Query psy5271
Match_columns 113
No_of_seqs 134 out of 1035
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:07:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_6 NADH-quinone oxidoreduc 100.0 1.1E-35 3.7E-40 221.8 7.8 108 4-112 53-169 (181)
2 1wui_S Periplasmic [NIFE] hydr 99.9 4.5E-29 1.5E-33 195.2 1.9 103 11-113 56-185 (267)
3 1h2a_S Hydrogenase; SO ligand, 99.9 3.4E-28 1.2E-32 194.2 1.0 95 18-112 114-234 (317)
4 1yq9_A Periplasmic [NIFE] hydr 99.9 2E-27 6.8E-32 185.7 2.4 90 23-112 71-181 (264)
5 3ayx_B Membrane-bound hydrogen 99.9 1.7E-26 5.8E-31 182.0 3.3 90 23-112 80-192 (283)
6 2wpn_A Periplasmic [nifese] hy 99.9 2E-26 6.7E-31 184.0 3.0 80 23-102 109-212 (317)
7 1cc1_S Hydrogenase (small subu 99.9 8.6E-26 2.9E-30 177.9 4.1 80 23-102 75-183 (283)
8 3rgw_S Membrane-bound hydrogen 99.9 3.2E-25 1.1E-29 178.3 5.7 90 23-112 74-183 (339)
9 3myr_A Hydrogenase (NIFE) smal 99.9 1.2E-25 4E-30 176.2 1.4 90 23-112 71-181 (269)
10 1yqw_A Periplasmic [NIFE] hydr 99.9 2.5E-25 8.7E-30 173.8 2.9 89 23-112 73-180 (264)
11 3uqy_S Hydrogenase-1 small cha 99.9 1.7E-25 5.8E-30 179.7 1.9 90 23-112 74-183 (335)
12 2wcv_A L-fucose mutarotase; ri 57.7 8.2 0.00028 26.8 3.1 27 33-59 106-132 (140)
13 3mvk_A Protein FUCU, protein R 56.3 9.1 0.00031 26.8 3.1 27 33-59 111-137 (148)
14 3e7n_A D-ribose high-affinity 56.0 8.4 0.00029 26.7 2.8 25 35-59 110-134 (142)
15 3dsa_A D-ribose high-affinity 55.4 7.9 0.00027 27.0 2.7 27 33-59 108-134 (142)
16 2wcu_A FUCU, protein FUCU homo 55.3 8.6 0.00029 27.0 2.8 27 33-59 115-141 (149)
17 1ogd_A High affinity ribose tr 55.1 8.4 0.00029 26.5 2.7 27 33-59 97-123 (131)
18 4a34_A RBSD/FUCU transport pro 53.7 9.3 0.00032 26.8 2.8 27 33-59 107-133 (147)
19 2ob5_A AGR_C_3656P, hypothetic 51.4 9.6 0.00033 26.9 2.6 28 32-59 116-143 (153)
20 3p12_A D-ribose pyranase; carb 45.3 11 0.00038 26.4 2.1 27 33-59 100-128 (144)
21 4ay9_B Follitropin subunit bet 42.5 8.4 0.00029 26.0 1.0 17 72-88 55-71 (111)
22 3fxt_A Nucleoside diphosphate- 35.5 32 0.0011 23.1 3.1 31 82-112 43-75 (113)
23 3ju3_A Probable 2-oxoacid ferr 34.9 9.2 0.00032 25.2 0.3 62 35-99 56-117 (118)
24 1hcn_B Human chorionic gonadot 31.2 15 0.00052 25.9 0.9 41 48-88 33-77 (145)
25 2hhi_A Antigen MPT64, immunoge 25.6 31 0.0011 24.3 1.8 53 51-103 3-55 (204)
26 1ic9_A TH10AOX; three stranded 22.8 25 0.00085 18.0 0.5 10 77-86 11-20 (29)
27 1uuy_A CNX1, molybdopterin bio 20.5 82 0.0028 21.5 3.1 22 78-99 135-156 (167)
No 1
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=100.00 E-value=1.1e-35 Score=221.84 Aligned_cols=108 Identities=40% Similarity=0.741 Sum_probs=88.0
Q ss_pred ecCcccchhhcCC--ccCCCe-----EEeecCCCC-chH-HHHHHHhcCCCeEEEeeccCCcCCCCCCCCccccCCCccc
Q psy5271 4 IYRPFTASLQLTN--FLTPPR-----IEPGSTTCK-ASA-VTTTSWMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRII 74 (113)
Q Consensus 4 ~~~p~~d~~r~~~--~~~sP~-----iVeG~v~~~-~~~-~~~~~~~~~~k~vIA~GtCA~~GGi~~~~~~~~~~v~~~v 74 (113)
+.+|.||.+|++. +.+||| +|||+|+++ .+. ++++++|++||+|||+|+||++||+| .+|+.+.|+++++
T Consensus 53 ~~~p~yDl~rfGi~~~~aSPrqaDiliVeG~Vt~~m~~~l~~~~e~~p~pk~VIAvGsCA~~GGi~-~~y~~~~gvd~ii 131 (181)
T 3i9v_6 53 STDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVV 131 (181)
T ss_dssp TTTTC----------------CCCCEEEESCCBTTTHHHHHHHHHSSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTS
T ss_pred hhhchhhHHHcCcccccCCCCCceEEEEeccCCcccHHHHHHHHHHcCCCceEEEeecccccCCCC-CCCcccCCcccCC
Confidence 4689999999987 557999 999999999 555 99999999999999999999999999 7999999999999
