---- 238
Query: 96 ETLRALYLGDNDF 108
+L L+L N+
Sbjct: 239 PSLELLHLYFNEL 251
Score = 36.6 bits (85), Expect = 0.009
Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 33/131 (25%)
Query: 3 YITRITLSHNKLKEIPPGLANLV--------NLEILTLFNNQI--ETLPTSLSSLPKLRI 52
+ ++ L+ ++ P + L+ + L + Q+ L T L + R
Sbjct: 73 SLRQLNLAGVRMT--PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130
Query: 53 LNLGMNRLSSLPRGFGAF--------PVLEVLDLTYNNLNEQS-------LPGNFFMLET 97
L L +N L P + L L+ N L L GN +
Sbjct: 131 LGLQLNSLG--PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN----TS 184
Query: 98 LRALYLGDNDF 108
+ L L
Sbjct: 185 VTHLSLLHTGL 195
Score = 35.8 bits (83), Expect = 0.015
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 14/107 (13%)
Query: 12 NKLKEIPPGLANLVNLEILTLFNNQIET--LPTSLSSLPKLRILNLGMNRLSSLPRGFGA 69
KL ++ G L E+L E S L LR LNL R++ P
Sbjct: 36 KKLGKL--GRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMT--PVKCTV 91
Query: 70 F--------PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
L+ ++L L+ L + R L L N
Sbjct: 92 VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138
Score = 32.0 bits (73), Expect = 0.24
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 4 ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI-----ETLPTSLSSLPKLRIL 53
+T ++L H L + + L L+ L + N L + P L +L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244
Query: 54 NLGMNRLS-----SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL 101
+L N LS L GA + ++ S + + E R L
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNL 297
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 41.0 bits (97), Expect = 3e-04
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
L + + I+ +S+ G L+ Y A+K A+ +L++ L
Sbjct: 169 LSHLKQG--DVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSL 214
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 40.6 bits (96), Expect = 4e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 129 LPDMMEKNRGHIVGIS--SMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
+P M ++N G I+ G + A+K + L + +A E
Sbjct: 130 VPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEE 179
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 38.5 bits (90), Expect = 0.002
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP-------NLVPYCASKFAVRGLME 170
L L+ D + +R ++ ISS G + ++ Y SK A+
Sbjct: 125 LPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGR 184
Query: 171 ALAEELREDARNSKIKFTSIFPFMVDT 197
LA +L++D + + P V T
Sbjct: 185 TLAVDLKDD----NVLVVNFCPGWVQT 207
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 38.1 bits (89), Expect = 0.003
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 4 ITRITLSHNKL-----KEIPPGLANL-VNLEILTLFNNQI-----ETLPTSLSSLPK-LR 51
IT + L N L E+ LA + N+ L L N + L L+S+P +
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199
Query: 52 ILNLGMNRL-----SSLPRGFGAFP-VLEVLDLTYNNLNEQSLPGNFFMLE---TLRALY 102
L+L N L + L F + P + L+L N L+ SL + + L+ +Y
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259
Query: 103 LGDNDF 108
L +
Sbjct: 260 LDYDIV 265
Score = 36.2 bits (84), Expect = 0.012
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 4 ITRITLSHNKL-----KEIPPGLA-NLVNLEILTLFNNQI-----ETLPTSLSSLP-KLR 51
+T + LS N L E+ A ++ L L N + + L L+++P +
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 52 ILNLGMNRLS-----SLPRGFGAFP-VLEVLDLTYNNLNEQSLPGNFFMLE----TLRAL 101
LNL N LS L + A P + VLDL +N+ + +S ++ +L
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143
Query: 102 YLGDNDF 108
L ND
Sbjct: 144 NLRGNDL 150
Score = 31.6 bits (72), Expect = 0.40
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 19/94 (20%)
Query: 32 LFNNQIET-----LPTSLSSLPKLRILNLGMNRLSSLPRGFGAF--------PVLEVLDL 78
+ + S + L+L +N L + L+L
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY--SISTVELIQAFANTPASVTSLNL 58
Query: 79 TYNNLNEQSLPGNFFMLE----TLRALYLGDNDF 108
+ N+L ++ +L + +L L N
Sbjct: 59 SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92
Score = 30.8 bits (70), Expect = 0.66