Q ss_pred ccceEecCCCCCHHHHHHHHHHHHHHHHhccccccccc
Q psy5271 75 PVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR 112 (113)
Q Consensus 75 ~vdi~IpGCPP~Pe~i~~~l~~l~~~i~~~~~~~~~~~ 112 (113)
|||+|||||||+||+|+++|++|+++|++++....|.+
T Consensus 132 pVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~~~~~~~~ 169 (181)
T 3i9v_6 132 PVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERGER 169 (181)
T ss_dssp CCSEEECCSSCCHHHHHHHHHHHHHHHTTCCBCTTSCB
T ss_pred CccEEeeCCCCCHHHHHHHHHHHHHHHhhccccccccc
Confidence 99999999999999999999999999999888777654
No 2
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=99.95 E-value=4.5e-29 Score=195.21 Aligned_cols=103 Identities=19% Similarity=0.344 Sum_probs=86.8
Q ss_pred hhhcCC-ccCCCe----EEeecCCCCc----------h-HHHHHHHhcCCCeEEEeeccCCcCCCCCCCCc--cccCCCc
Q psy5271 11 SLQLTN-FLTPPR----IEPGSTTCKA----------S-AVTTTSWMLEPRWVISMGSCANGGGYYHYSYS--VVRGCDR 72 (113)
Q Consensus 11 ~~r~~~-~~~sP~----iVeG~v~~~~----------~-~~~~~~~~~~~k~vIA~GtCA~~GGi~~~~~~--~~~~v~~ 72 (113)
.+|++. ++++|+ +|||+|+++. + ++.+++++++||+|||+||||++|||++.+|+ .+.|+++
T Consensus 56 ~e~~~~~~~~~p~~Dil~VeG~V~~~~~g~~~~~~g~~~l~~~~e~~~~ak~VIAvGsCA~~GGi~a~~~n~t~~~gv~~ 135 (267)
T 1wui_S 56 AEAALEQAVNSPHGFIAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVND 135 (267)
T ss_dssp HHHHHHHHHTCTTCEEEEEESBEECGGGGTTBEETTEEHHHHHHHHGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHH
T ss_pred HHHHHHHHhcCCCCeEEEEeCCCccCCCcceeecCChHHHHHHHHHhccCCEEEEeeeccccCCCCCCcCCCcCCCCHHH
Confidence 455543 345787 9999999994 3 49999999999999999999999999998766 6789999
Q ss_pred ccc---c-ceEecCCCCCHHHHHHHHHHHH-HH----HHhcccccccccC
Q psy5271 73 IIP---V-DIYVPGCPPTAEALMYGILQLQ-KK----VKRMKILQSWYRR 113 (113)
Q Consensus 73 ~v~---v-di~IpGCPP~Pe~i~~~l~~l~-~~----i~~~~~~~~~~~~ 113 (113)
+|+ | |+|||||||+||+|+++|++|+ .+ +.+.++++.||.|
T Consensus 136 vv~~~~vpdi~IPGCPP~Pe~i~~~l~~ll~~g~~p~ld~~~RP~~~~~~ 185 (267)
T 1wui_S 136 ALKHLGVKAINIAGCPPNPYNLVGTIVYYLKNKAAPELDSLNRPTMFFGQ 185 (267)
T ss_dssp HHGGGTCCCEEECSSSCCHHHHHHHHHHHHHHSSCCCBCTTSCBHHHHSS
T ss_pred hcCcCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCcCccccCCchhhhCC
Confidence 999 6 9999999999999999999975 43 4667778777753
No 3
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=99.94 E-value=3.4e-28 Score=194.20 Aligned_cols=95 Identities=21% Similarity=0.388 Sum_probs=82.9
Q ss_pred cCCCe----EEeecCCCCch-----------HHHHHHHhcCCCeEEEeeccCCcCCCCCCCC--ccccCCCcccc---c-
Q psy5271 18 LTPPR----IEPGSTTCKAS-----------AVTTTSWMLEPRWVISMGSCANGGGYYHYSY--SVVRGCDRIIP---V- 76 (113)
Q Consensus 18 ~~sP~----iVeG~v~~~~~-----------~~~~~~~~~~~k~vIA~GtCA~~GGi~~~~~--~~~~~v~~~v~---v- 76 (113)
+++|+ +|||+|+++.+ ++.+++++++||+|||+||||++|||++.+| +.+.|++++|+ |
T Consensus 114 ~~~pr~DIliVeGsV~~~~~g~~~~~~g~~~l~~l~e~~~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vvp~~~vp 193 (317)
T 1h2a_S 114 VNSPHGFIAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVK 193 (317)
T ss_dssp HSCTTCCEEEEESBEECGGGGTTBEETTEEHHHHHHHHGGGCSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCC
T ss_pred hcCCCCeEEEEeCCCcCCCCCcceeeCChHHHHHHHHHhccCCEEEEeccccccCCcCCCCCCCccCcCHHHhcCcCCce
Confidence 34677 99999999853 4999999999999999999999999998854 57899999999 7
Q ss_pred ceEecCCCCCHHHHHHHHHHHH-HH----HHhccccccccc
Q psy5271 77 DIYVPGCPPTAEALMYGILQLQ-KK----VKRMKILQSWYR 112 (113)
Q Consensus 77 di~IpGCPP~Pe~i~~~l~~l~-~~----i~~~~~~~~~~~ 112 (113)
|+|||||||+||+|+++|++|+ .+ +.+..+++.||.
T Consensus 194 di~IPGCPP~Pe~i~~~l~~lL~~g~~p~Ld~~~RP~~~~~ 234 (317)
T 1h2a_S 194 AINIAGCPPNPYNLVGTIVYYLKNKAAPELDSLNRPTMFFG 234 (317)
T ss_dssp CBCCCCSSCCHHHHHHHHHHHHTTSSCCCBCTTSCBHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCCCccccCCchhhhc
Confidence 9999999999999999999985 33 566777877775
No 4
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=99.93 E-value=2e-27 Score=185.67 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=80.1
Q ss_pred EEeecCCCCch-----------HHHHHHHhcCCCeEEEeeccCCcCCCCCC--CCccccCCCcccc----cceEecCCCC
Q psy5271 23 IEPGSTTCKAS-----------AVTTTSWMLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRIIP----VDIYVPGCPP 85 (113)
Q Consensus 23 iVeG~v~~~~~-----------~~~~~~~~~~~k~vIA~GtCA~~GGi~~~--~~~~~~~v~~~v~----vdi~IpGCPP 85 (113)
+|||+|+++.+ ++.++++|++||+|||+||||++||||+. +|+.+.|++++++ +|+|||||||
T Consensus 71 iVeGsV~~~~~g~~~~~~~~~~~~~l~~~~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~~l~~~~~~di~IPGCPP 150 (264)
T 1yq9_A 71 VIEGGIPMGDGGYWGKVGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPP 150 (264)
T ss_dssp EEESBEECGGGSTTBEETTEEHHHHHHHHGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSC
T ss_pred EEeCCcccCCCcceeecCcHHHHHHHHHHhccCCEEEEeccccccCCCCCCCCCCccccChhHhccCCCCeEEEEECCCC
Confidence 89999999853 49999999999999999999999999987 5677889999998 8999999999
Q ss_pred CHHHHHHHHHHHHHHH----Hhccccccccc
Q psy5271 86 TAEALMYGILQLQKKV----KRMKILQSWYR 112 (113)
Q Consensus 86 ~Pe~i~~~l~~l~~~i----~~~~~~~~~~~ 112 (113)
+||+|+++|++|+++. .+.++++.||.
T Consensus 151 ~Pe~i~~~l~~ll~~~~p~Ld~~~RP~~~~~ 181 (264)
T 1yq9_A 151 NPMNFVGTVVHLLTKGMPELDKQGRPVMFFG 181 (264)
T ss_dssp CHHHHHHHHHHHHHTCSCCBCTTSCBHHHHS
T ss_pred CHHHHHHHHHHHHhCCCCCccccCCchhhhC
Confidence 9999999999999854 55667777775
No 5
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=99.92 E-value=1.7e-26 Score=182.01 Aligned_cols=90 Identities=24% Similarity=0.323 Sum_probs=80.4
Q ss_pred EEeecCCCCc----------hH-HHHHHHhcCCCeEEEeeccCCcCCCCCC--CCccccCCCcccc--cc---eEecCCC
Q psy5271 23 IEPGSTTCKA----------SA-VTTTSWMLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRIIP--VD---IYVPGCP 84 (113)
Q Consensus 23 iVeG~v~~~~----------~~-~~~~~~~~~~k~vIA~GtCA~~GGi~~~--~~~~~~~v~~~v~--vd---i~IpGCP 84 (113)
+|||+|+++. +. +.+++++++||+|||+||||++|||++. +|+.+.+++++++ || +||||||
T Consensus 80 vVeG~V~~~~~g~~~~~~g~~~l~~~~~~~~~ak~VIA~GsCA~~GGi~a~~pn~~~~~gv~~~i~~~vd~pvi~IPGCP 159 (283)
T 3ayx_B 80 AVEGNPPLNQDGMSCIIGGRPFSEQLKRMADDAKAIISWGSCASWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKVPGCP 159 (283)
T ss_dssp EEESBCBCSGGGTTBEETTEEHHHHHHHHHHTEEEEEEEHHHHHTCTGGGSTTCTTCBCCHHHHHCTTCCSCEEEECSSS
T ss_pred EEeCCCccCCCcceeeeCCcHHHHHHHHHcccCCEEEEeeeccccCCCCCCCCCCccCcChhHhccccCCCceEEeeCCC
Confidence 9999999995 44 9999999999999999999999999987 6778899999999 99 9999999
Q ss_pred CCHHHHHHHHHH-HHHH----HHhccccccccc
Q psy5271 85 PTAEALMYGILQ-LQKK----VKRMKILQSWYR 112 (113)
Q Consensus 85 P~Pe~i~~~l~~-l~~~----i~~~~~~~~~~~ 112 (113)
|+||+|+++|++ |+.+ +.+..+++.||.