Identities = 11/101 (10%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 4 ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI--------ETLPTSLSSLPKL 50
+ + L N L + + +L +L+ + L + + + L + ++ K+
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286
Query: 51 RILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGN 91
+++ + + P+ ++ + SL
Sbjct: 287 ILVDKNGKEIHP----SHSIPISNLIRELSGKADVPSLLNQ 323
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 36.6 bits (85), Expect = 0.007
Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 43/117 (36%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP-------------------------- 157
+ LP + K +G +V +SS+ + L + P
Sbjct: 120 VCTELLPLI--KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVED 177
Query: 158 ---------------YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199
Y +K V L A +L E + KI + P V T +
Sbjct: 178 TKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDM 234
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 36.0 bits (83), Expect = 0.016
Identities = 49/293 (16%), Positives = 89/293 (30%), Gaps = 54/293 (18%)
Query: 21 LANLVNLEILTLFNNQI--ETLPTSLSSLPKLRILNL-GMNRLS--SLPRGFGAFPVLEV 75
++ LE + L + + L S ++L L S L L+
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160
Query: 76 LDLTYNNLNEQS------LPGNFFMLETLR----ALYLGDNDFEVLPAEIGNLKNLQIIL 125
LDL +++++ S P + L +L A + + E L NLK+L++
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL-- 218
Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
+ + + L L + + L+ L ++
Sbjct: 219 --------NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS---GCKEL 267
Query: 186 KFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP 245
+ S F V L S L T L+L+Y + L
Sbjct: 268 RCLSGFWDAVPAYLPAVYS----VCSRL----------------TTLNLSYATVQSYDLV 307
Query: 246 GNFFMLETLRALYL----GDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCAN 294
L+ L++ D EVL + +L+ L+ + P M
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR--VFPSEPFVMEPNVA 358
Score = 32.9 bits (75), Expect = 0.16
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 11/124 (8%)
Query: 10 SHNKLKEIPPGLANLVNLEILTLFNNQ----IETLPTSLSSLPKLRILNLGMNRLS--SL 63
KL + L L L +LS +LR L+ G L
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYL 281
Query: 64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL----GDNDFEVLPAEIGNLK 119
P + L L+L+Y + L L+ L++ D EVL + +L+
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341
Query: 120 NLQI 123
L++
Sbjct: 342 ELRV 345
Score = 28.7 bits (64), Expect = 3.0
Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 30 LTLFNNQIETLPTSLSSLPKLRILNL----GMNRLSSLPRGFGAFPVLEVLDLTYNNLNE 85
+ + N + T + PK+R + L + +P G+G + + ++ +
Sbjct: 48 VFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107
Query: 86 QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
+ + L+ + + D+ E++ N K L +
Sbjct: 108 EEI--------RLKRMVVTDDCLELIAKSFKNFKVLVL 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 35.0 bits (80), Expect = 0.027
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL---PR 65
L + V L + + + ++P+L LNL NRL L
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE---ENIPELLSLNLSNNRLYRLDDMSS 190
Query: 66 GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL 103
P L++L+L+ N L + L+ ++ L L
Sbjct: 191 IVQKAPNLKILNLSGNELK------SERELDKIKGLKL 222
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 34.9 bits (80), Expect = 0.029
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 49/129 (37%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV-------------------------- 150
N ++ + E +P + + IV +SS G +
Sbjct: 152 NYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMV 211
Query: 151 ----------------GLPNLVP-YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF 193
G P+ Y SK + LA ++ K + + P
Sbjct: 212 VNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRVLANKI------PKFQVNCVCPG 265
Query: 194 MVDTGLCKN 202
+V T +
Sbjct: 266 LVKTEMNYG 274
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 34.5 bits (79), Expect = 0.044