T Consensus 160 P~Pe~i~~~l~~~Ll~G~~p~Ld~~~RP~~~y~ 192 (283)
T 3ayx_B 160 PIAEVMTGVITYMLTFDRIPELDRQGRPKMFYS 192 (283)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCBCTTSCBHHHHS
T ss_pred CCHHHHHHHHHHHHHcCCCCCcccccCchhhhC
Confidence 999999999999 5544 566777777775
No 6
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=99.92 E-value=2e-26 Score=183.99 Aligned_cols=80 Identities=20% Similarity=0.377 Sum_probs=73.5
Q ss_pred EEeecCCCCch----------------HHHHHHHhcCCCeEEEeeccCCcCCCCCC--CCccccCCCccc-----cc-ce
Q psy5271 23 IEPGSTTCKAS----------------AVTTTSWMLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRII-----PV-DI 78 (113)
Q Consensus 23 iVeG~v~~~~~----------------~~~~~~~~~~~k~vIA~GtCA~~GGi~~~--~~~~~~~v~~~v-----~v-di 78 (113)
+|||+|+++.. ++.+++++++||+|||+||||++|||++. +|+.+.++++++ ++ |+
T Consensus 109 iVEGsV~~~~~g~~~~~~~~~~~~~~~~e~l~e~~~~ak~VIAvGsCA~~GGI~a~~~n~t~~~gv~~il~~~~~~vp~I 188 (317)
T 2wpn_A 109 VIEGSVPVEADGKYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVV 188 (317)
T ss_dssp EEESBEECTGGGTTBEEEEETTEEEEHHHHHHHHGGGEEEEEEEHHHHHHCTGGGSTTCCSCEECHHHHHHHTTCCCCEE
T ss_pred EEeCCcccCCCcceeeecccccCCcCHHHHHHHHhccCCEEEEeccccccCCCCCCCCCCccccCHHHHhhccCCCCCeE
Confidence 99999999843 49999999999999999999999999975 677888999988 67 89
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHH
Q psy5271 79 YVPGCPPTAEALMYGILQLQKKVK 102 (113)
Q Consensus 79 ~IpGCPP~Pe~i~~~l~~l~~~i~ 102 (113)
|||||||+||+|+++|++|+.+.+
T Consensus 189 ~IPGCPP~Pe~i~~~L~~ll~~~~ 212 (317)
T 2wpn_A 189 NIPGCPPHPDWIVGTVVLALDAIK 212 (317)
T ss_dssp EECSSSCCHHHHHHHHHHHHHHHH
T ss_pred EeeCCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999884
No 7
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=99.91 E-value=8.6e-26 Score=177.92 Aligned_cols=80 Identities=15% Similarity=0.280 Sum_probs=71.8
Q ss_pred EEeecCCCC-c-------------------hH-HHHHHHhcCCCeEEEeeccCCcCCCCCC--CCccccCCCccc-----
Q psy5271 23 IEPGSTTCK-A-------------------SA-VTTTSWMLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRII----- 74 (113)
Q Consensus 23 iVeG~v~~~-~-------------------~~-~~~~~~~~~~k~vIA~GtCA~~GGi~~~--~~~~~~~v~~~v----- 74 (113)
+|||+|+++ . +. +.++++|++||+|||+||||++|||++. +|+.+.++++++
T Consensus 75 vVEGsV~~~~~g~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ak~VIAvGtCA~~GGI~a~~~n~t~~~gv~~vl~~~~~ 154 (283)
T 1cc1_S 75 LVEGAIPTAKEGRYCIVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKI 154 (283)
T ss_dssp EEESBEECGGGGTTBEEEC---CCSSSCCEEHHHHHHHHGGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTC
T ss_pred EEeCCcccCCCceeeeecCccccccccccccHHHHHHHHhccCCEEEEEeeccccCCcCCCCCCCcccccHHHHhhcccC
Confidence 899999998 4 44 9999999999999999999999999986 666788999987
Q ss_pred cc-ceEecCCCCCHHHHHHHHHHHHHHHH
Q psy5271 75 PV-DIYVPGCPPTAEALMYGILQLQKKVK 102 (113)
Q Consensus 75 ~v-di~IpGCPP~Pe~i~~~l~~l~~~i~ 102 (113)
++ |+|||||||+||+|+++|++|+..+.
T Consensus 155 ~~p~i~IPGCPP~Pe~i~~~L~~l~~~~~ 183 (283)
T 1cc1_S 155 EKLLVNVPGCPPHPDWMVGTLVAAWSHVL 183 (283)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCceEEeeCCCCCHHHHHHHHHHHhhhhh
Confidence 67 89999999999999999999766554
No 8
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=99.91 E-value=3.2e-25 Score=178.30 Aligned_cols=90 Identities=23% Similarity=0.305 Sum_probs=77.8
Q ss_pred EEeecCCCCch-----------HHHHHHHhcCCCeEEEeeccCCcCCCCCCCCc--cccCCCcccc--cceEecCCCCCH
Q psy5271 23 IEPGSTTCKAS-----------AVTTTSWMLEPRWVISMGSCANGGGYYHYSYS--VVRGCDRIIP--VDIYVPGCPPTA 87 (113)
Q Consensus 23 iVeG~v~~~~~-----------~~~~~~~~~~~k~vIA~GtCA~~GGi~~~~~~--~~~~v~~~v~--vdi~IpGCPP~P 87 (113)
+|||+|+++.+ ++.++++|++||+|||+|+||++||||+.+++ ...+++++++ ||+|||||||+|
T Consensus 74 lVEGsV~~~~~g~y~~~gg~~~~e~l~e~~~~~k~VIAvGtCA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPP~P 153 (339)
T 3rgw_S 74 AVEGNPPLNQDGMSCIIGGRPFIEQLKYVAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIA 153 (339)
T ss_dssp EEESBCBCSGGGTTBEETTEEHHHHHHHHHTTCSEEEEEHHHHHTCTGGGSTTCTTCBCCGGGTCCSSCEEEECSSSCCH
T ss_pred EEeeeccCCCCcceeccCChHHHHHHHHHccCCCEEEEeccccccCCcCCCCCCccccCCHHHhCCCCCEEEeCCCCCCH
Confidence 99999999853 49999999999999999999999999987654 5779999998 999999999999
Q ss_pred HHHHHHHHHHHH-H----HHhccccccccc
Q psy5271 88 EALMYGILQLQK-K----VKRMKILQSWYR 112 (113)
Q Consensus 88 e~i~~~l~~l~~-~----i~~~~~~~~~~~ 112 (113)
++|+++|++++. + +.+..+++.||-
T Consensus 154 e~i~~~l~~ll~~G~~p~LD~~~RP~~fy~ 183 (339)
T 3rgw_S 154 EVMTGVITYMLTFDRIPELDRQGRPKMFYS 183 (339)
T ss_dssp HHHHHHHHHHHHHSSCCCBCTTSCBHHHHS
T ss_pred HHHHHHHHHHHhcCCCCCCCcccCchhhhC
Confidence 999999999884 3 344566666664
No 9
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=99.90 E-value=1.2e-25 Score=176.18 Aligned_cols=90 Identities=22% Similarity=0.245 Sum_probs=77.6
Q ss_pred EEeecCC--CCc---------hH-HHHHHHhcCCCeEEEeeccCCcCCCCCCCC--ccccCCCccc--ccceEecCCCCC
Q psy5271 23 IEPGSTT--CKA---------SA-VTTTSWMLEPRWVISMGSCANGGGYYHYSY--SVVRGCDRII--PVDIYVPGCPPT 86 (113)
Q Consensus 23 iVeG~v~--~~~---------~~-~~~~~~~~~~k~vIA~GtCA~~GGi~~~~~--~~~~~v~~~v--~vdi~IpGCPP~ 86 (113)
+|||+|+ ++. +. +.++++|++||+|||+|+||++||||+.++ +.+.++++++ +||+|||||||+
T Consensus 71 vVEGsV~~p~~~~g~~~~gg~~~~e~l~e~~~~~k~VIA~G~CA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPp~ 150 (269)
T 3myr_A 71 IVDGSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPI 150 (269)
T ss_dssp EEESBEECTTSCGGGBEETTEEHHHHHHHHHTTCSEEEEEHHHHHHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCC
T ss_pred EEeccCCCCcCCCccceeCChHHHHHHHHHcccCCEEEEeccccccCCccCCCCCccccCCHHHhCCCCCEEEecCCCCC
Confidence 9999999 653 44 999999999999999999999999998765 4577999999 999999999999
Q ss_pred HHHHHHHHHHHH-HH----HHhccccccccc
Q psy5271 87 AEALMYGILQLQ-KK----VKRMKILQSWYR 112 (113)
Q Consensus 87 Pe~i~~~l~~l~-~~----i~~~~~~~~~~~ 112 (113)
|++|+++|++|+ .+ +.+..+++.||.
T Consensus 151 Pe~i~~~l~~ll~~G~~p~Ld~~~RP~~~y~ 181 (269)
T 3myr_A 151 PMVITGVIAHYLVFGRLPELDGYGRPLAFYG 181 (269)
T ss_dssp HHHHHHHHHHHHHHSSCCCBCTTSCBHHHHS
T ss_pred HHHHHHHHHHHHHcCCCCCCCcccCchHHhC
Confidence 999999999998 33 345667776664
No 10
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=99.90 E-value=2.5e-25 Score=173.81 Aligned_cols=89 Identities=20% Similarity=0.362 Sum_probs=76.1
Q ss_pred EEeecCCCCch-----------HHHHHHHhcCCCeEEEeeccCCcCCCCCC--CCccccCCCc--ccccceEecCCCCCH
Q psy5271 23 IEPGSTTCKAS-----------AVTTTSWMLEPRWVISMGSCANGGGYYHY--SYSVVRGCDR--IIPVDIYVPGCPPTA 87 (113)
Q Consensus 23 iVeG~v~~~~~-----------~~~~~~~~~~~k~vIA~GtCA~~GGi~~~--~~~~~~~v~~--~v~vdi~IpGCPP~P 87 (113)
+|||+|+++.. ++.+++++++||+|||+||||++||||+. +++.+.++++ .+|| +|||||||+|
T Consensus 73 ~VeG~V~~~~~g~~~~~~g~~~~~~~~~~~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~v~~~PV-i~IPGCPP~P 151 (264)
T 1yqw_A 73 VVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKT-INIPGCPPNP 151 (264)
T ss_dssp EEESBEECGGGGTTBEETTEEHHHHHHHHHHTCSCEEEESHHHHHCCGGGSTTCTTCEECHHHHHTSCC-EEECSSSCCH
T ss_pred EEeCCcccCCCccceeeCChHHHHHHHHHhcCCCEEEEeccccccCCccCCCCCCcccccccccCCCCE-EEeeCCCCCH
Confidence 89999999943 49999999999999999999999999987 4556778887 6788 9999999999
Q ss_pred HHHHHHHHHHHHHH----Hhccccccccc
Q psy5271 88 EALMYGILQLQKKV----KRMKILQSWYR 112 (113)
Q Consensus 88 e~i~~~l~~l~~~i----~~~~~~~~~~~ 112 (113)
|+|+++|++|+.+. .+.++++.||.
T Consensus 152 e~i~~~l~~ll~~~~p~Ld~~~RP~~~~~ 180 (264)
T 1yqw_A 152 INFVGAVVHVLTKGIPDLDENGRPKLFYG 180 (264)
T ss_dssp HHHHHHHHHHHHTCCCCBCTTSCBHHHHS
T ss_pred HHHHHHHHHHHhCCCccccccCCchhhcC
Confidence 99999999998843 44555555553
No 11
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=99.90 E-value=1.7e-25 Score=179.70 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=77.9
Q ss_pred EEeecCCCCc----------h-HHHHHHHhcCCCeEEEeeccCCcCCCCCCCCc--cccCCCcccc--cceEecCCCCCH
Q psy5271 23 IEPGSTTCKA----------S-AVTTTSWMLEPRWVISMGSCANGGGYYHYSYS--VVRGCDRIIP--VDIYVPGCPPTA 87 (113)
Q Consensus 23 iVeG~v~~~~----------~-~~~~~~~~~~~k~vIA~GtCA~~GGi~~~~~~--~~~~v~~~v~--vdi~IpGCPP~P 87 (113)
+|||+|+++. + ++.++++|++||+|||+|+||++||||+.+|+ .+.|++++++ +|+|||||||+|
T Consensus 74 lVeGsV~~~~~G~y~~~gg~~~l~~l~e~~~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vi~~~~di~IPGCPP~P 153 (335)
T 3uqy_S 74 AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIP 153 (335)
T ss_dssp EEESBCBCGGGGTTBEETTEEHHHHHHHHHHHEEEEEEEHHHHHTCHHHHSTTCTTCBCCGGGTCCSSCEEEECSSSCCH
T ss_pred EEeccCCCCCCcceeccCCcHHHHHHHHHccCCCEEEEeccccccCCccCCCCCcccCcCHHHhCCCCCEEEEeCCCCCH
Confidence 9999999984 3 49999999999999999999999999987654 5789999998 799999999999
Q ss_pred HHHHHHHHHHH-HH----HHhccccccccc
Q psy5271 88 EALMYGILQLQ-KK----VKRMKILQSWYR 112 (113)
Q Consensus 88 e~i~~~l~~l~-~~----i~~~~~~~~~~~ 112 (113)
|+|+++|++++ .+ +.+..+++.||.