Identities = 28/115 (24%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 14 LKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRGFGAFPV 72
L ANL +L + +L KL L L + +P F
Sbjct: 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294
Query: 73 LEVLDLTYNNLNEQSLPGNFFMLETLRALYL----GDNDFEVLPAEIGNLKNLQI 123
+ LDL Y L + L L GD EVL LK L+I
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349
Score = 32.6 bits (74), Expect = 0.19
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQI--ETLPTSLSSLPKLRILNLGMNRLSSLP 64
L E+ +L L +I + L T + L + +G + L
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236
Query: 65 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL------YLGDNDFEVLPAEIGNL 118
F A LE N + +P + L R L Y+G N+ +L +
Sbjct: 237 GFFKAAANLEEFCGGSLN-EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295
Query: 119 KNLQI 123
+ L +
Sbjct: 296 RKLDL 300
Score = 31.1 bits (70), Expect = 0.67
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 16/117 (13%)
Query: 21 LANLVNLEILTLFNNQI----ETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAF----PV 72
L L + Q L P +R + LG S G F P
Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD--EGLMEFSRGCPN 489
Query: 73 LEVLDLTYNNLNEQSLPGNFFMLETLRALYL-----GDNDFEVLPAEIGNLKNLQII 124
L+ L++ +E+++ L +LR L++ +++ N+++I
Sbjct: 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM-QMARPYWNIELI 545
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 33.3 bits (76), Expect = 0.064
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 12 NKLKEIPPGLANLVNLE--ILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGA 69
+ +P N ++E I L + T L + + + R+ SL
Sbjct: 14 YVPRIVPDEPDNDTDVESCINRLREDD-----TDLKEVNINNMKRVSKERIRSLIEAACN 68
Query: 70 FPVLEVLDLTYNNLNEQSLPGNFFMLE---TLRALYLGDNDF 108
+E L +++ G ++E +LR L + N
Sbjct: 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110
Score = 29.0 bits (65), Expect = 1.8
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 230 TILDLTYNNLNEQSLPGNFFMLE---TLRALYLGDNDF 264
L +++ G ++E +LR L + N
Sbjct: 73 EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 33.1 bits (76), Expect = 0.16
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
Query: 139 HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
H+VG+SS+AG G LVP L + L + R D
Sbjct: 649 HVVGVSSLAG--GHLTLVP---------ALRKELDKLGRPD 678
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic
aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo
sapiens} PDB: 2xiq_A* 3bic_A
Length = 762
Score = 31.2 bits (71), Expect = 0.55
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 139 HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
H VG+S++A G LVP L++ L R D
Sbjct: 657 HAVGVSTLAA--GHKTLVP---------ELIKELNSLGRPD 686
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix}
Length = 161
Score = 29.7 bits (67), Expect = 0.84
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 139 HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
++G+S + G +L+ LM L E +D
Sbjct: 71 DVIGVSILNG--AHLHLMKR---------LMAKLRELGADD 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 29.5 bits (66), Expect = 1.6
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI--ETLPTSLSSLPKLRILNLGMNRLS 61
+ + + + + ++ + L N+ I TL LS KL+ L+L RLS
Sbjct: 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131
Query: 62 -SLPRGFGAFPVLEVLDLTY-NNLNEQSLPGNFFMLETLRALYLGD 105
+ L L+L+ + +E +L L L L
Sbjct: 132 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177
Score = 27.2 bits (60), Expect = 9.4
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 17/79 (21%)
Query: 21 LANLVNLEILTLFNNQI-ETLPTSLSSLPKLRILNL---------GMNRLSSLPRGFGAF 70
L+ L+ L+L ++ + + +L+ L LNL + L S
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR---- 169
Query: 71 PVLEVLDLTY-NNLNEQSL 88
L+ L+L++ + E+ +
Sbjct: 170 --LDELNLSWCFDFTEKHV 186
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.8
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 27/57 (47%)
Query: 114 EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
E LK LQ L+ + D S+ P L A++ ME