T Consensus 154 e~i~~~l~~ll~~G~~p~LD~~~RP~~~y~ 183 (335)
T 3uqy_S 154 DVMSAIITYMVTFDRLPDVDRMGRPLMFYG 183 (335)
T ss_dssp HHHHHHHHHHHHHTSCCCBCTTSCBHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCCCccCCchhhhC
Confidence 99999999986 33 345667777764
No 12
>2wcv_A L-fucose mutarotase; ribose, pyranase, isomerase, fucose metabolism; HET: FUC; 1.90A {Escherichia coli}
Probab=57.74 E-value=8.2 Score=26.82 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=24.0
Q ss_pred hHHHHHHHhcCCCeEEEeeccCCcCCC
Q psy5271 33 SAVTTTSWMLEPRWVISMGSCANGGGY 59 (113)
Q Consensus 33 ~~~~~~~~~~~~k~vIA~GtCA~~GGi 59 (113)
+....|+..++++.||.-|.|+-+|++
T Consensus 106 ~h~~Fy~~ak~a~aVVrTGE~~pYaNi 132 (140)
T 2wcv_A 106 NRFAFYERAQKAFAIVITGERAKYGNI 132 (140)
T ss_dssp CHHHHHHHHTTSSEEEEECCCSTTCCE
T ss_pred CHHHHHHHHhCCeEEEECCCCCcccEE
Confidence 447889999999999999999999986
No 13
>3mvk_A Protein FUCU, protein RBSD; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; HET: PGE; 1.65A {Bifidobacterium longum subsp} SCOP: c.133.1.0
Probab=56.27 E-value=9.1 Score=26.83 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=23.7
Q ss_pred hHHHHHHHhcCCCeEEEeeccCCcCCC
Q psy5271 33 SAVTTTSWMLEPRWVISMGSCANGGGY 59 (113)
Q Consensus 33 ~~~~~~~~~~~~k~vIA~GtCA~~GGi 59 (113)
+.+..|+..++++.||.-|-|+-+|++
T Consensus 111 ~h~~Fy~~~k~a~aVVrTGE~~pYaNi 137 (148)
T 3mvk_A 111 ERFAFYEQAKNAYCVIASGESAQYANL 137 (148)
T ss_dssp CHHHHHHHHTTCSEEEEECCCSTTCCE
T ss_pred CHHHHHHHHhCceEEEECCCCCceeeE
Confidence 336788899999999999999999885
No 14
>3e7n_A D-ribose high-affinity transport system; D-ribose transport system, RBSD,csgid, structural genomics; 2.45A {Salmonella typhimurium}
Probab=56.00 E-value=8.4 Score=26.73 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCeEEEeeccCCcCCC
Q psy5271 35 VTTTSWMLEPRWVISMGSCANGGGY 59 (113)
Q Consensus 35 ~~~~~~~~~~k~vIA~GtCA~~GGi 59 (113)
+..|+..++++.||.-|.|+-+|.+
T Consensus 110 ~~Fy~~a~~a~aVVrTGE~~pYaNi 134 (142)
T 3e7n_A 110 EQFKKLTADSQAVIRSGECSPYANV 134 (142)
T ss_dssp HHHHHHHTTSSEEEECCCCSTTCCE
T ss_pred HHHHHHHhcceEEEECCCCCceeEE
Confidence 6678888999999999999999985
No 15
>3dsa_A D-ribose high-affinity transport system; D-ribose transport system, RBSD, decamer, csgid, transport protein, structural genomics; 2.45A {Salmonella typhimurium} PDB: 3e7n_A
Probab=55.43 E-value=7.9 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.6
Q ss_pred hHHHHHHHhcCCCeEEEeeccCCcCCC
Q psy5271 33 SAVTTTSWMLEPRWVISMGSCANGGGY 59 (113)
Q Consensus 33 ~~~~~~~~~~~~k~vIA~GtCA~~GGi 59 (113)
+.+..|+..++++.||+-|-|+-+|.+
T Consensus 108 ~h~~Fy~~~k~a~aVVrTGE~~pYaNi 134 (142)
T 3dsa_A 108 THEQFKKLTADSQAVIRSGECSPYANV 134 (142)
T ss_dssp CHHHHHHHGGGSSEEEECCCCSTTCCE
T ss_pred CHHHHHHHHhcCeEEEECCCCCccceE
Confidence 336788999999999999999999875
No 16
>2wcu_A FUCU, protein FUCU homolog; fucose, ribose, pyranase, mutarotase, alternative splicing, isomerase; HET: FUC; 1.90A {Mus musculus}
Probab=55.28 E-value=8.6 Score=27.04 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=23.8
Q ss_pred hHHHHHHHhcCCCeEEEeeccCCcCCC
Q psy5271 33 SAVTTTSWMLEPRWVISMGSCANGGGY 59 (113)
Q Consensus 33 ~~~~~~~~~~~~k~vIA~GtCA~~GGi 59 (113)
+....|+..++++.||+-|-|+-+|++
T Consensus 115 ~r~~Fy~~ak~a~aVVrTGE~~pYaNi 141 (149)
T 2wcu_A 115 ERFEFYERAKKAFAVVATGEMALYGNI 141 (149)
T ss_dssp CHHHHHHHHHTSSEEEEECCCSTTCCE
T ss_pred CHHHHHHHHhCCeEEEECCCCCcccEE
Confidence 336788999999999999999999986
No 17
>1ogd_A High affinity ribose transport protein RBSD; sugar transport; HET: RIP; 1.95A {Bacillus subtilis} SCOP: c.133.1.1 PDB: 1ogc_A* 1oge_A* 1ogf_A
Probab=55.07 E-value=8.4 Score=26.54 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=23.8
Q ss_pred hHHHHHHHhcCCCeEEEeeccCCcCCC
Q psy5271 33 SAVTTTSWMLEPRWVISMGSCANGGGY 59 (113)
Q Consensus 33 ~~~~~~~~~~~~k~vIA~GtCA~~GGi 59 (113)
+.+..|+..++++.||.-|-|+-+|++
T Consensus 97 ~h~~Fy~~~~~a~avVrTGE~~pYaNi 123 (131)
T 1ogd_A 97 SHEEFKLLTKDAKAVIRTGEFTPYANC 123 (131)
T ss_dssp CHHHHHHHGGGCSEEEECCCCSTTCCE
T ss_pred CHHHHHHHHhCceEEEECCCCCcccEE
Confidence 346888999999999999999999985
No 18
>4a34_A RBSD/FUCU transport protein family protein; isomerase; HET: FUL; 2.50A {Streptococcus pneumoniae} SCOP: c.133.1.0
Probab=53.74 E-value=9.3 Score=26.79 Aligned_cols=27 Identities=4% Similarity=-0.100 Sum_probs=23.8
Q ss_pred hHHHHHHHhcCCCeEEEeeccCCcCCC
Q psy5271 33 SAVTTTSWMLEPRWVISMGSCANGGGY 59 (113)
Q Consensus 33 ~~~~~~~~~~~~k~vIA~GtCA~~GGi 59 (113)
+.+..|+..++++.||+-|-|+-+|.+
T Consensus 107 ~h~~Fye~ak~a~aVVrTGE~~pYaNi 133 (147)
T 4a34_A 107 RREDFYERSKKAYAIVATGETSLYANI 133 (147)
T ss_dssp CHHHHHHHHHSSSEEEEECCCSTTCCE
T ss_pred CHHHHHHHHhcceEEEEcCCCCceeeE
Confidence 336788999999999999999999885
No 19
>2ob5_A AGR_C_3656P, hypothetical protein ATU2016; putavite sugar binding protein, S genomics, PSI-2, protein structure initiative; HET: MSE; 1.60A {Agrobacterium tumefaciens str} SCOP: c.133.1.1
Probab=51.45 E-value=9.6 Score=26.90 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=24.4
Q ss_pred chHHHHHHHhcCCCeEEEeeccCCcCCC
Q psy5271 32 ASAVTTTSWMLEPRWVISMGSCANGGGY 59 (113)
Q Consensus 32 ~~~~~~~~~~~~~k~vIA~GtCA~~GGi 59 (113)
.+....|+..++++.||+-|-|+-+|++
T Consensus 116 i~r~~Fye~ak~a~aVVrTGE~~pYaNi 143 (153)
T 2ob5_A 116 IERFAFYEKAKQAYCVITTGETRFYGCF 143 (153)
T ss_dssp ECHHHHHHHHHTSSEEEECSCCSTTCCE
T ss_pred ECHHHHHHHHhcCeEEEECCCCCcccEE
Confidence 3446888999999999999999999986
No 20
>3p12_A D-ribose pyranase; carbohydrate metabolism, ISOM; 2.35A {Staphylococcus aureus} SCOP: c.133.1.0 PDB: 3p13_A*
Probab=45.27 E-value=11 Score=26.39 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=23.5
Q ss_pred hHHHHHHHhcC--CCeEEEeeccCCcCCC
Q psy5271 33 SAVTTTSWMLE--PRWVISMGSCANGGGY 59 (113)
Q Consensus 33 ~~~~~~~~~~~--~k~vIA~GtCA~~GGi 59 (113)
+.+..|+..++ ++.||+-|.|+-+|++
T Consensus 100 ~h~~Fy~~~k~~~a~aVVrTGE~~pYaNi 128 (144)
T 3p12_A 100 PHEEMKSNLAHPLNKGNIRTGETTPYSNI 128 (144)
T ss_dssp CHHHHHHGGGCTTEEEEEECCCCSTTCCE
T ss_pred CHHHHHHHhccCCeEEEEEcCCCCceeEE
Confidence 33678888888 9999999999999885
No 21
>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*
Probab=42.52 E-value=8.4 Score=26.04 Aligned_cols=17 Identities=29% Similarity=0.700 Sum_probs=12.2
Q ss_pred cccccceEecCCCCCHH
Q psy5271 72 RIIPVDIYVPGCPPTAE 88 (113)
Q Consensus 72 ~~v~vdi~IpGCPP~Pe 88 (113)
++.-..+.||||||+.|
T Consensus 55 ~~~y~tv~LpgC~pgVd 71 (111)
T 4ay9_B 55 ELVYETVRVPGCAHHAD 71 (111)
T ss_dssp EEEEEEEEECCCTTSCC
T ss_pred CEEEEEEECCCccCCCC
Confidence 44445699999999743
No 22
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=35.51 E-value=32 Score=23.11 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=27.5
Q ss_pred CCC--CCHHHHHHHHHHHHHHHHhccccccccc
Q psy5271 82 GCP--PTAEALMYGILQLQKKVKRMKILQSWYR 112 (113)
Q Consensus 82 GCP--P~Pe~i~~~l~~l~~~i~~~~~~~~~~~ 112 (113)
++| -+++.+...|.+.+..+++++..-.|.+
T Consensus 43 ~~~~~~d~~~F~~~L~~SL~~Wr~~gk~~IWlk 75 (113)
T 3fxt_A 43 DALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLH 75 (113)
T ss_dssp TTTSCBCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcCcCCHHHHHHHHHHHHHHHHHcCCeeEEEE