Sbjct: 18 EKQALKKLQASLKLYADD------------SA-------PAL--------AIKATME 47
Score = 27.6 bits (60), Expect = 3.9
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 5/23 (21%)
Query: 35 NQIETLPTSLS-----SLPKLRI 52
++ L SL S P L I
Sbjct: 20 QALKKLQASLKLYADDSAPALAI 42
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction,
TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A
{Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A*
1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Length = 137
Score = 28.5 bits (64), Expect = 2.0
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 18/80 (22%)
Query: 100 ALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159
+ F V+ IG L ++ ++ + + + +SS+ G
Sbjct: 24 DHAFTNAGFNVV--NIGVLSPQELFIKAA-----IETKADAILVSSLYG----------- 65
Query: 160 ASKFAVRGLMEALAEELRED 179
+ +GL + E E
Sbjct: 66 QGEIDCKGLRQKCDEAGLEG 85
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal
peptide digestion, bacterial membrane, hydrolase; 2.37A
{Bacillus subtilis}
Length = 240
Score = 28.7 bits (65), Expect = 2.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 286 VISMGSCANGGGYYHYSYSVVRGCDRII 313
+SMGS A GGYY + D+I
Sbjct: 83 YVSMGSMAASGGYY-----ISTAADKIF 105
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 28.8 bits (65), Expect = 3.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
L +EK HI+ + MAG+ L P A + L +AL E
Sbjct: 714 LAVELEKAGAHIIAVKDMAGL-----LKPA-----AAKVLFKALREA 750
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu
genomics, center for structural genomics of infectious
DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Length = 359
Score = 28.5 bits (63), Expect = 3.5
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 12/46 (26%)
Query: 147 AGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFP 192
AG+ P ++P A F E L KF S
Sbjct: 277 AGVFSAPVILPVLAELFKQNSSEENL------------QKFLSDNT 310
>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein,
icosahedral virus; 3.50A {Bluetongue virus} SCOP:
e.28.1.1
Length = 901
Score = 28.2 bits (62), Expect = 5.6
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 8 TLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG 66
L K L + +++ + Q+ P + +P+ I NL MN + LP G
Sbjct: 241 RLGQRKRITYSQEVLTDFRRQDMIWVLALQLPVNPQVVWDVPRSSIANLIMNIATCLPTG 300
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA
ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1
c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Length = 475
Score = 27.5 bits (62), Expect = 6.7
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 118 LKNLQIILETFLPDMMEKNRGHIVGI--SSMAGI 149
+K+ + +P+M + H +GI + M+GI
Sbjct: 1 MKHSHEEIRKIIPEMRRVQQIHFIGIGGAGMSGI 34
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.9 bits (62), Expect = 6.8
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 109 EVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
+V + NL + P++ + V SS++ G Y
Sbjct: 1990 DVSKPKYSGTANLDRVTREACPEL-----DYFVIFSSVSCGRGNAGQANY----GFANSA 2040
Query: 169 MEALAEELRED 179
ME + E+ R D
Sbjct: 2041 MERICEKRRHD 2051
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase,
bacterial cell WALL; 2.50A {Escherichia coli}
Length = 491
Score = 27.5 bits (62), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 125 LETFLPDMMEKNRGHIVGI--SSMAGI 149
L + +P+M H VGI + M GI
Sbjct: 9 LRSIVPEMRRVRHIHFVGIGGAGMGGI 35
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 27.7 bits (62), Expect = 8.7
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 10/47 (21%)
Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
L +E+ HI+ I MAG+ L P A L+ L
Sbjct: 697 LAKELEREGFHILAIKDMAGL-----LKPK-----AAYELIGELKSA 733
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.417
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,512,437
Number of extensions: 343211
Number of successful extensions: 4532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1680
Number of HSP's successfully gapped: 1049
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (25.9 bits)