Confidence 454 4899999999999999999999999986
No 23
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=34.93 E-value=9.2 Score=25.15 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCeEEEeeccCCcCCCCCCCCccccCCCcccccceEecCCCCCHHHHHHHHHHHHH
Q psy5271 35 VTTTSWMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 99 (113)
Q Consensus 35 ~~~~~~~~~~k~vIA~GtCA~~GGi~~~~~~~~~~v~~~v~vdi~IpGCPP~Pe~i~~~l~~l~~ 99 (113)
+.+.+..++.+.|+.+=.. ..||....--. ..+. ..+..-..+.|=|.+|++|.+.+..+++
T Consensus 56 ~~l~~~~~~~~~vvvvE~~-~~G~l~~~i~~-~~~~-~~~~~i~~~~G~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 56 EFVKNVLSSANLVIDVESN-YTAQAAQMIKL-YTGI-DIKNKILKYNGRHMTEDEILKSAKEILN 117 (118)
T ss_dssp HHHHHHHTTCSCCCCCCCC-CCCCHHHHHHH-HHCC-CCCCCCCCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEECC-CCCcHHHHHHH-HcCC-CceeEEeeeCCeeCCHHHHHHHHHHHhh
Confidence 5667777888888877653 35665421000 0111 1112225578999999999999988764
No 24
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Probab=31.20 E-value=15 Score=25.87 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=22.6
Q ss_pred EEeeccCCcCCCCCCC----CccccCCCcccccceEecCCCCCHH
Q psy5271 48 ISMGSCANGGGYYHYS----YSVVRGCDRIIPVDIYVPGCPPTAE 88 (113)
Q Consensus 48 IA~GtCA~~GGi~~~~----~~~~~~v~~~v~vdi~IpGCPP~Pe 88 (113)
+..|=|-++--++... +..+--.++...+.+.|||||++-+
T Consensus 33 iC~GyC~T~dpv~~~p~~~~~Q~vCTy~e~~y~tv~LpgC~~gvd 77 (145)
T 1hcn_B 33 ICAGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVN 77 (145)
T ss_dssp EEEEEEEECCCCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSCC
T ss_pred eEcCEeecCCCCCcCCCCCccCCCcccCCEEEEEEEcCCCcCCCC
Confidence 4556666654332221 1112223455567799999999743
No 25
>2hhi_A Antigen MPT64, immunogenic protein MPT64; secreted antigen, residual dipolar COUP solution structure, beta-grAsp, unknown function; NMR {Mycobacterium tuberculosis}
Probab=25.63 E-value=31 Score=24.26 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=34.0
Q ss_pred eccCCcCCCCCCCCccccCCCcccccceEecCCCCCHHHHHHHHHHHHHHHHh
Q psy5271 51 GSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKR 103 (113)
Q Consensus 51 GtCA~~GGi~~~~~~~~~~v~~~v~vdi~IpGCPP~Pe~i~~~l~~l~~~i~~ 103 (113)
+.||.-||......-.+.--++...+|+.+|---|.-+.|-+-+........+
T Consensus 3 ~~c~~l~g~~~~~~~~~~~~~~~~~~~i~~P~~~~~~~~in~~i~~~~~~f~~ 55 (204)
T 2hhi_A 3 TYCEELKGTDTGQACQIQMSDPAYNINISLPSYYPDQKSLENYIAQTRDKFLS 55 (204)
T ss_dssp CHHHHTTCEECSSCEEEEEEETTEEEEEECCSCCTTTHHHHHHHHHHHHHHHH
T ss_pred chhhhhCCCCccCceeEEEcCCCeEEEEecCCCCcchHHHHHHHHHHHHHHHH
Confidence 57999999665433333323445567888888666666666666666665544
No 26
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=22.79 E-value=25 Score=17.95 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=6.8
Q ss_pred ceEecCCCCC
Q psy5271 77 DIYVPGCPPT 86 (113)
Q Consensus 77 di~IpGCPP~ 86 (113)
.+.=||||.-
T Consensus 11 tfrgpgcptl 20 (29)
T 1ic9_A 11 TFRGPGCPTL 20 (29)
T ss_dssp EEECSCCCCC
T ss_pred eecCCCCCcc
Confidence 3556899953
No 27
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=20.49 E-value=82 Score=21.48 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=17.1
Q ss_pred eEecCCCCCHHHHHHHHHHHHH
Q psy5271 78 IYVPGCPPTAEALMYGILQLQK 99 (113)
Q Consensus 78 i~IpGCPP~Pe~i~~~l~~l~~ 99 (113)
+.+||+|-.....++.++-++.
T Consensus 135 ~~LPG~P~s~~~~~~~~~P~L~ 156 (167)
T 1uuy_A 135 INMPGNPNAVAECMEALLPALK 156 (167)
T ss_dssp EEECSSTTHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHH
Confidence 8999999999887777654433
Done!